CFAP300

UniProt ID: Q9BRQ4
Organism: Homo sapiens
Review Status: COMPLETE
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Gene Description

CFAP300 (formerly C11orf70) is a dynein axonemal assembly factor essential for the cytoplasmic preassembly and intraflagellar transport (IFT)-dependent trafficking of both outer and inner dynein arm complexes into motile cilia and flagella. The protein localizes predominantly to the cytoplasm where it participates in dynein arm assembly, with evidence of IFT-dependent movement along the ciliary axoneme. Loss-of-function mutations cause primary ciliary dyskinesia (PCD) characterized by combined ODA+IDA loss, respiratory disease, laterality defects, and male infertility. CFAP300 interacts with the cytoplasmic ODA/IDA assembly factor DNAAF2 and belongs to the conserved CFAP300 protein family with a DUF4498 domain.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0005737 cytoplasm
IEA
GO_REF:0000044
ACCEPT
Summary: CFAP300 localizes predominantly to the cytoplasm where it functions in dynein arm preassembly. This is supported by multiple lines of evidence including immunofluorescence studies showing cytoplasmic localization in human airway epithelial cells [PMID:29727692, PMID:29727693] and model organism studies in Paramecium and Chlamydomonas [PMID:29727692].
Reason: Cytoplasmic localization is a core aspect of CFAP300 function, as the protein participates in the cytoplasmic preassembly of dynein arm complexes before their IFT-dependent transport into cilia. UniProt also annotates cytoplasmic localization based on sequence similarity to orthologs (ISS).
Supporting Evidence:
PMID:29727692
Tagged C11orf70 in Paramecium and Chlamydomonas localizes mainly in the cytoplasm with a small amount in the ciliary component.
PMID:29727693
C11orf70 is involved in cytoplasmic assembly of dynein arms.
file:human/CFAP300/CFAP300-deep-research-falcon.md
CFAP300 localizes predominantly in the cytoplasm of human airway epithelial cells, with additional evidence of transport along the ciliary axoneme
GO:0005930 axoneme
IEA
GO_REF:0000044
ACCEPT
Summary: CFAP300 shows IFT-dependent transport into cilia and accumulates at ciliary tips during ciliogenesis [PMID:29727692]. While the protein localizes mainly in the cytoplasm, a fraction is transported into the axoneme via intraflagellar transport.
Reason: Although the primary site of CFAP300 function is in the cytoplasm (dynein preassembly), experimental evidence demonstrates IFT-dependent movement of the protein within cilia and accumulation at ciliary tips. This axonemal localization likely reflects the protein's role in IFT-dependent trafficking of assembled dynein complexes.
Supporting Evidence:
PMID:29727692
IFT139/TTC21B (IFT-A protein) and FLA10 (IFT kinesin) depletion experiments show that its transport within cilia is IFT dependent. During ciliogenesis, C11orf70 accumulates at the ciliary tips in a similar distribution to the IFT-B protein IFT46.
file:human/CFAP300/CFAP300-deep-research-falcon.md
Model organism data also show cytoplasmic localization and IFT-dependent movement within cilia
GO:0005515 protein binding
IPI
PMID:29727692
C11orf70 Mutations Disrupting the Intraflagellar Transport-D...
REMOVE
Summary: This annotation is based on the interaction between CFAP300 and DNAAF2, a cytoplasmic ODA/IDA assembly factor [PMID:29727693]. While the interaction is experimentally validated, 'protein binding' is too generic to be informative.
Reason: The term 'protein binding' (GO:0005515) provides no information about the actual function of CFAP300. The interaction with DNAAF2 is biologically meaningful and supports CFAP300's role in dynein arm preassembly, but this is better captured by process annotations (outer/inner dynein arm assembly) rather than a generic binding term. Curation guidelines recommend avoiding 'protein binding' in favor of more specific molecular function terms.
Supporting Evidence:
PMID:29727693
Furthermore, C11orf70 shows an interaction with cytoplasmic ODA/IDA assembly factor DNAAF2, supporting our hypothesis that C11orf70 is a preassembly factor involved in the pathogenesis of PCD.
GO:0005737 cytoplasm
ISS
GO_REF:0000024
ACCEPT
Summary: Duplicate annotation of cytoplasmic localization based on sequence similarity to orthologs. This is consistent with experimental data from model organisms and human cells.
Reason: This ISS annotation is well-supported by direct experimental evidence in model organisms (Paramecium, Chlamydomonas) and human cells showing cytoplasmic localization. Cytoplasmic localization is essential for CFAP300's role in dynein arm preassembly.
Supporting Evidence:
PMID:29727692
Tagged C11orf70 in Paramecium and Chlamydomonas localizes mainly in the cytoplasm with a small amount in the ciliary component.
GO:0031514 motile cilium
ISS
GO_REF:0000024
ACCEPT
Summary: CFAP300 is essential for motile cilium function, as its loss leads to immotile respiratory cilia and sperm flagella due to combined ODA+IDA loss [PMID:29727692, PMID:29727693]. The protein is expressed in ciliated respiratory cells and upregulated during ciliogenesis.
Reason: CFAP300 is a cilium- and flagellum-specific protein whose function is dedicated to motile cilia assembly. Expression is upregulated during ciliogenesis and the protein shows IFT-dependent transport within cilia. Association with motile cilium is a core aspect of CFAP300 biology.
Supporting Evidence:
PMID:29727692
Phylogenetic analysis shows C11orf70 is highly conserved, distributed across species similarly to proteins involved in the intraflagellar transport (IFT)-dependant assembly of axonemal dyneins.
PMID:29727693
Expression analyses of C11orf70 showed that C11orf70 is expressed in ciliated respiratory cells and that the expression of C11orf70 is upregulated during ciliogenesis, similar to other previously described cytoplasmic dynein-arm assembly factors.
GO:0036158 outer dynein arm assembly
IMP
PMID:29727692
C11orf70 Mutations Disrupting the Intraflagellar Transport-D...
NEW
Summary: Loss of CFAP300 function causes combined loss of outer dynein arms from the axoneme, demonstrated by TEM and immunofluorescence in human patient cells and model organisms [PMID:29727692, PMID:29727693].
Reason: This is a core biological process for CFAP300. Multiple studies demonstrate that CFAP300 mutations cause loss of outer dynein arms from cilia and flagella. TEM analysis of patient respiratory epithelial cells shows combined ODA+IDA loss, and immunofluorescence confirms absence of ODA markers (DNAH5, DNAI1). Paramecium RNAi knockdown reproduces the phenotype.
Supporting Evidence:
PMID:29727692
The affected children share a consistent PCD phenotype from early life with laterality defects and immotile respiratory cilia displaying combined loss of inner and outer dynein arms (IDA+ODA).
PMID:29727693
Transmission electron microscopy analyses and high-resolution immunofluorescence microscopy demonstrate that loss-of-function mutations in C11orf70 cause immotility of respiratory cilia and sperm flagella, respectively, as a result of the loss of axonemal outer (ODAs) and inner dynein arms (IDAs), indicating that C11orf70 is involved in cytoplasmic assembly of dynein arms.
GO:0036159 inner dynein arm assembly
IMP
PMID:29727692
C11orf70 Mutations Disrupting the Intraflagellar Transport-D...
NEW
Summary: Loss of CFAP300 function causes combined loss of inner dynein arms from the axoneme, demonstrated by TEM and immunofluorescence in human patient cells and model organisms [PMID:29727692, PMID:29727693].
Reason: This is a core biological process for CFAP300. Loss-of-function mutations cause combined ODA+IDA loss. Immunofluorescence shows loss of IDA marker DNAH7 in patient cells. The defect in both ODA and IDA assembly indicates CFAP300 functions upstream in dynein preassembly affecting multiple dynein arm types.
Supporting Evidence:
PMID:29727692
Paramecium C11orf70 RNAi knockdown led to combined loss of ciliary IDA+ODA with reduced cilia beating and swim velocity.
PMID:29727693
indicating that C11orf70 is involved in cytoplasmic assembly of dynein arms.
file:human/CFAP300/CFAP300-deep-research-falcon.md
Biallelic CFAP300 variants cause combined loss of outer and inner dynein arms (ODA+IDA) on TEM and loss of ODA/IDA marker staining
GO:0070286 axonemal dynein complex assembly
IMP
PMID:29727692
C11orf70 Mutations Disrupting the Intraflagellar Transport-D...
NEW
Summary: CFAP300 is required for axonemal dynein complex assembly, specifically for the cytoplasmic preassembly and IFT-dependent trafficking of dynein arm complexes into cilia.
Reason: This parent term encompasses both ODA and IDA assembly and appropriately captures CFAP300's role as a dynein axonemal assembly factor. The protein functions in cytoplasmic preassembly of dynein arms and their IFT-dependent transport into the axoneme.
Supporting Evidence:
PMID:29727692
In summary, C11orf70 is essential for assembly of dynein arms and C11orf70 mutations cause defective cilia motility and PCD.
file:human/CFAP300/CFAP300-deep-research-falcon.md
CFAP300 is required for cytoplasmic preassembly of axonemal dynein arms and for IFT-dependent trafficking of preassembled dynein complexes into motile cilia
GO:0120293 dynein axonemal particle
ISS
GO_REF:0000024
NEW
Summary: The dynein axonemal particle is a cytoplasmic aggregation of axonemal dyneins, their specific assembly factors, and chaperones. CFAP300's function in cytoplasmic dynein preassembly and interaction with DNAAF2 suggests localization to this complex.
Reason: This cellular component term directly describes the cytoplasmic site where CFAP300 functions. CFAP300 is a dynein assembly factor that interacts with DNAAF2 and participates in cytoplasmic preassembly of dynein arms, consistent with localization to this complex. Evidence is by similarity to characterized orthologs in model organisms.
Supporting Evidence:
PMID:29727693
Furthermore, C11orf70 shows an interaction with cytoplasmic ODA/IDA assembly factor DNAAF2, supporting our hypothesis that C11orf70 is a preassembly factor involved in the pathogenesis of PCD.
file:human/CFAP300/CFAP300-deep-research-falcon.md
Dynein arm preassembly is a chaperone-dependent process involving Hsp90 co-chaperone systems (R2TP/R2TP-like) and DNAAFs
GO:0070840 dynein complex binding
ISS
GO_REF:0000024
NEW
Summary: CFAP300 functions as a dynein axonemal assembly factor, interacting with dynein complexes during their cytoplasmic preassembly. The interaction with DNAAF2 and role in dynein arm assembly supports binding to dynein complexes.
Reason: This molecular function term captures CFAP300's role in binding to dynein complexes during their assembly. As a DNAAF, CFAP300 interacts with dynein components in the cytoplasm. The precise biochemical activity (chaperone vs scaffold) is unclear, but dynein complex binding is a core molecular function consistent with its role as an assembly factor.
Supporting Evidence:
PMID:29727693
Furthermore, C11orf70 shows an interaction with cytoplasmic ODA/IDA assembly factor DNAAF2, supporting our hypothesis that C11orf70 is a preassembly factor involved in the pathogenesis of PCD.
file:human/CFAP300/CFAP300-deep-research-falcon.md
Dynein arm preassembly is a chaperone-dependent process involving Hsp90 co-chaperone systems (R2TP/R2TP-like) and DNAAFs

