CHMP4A encodes a Snf7-family core subunit of ESCRT-III. Its best-supported function is non-enzymatic ESCRT-III polymerization on endosomal/MVB and related membranes, where CHMP4A-containing filaments bend membranes and support reverse-topology budding/fission for intraluminal vesicle formation, MVB cargo sorting, and downstream endolysosomal degradation. CHMP4A also participates in autophagy/autophagosome contexts, plasma membrane repair, cytokinetic abscission, nuclear envelope repair, and viral budding as topologically related ESCRT output contexts, but those should not obscure the core ESCRT-III membrane-remodeling role.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0005635
nuclear envelope
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: nuclear envelope.
Reason: Nuclear envelope or nuclear pore repair/reassembly is a supported ESCRT-III context but is secondary to CHMP4A core ESCRT-III membrane-remodeling function.
Supporting Evidence:
PMID:26040713
ESCRT-III controls nuclear envelope reformation
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0031468
nuclear membrane reassembly
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: nuclear membrane reassembly.
Reason: Nuclear envelope or nuclear pore repair/reassembly is a supported ESCRT-III context but is secondary to CHMP4A core ESCRT-III membrane-remodeling function.
Supporting Evidence:
PMID:26040713
ESCRT-III controls nuclear envelope reformation
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0000815
ESCRT III complex
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: ESCRT III complex.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
PMID:18209100
ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
PMID:18209100
Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
|
|
GO:0009898
cytoplasmic side of plasma membrane
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: cytoplasmic side of plasma membrane.
Reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
Supporting Evidence:
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
|
|
GO:0032511
late endosome to vacuole transport via multivesicular body sorting pathway
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: late endosome to vacuole transport via multivesicular body sorting pathway.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
PMID:18209100
ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
PMID:18209100
Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
|
|
GO:0000776
kinetochore
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: kinetochore.
Reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
Supporting Evidence:
PMID:22724069
Borealin interacts directly with the Snf7 components of ESCRT-III
PMID:22724069
controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0001778
plasma membrane repair
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: plasma membrane repair.
Reason: Plasma membrane repair is a valid ESCRT output context, but the core CHMP4A function remains ESCRT-III membrane remodeling in endosomal/MVB and related compartments.
Supporting Evidence:
PMID:24482116
ESCRT proteins were recruited within seconds to plasma membrane wounds
PMID:24482116
repair of certain wounds is ensured by ESCRT-mediated extracellular shedding of wounded portions
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0005643
nuclear pore
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: nuclear pore.
Reason: Nuclear envelope or nuclear pore repair/reassembly is a supported ESCRT-III context but is secondary to CHMP4A core ESCRT-III membrane-remodeling function.
Supporting Evidence:
PMID:26040713
ESCRT-III controls nuclear envelope reformation
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0005765
lysosomal membrane
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Supported PN-relevant autophagy/endolysosomal CHMP4A context: lysosomal membrane.
Reason: CHMP4A/Snf7-1 depletion causes autophagosome accumulation in human neurons, and ESCRT/MVB function is required for autophagic degradation; this supports retaining autophagy and autophagosome-context annotations without claiming CHMP4A alone was directly assayed as the phagophore-sealing effector.
Supporting Evidence:
PMID:21975012
SiRNA knockdown of hSnf7-1 in human neurons leads to autophagosome accumulation
PMID:17984323
Functional multivesicular bodies are required for autophagic clearance
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0005828
kinetochore microtubule
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: kinetochore microtubule.
Reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
Supporting Evidence:
PMID:22724069
Borealin interacts directly with the Snf7 components of ESCRT-III
PMID:22724069
controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0007034
vacuolar transport
|
IEA
GO_REF:0000002 |
MODIFY |
Summary: The broad vacuolar transport label is less precise than CHMP4A MVB/endosomal sorting function.
Reason: CHMP4A is best represented by ESCRT-III-mediated MVB sorting and ILV/membrane fission, not generic vacuolar transport.
Proposed replacements:
multivesicular body sorting pathway
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
|
|
GO:0007080
mitotic metaphase chromosome alignment
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: mitotic metaphase chromosome alignment.
Reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
Supporting Evidence:
PMID:22724069
Borealin interacts directly with the Snf7 components of ESCRT-III
PMID:22724069
controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0030496
midbody
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: midbody.
Reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
Supporting Evidence:
PMID:22724069
Borealin interacts directly with the Snf7 components of ESCRT-III
PMID:22724069
controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0030659
cytoplasmic vesicle membrane
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: cytoplasmic vesicle membrane.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
PMID:18209100
ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
PMID:18209100
Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
|
|
GO:0031468
nuclear membrane reassembly
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: nuclear membrane reassembly.
Reason: Nuclear envelope or nuclear pore repair/reassembly is a supported ESCRT-III context but is secondary to CHMP4A core ESCRT-III membrane-remodeling function.
Supporting Evidence:
PMID:26040713
ESCRT-III controls nuclear envelope reformation
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0031902
late endosome membrane
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: late endosome membrane.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
PMID:18209100
ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
PMID:18209100
Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
|
|
GO:0032585
multivesicular body membrane
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: multivesicular body membrane.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
PMID:18209100
ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
PMID:18209100
Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
|
|
GO:0036258
multivesicular body assembly
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: multivesicular body assembly.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
PMID:18209100
ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
PMID:18209100
Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
|
|
GO:0039702
viral budding via host ESCRT complex
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: viral budding via host ESCRT complex.
Reason: Viral budding is directly supported as ESCRT hijacking but is not an endogenous core CHMP4A proteostasis function.
Supporting Evidence:
PMID:18511562
ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex
PMID:24878737
Structure of cellular ESCRT-III spirals and their relationship to HIV budding
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0042803
protein homodimerization activity
|
IEA
GO_REF:0000117 |
MODIFY |
Summary: protein homodimerization activity captures CHMP4A self-association but is less accurate than ESCRT-III polymerization and membrane bending.
Reason: CHMP4A forms curved ESCRT-III filaments/polymers that bend membranes; homodimer or identical-protein binding terms are weaker molecular descriptions.
Proposed replacements:
protein polymerization
membrane bending activity
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
|
|
GO:0043162
ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
PMID:18209100
ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
PMID:18209100
Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
|
|
GO:0046761
viral budding from plasma membrane
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: viral budding from plasma membrane.
Reason: Viral budding is directly supported as ESCRT hijacking but is not an endogenous core CHMP4A proteostasis function.
Supporting Evidence:
PMID:18511562
ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex
PMID:24878737
Structure of cellular ESCRT-III spirals and their relationship to HIV budding
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0061952
midbody abscission
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: midbody abscission.
Reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
Supporting Evidence:
PMID:22724069
Borealin interacts directly with the Snf7 components of ESCRT-III
PMID:22724069
controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0071985
multivesicular body sorting pathway
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: multivesicular body sorting pathway.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
PMID:18209100
ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
PMID:18209100
Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
|
|
GO:0097352
autophagosome maturation
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Supported PN-relevant autophagy/endolysosomal CHMP4A context: autophagosome maturation.
Reason: CHMP4A/Snf7-1 depletion causes autophagosome accumulation in human neurons, and ESCRT/MVB function is required for autophagic degradation; this supports retaining autophagy and autophagosome-context annotations without claiming CHMP4A alone was directly assayed as the phagophore-sealing effector.
Supporting Evidence:
PMID:21975012
SiRNA knockdown of hSnf7-1 in human neurons leads to autophagosome accumulation
PMID:17984323
Functional multivesicular bodies are required for autophagic clearance
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:1901673
regulation of mitotic spindle assembly
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: regulation of mitotic spindle assembly.
Reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
Supporting Evidence:
PMID:22724069
Borealin interacts directly with the Snf7 components of ESCRT-III
PMID:22724069
controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:1902774
late endosome to lysosome transport
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Supported PN-relevant autophagy/endolysosomal CHMP4A context: late endosome to lysosome transport.
Reason: CHMP4A/Snf7-1 depletion causes autophagosome accumulation in human neurons, and ESCRT/MVB function is required for autophagic degradation; this supports retaining autophagy and autophagosome-context annotations without claiming CHMP4A alone was directly assayed as the phagophore-sealing effector.
Supporting Evidence:
PMID:21975012
SiRNA knockdown of hSnf7-1 in human neurons leads to autophagosome accumulation
PMID:17984323
Functional multivesicular bodies are required for autophagic clearance
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:1904930
amphisome membrane
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Supported PN-relevant autophagy/endolysosomal CHMP4A context: amphisome membrane.
Reason: CHMP4A/Snf7-1 depletion causes autophagosome accumulation in human neurons, and ESCRT/MVB function is required for autophagic degradation; this supports retaining autophagy and autophagosome-context annotations without claiming CHMP4A alone was directly assayed as the phagophore-sealing effector.
Supporting Evidence:
PMID:21975012
SiRNA knockdown of hSnf7-1 in human neurons leads to autophagosome accumulation
PMID:17984323
Functional multivesicular bodies are required for autophagic clearance
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0005515
protein binding
|
IPI
PMID:16189514 Towards a proteome-scale map of the human protein-protein in... |
MARK AS OVER ANNOTATED |
Summary: Generic protein binding is not informative for CHMP4A: protein binding.
Reason: CHMP4A has real ESCRT, ALIX, Borealin, VPS4, and high-throughput interactions, but the curated function should describe ESCRT-III polymerization, membrane bending/fission, and specific ESCRT-complex contexts rather than plain protein binding.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
PMID:18511562
Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins (CHMP4A-C)
PMID:18209100
assemble into regular approximately 5-nm filaments that curve and self-associate
PMID:18209100
proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
|
|
GO:0005515
protein binding
|
IPI
PMID:16730941 A systematic analysis of human CHMP protein interactions: ad... |
MARK AS OVER ANNOTATED |
Summary: Generic protein binding is not informative for CHMP4A: protein binding.
Reason: CHMP4A has real ESCRT, ALIX, Borealin, VPS4, and high-throughput interactions, but the curated function should describe ESCRT-III polymerization, membrane bending/fission, and specific ESCRT-complex contexts rather than plain protein binding.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
PMID:18511562
Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins (CHMP4A-C)
PMID:18209100
assemble into regular approximately 5-nm filaments that curve and self-associate
PMID:18209100
proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
|
|
GO:0005515
protein binding
|
IPI
PMID:17350572 Structural and biochemical studies of ALIX/AIP1 and its role... |
MARK AS OVER ANNOTATED |
Summary: Generic protein binding is not informative for CHMP4A: protein binding.
Reason: CHMP4A has real ESCRT, ALIX, Borealin, VPS4, and high-throughput interactions, but the curated function should describe ESCRT-III polymerization, membrane bending/fission, and specific ESCRT-complex contexts rather than plain protein binding.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
PMID:18511562
Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins (CHMP4A-C)
PMID:18209100
assemble into regular approximately 5-nm filaments that curve and self-associate
PMID:18209100
proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
|
|
GO:0005515
protein binding
|
IPI
PMID:18511562 ALIX-CHMP4 interactions in the human ESCRT pathway. |
MARK AS OVER ANNOTATED |
Summary: Generic protein binding is not informative for CHMP4A: protein binding.
Reason: CHMP4A has real ESCRT, ALIX, Borealin, VPS4, and high-throughput interactions, but the curated function should describe ESCRT-III polymerization, membrane bending/fission, and specific ESCRT-complex contexts rather than plain protein binding.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
PMID:18511562
Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins (CHMP4A-C)
PMID:18209100
assemble into regular approximately 5-nm filaments that curve and self-associate
PMID:18209100
proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
|
|
GO:0005515
protein binding
|
IPI
PMID:25416956 A proteome-scale map of the human interactome network. |
MARK AS OVER ANNOTATED |
Summary: Generic protein binding is not informative for CHMP4A: protein binding.
Reason: CHMP4A has real ESCRT, ALIX, Borealin, VPS4, and high-throughput interactions, but the curated function should describe ESCRT-III polymerization, membrane bending/fission, and specific ESCRT-complex contexts rather than plain protein binding.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
PMID:18511562
Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins (CHMP4A-C)
PMID:18209100
assemble into regular approximately 5-nm filaments that curve and self-associate
PMID:18209100
proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
|
|
GO:0005515
protein binding
|
IPI
PMID:31515488 Extensive disruption of protein interactions by genetic vari... |
MARK AS OVER ANNOTATED |
Summary: Generic protein binding is not informative for CHMP4A: protein binding.
Reason: CHMP4A has real ESCRT, ALIX, Borealin, VPS4, and high-throughput interactions, but the curated function should describe ESCRT-III polymerization, membrane bending/fission, and specific ESCRT-complex contexts rather than plain protein binding.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
PMID:18511562
Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins (CHMP4A-C)
PMID:18209100
assemble into regular approximately 5-nm filaments that curve and self-associate
PMID:18209100
proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
|
|
GO:0000421
autophagosome membrane
|
IDA
PMID:17984323 Functional multivesicular bodies are required for autophagic... |
ACCEPT |
Summary: Supported PN-relevant autophagy/endolysosomal CHMP4A context: autophagosome membrane.
Reason: CHMP4A/Snf7-1 depletion causes autophagosome accumulation in human neurons, and ESCRT/MVB function is required for autophagic degradation; this supports retaining autophagy and autophagosome-context annotations without claiming CHMP4A alone was directly assayed as the phagophore-sealing effector.
Supporting Evidence:
PMID:21975012
SiRNA knockdown of hSnf7-1 in human neurons leads to autophagosome accumulation
PMID:17984323
Functional multivesicular bodies are required for autophagic clearance
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0000776
kinetochore
|
IDA
PMID:26040712 Spastin and ESCRT-III coordinate mitotic spindle disassembly... |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: kinetochore.
Reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
Supporting Evidence:
PMID:22724069
Borealin interacts directly with the Snf7 components of ESCRT-III
PMID:22724069
controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0000815
ESCRT III complex
|
NAS
PMID:36107470 Comprehensive analysis of the human ESCRT-III-MIT domain int... |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: ESCRT III complex.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
PMID:18209100
ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
PMID:18209100
Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
|
|
GO:0001778
plasma membrane repair
|
IDA
PMID:24482116 ESCRT machinery is required for plasma membrane repair. |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: plasma membrane repair.
Reason: Plasma membrane repair is a valid ESCRT output context, but the core CHMP4A function remains ESCRT-III membrane remodeling in endosomal/MVB and related compartments.
Supporting Evidence:
PMID:24482116
ESCRT proteins were recruited within seconds to plasma membrane wounds
PMID:24482116
repair of certain wounds is ensured by ESCRT-mediated extracellular shedding of wounded portions
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0005643
nuclear pore
|
IDA
PMID:26040713 ESCRT-III controls nuclear envelope reformation. |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: nuclear pore.
Reason: Nuclear envelope or nuclear pore repair/reassembly is a supported ESCRT-III context but is secondary to CHMP4A core ESCRT-III membrane-remodeling function.
Supporting Evidence:
PMID:26040713
ESCRT-III controls nuclear envelope reformation
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0005765
lysosomal membrane
|
IDA
PMID:17984323 Functional multivesicular bodies are required for autophagic... |
ACCEPT |
Summary: Supported PN-relevant autophagy/endolysosomal CHMP4A context: lysosomal membrane.
Reason: CHMP4A/Snf7-1 depletion causes autophagosome accumulation in human neurons, and ESCRT/MVB function is required for autophagic degradation; this supports retaining autophagy and autophagosome-context annotations without claiming CHMP4A alone was directly assayed as the phagophore-sealing effector.
Supporting Evidence:
PMID:21975012
SiRNA knockdown of hSnf7-1 in human neurons leads to autophagosome accumulation
PMID:17984323
Functional multivesicular bodies are required for autophagic clearance
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0005828
kinetochore microtubule
|
IDA
PMID:26040712 Spastin and ESCRT-III coordinate mitotic spindle disassembly... |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: kinetochore microtubule.
Reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
Supporting Evidence:
PMID:22724069
Borealin interacts directly with the Snf7 components of ESCRT-III
PMID:22724069
controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0005886
plasma membrane
|
IDA
PMID:24878737 Structure of cellular ESCRT-III spirals and their relationsh... |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: plasma membrane.
Reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
Supporting Evidence:
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
|
|
GO:0006914
autophagy
|
IMP
PMID:17984323 Functional multivesicular bodies are required for autophagic... |
ACCEPT |
Summary: Supported PN-relevant autophagy/endolysosomal CHMP4A context: autophagy.
Reason: CHMP4A/Snf7-1 depletion causes autophagosome accumulation in human neurons, and ESCRT/MVB function is required for autophagic degradation; this supports retaining autophagy and autophagosome-context annotations without claiming CHMP4A alone was directly assayed as the phagophore-sealing effector.
Supporting Evidence:
PMID:21975012
SiRNA knockdown of hSnf7-1 in human neurons leads to autophagosome accumulation
PMID:17984323
Functional multivesicular bodies are required for autophagic clearance
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0006997
nucleus organization
|
IMP
PMID:20616062 Human ESCRT-III and VPS4 proteins are required for centrosom... |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: nucleus organization.
Reason: Nuclear envelope or nuclear pore repair/reassembly is a supported ESCRT-III context but is secondary to CHMP4A core ESCRT-III membrane-remodeling function.
Supporting Evidence:
PMID:26040713
ESCRT-III controls nuclear envelope reformation
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0007080
mitotic metaphase chromosome alignment
|
IMP
PMID:20616062 Human ESCRT-III and VPS4 proteins are required for centrosom... |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: mitotic metaphase chromosome alignment.
Reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
Supporting Evidence:
PMID:22724069
Borealin interacts directly with the Snf7 components of ESCRT-III
PMID:22724069
controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0030496
midbody
|
IDA
PMID:26040712 Spastin and ESCRT-III coordinate mitotic spindle disassembly... |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: midbody.
Reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
Supporting Evidence:
PMID:22724069
Borealin interacts directly with the Snf7 components of ESCRT-III
PMID:22724069
controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0031468
nuclear membrane reassembly
|
IMP
PMID:26040713 ESCRT-III controls nuclear envelope reformation. |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: nuclear membrane reassembly.
Reason: Nuclear envelope or nuclear pore repair/reassembly is a supported ESCRT-III context but is secondary to CHMP4A core ESCRT-III membrane-remodeling function.
Supporting Evidence:
PMID:26040713
ESCRT-III controls nuclear envelope reformation
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0032585
multivesicular body membrane
|
IDA
PMID:16554368 The ESCRT-III subunit hVps24 is required for degradation but... |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: multivesicular body membrane.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
PMID:18209100
ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
PMID:18209100
Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
|
|
GO:0036258
multivesicular body assembly
|
NAS
PMID:16505166 Recycling of ESCRTs by the AAA-ATPase Vps4 is regulated by a... |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: multivesicular body assembly.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
PMID:18209100
ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
PMID:18209100
Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
|
|
GO:0039702
viral budding via host ESCRT complex
|
IDA
PMID:24878737 Structure of cellular ESCRT-III spirals and their relationsh... |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: viral budding via host ESCRT complex.
Reason: Viral budding is directly supported as ESCRT hijacking but is not an endogenous core CHMP4A proteostasis function.
Supporting Evidence:
PMID:18511562
ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex
PMID:24878737
Structure of cellular ESCRT-III spirals and their relationship to HIV budding
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0043162
ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
|
IDA
PMID:17984323 Functional multivesicular bodies are required for autophagic... |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
PMID:18209100
ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
PMID:18209100
Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
|
|
GO:0046761
viral budding from plasma membrane
|
IDA
PMID:24878737 Structure of cellular ESCRT-III spirals and their relationsh... |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: viral budding from plasma membrane.
Reason: Viral budding is directly supported as ESCRT hijacking but is not an endogenous core CHMP4A proteostasis function.
Supporting Evidence:
PMID:18511562
ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex
PMID:24878737
Structure of cellular ESCRT-III spirals and their relationship to HIV budding
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0051469
vesicle fusion with vacuole
|
NAS
PMID:16505166 Recycling of ESCRTs by the AAA-ATPase Vps4 is regulated by a... |
MODIFY |
Summary: vesicle fusion with vacuole overstates a direct vesicle-fusion role for CHMP4A.
Reason: CHMP4A is an ESCRT-III membrane-remodeling subunit in MVB/endolysosomal trafficking; cached evidence supports late endosome/MVB to lysosome traffic more directly than CHMP4A as a fusion effector.
Proposed replacements:
late endosome to lysosome transport
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
|
|
GO:0061763
multivesicular body-lysosome fusion
|
NAS
PMID:16505166 Recycling of ESCRTs by the AAA-ATPase Vps4 is regulated by a... |
MODIFY |
Summary: multivesicular body-lysosome fusion overstates a direct vesicle-fusion role for CHMP4A.
Reason: CHMP4A is an ESCRT-III membrane-remodeling subunit in MVB/endolysosomal trafficking; cached evidence supports late endosome/MVB to lysosome traffic more directly than CHMP4A as a fusion effector.
Proposed replacements:
late endosome to lysosome transport
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
|
|
GO:0061952
midbody abscission
|
IMP
PMID:20616062 Human ESCRT-III and VPS4 proteins are required for centrosom... |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: midbody abscission.
Reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
Supporting Evidence:
PMID:22724069
Borealin interacts directly with the Snf7 components of ESCRT-III
PMID:22724069
controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0071985
multivesicular body sorting pathway
|
IDA
PMID:16554368 The ESCRT-III subunit hVps24 is required for degradation but... |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: multivesicular body sorting pathway.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
PMID:18209100
ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
PMID:18209100
Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
|
|
GO:0090148
membrane fission
|
NAS
PMID:19234443 Membrane scission by the ESCRT-III complex. |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: membrane fission.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
PMID:18209100
assemble into regular approximately 5-nm filaments that curve and self-associate
PMID:18209100
proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
|
|
GO:0097352
autophagosome maturation
|
IMP
PMID:17984323 Functional multivesicular bodies are required for autophagic... |
ACCEPT |
Summary: Supported PN-relevant autophagy/endolysosomal CHMP4A context: autophagosome maturation.
Reason: CHMP4A/Snf7-1 depletion causes autophagosome accumulation in human neurons, and ESCRT/MVB function is required for autophagic degradation; this supports retaining autophagy and autophagosome-context annotations without claiming CHMP4A alone was directly assayed as the phagophore-sealing effector.
Supporting Evidence:
PMID:21975012
SiRNA knockdown of hSnf7-1 in human neurons leads to autophagosome accumulation
PMID:17984323
Functional multivesicular bodies are required for autophagic clearance
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:1901673
regulation of mitotic spindle assembly
|
IMP
PMID:20616062 Human ESCRT-III and VPS4 proteins are required for centrosom... |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: regulation of mitotic spindle assembly.
Reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
Supporting Evidence:
PMID:22724069
Borealin interacts directly with the Snf7 components of ESCRT-III
PMID:22724069
controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:1902774
late endosome to lysosome transport
|
IMP
PMID:17984323 Functional multivesicular bodies are required for autophagic... |
ACCEPT |
Summary: Supported PN-relevant autophagy/endolysosomal CHMP4A context: late endosome to lysosome transport.
Reason: CHMP4A/Snf7-1 depletion causes autophagosome accumulation in human neurons, and ESCRT/MVB function is required for autophagic degradation; this supports retaining autophagy and autophagosome-context annotations without claiming CHMP4A alone was directly assayed as the phagophore-sealing effector.
Supporting Evidence:
PMID:21975012
SiRNA knockdown of hSnf7-1 in human neurons leads to autophagosome accumulation
PMID:17984323
Functional multivesicular bodies are required for autophagic clearance
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:1904930
amphisome membrane
|
IDA
PMID:17984323 Functional multivesicular bodies are required for autophagic... |
ACCEPT |
Summary: Supported PN-relevant autophagy/endolysosomal CHMP4A context: amphisome membrane.