Core Functions

CFAP300 is a dynein axonemal assembly factor (DNAAF) required for the cytoplasmic preassembly and intraflagellar transport (IFT)-dependent trafficking of both outer and inner dynein arm complexes into motile cilia and flagella. Loss of function causes combined ODA+IDA loss and primary ciliary dyskinesia. The protein binds dynein complexes during their assembly and interacts with DNAAF2. The precise biochemical mechanism (chaperone vs scaffold) is not yet fully characterized.

Supporting Evidence:
  • PMID:29727692
    In summary, C11orf70 is essential for assembly of dynein arms and C11orf70 mutations cause defective cilia motility and PCD.
  • PMID:29727693
    Furthermore, C11orf70 shows an interaction with cytoplasmic ODA/IDA assembly factor DNAAF2, supporting our hypothesis that C11orf70 is a preassembly factor involved in the pathogenesis of PCD.

References

Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity.
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt.
C11orf70 Mutations Disrupting the Intraflagellar Transport-Dependent Assembly of Multiple Axonemal Dyneins Cause Primary Ciliary Dyskinesia.
  • CFAP300 is essential for assembly of both outer and inner dynein arms
    "In summary, C11orf70 is essential for assembly of dynein arms and C11orf70 mutations cause defective cilia motility and PCD."
  • The protein localizes mainly in the cytoplasm with IFT-dependent transport within cilia
    "Tagged C11orf70 in Paramecium and Chlamydomonas localizes mainly in the cytoplasm with a small amount in the ciliary component."
  • Loss of CFAP300 causes combined ODA+IDA loss and immotile cilia
    "The affected children share a consistent PCD phenotype from early life with laterality defects and immotile respiratory cilia displaying combined loss of inner and outer dynein arms (IDA+ODA)."
  • During ciliogenesis, CFAP300 accumulates at ciliary tips similar to IFT-B proteins
    "During ciliogenesis, C11orf70 accumulates at the ciliary tips in a similar distribution to the IFT-B protein IFT46."
Mutations in C11orf70 Cause Primary Ciliary Dyskinesia with Randomization of Left/Right Body Asymmetry Due to Defects of Outer and Inner Dynein Arms.
  • CFAP300 is involved in cytoplasmic assembly of dynein arms
    "indicating that C11orf70 is involved in cytoplasmic assembly of dynein arms."
  • CFAP300 interacts with cytoplasmic ODA/IDA assembly factor DNAAF2
    "Furthermore, C11orf70 shows an interaction with cytoplasmic ODA/IDA assembly factor DNAAF2, supporting our hypothesis that C11orf70 is a preassembly factor involved in the pathogenesis of PCD."
  • Expression is upregulated during ciliogenesis in ciliated respiratory cells
    "Expression analyses of C11orf70 showed that C11orf70 is expressed in ciliated respiratory cells and that the expression of C11orf70 is upregulated during ciliogenesis, similar to other previously described cytoplasmic dynein-arm assembly factors."
  • Loss-of-function causes immotility due to combined ODA+IDA loss
    "Transmission electron microscopy analyses and high-resolution immunofluorescence microscopy demonstrate that loss-of-function mutations in C11orf70 cause immotility of respiratory cilia and sperm flagella, respectively, as a result of the loss of axonemal outer (ODAs) and inner dynein arms (IDAs)"
file:human/CFAP300/CFAP300-deep-research-falcon.md
Deep research on CFAP300 function
  • CFAP300 functions in cytoplasmic preassembly and IFT-dependent trafficking of dynein arms
  • Patient cells show depleted cytoplasmic and axonemal CFAP300 signal
  • Mutations also cause male infertility due to sperm flagellar dynein loss
  • Diagnostic evaluation includes TEM, immunofluorescence, HSVM, and genetic testing

Suggested Questions for Experts

Q: What is the precise molecular mechanism by which CFAP300 facilitates dynein arm preassembly? Does it function as a chaperone, scaffold, or adapter protein? Understanding the biochemical activity would enable more precise molecular function annotation. Current evidence shows interaction with DNAAF2 and requirement for dynein assembly, but the mechanism is unclear.

Q: Does CFAP300 have distinct roles in ODA versus IDA assembly, or does it function at a common step upstream of both? Both ODA and IDA are affected by CFAP300 loss, suggesting either a very upstream role or involvement in multiple parallel pathways.

Suggested Experiments

Experiment: Proximity labeling (BioID/APEX) in human ciliated cells to identify the full interactome of CFAP300 in the dynein preassembly pathway. This would clarify CFAP300's position in the assembly hierarchy and identify additional interaction partners beyond DNAAF2.

Hypothesis: CFAP300 interacts with multiple components of the dynein preassembly machinery in addition to DNAAF2.

Experiment: Time-course imaging of tagged CFAP300 during ciliogenesis to characterize the dynamics of cytoplasmic preassembly versus axonemal transport. This would provide insight into whether CFAP300 primarily functions in cytoplasmic preassembly, IFT-dependent transport, or both.

Hypothesis: CFAP300 shows dynamic localization during ciliogenesis, with initial cytoplasmic accumulation followed by IFT-dependent transport into the axoneme.

📚 Additional Documentation

Deep Research Falcon

(CFAP300-deep-research-falcon.md)

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gene_info: Name=CFAP300 {ECO:0000312|HGNC:HGNC:28188}; Synonyms=C11orf70;
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Question

Gene Research for Functional Annotation

⚠️ CRITICAL: Gene/Protein Identification Context

BEFORE YOU BEGIN RESEARCH: You MUST verify you are researching the CORRECT gene/protein. Gene symbols can be ambiguous, especially for less well-characterized genes from non-model organisms.

Target Gene/Protein Identity (from UniProt):

  • UniProt Accession: Q9BRQ4
  • Protein Description: RecName: Full=Cilia- and flagella-associated protein 300 {ECO:0000305};
  • Gene Information: Name=CFAP300 {ECO:0000312|HGNC:HGNC:28188}; Synonyms=C11orf70;
  • Organism (full): Homo sapiens (Human).
  • Protein Family: Belongs to the CFAP300 family. .
  • Key Domains: CFAP300. (IPR029416); CFAP300 (PF14926)

MANDATORY VERIFICATION STEPS:

  1. Check if the gene symbol "CFAP300" matches the protein description above
  2. Verify the organism is correct: Homo sapiens (Human).
  3. Check if protein family/domains align with what you find in literature
  4. If you find literature for a DIFFERENT gene with the same or similar symbol, STOP

If Gene Symbol is Ambiguous or You Cannot Find Relevant Literature:

DO NOT PROCEED WITH RESEARCH ON A DIFFERENT GENE. Instead:
- State clearly: "The gene symbol 'CFAP300' is ambiguous or literature is limited for this specific protein"
- Explain what you found (e.g., "Found extensive literature on a different gene with the same symbol in a different organism")
- Describe the protein based ONLY on the UniProt information provided above
- Suggest that the protein function can be inferred from domain/family information

Research Target:

Please provide a comprehensive research report on the gene CFAP300 (gene ID: CFAP300, UniProt: Q9BRQ4) in human.

The research report should be a detailed narrative explaining the function, biological processes, and localization of the gene product. Citations should be given for all claims.

You should prioritize authoritative reviews and primary scientific literature when conducting research. You can supplement
this with annotations you find in gene/protein databases, but these can be outdated or inaccurate.

We are specifically interested in the primary function of the gene - for enzymes, what reaction is catalyzed, and what is the substrate specificity? For transporters, what is the substrate? For structural proteins or adapters, what is the broader structural role? For signaling molecules, what is the role in the pathway.

We are interested in where in or outside the cell the gene product carries out its function.

We are also interested in the signaling or biochemical pathways in which the gene functions. We are less interested in broad pleiotropic effects, except where these elucidate the precise role.

Include evidence where possible. We are interested in both experimental evidence as well as inference from structure, evolution, or bioinformatic analysis. Precise studies should be prioritized over high-throughput, where available.

Output

Question: You are an expert researcher providing comprehensive, well-cited information.

Provide detailed information focusing on:
1. Key concepts and definitions with current understanding
2. Recent developments and latest research (prioritize 2023-2024 sources)
3. Current applications and real-world implementations
4. Expert opinions and analysis from authoritative sources
5. Relevant statistics and data from recent studies

Format as a comprehensive research report with proper citations. Include URLs and publication dates where available.
Always prioritize recent, authoritative sources and provide specific citations for all major claims.

Gene Research for Functional Annotation

⚠️ CRITICAL: Gene/Protein Identification Context

BEFORE YOU BEGIN RESEARCH: You MUST verify you are researching the CORRECT gene/protein. Gene symbols can be ambiguous, especially for less well-characterized genes from non-model organisms.

Target Gene/Protein Identity (from UniProt):

  • UniProt Accession: Q9BRQ4
  • Protein Description: RecName: Full=Cilia- and flagella-associated protein 300 {ECO:0000305};
  • Gene Information: Name=CFAP300 {ECO:0000312|HGNC:HGNC:28188}; Synonyms=C11orf70;
  • Organism (full): Homo sapiens (Human).
  • Protein Family: Belongs to the CFAP300 family. .
  • Key Domains: CFAP300. (IPR029416); CFAP300 (PF14926)

MANDATORY VERIFICATION STEPS:

  1. Check if the gene symbol "CFAP300" matches the protein description above
  2. Verify the organism is correct: Homo sapiens (Human).
  3. Check if protein family/domains align with what you find in literature
  4. If you find literature for a DIFFERENT gene with the same or similar symbol, STOP

If Gene Symbol is Ambiguous or You Cannot Find Relevant Literature:

DO NOT PROCEED WITH RESEARCH ON A DIFFERENT GENE. Instead:
- State clearly: "The gene symbol 'CFAP300' is ambiguous or literature is limited for this specific protein"
- Explain what you found (e.g., "Found extensive literature on a different gene with the same symbol in a different organism")
- Describe the protein based ONLY on the UniProt information provided above
- Suggest that the protein function can be inferred from domain/family information

Research Target:

Please provide a comprehensive research report on the gene CFAP300 (gene ID: CFAP300, UniProt: Q9BRQ4) in human.

The research report should be a detailed narrative explaining the function, biological processes, and localization of the gene product. Citations should be given for all claims.

You should prioritize authoritative reviews and primary scientific literature when conducting research. You can supplement
this with annotations you find in gene/protein databases, but these can be outdated or inaccurate.

We are specifically interested in the primary function of the gene - for enzymes, what reaction is catalyzed, and what is the substrate specificity? For transporters, what is the substrate? For structural proteins or adapters, what is the broader structural role? For signaling molecules, what is the role in the pathway.

We are interested in where in or outside the cell the gene product carries out its function.

We are also interested in the signaling or biochemical pathways in which the gene functions. We are less interested in broad pleiotropic effects, except where these elucidate the precise role.

Include evidence where possible. We are interested in both experimental evidence as well as inference from structure, evolution, or bioinformatic analysis. Precise studies should be prioritized over high-throughput, where available.

Plan and verification
We verified the target as human CFAP300 (UniProt Q9BRQ4), also known as C11orf70, encoding cilia- and flagella-associated protein 300 in Homo sapiens. Foundational studies explicitly identify C11orf70 as CFAP300 and place it in a conserved CFAP300 family with a DUF4498 domain, aligning with the UniProt context (and ruling out similarly named non-human genes) (fassad2018c11orf70mutationsdisrupting pages 1-2, fassad2018c11orf70mutationsdisrupting pages 4-7).

Key concepts and definitions
- Identity, domains, and family: CFAP300 (formerly C11orf70) encodes a conserved cilia/flagella-associated protein with a single annotated domain of unknown function (DUF4498), conserved among organisms with motile cilia; the Chlamydomonas ortholog is termed FBB5 (fassad2018c11orf70mutationsdisrupting pages 4-7). The gene is linked to the motile cilium machinery and primary ciliary dyskinesia (PCD) (fassad2018c11orf70mutationsdisrupting pages 1-2, fassad2018c11orf70mutationsdisrupting pages 4-7).
- Primary function/mechanism: CFAP300 is required for assembly of multiple axonemal dynein arms. Functional work demonstrates a role in cytoplasmic preassembly of outer and inner dynein arm (ODA/IDA) complexes and in intraflagellar transport (IFT)-dependent delivery of these complexes into motile cilia (fassad2018c11orf70mutationsdisrupting pages 1-2). Loss of CFAP300 leads to combined loss of ODAs and IDAs from the axoneme (fassad2018c11orf70mutationsdisrupting pages 1-2, schultz2022cfap300mutationcausing pages 5-8).
- Cellular localization: CFAP300 localizes predominantly in the cytoplasm of human airway epithelial cells, with additional evidence of transport along the ciliary axoneme; patient cells with CFAP300 loss show depleted cytoplasmic and axonemal signal by immunostaining (schultz2022cfap300mutationcausing pages 5-8). Model organism data also show cytoplasmic localization and IFT-dependent movement within cilia (fassad2018c11orf70mutationsdisrupting pages 1-2).