Reason: CHMP4A/Snf7-1 depletion causes autophagosome accumulation in human neurons, and ESCRT/MVB function is required for autophagic degradation; this supports retaining autophagy and autophagosome-context annotations without claiming CHMP4A alone was directly assayed as the phagophore-sealing effector.
Supporting Evidence:
PMID:21975012
SiRNA knockdown of hSnf7-1 in human neurons leads to autophagosome accumulation
PMID:17984323
Functional multivesicular bodies are required for autophagic clearance
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0050877
nervous system process
|
IMP
PMID:21975012 ESCRT-III subunits Snf7-1 and Snf7-2 differentially regulate... |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: nervous system process.
Reason: The neuron paper supports CHMP4A-dependent neuronal survival and cargo turnover, but nervous system process is a broad phenotype rather than CHMP4A core molecular/cellular function.
Supporting Evidence:
PMID:21975012
hSnf7-1 and hSnf7-2 are required for the survival of human neurons
PMID:21975012
hSnf7-1 and hSnf7-2 may have preferred interacting partners to form distinct ESCRT-III with different cellular functions
|
|
GO:0071985
multivesicular body sorting pathway
|
IMP
PMID:21975012 ESCRT-III subunits Snf7-1 and Snf7-2 differentially regulate... |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: multivesicular body sorting pathway.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
PMID:18209100
ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
PMID:18209100
Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
|
|
GO:0000815
ESCRT III complex
|
IDA
PMID:18209100 Plasma membrane deformation by circular arrays of ESCRT-III ... |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: ESCRT III complex.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
PMID:18209100
ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
PMID:18209100
Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
|
|
GO:0042802
identical protein binding
|
IPI
PMID:18209100 Plasma membrane deformation by circular arrays of ESCRT-III ... |
MODIFY |
Summary: identical protein binding captures CHMP4A self-association but is less accurate than ESCRT-III polymerization and membrane bending.
Reason: CHMP4A forms curved ESCRT-III filaments/polymers that bend membranes; homodimer or identical-protein binding terms are weaker molecular descriptions.
Proposed replacements:
protein polymerization
membrane bending activity
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
|
|
GO:0051258
protein polymerization
|
IMP
PMID:18209100 Plasma membrane deformation by circular arrays of ESCRT-III ... |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: protein polymerization.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
PMID:18209100
assemble into regular approximately 5-nm filaments that curve and self-associate
PMID:18209100
proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
|
|
GO:0005515
protein binding
|
IPI
PMID:18641129 Differential requirements for Alix and ESCRT-III in cytokine... |
MARK AS OVER ANNOTATED |
Summary: Generic protein binding is not informative for CHMP4A: protein binding.
Reason: CHMP4A has real ESCRT, ALIX, Borealin, VPS4, and high-throughput interactions, but the curated function should describe ESCRT-III polymerization, membrane bending/fission, and specific ESCRT-complex contexts rather than plain protein binding.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
PMID:18511562
Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins (CHMP4A-C)
PMID:18209100
assemble into regular approximately 5-nm filaments that curve and self-associate
PMID:18209100
proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
|
|
GO:0016236
macroautophagy
|
TAS
PMID:20588296 Membrane budding and scission by the ESCRT machinery: it's a... |
ACCEPT |
Summary: Supported PN-relevant autophagy/endolysosomal CHMP4A context: macroautophagy.
Reason: CHMP4A/Snf7-1 depletion causes autophagosome accumulation in human neurons, and ESCRT/MVB function is required for autophagic degradation; this supports retaining autophagy and autophagosome-context annotations without claiming CHMP4A alone was directly assayed as the phagophore-sealing effector.
Supporting Evidence:
PMID:21975012
SiRNA knockdown of hSnf7-1 in human neurons leads to autophagosome accumulation
PMID:17984323
Functional multivesicular bodies are required for autophagic clearance
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0000815
ESCRT III complex
|
TAS
PMID:20588296 Membrane budding and scission by the ESCRT machinery: it's a... |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: ESCRT III complex.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
PMID:18209100
ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
PMID:18209100
Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
|
|
GO:0036258
multivesicular body assembly
|
TAS
PMID:20588296 Membrane budding and scission by the ESCRT machinery: it's a... |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: multivesicular body assembly.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
PMID:18209100
ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
PMID:18209100
Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
|
|
GO:0039702
viral budding via host ESCRT complex
|
TAS
PMID:20588296 Membrane budding and scission by the ESCRT machinery: it's a... |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: viral budding via host ESCRT complex.
Reason: Viral budding is directly supported as ESCRT hijacking but is not an endogenous core CHMP4A proteostasis function.
Supporting Evidence:
PMID:18511562
ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex
PMID:24878737
Structure of cellular ESCRT-III spirals and their relationship to HIV budding
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0000815
ESCRT III complex
|
IDA
PMID:24878737 Structure of cellular ESCRT-III spirals and their relationsh... |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: ESCRT III complex.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
PMID:18209100
ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
PMID:18209100
Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
|
|
GO:0005737
cytoplasm
|
IDA
PMID:24878737 Structure of cellular ESCRT-III spirals and their relationsh... |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: cytoplasm.
Reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
Supporting Evidence:
PMID:21975012
Both hSnf7-1 and hSnf7-2 were expressed in human postmitotic neurons and seemed to be present in both the nucleus and cytoplasm
|
|
GO:0005768
endosome
|
IDA
PMID:24878737 Structure of cellular ESCRT-III spirals and their relationsh... |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: endosome.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
PMID:18209100
ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
PMID:18209100
Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
|
|
GO:0005886
plasma membrane
|
IDA
PMID:24878737 Structure of cellular ESCRT-III spirals and their relationsh... |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: plasma membrane.
Reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
Supporting Evidence:
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
|
|
GO:0010324
membrane invagination
|
IMP
PMID:24878737 Structure of cellular ESCRT-III spirals and their relationsh... |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: membrane invagination.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
PMID:18209100
assemble into regular approximately 5-nm filaments that curve and self-associate
PMID:18209100
proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
|
|
GO:0030117
membrane coat
|
IMP
PMID:24878737 Structure of cellular ESCRT-III spirals and their relationsh... |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: membrane coat.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
PMID:18209100
assemble into regular approximately 5-nm filaments that curve and self-associate
PMID:18209100
proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
|
|
GO:0051258
protein polymerization
|
IMP
PMID:24878737 Structure of cellular ESCRT-III spirals and their relationsh... |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: protein polymerization.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
PMID:18209100
assemble into regular approximately 5-nm filaments that curve and self-associate
PMID:18209100
proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
|
|
GO:0039702
viral budding via host ESCRT complex
|
IGI
PMID:24107264 ESCRT requirements for EIAV budding. |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: viral budding via host ESCRT complex.
Reason: Viral budding is directly supported as ESCRT hijacking but is not an endogenous core CHMP4A proteostasis function.
Supporting Evidence:
PMID:18511562
ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex
PMID:24878737
Structure of cellular ESCRT-III spirals and their relationship to HIV budding
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0005515
protein binding
|
IPI
PMID:14519844 Divergent retroviral late-budding domains recruit vacuolar p... |
MARK AS OVER ANNOTATED |
Summary: Generic protein binding is not informative for CHMP4A: protein binding.
Reason: CHMP4A has real ESCRT, ALIX, Borealin, VPS4, and high-throughput interactions, but the curated function should describe ESCRT-III polymerization, membrane bending/fission, and specific ESCRT-complex contexts rather than plain protein binding.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
PMID:18511562
Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins (CHMP4A-C)
PMID:18209100
assemble into regular approximately 5-nm filaments that curve and self-associate
PMID:18209100
proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
|
|
GO:0042803
protein homodimerization activity
|
IPI
PMID:14519844 Divergent retroviral late-budding domains recruit vacuolar p... |
MODIFY |
Summary: protein homodimerization activity captures CHMP4A self-association but is less accurate than ESCRT-III polymerization and membrane bending.
Reason: CHMP4A forms curved ESCRT-III filaments/polymers that bend membranes; homodimer or identical-protein binding terms are weaker molecular descriptions.
Proposed replacements:
protein polymerization
membrane bending activity
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
|
|
GO:0005515
protein binding
|
IPI
PMID:14505570 The protein network of HIV budding. |
MARK AS OVER ANNOTATED |
Summary: Generic protein binding is not informative for CHMP4A: protein binding.
Reason: CHMP4A has real ESCRT, ALIX, Borealin, VPS4, and high-throughput interactions, but the curated function should describe ESCRT-III polymerization, membrane bending/fission, and specific ESCRT-complex contexts rather than plain protein binding.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
PMID:18511562
Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins (CHMP4A-C)
PMID:18209100
assemble into regular approximately 5-nm filaments that curve and self-associate
PMID:18209100
proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
|
|
GO:0000815
ESCRT III complex
|
IDA
PMID:21975012 ESCRT-III subunits Snf7-1 and Snf7-2 differentially regulate... |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: ESCRT III complex.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
PMID:18209100
ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
PMID:18209100
Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
|
|
GO:0005515
protein binding
|
IPI
PMID:21975012 ESCRT-III subunits Snf7-1 and Snf7-2 differentially regulate... |
MARK AS OVER ANNOTATED |
Summary: Generic protein binding is not informative for CHMP4A: protein binding.
Reason: CHMP4A has real ESCRT, ALIX, Borealin, VPS4, and high-throughput interactions, but the curated function should describe ESCRT-III polymerization, membrane bending/fission, and specific ESCRT-complex contexts rather than plain protein binding.
Supporting Evidence:
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
PMID:18511562
Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins (CHMP4A-C)
PMID:18209100
assemble into regular approximately 5-nm filaments that curve and self-associate
PMID:18209100
proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
|
|
GO:0005634
nucleus
|
IDA
PMID:21975012 ESCRT-III subunits Snf7-1 and Snf7-2 differentially regulate... |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: nucleus.
Reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
Supporting Evidence:
PMID:21975012
Both hSnf7-1 and hSnf7-2 were expressed in human postmitotic neurons and seemed to be present in both the nucleus and cytoplasm
|
|
GO:0005737
cytoplasm
|
IDA
PMID:21975012 ESCRT-III subunits Snf7-1 and Snf7-2 differentially regulate... |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: cytoplasm.
Reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
Supporting Evidence:
PMID:21975012
Both hSnf7-1 and hSnf7-2 were expressed in human postmitotic neurons and seemed to be present in both the nucleus and cytoplasm
|
|
GO:0006620
post-translational protein targeting to endoplasmic reticulum membrane
|
IMP
PMID:21975012 ESCRT-III subunits Snf7-1 and Snf7-2 differentially regulate... |
REMOVE |
Summary: The cited CHMP4A neuron paper does not support post-translational targeting to the ER membrane.
Reason: PMID:21975012 supports CHMP4A/Snf7-1 in neuron survival, ESCRT-III cargo turnover, and autophagosome accumulation; it does not provide evidence that CHMP4A mediates ER membrane targeting.
Supporting Evidence:
PMID:21975012
hSnf7-1 and hSnf7-2 are required for the survival of human neurons
PMID:21975012
hSnf7-1 and hSnf7-2 may have preferred interacting partners to form distinct ESCRT-III with different cellular functions
|
|
GO:0006900
vesicle budding from membrane
|
IMP
PMID:18209100 Plasma membrane deformation by circular arrays of ESCRT-III ... |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: vesicle budding from membrane.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
PMID:18209100
assemble into regular approximately 5-nm filaments that curve and self-associate
PMID:18209100
proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
|
|
GO:0006900
vesicle budding from membrane
|
IGI
PMID:18209100 Plasma membrane deformation by circular arrays of ESCRT-III ... |
ACCEPT |
Summary: Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: vesicle budding from membrane.
Reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
Supporting Evidence:
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
PMID:18209100
assemble into regular approximately 5-nm filaments that curve and self-associate
PMID:18209100
proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
|
|
GO:0009898
cytoplasmic side of plasma membrane
|
IDA
PMID:18209100 Plasma membrane deformation by circular arrays of ESCRT-III ... |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: cytoplasmic side of plasma membrane.
Reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
Supporting Evidence:
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
|
|
GO:0051117
ATPase binding
|
IPI
PMID:18209100 Plasma membrane deformation by circular arrays of ESCRT-III ... |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: ATPase binding.
Reason: ATPase binding reflects VPS4 engagement with CHMP4A filaments and is useful context, but CHMP4A itself is the ESCRT-III polymerizing membrane-remodeling subunit.
Supporting Evidence:
PMID:18209100
Binding to a coexpressed adenosine triphosphate hydrolysis-deficient mutant of VPS4B draws these filaments together
UniProt:Q9BY43
Interacts with VPS4A
|
|
GO:0097320
plasma membrane tubulation
|
IMP
PMID:18209100 Plasma membrane deformation by circular arrays of ESCRT-III ... |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: plasma membrane tubulation.
Reason: Plasma membrane tubulation is a useful overexpression/model phenotype for CHMP4A filament curvature, not the normal core biological process.
Supporting Evidence:
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
|
|
GO:0097320
plasma membrane tubulation
|
IGI
PMID:18209100 Plasma membrane deformation by circular arrays of ESCRT-III ... |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: plasma membrane tubulation.
Reason: Plasma membrane tubulation is a useful overexpression/model phenotype for CHMP4A filament curvature, not the normal core biological process.
Supporting Evidence:
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
UniProt:Q9BY43
Cytoplasmic vesicle membrane. Late endosome membrane
UniProt:Q9BY43
Membrane-associated
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-3159232 |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: cytosol.
Reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
Supporting Evidence:
PMID:21975012
Both hSnf7-1 and hSnf7-2 were expressed in human postmitotic neurons and seemed to be present in both the nucleus and cytoplasm
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-917693 |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: cytosol.
Reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
Supporting Evidence:
PMID:21975012
Both hSnf7-1 and hSnf7-2 were expressed in human postmitotic neurons and seemed to be present in both the nucleus and cytoplasm
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-917700 |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: cytosol.
Reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
Supporting Evidence:
PMID:21975012
Both hSnf7-1 and hSnf7-2 were expressed in human postmitotic neurons and seemed to be present in both the nucleus and cytoplasm
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-9668389 |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: cytosol.
Reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
Supporting Evidence:
PMID:21975012
Both hSnf7-1 and hSnf7-2 were expressed in human postmitotic neurons and seemed to be present in both the nucleus and cytoplasm
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-9668395 |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: cytosol.
Reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
Supporting Evidence:
PMID:21975012
Both hSnf7-1 and hSnf7-2 were expressed in human postmitotic neurons and seemed to be present in both the nucleus and cytoplasm
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-9668398 |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: cytosol.
Reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
Supporting Evidence:
PMID:21975012
Both hSnf7-1 and hSnf7-2 were expressed in human postmitotic neurons and seemed to be present in both the nucleus and cytoplasm
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-9668405 |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: cytosol.
Reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
Supporting Evidence:
PMID:21975012
Both hSnf7-1 and hSnf7-2 were expressed in human postmitotic neurons and seemed to be present in both the nucleus and cytoplasm
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-9668415 |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: cytosol.
Reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
Supporting Evidence:
PMID:21975012
Both hSnf7-1 and hSnf7-2 were expressed in human postmitotic neurons and seemed to be present in both the nucleus and cytoplasm
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-9668419 |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: cytosol.
Reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
Supporting Evidence:
PMID:21975012
Both hSnf7-1 and hSnf7-2 were expressed in human postmitotic neurons and seemed to be present in both the nucleus and cytoplasm
|
|
GO:0030496
midbody
|
IDA
PMID:22724069 The chromosomal passenger complex controls the function of e... |
KEEP AS NON CORE |
Summary: True or plausible non-core CHMP4A ESCRT context: midbody.
Reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
Supporting Evidence:
PMID:22724069
Borealin interacts directly with the Snf7 components of ESCRT-III
PMID:22724069
controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
UniProt:Q9BY43
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
UniProt:Q9BY43
involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
|
|
GO:0180020
membrane bending activity
|
IDA
PMID:18209100 Plasma membrane deformation by circular arrays of ESCRT-III ... |
NEW |
Summary: New CHMP4A molecular-function annotation supported by direct ESCRT-III filament/membrane curvature evidence.
Reason: PMID:18209100 directly shows CHMP4A/hSnf7-1-containing ESCRT-III filaments promote or stabilize negative membrane curvature and outward budding, making membrane bending activity more informative than generic protein binding.
Supporting Evidence:
UniProt:Q9BY43
believed to mediate the necessary vesicle extrusion and/or membrane fission activities
PMID:18209100
form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
PMID:19234443
ESCRT-III has the instrinsic ability to drive the scission of membrane necks
PMID:18209100
assemble into regular approximately 5-nm filaments that curve and self-associate
PMID:18209100
proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
|
Q: Which CHMP4 paralog, CHMP4A, CHMP4B, or CHMP4C, is the dominant Snf7-family subunit during human phagophore closure and autophagosome maturation?
Q: Should GO annotations distinguish direct CHMP4A membrane-bending/polymer function from broader ESCRT output processes such as viral budding, plasma membrane repair, and nuclear envelope sealing?
Q: Does CHMP4A preferentially pair with CHMP2A in autophagy and endosomal cargo sorting, as suggested by human-neuron cargo turnover assays?
Experiment: Use endogenous CHMP4A tagging and acute CHMP4A depletion/rescue during starvation-induced autophagy to image recruitment to phagophores, autophagosomes, and amphisomes.
Hypothesis: If CHMP4A directly participates in autophagosome maturation or closure, it should be transiently recruited to autophagy membranes and rescue should require its polymerization/membrane-binding region.
Experiment: Compare wild-type CHMP4A with ALIX-binding and C-terminal autoinhibition mutants in MVB cargo sorting, ESCRT spiral formation, plasma membrane repair, and viral budding assays.
Hypothesis: CHMP4A polymerization and partner recruitment requirements differ across endogenous ESCRT outputs and virus-hijacked budding.
Experiment: Biochemically reconstitute CHMP4A-containing human ESCRT-III polymers with CHMP2A/CHMP3/VPS4 and test membrane bending/scission on defined liposomes.
Hypothesis: CHMP4A contributes Snf7-family filament curvature that can drive membrane bending and support reverse-topology scission in a minimal human ESCRT-III module.
just fetch-gene human CHMP4A created the review stub, UniProt record, GOA table, cached publications, Reactome entries, and PANTHER family data. GOA seeded 103 annotations covering ESCRT-III complex membership, MVB/endosomal sorting, membrane budding/fission/polymerization, autophagy, plasma membrane repair, viral budding, cytokinesis/midbody, nuclear envelope/nuclear pore contexts, broad locations, and generic binding rows.just deep-research-falcon human CHMP4A timed out after 600 seconds on 2026-06-02 and did not produce a Falcon report.post-translational protein targeting to endoplasmic reticulum membrane row, which should be removed.GO:0005515 protein binding rows should be marked over-annotated. CHMP4A has real interactions with PDCD6IP/ALIX, CHMP2A, CHMP3, CHMP4 paralogs, CHMP6, VPS4, Borealin, and high-throughput interactors, but the informative curation is ESCRT-III polymerization/membrane fission and specific complex contexts, not plain protein binding.The core CHMP4A role is non-enzymatic ESCRT-III structural subunit activity: CHMP4A/Snf7 polymerizes on endosomal/MVB and related membranes, forms curved membrane-associated filaments/rings, and supports reverse-topology membrane remodeling, budding, and fission. Core annotations should include ESCRT III complex, MVB sorting/assembly, late endosome/MVB/endosomal membrane locations, protein polymerization, vesicle budding from membrane, membrane fission, and ubiquitin-dependent cargo degradation through the MVB pathway.
Autophagy/autophagosome annotations are PN-relevant and supported by CHMP4A knockdown in human neurons plus broader ESCRT/MVB autophagy evidence, but the review should avoid claiming that CHMP4A alone has been directly assayed as the phagophore-sealing effector in the cached literature. Cytokinesis, nuclear envelope sealing, plasma membrane repair, viral budding, and neuronal survival/cargo-turnover rows should be kept as non-core ESCRT output contexts where directly supported. Generic protein-binding rows and the unsupported ER-targeting process should not be retained as informative CHMP4A functions.
*-deep-research*.md file found in this gene directory.Autophagosome closure maturation and lysosome fusion → Sealing of autophagophore membrane → ESCRT-III complex component; (2) Microautophagy → General microautophagy machinery → ESCRT-III complex component. PN-node mapping: ESCRT-III leaves=mapped→GO:0000815 (already_in_goa_exact); sealing group=mapped→GO:0000045 autophagosome assembly (more_specific_than_existing_goa); ancestors context_only (GO:0016236, GO:0016237). Projected: GO:0000815 (x2), GO:0000045.GO:0000045 autophagosome assembly (action: NEW or note in suggested_questions) to align with the PN "Sealing of autophagophore membrane → autophagosome assembly" projection, OR explicitly note GO:0097352 already covers the closure/maturation step. Low priority — the maturation term already captures the biology; flag for curator.This file is generated from the current PROTEOSTASIS phase-1 dossier and local gene-review artifacts. Edit the source review, PN mapping, or dossier rather than this generated note when correcting the underlying curation.
id: Q9BY43
gene_symbol: CHMP4A
product_type: PROTEIN
status: COMPLETE
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: CHMP4A encodes a Snf7-family core subunit of ESCRT-III. Its best-supported function is non-enzymatic ESCRT-III polymerization on endosomal/MVB and related membranes, where CHMP4A-containing filaments bend membranes and support reverse-topology budding/fission for intraluminal vesicle formation, MVB cargo sorting, and downstream endolysosomal degradation. CHMP4A also participates in autophagy/autophagosome contexts, plasma membrane repair, cytokinetic abscission, nuclear envelope repair, and viral budding as topologically related ESCRT output contexts, but those should not obscure the core ESCRT-III membrane-remodeling role.
alternative_products:
- name: '1'
id: Q9BY43-1
- name: '2'
id: Q9BY43-2
sequence_note: VSP_056264
existing_annotations:
- term:
id: GO:0005635
label: nuclear envelope
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: nuclear envelope.'
action: KEEP_AS_NON_CORE
reason: Nuclear envelope or nuclear pore repair/reassembly is a supported ESCRT-III context but is secondary to CHMP4A core ESCRT-III membrane-remodeling function.
supported_by:
- reference_id: PMID:26040713
supporting_text: ESCRT-III controls nuclear envelope reformation
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0031468
label: nuclear membrane reassembly
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: nuclear membrane reassembly.'
action: KEEP_AS_NON_CORE
reason: Nuclear envelope or nuclear pore repair/reassembly is a supported ESCRT-III context but is secondary to CHMP4A core ESCRT-III membrane-remodeling function.
supported_by:
- reference_id: PMID:26040713
supporting_text: ESCRT-III controls nuclear envelope reformation
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0000815
label: ESCRT III complex
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: part_of
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: ESCRT III complex.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: PMID:18209100
supporting_text: ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
- reference_id: PMID:18209100
supporting_text: Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- term:
id: GO:0009898
label: cytoplasmic side of plasma membrane
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: cytoplasmic side of plasma membrane.'
action: KEEP_AS_NON_CORE
reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- term:
id: GO:0032511
label: late endosome to vacuole transport via multivesicular body sorting pathway
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: late endosome to vacuole transport via multivesicular body sorting pathway.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: PMID:18209100
supporting_text: ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
- reference_id: PMID:18209100
supporting_text: Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- term:
id: GO:0000776
label: kinetochore
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: located_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: kinetochore.'