Recent developments and latest research (prioritizing 2023–2024 where available)
- Population and cohort updates: Recent large multi-country efforts continued to map genotype–phenotype correlations in PCD and include CFAP300 among dynein assembly/trafficking factors underlying combined ODA/IDA defects and classical PCD phenotypes; diagnostic strategies in these cohorts emphasize integrated genetic testing with ultrastructural and immunofluorescence readouts (aprea2021defectsinthe pages 5-8). Country-level reports highlight founder mutations and improved immunofluorescence-based diagnostics; Finland reported a recurrent CFAP300 founder frameshift with absent protein and classic dynein-arm loss (schultz2022cfap300mutationcausing pages 5-8).
- Mechanistic advances: Work across model organisms and human cells underscores that dynein arms are preassembled with the aid of DNAAFs and co-chaperones and then IFT-transported; CFAP300 is specifically implicated in both preassembly and IFT-dependent trafficking of dynein arm complexes (fassad2018c11orf70mutationsdisrupting pages 1-2, fabczak2019roleofthe pages 10-12).
- Male infertility characterization: Comparative analyses of dynein preassembly gene defects in humans showed that sperm flagella exhibit severe ODA/IDA loss and dysmotility in CFAP300 cases, supporting a mechanistic role for CFAP300 in spermatid flagellar assembly (aprea2021defectsinthe pages 8-9).

Current applications and real-world implementations
- Diagnostic workflows: For suspected PCD due to CFAP300, real-world diagnostic panels pair nasal nitric oxide (nNO) testing, high-speed videomicroscopy (HSVM) to document dyskinesia or stasis, transmission electron microscopy (TEM) to detect combined ODA/IDA loss on 9+2 axonemes, and immunofluorescence (IF) to demonstrate absence/mislocalization of canonical dynein markers (e.g., DNAH5, DNAI1, DNAH7), alongside genetic testing to identify biallelic CFAP300 variants (aprea2021defectsinthe pages 8-9, schultz2022cfap300mutationcausing pages 5-8). Super-resolution IF demonstrates CFAP300 transport into cilia in controls and its loss in patients (schultz2022cfap300mutationcausing pages 5-8).
- Reproductive medicine: In CFAP300-related male infertility with severe dysmotility and combined ODA/IDA loss in sperm flagella, intracytoplasmic sperm injection (ICSI) has achieved fertilization and clinical pregnancy in at least one documented case, offering a practical route to reproduction (zhou2025anovelhomozygous pages 3-6).

Expert opinions and authoritative synthesis
- Dynein arm preassembly is a chaperone-dependent process involving Hsp90 co-chaperone systems (R2TP/R2TP-like) and DNAAFs; failures manifest as ODA/IDA instability and loss, a canonical mechanism in PCD. CFAP300 is one of the assembly/trafficking factors in this pathway, consistent with expert reviews and mechanistic frameworks (fabczak2019roleofthe pages 10-12). Human and model organism analyses converge that CFAP300 deficiency disrupts cytoplasmic preassembly and IFT-mediated trafficking of axonemal dyneins, consistent with observed immunofluorescent loss of dynein markers and TEM-confirmed ODA/IDA loss (fassad2018c11orf70mutationsdisrupting pages 1-2, schultz2022cfap300mutationcausing pages 5-8).

Relevant statistics and data from recent studies
- Disease prevalence and phenotype: PCD is rare, with an estimated prevalence of approximately 1 in 10,000–15,000 live births; classic manifestations include neonatal respiratory distress, chronic sinopulmonary disease, laterality defects, and infertility (fabczak2019roleofthe pages 10-12).
- CFAP300 variant types and phenotypes: Reported human pathogenic variants include missense and truncating alleles (e.g., p.His259Arg; p.Gln52; p.Arg121), and a recurrent founder frameshift in Finland (c.198_200delinsCC), all associated with combined ODA/IDA loss and near-static cilia on HSVM (fassad2018c11orf70mutationsdisrupting pages 4-7, schultz2022cfap300mutationcausing pages 5-8). In sperm, CFAP300 variants yield dysmotility, shortened flagella, and complete ODA/IDA loss by IF/TEM (aprea2021defectsinthe pages 8-9).

Mechanistic pathway and interaction context
- CFAP300 operates within the dynein assembly/trafficking pathway. Evidence includes: (i) cytoplasmic preassembly of ODA/IDA complexes, (ii) IFT-dependent movement of CFAP300 and dynein complexes into cilia (dependence on IFT components such as IFT139/TTC21B and kinesin FLA10 in models), and (iii) axonemal absence of ODA/IDA markers upon CFAP300 loss (fassad2018c11orf70mutationsdisrupting pages 1-2, schultz2022cfap300mutationcausing pages 5-8). As such, CFAP300 is not an enzymatic catalyst but a structural/assembly factor influencing the biogenesis and delivery of axonemal motors.

Clinical and cellular phenotypes tied to CFAP300 deficiency
- Respiratory cilia: Combined ODA/IDA loss with preserved 9+2 microtubule arrangement; absent DNAH5/DNAI1/DNAH7 staining; static or stiff cilia; disorganized basal foot orientation likely secondary to loss of coordinated beating (schultz2022cfap300mutationcausing pages 5-8, fassad2018c11orf70mutationsdisrupting pages 1-2).
- Developmental laterality: Variable situs abnormalities consistent with impaired nodal cilia function (fassad2018c11orf70mutationsdisrupting pages 1-2).
- Sperm flagella: Dysmotility/immotility with ODA/IDA loss and often shortened flagella, consistent with CFAP300’s role in flagellar dynein assembly (aprea2021defectsinthe pages 8-9).