action: KEEP_AS_NON_CORE
reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
supported_by:
- reference_id: PMID:22724069
supporting_text: Borealin interacts directly with the Snf7 components of ESCRT-III
- reference_id: PMID:22724069
supporting_text: controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0001778
label: plasma membrane repair
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: plasma membrane repair.'
action: KEEP_AS_NON_CORE
reason: Plasma membrane repair is a valid ESCRT output context, but the core CHMP4A function remains ESCRT-III membrane remodeling in endosomal/MVB and related compartments.
supported_by:
- reference_id: PMID:24482116
supporting_text: ESCRT proteins were recruited within seconds to plasma membrane wounds
- reference_id: PMID:24482116
supporting_text: repair of certain wounds is ensured by ESCRT-mediated extracellular shedding of wounded portions
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0005643
label: nuclear pore
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: part_of
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: nuclear pore.'
action: KEEP_AS_NON_CORE
reason: Nuclear envelope or nuclear pore repair/reassembly is a supported ESCRT-III context but is secondary to CHMP4A core ESCRT-III membrane-remodeling function.
supported_by:
- reference_id: PMID:26040713
supporting_text: ESCRT-III controls nuclear envelope reformation
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0005765
label: lysosomal membrane
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: located_in
review:
summary: 'Supported PN-relevant autophagy/endolysosomal CHMP4A context: lysosomal membrane.'
action: ACCEPT
reason: CHMP4A/Snf7-1 depletion causes autophagosome accumulation in human neurons, and ESCRT/MVB function is required for autophagic degradation; this supports retaining autophagy and autophagosome-context annotations without claiming CHMP4A alone was directly assayed as the phagophore-sealing effector.
supported_by:
- reference_id: PMID:21975012
supporting_text: SiRNA knockdown of hSnf7-1 in human neurons leads to autophagosome accumulation
- reference_id: PMID:17984323
supporting_text: Functional multivesicular bodies are required for autophagic clearance
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0005828
label: kinetochore microtubule
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: located_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: kinetochore microtubule.'
action: KEEP_AS_NON_CORE
reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
supported_by:
- reference_id: PMID:22724069
supporting_text: Borealin interacts directly with the Snf7 components of ESCRT-III
- reference_id: PMID:22724069
supporting_text: controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0007034
label: vacuolar transport
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: involved_in
review:
summary: The broad vacuolar transport label is less precise than CHMP4A MVB/endosomal sorting function.
action: MODIFY
reason: CHMP4A is best represented by ESCRT-III-mediated MVB sorting and ILV/membrane fission, not generic vacuolar transport.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
proposed_replacement_terms:
- id: GO:0071985
label: multivesicular body sorting pathway
- term:
id: GO:0007080
label: mitotic metaphase chromosome alignment
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: mitotic metaphase chromosome alignment.'
action: KEEP_AS_NON_CORE
reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
supported_by:
- reference_id: PMID:22724069
supporting_text: Borealin interacts directly with the Snf7 components of ESCRT-III
- reference_id: PMID:22724069
supporting_text: controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0030496
label: midbody
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: located_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: midbody.'
action: KEEP_AS_NON_CORE
reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
supported_by:
- reference_id: PMID:22724069
supporting_text: Borealin interacts directly with the Snf7 components of ESCRT-III
- reference_id: PMID:22724069
supporting_text: controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0030659
label: cytoplasmic vesicle membrane
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: cytoplasmic vesicle membrane.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- reference_id: PMID:18209100
supporting_text: ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
- reference_id: PMID:18209100
supporting_text: Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
- term:
id: GO:0031468
label: nuclear membrane reassembly
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: nuclear membrane reassembly.'
action: KEEP_AS_NON_CORE
reason: Nuclear envelope or nuclear pore repair/reassembly is a supported ESCRT-III context but is secondary to CHMP4A core ESCRT-III membrane-remodeling function.
supported_by:
- reference_id: PMID:26040713
supporting_text: ESCRT-III controls nuclear envelope reformation
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0031902
label: late endosome membrane
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: late endosome membrane.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- reference_id: PMID:18209100
supporting_text: ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
- reference_id: PMID:18209100
supporting_text: Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
- term:
id: GO:0032585
label: multivesicular body membrane
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: located_in
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: multivesicular body membrane.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- reference_id: PMID:18209100
supporting_text: ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
- reference_id: PMID:18209100
supporting_text: Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
- term:
id: GO:0036258
label: multivesicular body assembly
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: multivesicular body assembly.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: PMID:18209100
supporting_text: ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
- reference_id: PMID:18209100
supporting_text: Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- term:
id: GO:0039702
label: viral budding via host ESCRT complex
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: viral budding via host ESCRT complex.'
action: KEEP_AS_NON_CORE
reason: Viral budding is directly supported as ESCRT hijacking but is not an endogenous core CHMP4A proteostasis function.
supported_by:
- reference_id: PMID:18511562
supporting_text: ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex
- reference_id: PMID:24878737
supporting_text: Structure of cellular ESCRT-III spirals and their relationship to HIV budding
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0042803
label: protein homodimerization activity
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: enables
review:
summary: protein homodimerization activity captures CHMP4A self-association but is less accurate than ESCRT-III polymerization and membrane bending.
action: MODIFY
reason: CHMP4A forms curved ESCRT-III filaments/polymers that bend membranes; homodimer or identical-protein binding terms are weaker molecular descriptions.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
proposed_replacement_terms:
- id: GO:0051258
label: protein polymerization
- id: GO:0180020
label: membrane bending activity
- term:
id: GO:0043162
label: ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: PMID:18209100
supporting_text: ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
- reference_id: PMID:18209100
supporting_text: Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- term:
id: GO:0046761
label: viral budding from plasma membrane
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: viral budding from plasma membrane.'
action: KEEP_AS_NON_CORE
reason: Viral budding is directly supported as ESCRT hijacking but is not an endogenous core CHMP4A proteostasis function.
supported_by:
- reference_id: PMID:18511562
supporting_text: ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex
- reference_id: PMID:24878737
supporting_text: Structure of cellular ESCRT-III spirals and their relationship to HIV budding
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0061952
label: midbody abscission
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: midbody abscission.'
action: KEEP_AS_NON_CORE
reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
supported_by:
- reference_id: PMID:22724069
supporting_text: Borealin interacts directly with the Snf7 components of ESCRT-III
- reference_id: PMID:22724069
supporting_text: controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0071985
label: multivesicular body sorting pathway
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: multivesicular body sorting pathway.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: PMID:18209100
supporting_text: ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
- reference_id: PMID:18209100
supporting_text: Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- term:
id: GO:0097352
label: autophagosome maturation
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: 'Supported PN-relevant autophagy/endolysosomal CHMP4A context: autophagosome maturation.'
action: ACCEPT
reason: CHMP4A/Snf7-1 depletion causes autophagosome accumulation in human neurons, and ESCRT/MVB function is required for autophagic degradation; this supports retaining autophagy and autophagosome-context annotations without claiming CHMP4A alone was directly assayed as the phagophore-sealing effector.
supported_by:
- reference_id: PMID:21975012
supporting_text: SiRNA knockdown of hSnf7-1 in human neurons leads to autophagosome accumulation
- reference_id: PMID:17984323
supporting_text: Functional multivesicular bodies are required for autophagic clearance
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:1901673
label: regulation of mitotic spindle assembly
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: regulation of mitotic spindle assembly.'
action: KEEP_AS_NON_CORE
reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
supported_by:
- reference_id: PMID:22724069
supporting_text: Borealin interacts directly with the Snf7 components of ESCRT-III
- reference_id: PMID:22724069
supporting_text: controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:1902774
label: late endosome to lysosome transport
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: 'Supported PN-relevant autophagy/endolysosomal CHMP4A context: late endosome to lysosome transport.'
action: ACCEPT
reason: CHMP4A/Snf7-1 depletion causes autophagosome accumulation in human neurons, and ESCRT/MVB function is required for autophagic degradation; this supports retaining autophagy and autophagosome-context annotations without claiming CHMP4A alone was directly assayed as the phagophore-sealing effector.
supported_by:
- reference_id: PMID:21975012
supporting_text: SiRNA knockdown of hSnf7-1 in human neurons leads to autophagosome accumulation
- reference_id: PMID:17984323
supporting_text: Functional multivesicular bodies are required for autophagic clearance
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:1904930
label: amphisome membrane
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: located_in
review:
summary: 'Supported PN-relevant autophagy/endolysosomal CHMP4A context: amphisome membrane.'
action: ACCEPT
reason: CHMP4A/Snf7-1 depletion causes autophagosome accumulation in human neurons, and ESCRT/MVB function is required for autophagic degradation; this supports retaining autophagy and autophagosome-context annotations without claiming CHMP4A alone was directly assayed as the phagophore-sealing effector.
supported_by:
- reference_id: PMID:21975012
supporting_text: SiRNA knockdown of hSnf7-1 in human neurons leads to autophagosome accumulation
- reference_id: PMID:17984323
supporting_text: Functional multivesicular bodies are required for autophagic clearance
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16189514
qualifier: enables
review:
summary: 'Generic protein binding is not informative for CHMP4A: protein binding.'
action: MARK_AS_OVER_ANNOTATED
reason: CHMP4A has real ESCRT, ALIX, Borealin, VPS4, and high-throughput interactions, but the curated function should describe ESCRT-III polymerization, membrane bending/fission, and specific ESCRT-complex contexts rather than plain protein binding.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: PMID:18511562
supporting_text: Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins (CHMP4A-C)
- reference_id: PMID:18209100
supporting_text: assemble into regular approximately 5-nm filaments that curve and self-associate
- reference_id: PMID:18209100
supporting_text: proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16730941
qualifier: enables
review:
summary: 'Generic protein binding is not informative for CHMP4A: protein binding.'
action: MARK_AS_OVER_ANNOTATED
reason: CHMP4A has real ESCRT, ALIX, Borealin, VPS4, and high-throughput interactions, but the curated function should describe ESCRT-III polymerization, membrane bending/fission, and specific ESCRT-complex contexts rather than plain protein binding.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: PMID:18511562
supporting_text: Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins (CHMP4A-C)
- reference_id: PMID:18209100
supporting_text: assemble into regular approximately 5-nm filaments that curve and self-associate
- reference_id: PMID:18209100
supporting_text: proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:17350572
qualifier: enables
review:
summary: 'Generic protein binding is not informative for CHMP4A: protein binding.'
action: MARK_AS_OVER_ANNOTATED
reason: CHMP4A has real ESCRT, ALIX, Borealin, VPS4, and high-throughput interactions, but the curated function should describe ESCRT-III polymerization, membrane bending/fission, and specific ESCRT-complex contexts rather than plain protein binding.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: PMID:18511562
supporting_text: Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins (CHMP4A-C)
- reference_id: PMID:18209100
supporting_text: assemble into regular approximately 5-nm filaments that curve and self-associate
- reference_id: PMID:18209100
supporting_text: proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:18511562
qualifier: enables
review:
summary: 'Generic protein binding is not informative for CHMP4A: protein binding.'
action: MARK_AS_OVER_ANNOTATED
reason: CHMP4A has real ESCRT, ALIX, Borealin, VPS4, and high-throughput interactions, but the curated function should describe ESCRT-III polymerization, membrane bending/fission, and specific ESCRT-complex contexts rather than plain protein binding.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: PMID:18511562
supporting_text: Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins (CHMP4A-C)
- reference_id: PMID:18209100
supporting_text: assemble into regular approximately 5-nm filaments that curve and self-associate
- reference_id: PMID:18209100
supporting_text: proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:25416956
qualifier: enables
review:
summary: 'Generic protein binding is not informative for CHMP4A: protein binding.'
action: MARK_AS_OVER_ANNOTATED
reason: CHMP4A has real ESCRT, ALIX, Borealin, VPS4, and high-throughput interactions, but the curated function should describe ESCRT-III polymerization, membrane bending/fission, and specific ESCRT-complex contexts rather than plain protein binding.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: PMID:18511562
supporting_text: Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins (CHMP4A-C)
- reference_id: PMID:18209100
supporting_text: assemble into regular approximately 5-nm filaments that curve and self-associate
- reference_id: PMID:18209100
supporting_text: proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:31515488
qualifier: enables
review:
summary: 'Generic protein binding is not informative for CHMP4A: protein binding.'
action: MARK_AS_OVER_ANNOTATED
reason: CHMP4A has real ESCRT, ALIX, Borealin, VPS4, and high-throughput interactions, but the curated function should describe ESCRT-III polymerization, membrane bending/fission, and specific ESCRT-complex contexts rather than plain protein binding.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: PMID:18511562
supporting_text: Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins (CHMP4A-C)
- reference_id: PMID:18209100
supporting_text: assemble into regular approximately 5-nm filaments that curve and self-associate
- reference_id: PMID:18209100
supporting_text: proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
- term:
id: GO:0000421
label: autophagosome membrane
evidence_type: IDA
original_reference_id: PMID:17984323
qualifier: located_in
review:
summary: 'Supported PN-relevant autophagy/endolysosomal CHMP4A context: autophagosome membrane.'
action: ACCEPT
reason: CHMP4A/Snf7-1 depletion causes autophagosome accumulation in human neurons, and ESCRT/MVB function is required for autophagic degradation; this supports retaining autophagy and autophagosome-context annotations without claiming CHMP4A alone was directly assayed as the phagophore-sealing effector.
supported_by:
- reference_id: PMID:21975012
supporting_text: SiRNA knockdown of hSnf7-1 in human neurons leads to autophagosome accumulation
- reference_id: PMID:17984323
supporting_text: Functional multivesicular bodies are required for autophagic clearance
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0000776
label: kinetochore
evidence_type: IDA
original_reference_id: PMID:26040712
qualifier: located_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: kinetochore.'
action: KEEP_AS_NON_CORE
reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
supported_by:
- reference_id: PMID:22724069
supporting_text: Borealin interacts directly with the Snf7 components of ESCRT-III
- reference_id: PMID:22724069
supporting_text: controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0000815
label: ESCRT III complex
evidence_type: NAS
original_reference_id: PMID:36107470
qualifier: part_of
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: ESCRT III complex.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: PMID:18209100
supporting_text: ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
- reference_id: PMID:18209100
supporting_text: Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- term:
id: GO:0001778
label: plasma membrane repair
evidence_type: IDA
original_reference_id: PMID:24482116
qualifier: involved_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: plasma membrane repair.'
action: KEEP_AS_NON_CORE
reason: Plasma membrane repair is a valid ESCRT output context, but the core CHMP4A function remains ESCRT-III membrane remodeling in endosomal/MVB and related compartments.
supported_by:
- reference_id: PMID:24482116
supporting_text: ESCRT proteins were recruited within seconds to plasma membrane wounds
- reference_id: PMID:24482116
supporting_text: repair of certain wounds is ensured by ESCRT-mediated extracellular shedding of wounded portions
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0005643
label: nuclear pore
evidence_type: IDA
original_reference_id: PMID:26040713
qualifier: part_of
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: nuclear pore.'
action: KEEP_AS_NON_CORE
reason: Nuclear envelope or nuclear pore repair/reassembly is a supported ESCRT-III context but is secondary to CHMP4A core ESCRT-III membrane-remodeling function.
supported_by:
- reference_id: PMID:26040713
supporting_text: ESCRT-III controls nuclear envelope reformation
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0005765
label: lysosomal membrane
evidence_type: IDA
original_reference_id: PMID:17984323
qualifier: located_in
review:
summary: 'Supported PN-relevant autophagy/endolysosomal CHMP4A context: lysosomal membrane.'
action: ACCEPT
reason: CHMP4A/Snf7-1 depletion causes autophagosome accumulation in human neurons, and ESCRT/MVB function is required for autophagic degradation; this supports retaining autophagy and autophagosome-context annotations without claiming CHMP4A alone was directly assayed as the phagophore-sealing effector.
supported_by:
- reference_id: PMID:21975012
supporting_text: SiRNA knockdown of hSnf7-1 in human neurons leads to autophagosome accumulation
- reference_id: PMID:17984323
supporting_text: Functional multivesicular bodies are required for autophagic clearance
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0005828
label: kinetochore microtubule
evidence_type: IDA
original_reference_id: PMID:26040712
qualifier: located_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: kinetochore microtubule.'
action: KEEP_AS_NON_CORE
reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
supported_by:
- reference_id: PMID:22724069
supporting_text: Borealin interacts directly with the Snf7 components of ESCRT-III
- reference_id: PMID:22724069
supporting_text: controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0005886
label: plasma membrane
evidence_type: IDA
original_reference_id: PMID:24878737
qualifier: located_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: plasma membrane.'
action: KEEP_AS_NON_CORE
reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- term:
id: GO:0006914
label: autophagy
evidence_type: IMP
original_reference_id: PMID:17984323
qualifier: involved_in
review:
summary: 'Supported PN-relevant autophagy/endolysosomal CHMP4A context: autophagy.'
action: ACCEPT
reason: CHMP4A/Snf7-1 depletion causes autophagosome accumulation in human neurons, and ESCRT/MVB function is required for autophagic degradation; this supports retaining autophagy and autophagosome-context annotations without claiming CHMP4A alone was directly assayed as the phagophore-sealing effector.
supported_by:
- reference_id: PMID:21975012
supporting_text: SiRNA knockdown of hSnf7-1 in human neurons leads to autophagosome accumulation
- reference_id: PMID:17984323
supporting_text: Functional multivesicular bodies are required for autophagic clearance
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0006997
label: nucleus organization
evidence_type: IMP
original_reference_id: PMID:20616062
qualifier: involved_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: nucleus organization.'
action: KEEP_AS_NON_CORE
reason: Nuclear envelope or nuclear pore repair/reassembly is a supported ESCRT-III context but is secondary to CHMP4A core ESCRT-III membrane-remodeling function.
supported_by:
- reference_id: PMID:26040713
supporting_text: ESCRT-III controls nuclear envelope reformation
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0007080
label: mitotic metaphase chromosome alignment
evidence_type: IMP
original_reference_id: PMID:20616062
qualifier: involved_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: mitotic metaphase chromosome alignment.'
action: KEEP_AS_NON_CORE
reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
supported_by:
- reference_id: PMID:22724069
supporting_text: Borealin interacts directly with the Snf7 components of ESCRT-III
- reference_id: PMID:22724069
supporting_text: controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0030496
label: midbody
evidence_type: IDA
original_reference_id: PMID:26040712
qualifier: located_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: midbody.'
action: KEEP_AS_NON_CORE
reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
supported_by:
- reference_id: PMID:22724069
supporting_text: Borealin interacts directly with the Snf7 components of ESCRT-III
- reference_id: PMID:22724069
supporting_text: controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0031468
label: nuclear membrane reassembly
evidence_type: IMP
original_reference_id: PMID:26040713
qualifier: involved_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: nuclear membrane reassembly.'
action: KEEP_AS_NON_CORE
reason: Nuclear envelope or nuclear pore repair/reassembly is a supported ESCRT-III context but is secondary to CHMP4A core ESCRT-III membrane-remodeling function.
supported_by:
- reference_id: PMID:26040713
supporting_text: ESCRT-III controls nuclear envelope reformation
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0032585
label: multivesicular body membrane
evidence_type: IDA
original_reference_id: PMID:16554368
qualifier: located_in
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: multivesicular body membrane.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- reference_id: PMID:18209100
supporting_text: ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
- reference_id: PMID:18209100
supporting_text: Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
- term:
id: GO:0036258
label: multivesicular body assembly
evidence_type: NAS
original_reference_id: PMID:16505166
qualifier: involved_in
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: multivesicular body assembly.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: PMID:18209100
supporting_text: ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
- reference_id: PMID:18209100
supporting_text: Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- term:
id: GO:0039702
label: viral budding via host ESCRT complex
evidence_type: IDA
original_reference_id: PMID:24878737
qualifier: involved_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: viral budding via host ESCRT complex.'
action: KEEP_AS_NON_CORE
reason: Viral budding is directly supported as ESCRT hijacking but is not an endogenous core CHMP4A proteostasis function.
supported_by:
- reference_id: PMID:18511562
supporting_text: ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex
- reference_id: PMID:24878737
supporting_text: Structure of cellular ESCRT-III spirals and their relationship to HIV budding
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0043162
label: ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
evidence_type: IDA
original_reference_id: PMID:17984323
qualifier: involved_in
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: PMID:18209100
supporting_text: ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
- reference_id: PMID:18209100
supporting_text: Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- term:
id: GO:0046761
label: viral budding from plasma membrane
evidence_type: IDA
original_reference_id: PMID:24878737
qualifier: involved_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: viral budding from plasma membrane.'
action: KEEP_AS_NON_CORE
reason: Viral budding is directly supported as ESCRT hijacking but is not an endogenous core CHMP4A proteostasis function.
supported_by:
- reference_id: PMID:18511562
supporting_text: ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex
- reference_id: PMID:24878737
supporting_text: Structure of cellular ESCRT-III spirals and their relationship to HIV budding
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0051469
label: vesicle fusion with vacuole
evidence_type: NAS
original_reference_id: PMID:16505166
qualifier: involved_in
review:
summary: vesicle fusion with vacuole overstates a direct vesicle-fusion role for CHMP4A.
action: MODIFY
reason: CHMP4A is an ESCRT-III membrane-remodeling subunit in MVB/endolysosomal trafficking; cached evidence supports late endosome/MVB to lysosome traffic more directly than CHMP4A as a fusion effector.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
proposed_replacement_terms:
- id: GO:1902774
label: late endosome to lysosome transport
- term:
id: GO:0061763
label: multivesicular body-lysosome fusion
evidence_type: NAS
original_reference_id: PMID:16505166
qualifier: involved_in
review:
summary: multivesicular body-lysosome fusion overstates a direct vesicle-fusion role for CHMP4A.
action: MODIFY
reason: CHMP4A is an ESCRT-III membrane-remodeling subunit in MVB/endolysosomal trafficking; cached evidence supports late endosome/MVB to lysosome traffic more directly than CHMP4A as a fusion effector.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
proposed_replacement_terms:
- id: GO:1902774
label: late endosome to lysosome transport
- term:
id: GO:0061952
label: midbody abscission
evidence_type: IMP
original_reference_id: PMID:20616062
qualifier: involved_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: midbody abscission.'
action: KEEP_AS_NON_CORE
reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
supported_by:
- reference_id: PMID:22724069
supporting_text: Borealin interacts directly with the Snf7 components of ESCRT-III
- reference_id: PMID:22724069
supporting_text: controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0071985
label: multivesicular body sorting pathway
evidence_type: IDA
original_reference_id: PMID:16554368
qualifier: involved_in
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: multivesicular body sorting pathway.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: PMID:18209100
supporting_text: ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
- reference_id: PMID:18209100
supporting_text: Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- term:
id: GO:0090148
label: membrane fission
evidence_type: NAS
original_reference_id: PMID:19234443
qualifier: involved_in
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: membrane fission.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: PMID:18209100
supporting_text: assemble into regular approximately 5-nm filaments that curve and self-associate
- reference_id: PMID:18209100
supporting_text: proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
- term:
id: GO:0097352
label: autophagosome maturation
evidence_type: IMP
original_reference_id: PMID:17984323
qualifier: involved_in
review:
summary: 'Supported PN-relevant autophagy/endolysosomal CHMP4A context: autophagosome maturation.'
action: ACCEPT
reason: CHMP4A/Snf7-1 depletion causes autophagosome accumulation in human neurons, and ESCRT/MVB function is required for autophagic degradation; this supports retaining autophagy and autophagosome-context annotations without claiming CHMP4A alone was directly assayed as the phagophore-sealing effector.