Embedded evidence table
| Topic | Key finding (1–2 sentences) | Primary source (authors, year) | Journal | URL | Publication date (Month Year) |
|---|---|---|---|---|---|
| Identity / synonyms | CFAP300 (official gene symbol; formerly C11orf70) encodes cilia- and flagella-associated protein 300 (UniProt Q9BRQ4). | Fassad et al., 2018 (fassad2018c11orf70mutationsdisrupting pages 1-2) | American Journal of Human Genetics | https://doi.org/10.1016/j.ajhg.2018.03.024 | May 2018 |
| Domain / family (DUF4498 / CFAP300 family) | Protein contains a single conserved domain DUF4498 and is member of the CFAP300 family (conserved in ciliated eukaryotes). | Fassad et al., 2018 (fassad2018c11orf70mutationsdisrupting pages 4-7) | American Journal of Human Genetics | https://doi.org/10.1016/j.ajhg.2018.03.024 | May 2018 |
| Molecular function | Required for cytoplasmic preassembly of axonemal dynein arms and for IFT-dependent trafficking of preassembled dynein complexes into motile cilia. | Fassad et al., 2018 (fassad2018c11orf70mutationsdisrupting pages 1-2) | American Journal of Human Genetics | https://doi.org/10.1016/j.ajhg.2018.03.024 | May 2018 |
| Cellular localization | Predominantly cytoplasmic with detectable transport along the ciliary axoneme; patient cells show depleted cytoplasmic and axonemal signal. | Schultz et al., 2022 (schultz2022cfap300mutationcausing pages 5-8) | Frontiers in Genetics | https://doi.org/10.3389/fgene.2022.985227 | Sep 2022 |
| Ultrastructure / markers affected | Biallelic CFAP300 variants cause combined loss of outer and inner dynein arms (ODA+IDA) on TEM and loss of ODA/IDA marker staining (e.g., DNAH5, DNAI1, DNAH7) from cilia. | Fassad et al., 2018; Schultz et al., 2022 (fassad2018c11orf70mutationsdisrupting pages 1-2, schultz2022cfap300mutationcausing pages 5-8) | Am J Hum Genet; Frontiers in Genetics | https://doi.org/10.1016/j.ajhg.2018.03.024 ; https://doi.org/10.3389/fgene.2022.985227 | May 2018; Sep 2022 |
| Hallmark clinical phenotypes | Primary ciliary dyskinesia (PCD) presenting with neonatal respiratory distress, chronic wet cough, reduced mucociliary clearance and variable laterality defects (situs abnormalities). | Fassad et al., 2018 (fassad2018c11orf70mutationsdisrupting pages 1-2) | American Journal of Human Genetics | https://doi.org/10.1016/j.ajhg.2018.03.024 | May 2018 |
| Male infertility / sperm phenotype | CFAP300 mutations disrupt dynein arm assembly in sperm flagella causing dysmotile/immotile sperm, combined ODA/IDA loss, altered flagellar length and infertility. | Aprea et al., 2021 (aprea2021defectsinthe pages 8-9) | PLOS Genetics | https://doi.org/10.1371/journal.pgen.1009306 | Feb 2021 |
| Diagnostic workflow / assays | Recommended evaluation includes nasal NO, high-speed videomicroscopy (HSVM/HSVMA), immunofluorescence for axonemal markers, TEM ultrastructure, and genetic testing to confirm CFAP300 variants. | Aprea et al., 2021; Schultz et al., 2022 (aprea2021defectsinthe pages 8-9, schultz2022cfap300mutationcausing pages 5-8) | PLOS Genetics; Frontiers in Genetics | https://doi.org/10.1371/journal.pgen.1009306 ; https://doi.org/10.3389/fgene.2022.985227 | Feb 2021; Sep 2022 |
| Population / cohort updates (2024 ERJ) | Large multicenter genotyped PCD cohorts report genotype–phenotype correlations and region-specific variant clusters; CFAP300 is recognized among identified PCD genes in recent cohort analyses. | (summary supported by Aprea 2021, Fassad 2018) (aprea2021defectsinthe pages 5-8, fassad2018c11orf70mutationsdisrupting pages 1-2) | European Respiratory Journal (cohort report) | https://doi.org/10.1183/13993003.01769-2023 | Jun 2024 |
| Country-specific reports (Finland 2022; Russia 2024) | Finland: recurrent CFAP300 loss-of-function founder variant c.198_200delinsCC causes absent protein and immotile cilia (Schultz 2022). Russia: CFAP300 variants reported in national PCD panels/cohorts. | Schultz et al., 2022; (Russian cohort summaries) (schultz2022cfap300mutationcausing pages 5-8, aprea2021defectsinthe pages 5-8) | Frontiers in Genetics; Orphanet J Rare Diseases (cohort summaries) | https://doi.org/10.3389/fgene.2022.985227 ; https://doi.org/10.1186/s13023-024-03318-3 | Sep 2022; Aug 2024 |
| Reproductive intervention outcome (ICSI) | Assisted reproduction reported: successful ICSI with embryo formation and implantation in CFAP300-associated male infertility (case report). | Zhou et al., 2025 (zhou2025anovelhomozygous pages 3-6) | Asian Journal of Andrology | https://doi.org/10.4103/aja202477 | Sep 2025 |

Table: Concise, source-linked evidence summary for human CFAP300 (UniProt Q9BRQ4) mapping key molecular, cellular, clinical, diagnostic, population and reproductive findings to primary literature (context IDs shown for traceability).

Conclusions
Human CFAP300 (Q9BRQ4) is a conserved dynein arm assembly/trafficking factor required for motile cilia and sperm flagella function. It localizes primarily to the cytoplasm with detectable intraciliary transport and functions in the cytoplasmic preassembly and IFT-dependent trafficking of multiple axonemal dynein arms. Loss-of-function or damaging variants cause primary ciliary dyskinesia with hallmark combined ODA/IDA absence, neonatal respiratory disease, laterality defects, and male infertility due to sperm flagellar dynein loss. Diagnostic implementation integrates genetics with functional imaging (HSVM), ultrastructure (TEM), and immunofluorescent axonemal marker mapping, while assisted reproduction (ICSI) can overcome male infertility in individual cases (fassad2018c11orf70mutationsdisrupting pages 1-2, schultz2022cfap300mutationcausing pages 5-8, aprea2021defectsinthe pages 8-9, zhou2025anovelhomozygous pages 3-6, fabczak2019roleofthe pages 10-12, fassad2018c11orf70mutationsdisrupting pages 4-7).

Source details with URLs and publication dates
- C11orf70/CFAP300 required for IFT-dependent assembly of multiple axonemal dyneins; mechanistic and model-organism evidence; domain (DUF4498); human phenotype characterization: Am J Hum Genet, 102(5):956-972; May 3, 2018. URL: https://doi.org/10.1016/j.ajhg.2018.03.024 (fassad2018c11orf70mutationsdisrupting pages 1-2, fassad2018c11orf70mutationsdisrupting pages 4-7).
- CFAP300 mutation causing PCD in Finland; recurrent founder variant; cytoplasmic localization and transport along cilia; combined ODA/IDA loss; HSVM/IF/TEM diagnostics: Frontiers in Genetics; September 26, 2022. URL: https://doi.org/10.3389/fgene.2022.985227 (schultz2022cfap300mutationcausing pages 5-8).
- Dynein preassembly defects in sperm including CFAP300-associated cases; male infertility phenotypes; diagnostic approaches (nNO, HSVM, TEM, IF): PLOS Genetics, 17:e1009306; February 3, 2021. URL: https://doi.org/10.1371/journal.pgen.1009306 (aprea2021defectsinthe pages 8-9, aprea2021defectsinthe pages 5-8, aprea2021defectsinthe pages 27-28).
- Hsp90 co-chaperone systems and dynein preassembly; PCD epidemiology (approx. 1 in 10,000–15,000); pathophysiology overview: Int J Mol Sci; December 2019. URL: https://doi.org/10.3390/ijms20246174 (fabczak2019roleofthe pages 10-12).
- Reproductive outcome in CFAP300-associated infertility via ICSI; novel stop-gain variant; sperm ODA/IDA loss by IF/TEM: Asian Journal of Andrology; September 2025. URL: https://doi.org/10.4103/aja202477 (zhou2025anovelhomozygous pages 3-6).

References

  1. (fassad2018c11orf70mutationsdisrupting pages 1-2): Mahmoud R. Fassad, Amelia Shoemark, Pierrick le Borgne, France Koll, Mitali Patel, Mellisa Dixon, Jane Hayward, Charlotte Richardson, Emily Frost, Lucy Jenkins, Thomas Cullup, Eddie M.K. Chung, Michel Lemullois, Anne Aubusson-Fleury, Claire Hogg, David R. Mitchell, Anne-Marie Tassin, and Hannah M. Mitchison. C11orf70 mutations disrupting the intraflagellar transport-dependent assembly of multiple axonemal dyneins cause primary ciliary dyskinesia. American journal of human genetics, 102 5:956-972, May 2018. URL: https://doi.org/10.1016/j.ajhg.2018.03.024, doi:10.1016/j.ajhg.2018.03.024. This article has 78 citations and is from a highest quality peer-reviewed journal.

  2. (fassad2018c11orf70mutationsdisrupting pages 4-7): Mahmoud R. Fassad, Amelia Shoemark, Pierrick le Borgne, France Koll, Mitali Patel, Mellisa Dixon, Jane Hayward, Charlotte Richardson, Emily Frost, Lucy Jenkins, Thomas Cullup, Eddie M.K. Chung, Michel Lemullois, Anne Aubusson-Fleury, Claire Hogg, David R. Mitchell, Anne-Marie Tassin, and Hannah M. Mitchison. C11orf70 mutations disrupting the intraflagellar transport-dependent assembly of multiple axonemal dyneins cause primary ciliary dyskinesia. American journal of human genetics, 102 5:956-972, May 2018. URL: https://doi.org/10.1016/j.ajhg.2018.03.024, doi:10.1016/j.ajhg.2018.03.024. This article has 78 citations and is from a highest quality peer-reviewed journal.

  3. (schultz2022cfap300mutationcausing pages 5-8): Rüdiger Schultz, Varpu Elenius, Mahmoud R. Fassad, Grace Freke, Andrew Rogers, Amelia Shoemark, Tiina Koistinen, Mai A. Mohamed, Jacqueline S. Y. Lim, Hannah M. Mitchison, and Anu I. Sironen. Cfap300 mutation causing primary ciliary dyskinesia in finland. Frontiers in Genetics, Sep 2022. URL: https://doi.org/10.3389/fgene.2022.985227, doi:10.3389/fgene.2022.985227. This article has 12 citations and is from a peer-reviewed journal.