supported_by:
- reference_id: PMID:21975012
supporting_text: SiRNA knockdown of hSnf7-1 in human neurons leads to autophagosome accumulation
- reference_id: PMID:17984323
supporting_text: Functional multivesicular bodies are required for autophagic clearance
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:1901673
label: regulation of mitotic spindle assembly
evidence_type: IMP
original_reference_id: PMID:20616062
qualifier: involved_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: regulation of mitotic spindle assembly.'
action: KEEP_AS_NON_CORE
reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
supported_by:
- reference_id: PMID:22724069
supporting_text: Borealin interacts directly with the Snf7 components of ESCRT-III
- reference_id: PMID:22724069
supporting_text: controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:1902774
label: late endosome to lysosome transport
evidence_type: IMP
original_reference_id: PMID:17984323
qualifier: involved_in
review:
summary: 'Supported PN-relevant autophagy/endolysosomal CHMP4A context: late endosome to lysosome transport.'
action: ACCEPT
reason: CHMP4A/Snf7-1 depletion causes autophagosome accumulation in human neurons, and ESCRT/MVB function is required for autophagic degradation; this supports retaining autophagy and autophagosome-context annotations without claiming CHMP4A alone was directly assayed as the phagophore-sealing effector.
supported_by:
- reference_id: PMID:21975012
supporting_text: SiRNA knockdown of hSnf7-1 in human neurons leads to autophagosome accumulation
- reference_id: PMID:17984323
supporting_text: Functional multivesicular bodies are required for autophagic clearance
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:1904930
label: amphisome membrane
evidence_type: IDA
original_reference_id: PMID:17984323
qualifier: located_in
review:
summary: 'Supported PN-relevant autophagy/endolysosomal CHMP4A context: amphisome membrane.'
action: ACCEPT
reason: CHMP4A/Snf7-1 depletion causes autophagosome accumulation in human neurons, and ESCRT/MVB function is required for autophagic degradation; this supports retaining autophagy and autophagosome-context annotations without claiming CHMP4A alone was directly assayed as the phagophore-sealing effector.
supported_by:
- reference_id: PMID:21975012
supporting_text: SiRNA knockdown of hSnf7-1 in human neurons leads to autophagosome accumulation
- reference_id: PMID:17984323
supporting_text: Functional multivesicular bodies are required for autophagic clearance
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0050877
label: nervous system process
evidence_type: IMP
original_reference_id: PMID:21975012
qualifier: involved_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: nervous system process.'
action: KEEP_AS_NON_CORE
reason: The neuron paper supports CHMP4A-dependent neuronal survival and cargo turnover, but nervous system process is a broad phenotype rather than CHMP4A core molecular/cellular function.
supported_by:
- reference_id: PMID:21975012
supporting_text: hSnf7-1 and hSnf7-2 are required for the survival of human neurons
- reference_id: PMID:21975012
supporting_text: hSnf7-1 and hSnf7-2 may have preferred interacting partners to form distinct ESCRT-III with different cellular functions
- term:
id: GO:0071985
label: multivesicular body sorting pathway
evidence_type: IMP
original_reference_id: PMID:21975012
qualifier: involved_in
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: multivesicular body sorting pathway.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: PMID:18209100
supporting_text: ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
- reference_id: PMID:18209100
supporting_text: Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- term:
id: GO:0000815
label: ESCRT III complex
evidence_type: IDA
original_reference_id: PMID:18209100
qualifier: part_of
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: ESCRT III complex.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: PMID:18209100
supporting_text: ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
- reference_id: PMID:18209100
supporting_text: Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- term:
id: GO:0042802
label: identical protein binding
evidence_type: IPI
original_reference_id: PMID:18209100
qualifier: enables
review:
summary: identical protein binding captures CHMP4A self-association but is less accurate than ESCRT-III polymerization and membrane bending.
action: MODIFY
reason: CHMP4A forms curved ESCRT-III filaments/polymers that bend membranes; homodimer or identical-protein binding terms are weaker molecular descriptions.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
proposed_replacement_terms:
- id: GO:0051258
label: protein polymerization
- id: GO:0180020
label: membrane bending activity
- term:
id: GO:0051258
label: protein polymerization
evidence_type: IMP
original_reference_id: PMID:18209100
qualifier: involved_in
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: protein polymerization.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: PMID:18209100
supporting_text: assemble into regular approximately 5-nm filaments that curve and self-associate
- reference_id: PMID:18209100
supporting_text: proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:18641129
qualifier: enables
review:
summary: 'Generic protein binding is not informative for CHMP4A: protein binding.'
action: MARK_AS_OVER_ANNOTATED
reason: CHMP4A has real ESCRT, ALIX, Borealin, VPS4, and high-throughput interactions, but the curated function should describe ESCRT-III polymerization, membrane bending/fission, and specific ESCRT-complex contexts rather than plain protein binding.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: PMID:18511562
supporting_text: Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins (CHMP4A-C)
- reference_id: PMID:18209100
supporting_text: assemble into regular approximately 5-nm filaments that curve and self-associate
- reference_id: PMID:18209100
supporting_text: proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
- term:
id: GO:0016236
label: macroautophagy
evidence_type: TAS
original_reference_id: PMID:20588296
qualifier: involved_in
review:
summary: 'Supported PN-relevant autophagy/endolysosomal CHMP4A context: macroautophagy.'
action: ACCEPT
reason: CHMP4A/Snf7-1 depletion causes autophagosome accumulation in human neurons, and ESCRT/MVB function is required for autophagic degradation; this supports retaining autophagy and autophagosome-context annotations without claiming CHMP4A alone was directly assayed as the phagophore-sealing effector.
supported_by:
- reference_id: PMID:21975012
supporting_text: SiRNA knockdown of hSnf7-1 in human neurons leads to autophagosome accumulation
- reference_id: PMID:17984323
supporting_text: Functional multivesicular bodies are required for autophagic clearance
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0000815
label: ESCRT III complex
evidence_type: TAS
original_reference_id: PMID:20588296
qualifier: part_of
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: ESCRT III complex.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: PMID:18209100
supporting_text: ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
- reference_id: PMID:18209100
supporting_text: Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- term:
id: GO:0036258
label: multivesicular body assembly
evidence_type: TAS
original_reference_id: PMID:20588296
qualifier: involved_in
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: multivesicular body assembly.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: PMID:18209100
supporting_text: ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
- reference_id: PMID:18209100
supporting_text: Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- term:
id: GO:0039702
label: viral budding via host ESCRT complex
evidence_type: TAS
original_reference_id: PMID:20588296
qualifier: involved_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: viral budding via host ESCRT complex.'
action: KEEP_AS_NON_CORE
reason: Viral budding is directly supported as ESCRT hijacking but is not an endogenous core CHMP4A proteostasis function.
supported_by:
- reference_id: PMID:18511562
supporting_text: ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex
- reference_id: PMID:24878737
supporting_text: Structure of cellular ESCRT-III spirals and their relationship to HIV budding
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0000815
label: ESCRT III complex
evidence_type: IDA
original_reference_id: PMID:24878737
qualifier: part_of
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: ESCRT III complex.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: PMID:18209100
supporting_text: ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
- reference_id: PMID:18209100
supporting_text: Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:24878737
qualifier: located_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: cytoplasm.'
action: KEEP_AS_NON_CORE
reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
supported_by:
- reference_id: PMID:21975012
supporting_text: Both hSnf7-1 and hSnf7-2 were expressed in human postmitotic neurons and seemed to be present in both the nucleus and cytoplasm
- term:
id: GO:0005768
label: endosome
evidence_type: IDA
original_reference_id: PMID:24878737
qualifier: colocalizes_with
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: endosome.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- reference_id: PMID:18209100
supporting_text: ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
- reference_id: PMID:18209100
supporting_text: Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
- term:
id: GO:0005886
label: plasma membrane
evidence_type: IDA
original_reference_id: PMID:24878737
qualifier: colocalizes_with
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: plasma membrane.'
action: KEEP_AS_NON_CORE
reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- term:
id: GO:0010324
label: membrane invagination
evidence_type: IMP
original_reference_id: PMID:24878737
qualifier: involved_in
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: membrane invagination.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: PMID:18209100
supporting_text: assemble into regular approximately 5-nm filaments that curve and self-associate
- reference_id: PMID:18209100
supporting_text: proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
- term:
id: GO:0030117
label: membrane coat
evidence_type: IMP
original_reference_id: PMID:24878737
qualifier: part_of
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: membrane coat.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: PMID:18209100
supporting_text: assemble into regular approximately 5-nm filaments that curve and self-associate
- reference_id: PMID:18209100
supporting_text: proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
- term:
id: GO:0051258
label: protein polymerization
evidence_type: IMP
original_reference_id: PMID:24878737
qualifier: involved_in
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: protein polymerization.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: PMID:18209100
supporting_text: assemble into regular approximately 5-nm filaments that curve and self-associate
- reference_id: PMID:18209100
supporting_text: proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- term:
id: GO:0039702
label: viral budding via host ESCRT complex
evidence_type: IGI
original_reference_id: PMID:24107264
qualifier: involved_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: viral budding via host ESCRT complex.'
action: KEEP_AS_NON_CORE
reason: Viral budding is directly supported as ESCRT hijacking but is not an endogenous core CHMP4A proteostasis function.
supported_by:
- reference_id: PMID:18511562
supporting_text: ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex
- reference_id: PMID:24878737
supporting_text: Structure of cellular ESCRT-III spirals and their relationship to HIV budding
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:14519844
qualifier: enables
review:
summary: 'Generic protein binding is not informative for CHMP4A: protein binding.'
action: MARK_AS_OVER_ANNOTATED
reason: CHMP4A has real ESCRT, ALIX, Borealin, VPS4, and high-throughput interactions, but the curated function should describe ESCRT-III polymerization, membrane bending/fission, and specific ESCRT-complex contexts rather than plain protein binding.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: PMID:18511562
supporting_text: Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins (CHMP4A-C)
- reference_id: PMID:18209100
supporting_text: assemble into regular approximately 5-nm filaments that curve and self-associate
- reference_id: PMID:18209100
supporting_text: proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
- term:
id: GO:0042803
label: protein homodimerization activity
evidence_type: IPI
original_reference_id: PMID:14519844
qualifier: enables
review:
summary: protein homodimerization activity captures CHMP4A self-association but is less accurate than ESCRT-III polymerization and membrane bending.
action: MODIFY
reason: CHMP4A forms curved ESCRT-III filaments/polymers that bend membranes; homodimer or identical-protein binding terms are weaker molecular descriptions.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
proposed_replacement_terms:
- id: GO:0051258
label: protein polymerization
- id: GO:0180020
label: membrane bending activity
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:14505570
qualifier: enables
review:
summary: 'Generic protein binding is not informative for CHMP4A: protein binding.'
action: MARK_AS_OVER_ANNOTATED
reason: CHMP4A has real ESCRT, ALIX, Borealin, VPS4, and high-throughput interactions, but the curated function should describe ESCRT-III polymerization, membrane bending/fission, and specific ESCRT-complex contexts rather than plain protein binding.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: PMID:18511562
supporting_text: Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins (CHMP4A-C)
- reference_id: PMID:18209100
supporting_text: assemble into regular approximately 5-nm filaments that curve and self-associate
- reference_id: PMID:18209100
supporting_text: proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
- term:
id: GO:0000815
label: ESCRT III complex
evidence_type: IDA
original_reference_id: PMID:21975012
qualifier: part_of
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: ESCRT III complex.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: PMID:18209100
supporting_text: ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
- reference_id: PMID:18209100
supporting_text: Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:21975012
qualifier: enables
review:
summary: 'Generic protein binding is not informative for CHMP4A: protein binding.'
action: MARK_AS_OVER_ANNOTATED
reason: CHMP4A has real ESCRT, ALIX, Borealin, VPS4, and high-throughput interactions, but the curated function should describe ESCRT-III polymerization, membrane bending/fission, and specific ESCRT-complex contexts rather than plain protein binding.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: PMID:18511562
supporting_text: Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins (CHMP4A-C)
- reference_id: PMID:18209100
supporting_text: assemble into regular approximately 5-nm filaments that curve and self-associate
- reference_id: PMID:18209100
supporting_text: proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:21975012
qualifier: located_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: nucleus.'