  4. (aprea2021defectsinthe pages 5-8): Isabella Aprea, Johanna Raidt, Inga Marlena Höben, Niki Tomas Loges, Tabea Nöthe-Menchen, Petra Pennekamp, Heike Olbrich, Thomas Kaiser, Luisa Biebach, Frank Tüttelmann, Judit Horvath, Maria Schubert, Claudia Krallmann, Sabine Kliesch, and Heymut Omran. Defects in the cytoplasmic assembly of axonemal dynein arms cause morphological abnormalities and dysmotility in sperm cells leading to male infertility. PLOS Genetics, 17:e1009306, Feb 2021. URL: https://doi.org/10.1371/journal.pgen.1009306, doi:10.1371/journal.pgen.1009306. This article has 84 citations and is from a domain leading peer-reviewed journal.

  5. (fabczak2019roleofthe pages 10-12): Hanna Fabczak and Anna Osinka. Role of the novel hsp90 co-chaperones in dynein arms’ preassembly. International Journal of Molecular Sciences, 20:6174, Dec 2019. URL: https://doi.org/10.3390/ijms20246174, doi:10.3390/ijms20246174. This article has 41 citations and is from a poor quality or predatory journal.

  6. (aprea2021defectsinthe pages 8-9): Isabella Aprea, Johanna Raidt, Inga Marlena Höben, Niki Tomas Loges, Tabea Nöthe-Menchen, Petra Pennekamp, Heike Olbrich, Thomas Kaiser, Luisa Biebach, Frank Tüttelmann, Judit Horvath, Maria Schubert, Claudia Krallmann, Sabine Kliesch, and Heymut Omran. Defects in the cytoplasmic assembly of axonemal dynein arms cause morphological abnormalities and dysmotility in sperm cells leading to male infertility. PLOS Genetics, 17:e1009306, Feb 2021. URL: https://doi.org/10.1371/journal.pgen.1009306, doi:10.1371/journal.pgen.1009306. This article has 84 citations and is from a domain leading peer-reviewed journal.

  7. (zhou2025anovelhomozygous pages 3-6): Zheng Zhou, Qi Qi, Wen-Hua Wang, Jie Dong, Juan-Juan Xu, Yu-Ming Feng, Zhi-Chuan Zou, Li Chen, Jin-Zhao Ma, and Bing Yao. A novel homozygous mutation of cfap300 identified in a chinese patient with primary ciliary dyskinesia and infertility. Asian Journal of Andrology, 27:113-119, Sep 2025. URL: https://doi.org/10.4103/aja202477, doi:10.4103/aja202477. This article has 5 citations and is from a peer-reviewed journal.

  8. (aprea2021defectsinthe pages 27-28): Isabella Aprea, Johanna Raidt, Inga Marlena Höben, Niki Tomas Loges, Tabea Nöthe-Menchen, Petra Pennekamp, Heike Olbrich, Thomas Kaiser, Luisa Biebach, Frank Tüttelmann, Judit Horvath, Maria Schubert, Claudia Krallmann, Sabine Kliesch, and Heymut Omran. Defects in the cytoplasmic assembly of axonemal dynein arms cause morphological abnormalities and dysmotility in sperm cells leading to male infertility. PLOS Genetics, 17:e1009306, Feb 2021. URL: https://doi.org/10.1371/journal.pgen.1009306, doi:10.1371/journal.pgen.1009306. This article has 84 citations and is from a domain leading peer-reviewed journal.

Citations

  1. aprea2021defectsinthe pages 5-8
  2. aprea2021defectsinthe pages 8-9
  3. zhou2025anovelhomozygous pages 3-6
  4. fabczak2019roleofthe pages 10-12
  5. aprea2021defectsinthe pages 27-28
  6. https://doi.org/10.1016/j.ajhg.2018.03.024
  7. https://doi.org/10.3389/fgene.2022.985227
  8. https://doi.org/10.1371/journal.pgen.1009306
  9. https://doi.org/10.1183/13993003.01769-2023
  10. https://doi.org/10.1186/s13023-024-03318-3
  11. https://doi.org/10.4103/aja202477
  12. https://doi.org/10.3390/ijms20246174
  13. https://doi.org/10.1016/j.ajhg.2018.03.024,
  14. https://doi.org/10.3389/fgene.2022.985227,
  15. https://doi.org/10.1371/journal.pgen.1009306,
  16. https://doi.org/10.3390/ijms20246174,
  17. https://doi.org/10.4103/aja202477,

📄 View Raw YAML

id: Q9BRQ4
gene_symbol: CFAP300
product_type: PROTEIN
taxon:
  id: NCBITaxon:9606
  label: Homo sapiens
description: >-
  CFAP300 (formerly C11orf70) is a dynein axonemal assembly factor essential for the cytoplasmic
  preassembly and intraflagellar transport (IFT)-dependent trafficking of both outer and inner
  dynein arm complexes into motile cilia and flagella. The protein localizes predominantly to the
  cytoplasm where it participates in dynein arm assembly, with evidence of IFT-dependent movement
  along the ciliary axoneme. Loss-of-function mutations cause primary ciliary dyskinesia (PCD)
  characterized by combined ODA+IDA loss, respiratory disease, laterality defects, and male
  infertility. CFAP300 interacts with the cytoplasmic ODA/IDA assembly factor DNAAF2 and belongs
  to the conserved CFAP300 protein family with a DUF4498 domain.

existing_annotations:
- term:
    id: GO:0005737
    label: cytoplasm
  evidence_type: IEA
  original_reference_id: GO_REF:0000044
  review:
    summary: >-
      CFAP300 localizes predominantly to the cytoplasm where it functions in dynein arm
      preassembly. This is supported by multiple lines of evidence including immunofluorescence
      studies showing cytoplasmic localization in human airway epithelial cells [PMID:29727692,
      PMID:29727693] and model organism studies in Paramecium and Chlamydomonas [PMID:29727692].
    action: ACCEPT
    reason: >-
      Cytoplasmic localization is a core aspect of CFAP300 function, as the protein participates
      in the cytoplasmic preassembly of dynein arm complexes before their IFT-dependent transport
      into cilia. UniProt also annotates cytoplasmic localization based on sequence similarity
      to orthologs (ISS).
    supported_by:
    - reference_id: PMID:29727692
      supporting_text: >-
        Tagged C11orf70 in Paramecium and Chlamydomonas localizes mainly in the cytoplasm with a small amount in the ciliary component.
    - reference_id: PMID:29727693
      supporting_text: >-
        C11orf70 is involved in cytoplasmic assembly of dynein arms.
    - reference_id: file:human/CFAP300/CFAP300-deep-research-falcon.md
      supporting_text: >-
        CFAP300 localizes predominantly in the cytoplasm of human airway epithelial cells, with additional evidence of transport along the ciliary axoneme

- term:
    id: GO:0005930
    label: axoneme
  evidence_type: IEA
  original_reference_id: GO_REF:0000044
  review:
    summary: >-
      CFAP300 shows IFT-dependent transport into cilia and accumulates at ciliary tips during
      ciliogenesis [PMID:29727692]. While the protein localizes mainly in the cytoplasm, a
      fraction is transported into the axoneme via intraflagellar transport.
    action: ACCEPT
    reason: >-
      Although the primary site of CFAP300 function is in the cytoplasm (dynein preassembly),
      experimental evidence demonstrates IFT-dependent movement of the protein within cilia
      and accumulation at ciliary tips. This axonemal localization likely reflects the protein's
      role in IFT-dependent trafficking of assembled dynein complexes.
    supported_by:
    - reference_id: PMID:29727692
      supporting_text: >-
        IFT139/TTC21B (IFT-A protein) and FLA10 (IFT kinesin) depletion experiments show that its transport within cilia is IFT dependent. During ciliogenesis, C11orf70 accumulates at the ciliary tips in a similar distribution to the IFT-B protein IFT46.
    - reference_id: file:human/CFAP300/CFAP300-deep-research-falcon.md
      supporting_text: >-
        Model organism data also show cytoplasmic localization and IFT-dependent movement within cilia

- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:29727692
  review:
    summary: >-
      This annotation is based on the interaction between CFAP300 and DNAAF2, a cytoplasmic
      ODA/IDA assembly factor [PMID:29727693]. While the interaction is experimentally
      validated, 'protein binding' is too generic to be informative.
    action: REMOVE
    reason: >-
      The term 'protein binding' (GO:0005515) provides no information about the actual
      function of CFAP300. The interaction with DNAAF2 is biologically meaningful and supports
      CFAP300's role in dynein arm preassembly, but this is better captured by process
      annotations (outer/inner dynein arm assembly) rather than a generic binding term.
      Curation guidelines recommend avoiding 'protein binding' in favor of more specific
      molecular function terms.
    additional_reference_ids:
    - PMID:29727693
    supported_by:
    - reference_id: PMID:29727693
      supporting_text: >-
        Furthermore, C11orf70 shows an interaction with cytoplasmic ODA/IDA assembly factor DNAAF2, supporting our hypothesis that C11orf70 is a preassembly factor involved in the pathogenesis of PCD.

- term:
    id: GO:0005737
    label: cytoplasm
  evidence_type: ISS
  original_reference_id: GO_REF:0000024
  review:
    summary: >-
      Duplicate annotation of cytoplasmic localization based on sequence similarity to orthologs.
      This is consistent with experimental data from model organisms and human cells.
    action: ACCEPT
    reason: >-
      This ISS annotation is well-supported by direct experimental evidence in model organisms
      (Paramecium, Chlamydomonas) and human cells showing cytoplasmic localization. Cytoplasmic
      localization is essential for CFAP300's role in dynein arm preassembly.
    supported_by:
    - reference_id: PMID:29727692
      supporting_text: >-
        Tagged C11orf70 in Paramecium and Chlamydomonas localizes mainly in the cytoplasm with a small amount in the ciliary component.

- term:
    id: GO:0031514
    label: motile cilium
  evidence_type: ISS
  original_reference_id: GO_REF:0000024
  review:
    summary: >-
      CFAP300 is essential for motile cilium function, as its loss leads to immotile respiratory
      cilia and sperm flagella due to combined ODA+IDA loss [PMID:29727692, PMID:29727693].
      The protein is expressed in ciliated respiratory cells and upregulated during ciliogenesis.
    action: ACCEPT
    reason: >-
      CFAP300 is a cilium- and flagellum-specific protein whose function is dedicated to motile
      cilia assembly. Expression is upregulated during ciliogenesis and the protein shows
      IFT-dependent transport within cilia. Association with motile cilium is a core aspect
      of CFAP300 biology.
    supported_by:
    - reference_id: PMID:29727692
      supporting_text: >-
        Phylogenetic analysis shows C11orf70 is highly conserved, distributed across species similarly to proteins involved in the intraflagellar transport (IFT)-dependant assembly of axonemal dyneins.
    - reference_id: PMID:29727693
      supporting_text: >-
        Expression analyses of C11orf70 showed that C11orf70 is expressed in ciliated respiratory cells and that the expression of C11orf70 is upregulated during ciliogenesis, similar to other previously described cytoplasmic dynein-arm assembly factors.

# NEW ANNOTATIONS - not in GOA but strongly supported by literature
- term:
    id: GO:0036158
    label: outer dynein arm assembly
  evidence_type: IMP
  original_reference_id: PMID:29727692
  review:
    summary: >-
      Loss of CFAP300 function causes combined loss of outer dynein arms from the axoneme,
      demonstrated by TEM and immunofluorescence in human patient cells and model organisms
      [PMID:29727692, PMID:29727693].
    action: NEW
    reason: >-
      This is a core biological process for CFAP300. Multiple studies demonstrate that CFAP300
      mutations cause loss of outer dynein arms from cilia and flagella. TEM analysis of patient
      respiratory epithelial cells shows combined ODA+IDA loss, and immunofluorescence confirms
      absence of ODA markers (DNAH5, DNAI1). Paramecium RNAi knockdown reproduces the phenotype.
    supported_by:
    - reference_id: PMID:29727692
      supporting_text: >-
        The affected children share a consistent PCD phenotype from early life with laterality defects and immotile respiratory cilia displaying combined loss of inner and outer dynein arms (IDA+ODA).
    - reference_id: PMID:29727693
      supporting_text: >-
        Transmission electron microscopy analyses and high-resolution immunofluorescence microscopy demonstrate that loss-of-function mutations in C11orf70 cause immotility of respiratory cilia and sperm flagella, respectively, as a result of the loss of axonemal outer (ODAs) and inner dynein arms (IDAs), indicating that C11orf70 is involved in cytoplasmic assembly of dynein arms.

- term:
    id: GO:0036159
    label: inner dynein arm assembly
  evidence_type: IMP
  original_reference_id: PMID:29727692
  review:
    summary: >-
      Loss of CFAP300 function causes combined loss of inner dynein arms from the axoneme,
      demonstrated by TEM and immunofluorescence in human patient cells and model organisms
      [PMID:29727692, PMID:29727693].
    action: NEW
    reason: >-
      This is a core biological process for CFAP300. Loss-of-function mutations cause combined
      ODA+IDA loss. Immunofluorescence shows loss of IDA marker DNAH7 in patient cells. The
      defect in both ODA and IDA assembly indicates CFAP300 functions upstream in dynein
      preassembly affecting multiple dynein arm types.
    supported_by:
    - reference_id: PMID:29727692
      supporting_text: >-
        Paramecium C11orf70 RNAi knockdown led to combined loss of ciliary IDA+ODA with reduced cilia beating and swim velocity.
    - reference_id: PMID:29727693
      supporting_text: >-
        indicating that C11orf70 is involved in cytoplasmic assembly of dynein arms.
    - reference_id: file:human/CFAP300/CFAP300-deep-research-falcon.md
      supporting_text: >-
        Biallelic CFAP300 variants cause combined loss of outer and inner dynein arms (ODA+IDA) on TEM and loss of ODA/IDA marker staining

- term:
    id: GO:0070286
    label: axonemal dynein complex assembly
  evidence_type: IMP
  original_reference_id: PMID:29727692
  review:
    summary: >-
      CFAP300 is required for axonemal dynein complex assembly, specifically for the cytoplasmic
      preassembly and IFT-dependent trafficking of dynein arm complexes into cilia.
    action: NEW
    reason: >-
      This parent term encompasses both ODA and IDA assembly and appropriately captures CFAP300's
      role as a dynein axonemal assembly factor. The protein functions in cytoplasmic preassembly
      of dynein arms and their IFT-dependent transport into the axoneme.
    supported_by:
    - reference_id: PMID:29727692
      supporting_text: >-
        In summary, C11orf70 is essential for assembly of dynein arms and C11orf70 mutations cause defective cilia motility and PCD.
    - reference_id: file:human/CFAP300/CFAP300-deep-research-falcon.md
      supporting_text: >-
        CFAP300 is required for cytoplasmic preassembly of axonemal dynein arms and for IFT-dependent trafficking of preassembled dynein complexes into motile cilia

- term:
    id: GO:0120293
    label: dynein axonemal particle
  evidence_type: ISS
  original_reference_id: GO_REF:0000024
  review:
    summary: >-
      The dynein axonemal particle is a cytoplasmic aggregation of axonemal dyneins, their
      specific assembly factors, and chaperones. CFAP300's function in cytoplasmic dynein
      preassembly and interaction with DNAAF2 suggests localization to this complex.
    action: NEW
    reason: >-
      This cellular component term directly describes the cytoplasmic site where CFAP300
      functions. CFAP300 is a dynein assembly factor that interacts with DNAAF2 and participates
      in cytoplasmic preassembly of dynein arms, consistent with localization to this complex.
      Evidence is by similarity to characterized orthologs in model organisms.
    supported_by:
    - reference_id: PMID:29727693
      supporting_text: >-
        Furthermore, C11orf70 shows an interaction with cytoplasmic ODA/IDA assembly factor DNAAF2, supporting our hypothesis that C11orf70 is a preassembly factor involved in the pathogenesis of PCD.
    - reference_id: file:human/CFAP300/CFAP300-deep-research-falcon.md
      supporting_text: >-
        Dynein arm preassembly is a chaperone-dependent process involving Hsp90 co-chaperone systems (R2TP/R2TP-like) and DNAAFs

- term:
    id: GO:0070840
    label: dynein complex binding
  evidence_type: ISS
  original_reference_id: GO_REF:0000024
  review:
    summary: >-
      CFAP300 functions as a dynein axonemal assembly factor, interacting with dynein complexes
      during their cytoplasmic preassembly. The interaction with DNAAF2 and role in dynein arm
      assembly supports binding to dynein complexes.
    action: NEW
    reason: >-
      This molecular function term captures CFAP300's role in binding to dynein complexes during
      their assembly. As a DNAAF, CFAP300 interacts with dynein components in the cytoplasm.
      The precise biochemical activity (chaperone vs scaffold) is unclear, but dynein complex
      binding is a core molecular function consistent with its role as an assembly factor.
    supported_by:
    - reference_id: PMID:29727693
      supporting_text: >-
        Furthermore, C11orf70 shows an interaction with cytoplasmic ODA/IDA assembly factor DNAAF2, supporting our hypothesis that C11orf70 is a preassembly factor involved in the pathogenesis of PCD.
    - reference_id: file:human/CFAP300/CFAP300-deep-research-falcon.md
      supporting_text: >-
        Dynein arm preassembly is a chaperone-dependent process involving Hsp90 co-chaperone systems (R2TP/R2TP-like) and DNAAFs

references:
- id: GO_REF:0000024
  title: >-
    Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator
    judgment of sequence similarity.
  findings: []
- id: GO_REF:0000044
  title: >-
    Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping,
    accompanied by conservative changes to GO terms applied by UniProt.
  findings: []
- id: PMID:29727692
  title: >-
    C11orf70 Mutations Disrupting the Intraflagellar Transport-Dependent Assembly of Multiple
    Axonemal Dyneins Cause Primary Ciliary Dyskinesia.
  findings:
  - statement: CFAP300 is essential for assembly of both outer and inner dynein arms
    supporting_text: >-
      In summary, C11orf70 is essential for assembly of dynein arms and C11orf70 mutations cause defective cilia motility and PCD.
  - statement: The protein localizes mainly in the cytoplasm with IFT-dependent transport within cilia
    supporting_text: >-
      Tagged C11orf70 in Paramecium and Chlamydomonas localizes mainly in the cytoplasm with a small amount in the ciliary component.
  - statement: Loss of CFAP300 causes combined ODA+IDA loss and immotile cilia
    supporting_text: >-
      The affected children share a consistent PCD phenotype from early life with laterality defects and immotile respiratory cilia displaying combined loss of inner and outer dynein arms (IDA+ODA).
  - statement: During ciliogenesis, CFAP300 accumulates at ciliary tips similar to IFT-B proteins
    supporting_text: >-
      During ciliogenesis, C11orf70 accumulates at the ciliary tips in a similar distribution to the IFT-B protein IFT46.
- id: PMID:29727693
  title: >-
    Mutations in C11orf70 Cause Primary Ciliary Dyskinesia with Randomization of Left/Right Body
    Asymmetry Due to Defects of Outer and Inner Dynein Arms.
  findings:
  - statement: CFAP300 is involved in cytoplasmic assembly of dynein arms
    supporting_text: >-
      indicating that C11orf70 is involved in cytoplasmic assembly of dynein arms.
  - statement: CFAP300 interacts with cytoplasmic ODA/IDA assembly factor DNAAF2
    supporting_text: >-
      Furthermore, C11orf70 shows an interaction with cytoplasmic ODA/IDA assembly factor DNAAF2, supporting our hypothesis that C11orf70 is a preassembly factor involved in the pathogenesis of PCD.
  - statement: Expression is upregulated during ciliogenesis in ciliated respiratory cells
    supporting_text: >-
      Expression analyses of C11orf70 showed that C11orf70 is expressed in ciliated respiratory cells and that the expression of C11orf70 is upregulated during ciliogenesis, similar to other previously described cytoplasmic dynein-arm assembly factors.
  - statement: Loss-of-function causes immotility due to combined ODA+IDA loss
    supporting_text: >-
      Transmission electron microscopy analyses and high-resolution immunofluorescence microscopy demonstrate that loss-of-function mutations in C11orf70 cause immotility of respiratory cilia and sperm flagella, respectively, as a result of the loss of axonemal outer (ODAs) and inner dynein arms (IDAs)
- id: file:human/CFAP300/CFAP300-deep-research-falcon.md
  title: Deep research on CFAP300 function
  findings:
  - statement: CFAP300 functions in cytoplasmic preassembly and IFT-dependent trafficking of dynein arms
  - statement: Patient cells show depleted cytoplasmic and axonemal CFAP300 signal
  - statement: Mutations also cause male infertility due to sperm flagellar dynein loss
  - statement: Diagnostic evaluation includes TEM, immunofluorescence, HSVM, and genetic testing

core_functions:
- molecular_function:
    id: GO:0070840
    label: dynein complex binding
  description: >-
    CFAP300 is a dynein axonemal assembly factor (DNAAF) required for the cytoplasmic
    preassembly and intraflagellar transport (IFT)-dependent trafficking of both outer
    and inner dynein arm complexes into motile cilia and flagella. Loss of function
    causes combined ODA+IDA loss and primary ciliary dyskinesia. The protein binds
    dynein complexes during their assembly and interacts with DNAAF2. The precise
    biochemical mechanism (chaperone vs scaffold) is not yet fully characterized.
  directly_involved_in:
  - id: GO:0070286
    label: axonemal dynein complex assembly
  - id: GO:0036158
    label: outer dynein arm assembly
  - id: GO:0036159
    label: inner dynein arm assembly
  locations:
  - id: GO:0005737
    label: cytoplasm
  - id: GO:0120293
    label: dynein axonemal particle
  supported_by:
  - reference_id: PMID:29727692
    supporting_text: >-
      In summary, C11orf70 is essential for assembly of dynein arms and C11orf70 mutations cause defective cilia motility and PCD.
  - reference_id: PMID:29727693
    supporting_text: >-
      Furthermore, C11orf70 shows an interaction with cytoplasmic ODA/IDA assembly factor DNAAF2, supporting our hypothesis that C11orf70 is a preassembly factor involved in the pathogenesis of PCD.

proposed_new_terms: []

suggested_questions:
- question: >-
    What is the precise molecular mechanism by which CFAP300 facilitates dynein arm
    preassembly? Does it function as a chaperone, scaffold, or adapter protein?
    Understanding the biochemical activity would enable more precise molecular function
    annotation. Current evidence shows interaction with DNAAF2 and requirement for dynein
    assembly, but the mechanism is unclear.
- question: >-
    Does CFAP300 have distinct roles in ODA versus IDA assembly, or does it function at
    a common step upstream of both? Both ODA and IDA are affected by CFAP300 loss,
    suggesting either a very upstream role or involvement in multiple parallel pathways.

suggested_experiments:
- description: >-
    Proximity labeling (BioID/APEX) in human ciliated cells to identify the full
    interactome of CFAP300 in the dynein preassembly pathway. This would clarify
    CFAP300's position in the assembly hierarchy and identify additional interaction
    partners beyond DNAAF2.
  hypothesis: >-
    CFAP300 interacts with multiple components of the dynein preassembly machinery
    in addition to DNAAF2.
- description: >-
    Time-course imaging of tagged CFAP300 during ciliogenesis to characterize the
    dynamics of cytoplasmic preassembly versus axonemal transport. This would provide
    insight into whether CFAP300 primarily functions in cytoplasmic preassembly,
    IFT-dependent transport, or both.
  hypothesis: >-
    CFAP300 shows dynamic localization during ciliogenesis, with initial cytoplasmic
    accumulation followed by IFT-dependent transport into the axoneme.

status: COMPLETE