action: KEEP_AS_NON_CORE
reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
supported_by:
- reference_id: PMID:21975012
supporting_text: Both hSnf7-1 and hSnf7-2 were expressed in human postmitotic neurons and seemed to be present in both the nucleus and cytoplasm
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:21975012
qualifier: located_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: cytoplasm.'
action: KEEP_AS_NON_CORE
reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
supported_by:
- reference_id: PMID:21975012
supporting_text: Both hSnf7-1 and hSnf7-2 were expressed in human postmitotic neurons and seemed to be present in both the nucleus and cytoplasm
- term:
id: GO:0006620
label: post-translational protein targeting to endoplasmic reticulum membrane
evidence_type: IMP
original_reference_id: PMID:21975012
qualifier: involved_in
review:
summary: The cited CHMP4A neuron paper does not support post-translational targeting to the ER membrane.
action: REMOVE
reason: PMID:21975012 supports CHMP4A/Snf7-1 in neuron survival, ESCRT-III cargo turnover, and autophagosome accumulation; it does not provide evidence that CHMP4A mediates ER membrane targeting.
supported_by:
- reference_id: PMID:21975012
supporting_text: hSnf7-1 and hSnf7-2 are required for the survival of human neurons
- reference_id: PMID:21975012
supporting_text: hSnf7-1 and hSnf7-2 may have preferred interacting partners to form distinct ESCRT-III with different cellular functions
- term:
id: GO:0006900
label: vesicle budding from membrane
evidence_type: IMP
original_reference_id: PMID:18209100
qualifier: involved_in
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: vesicle budding from membrane.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: PMID:18209100
supporting_text: assemble into regular approximately 5-nm filaments that curve and self-associate
- reference_id: PMID:18209100
supporting_text: proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
- term:
id: GO:0006900
label: vesicle budding from membrane
evidence_type: IGI
original_reference_id: PMID:18209100
qualifier: involved_in
review:
summary: 'Supported core CHMP4A ESCRT-III/MVB membrane-remodeling annotation: vesicle budding from membrane.'
action: ACCEPT
reason: CHMP4A is a core ESCRT-III/Snf7-family subunit that polymerizes on endosomal and MVB membranes to promote membrane budding/fission and MVB cargo sorting.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: PMID:18209100
supporting_text: assemble into regular approximately 5-nm filaments that curve and self-associate
- reference_id: PMID:18209100
supporting_text: proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
- term:
id: GO:0009898
label: cytoplasmic side of plasma membrane
evidence_type: IDA
original_reference_id: PMID:18209100
qualifier: located_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: cytoplasmic side of plasma membrane.'
action: KEEP_AS_NON_CORE
reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- term:
id: GO:0051117
label: ATPase binding
evidence_type: IPI
original_reference_id: PMID:18209100
qualifier: enables
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: ATPase binding.'
action: KEEP_AS_NON_CORE
reason: ATPase binding reflects VPS4 engagement with CHMP4A filaments and is useful context, but CHMP4A itself is the ESCRT-III polymerizing membrane-remodeling subunit.
supported_by:
- reference_id: PMID:18209100
supporting_text: Binding to a coexpressed adenosine triphosphate hydrolysis-deficient mutant of VPS4B draws these filaments together
- reference_id: UniProt:Q9BY43
supporting_text: Interacts with VPS4A
- term:
id: GO:0097320
label: plasma membrane tubulation
evidence_type: IMP
original_reference_id: PMID:18209100
qualifier: involved_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: plasma membrane tubulation.'
action: KEEP_AS_NON_CORE
reason: Plasma membrane tubulation is a useful overexpression/model phenotype for CHMP4A filament curvature, not the normal core biological process.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- term:
id: GO:0097320
label: plasma membrane tubulation
evidence_type: IGI
original_reference_id: PMID:18209100
qualifier: involved_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: plasma membrane tubulation.'
action: KEEP_AS_NON_CORE
reason: Plasma membrane tubulation is a useful overexpression/model phenotype for CHMP4A filament curvature, not the normal core biological process.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: UniProt:Q9BY43
supporting_text: Cytoplasmic vesicle membrane. Late endosome membrane
- reference_id: UniProt:Q9BY43
supporting_text: Membrane-associated
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-3159232
qualifier: located_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: cytosol.'
action: KEEP_AS_NON_CORE
reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
supported_by:
- reference_id: PMID:21975012
supporting_text: Both hSnf7-1 and hSnf7-2 were expressed in human postmitotic neurons and seemed to be present in both the nucleus and cytoplasm
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-917693
qualifier: located_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: cytosol.'
action: KEEP_AS_NON_CORE
reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
supported_by:
- reference_id: PMID:21975012
supporting_text: Both hSnf7-1 and hSnf7-2 were expressed in human postmitotic neurons and seemed to be present in both the nucleus and cytoplasm
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-917700
qualifier: located_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: cytosol.'
action: KEEP_AS_NON_CORE
reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
supported_by:
- reference_id: PMID:21975012
supporting_text: Both hSnf7-1 and hSnf7-2 were expressed in human postmitotic neurons and seemed to be present in both the nucleus and cytoplasm
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9668389
qualifier: located_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: cytosol.'
action: KEEP_AS_NON_CORE
reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
supported_by:
- reference_id: PMID:21975012
supporting_text: Both hSnf7-1 and hSnf7-2 were expressed in human postmitotic neurons and seemed to be present in both the nucleus and cytoplasm
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9668395
qualifier: located_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: cytosol.'
action: KEEP_AS_NON_CORE
reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
supported_by:
- reference_id: PMID:21975012
supporting_text: Both hSnf7-1 and hSnf7-2 were expressed in human postmitotic neurons and seemed to be present in both the nucleus and cytoplasm
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9668398
qualifier: located_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: cytosol.'
action: KEEP_AS_NON_CORE
reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
supported_by:
- reference_id: PMID:21975012
supporting_text: Both hSnf7-1 and hSnf7-2 were expressed in human postmitotic neurons and seemed to be present in both the nucleus and cytoplasm
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9668405
qualifier: located_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: cytosol.'
action: KEEP_AS_NON_CORE
reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
supported_by:
- reference_id: PMID:21975012
supporting_text: Both hSnf7-1 and hSnf7-2 were expressed in human postmitotic neurons and seemed to be present in both the nucleus and cytoplasm
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9668415
qualifier: located_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: cytosol.'
action: KEEP_AS_NON_CORE
reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
supported_by:
- reference_id: PMID:21975012
supporting_text: Both hSnf7-1 and hSnf7-2 were expressed in human postmitotic neurons and seemed to be present in both the nucleus and cytoplasm
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9668419
qualifier: located_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: cytosol.'
action: KEEP_AS_NON_CORE
reason: This location or output context is supported or plausible for CHMP4A but is broad or secondary relative to its core ESCRT-III MVB/endosomal membrane-remodeling role.
supported_by:
- reference_id: PMID:21975012
supporting_text: Both hSnf7-1 and hSnf7-2 were expressed in human postmitotic neurons and seemed to be present in both the nucleus and cytoplasm
- term:
id: GO:0030496
label: midbody
evidence_type: IDA
original_reference_id: PMID:22724069
qualifier: located_in
review:
summary: 'True or plausible non-core CHMP4A ESCRT context: midbody.'
action: KEEP_AS_NON_CORE
reason: Cytokinesis/midbody and spindle annotations are supported ESCRT output contexts, but they are not the central endolysosomal/proteostasis function emphasized for CHMP4A.
supported_by:
- reference_id: PMID:22724069
supporting_text: Borealin interacts directly with the Snf7 components of ESCRT-III
- reference_id: PMID:22724069
supporting_text: controls abscission timing through inhibition of ESCRT-III Snf7 polymerization
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- term:
id: GO:0180020
label: membrane bending activity
evidence_type: IDA
original_reference_id: PMID:18209100
qualifier: enables
review:
summary: New CHMP4A molecular-function annotation supported by direct ESCRT-III filament/membrane curvature evidence.
action: NEW
reason: PMID:18209100 directly shows CHMP4A/hSnf7-1-containing ESCRT-III filaments promote or stabilize negative membrane curvature and outward budding, making membrane bending activity more informative than generic protein binding.
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: PMID:18209100
supporting_text: assemble into regular approximately 5-nm filaments that curve and self-associate
- reference_id: PMID:18209100
supporting_text: proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO terms
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning models
findings: []
- id: PMID:14505570
title: The protein network of HIV budding.
findings: []
- id: PMID:14519844
title: Divergent retroviral late-budding domains recruit vacuolar protein sorting factors by using alternative adaptor proteins.
findings: []
- id: PMID:16189514
title: Towards a proteome-scale map of the human protein-protein interaction network.
findings: []
- id: PMID:16505166
title: Recycling of ESCRTs by the AAA-ATPase Vps4 is regulated by a conserved VSL region in Vta1.
findings: []
- id: PMID:16554368
title: The ESCRT-III subunit hVps24 is required for degradation but not silencing of the epidermal growth factor receptor.
findings: []
- id: PMID:16730941
title: 'A systematic analysis of human CHMP protein interactions: additional MIT domain-containing proteins bind to multiple components of the human ESCRT III complex.'
findings: []
- id: PMID:17350572
title: Structural and biochemical studies of ALIX/AIP1 and its role in retrovirus budding.
findings: []
- id: PMID:17984323
title: Functional multivesicular bodies are required for autophagic clearance of protein aggregates associated with neurodegenerative disease.
findings: []
- id: PMID:18209100
title: Plasma membrane deformation by circular arrays of ESCRT-III protein filaments.
findings: []
- id: PMID:18511562
title: ALIX-CHMP4 interactions in the human ESCRT pathway.
findings: []
- id: PMID:18641129
title: Differential requirements for Alix and ESCRT-III in cytokinesis and HIV-1 release.
findings: []
- id: PMID:19234443
title: Membrane scission by the ESCRT-III complex.
findings: []
- id: PMID:20588296
title: 'Membrane budding and scission by the ESCRT machinery: it''s all in the neck.'
findings: []
- id: PMID:20616062
title: Human ESCRT-III and VPS4 proteins are required for centrosome and spindle maintenance.
findings: []
- id: PMID:21975012
title: ESCRT-III subunits Snf7-1 and Snf7-2 differentially regulate transmembrane cargos in hESC-derived human neurons.
findings: []
- id: PMID:22724069
title: The chromosomal passenger complex controls the function of endosomal sorting complex required for transport-III Snf7 proteins during cytokinesis.
findings: []
- id: PMID:24107264
title: ESCRT requirements for EIAV budding.
findings: []
- id: PMID:24482116
title: ESCRT machinery is required for plasma membrane repair.
findings: []
- id: PMID:24878737
title: Structure of cellular ESCRT-III spirals and their relationship to HIV budding.
findings: []
- id: PMID:25416956
title: A proteome-scale map of the human interactome network.
findings: []
- id: PMID:26040712
title: Spastin and ESCRT-III coordinate mitotic spindle disassembly and nuclear envelope sealing.
findings: []
- id: PMID:26040713
title: ESCRT-III controls nuclear envelope reformation.
findings: []
- id: PMID:31515488
title: Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations.
findings: []
- id: PMID:36107470
title: Comprehensive analysis of the human ESCRT-III-MIT domain interactome reveals new cofactors for cytokinetic abscission.
findings: []
- id: Reactome:R-HSA-3159232
title: Recruitment Of HIV Virion Budding Machinery
findings: []
- id: Reactome:R-HSA-917693
title: ESCRT Disassembly
findings: []
- id: Reactome:R-HSA-917700
title: MVB Vesicle Formation
findings: []
- id: Reactome:R-HSA-9668389
title: VPS4 binds ESCRT-III assemblies at nuclear envelope (NE) fenestrations
findings: []
- id: Reactome:R-HSA-9668395
title: CHMP7 binds CC2D1B
findings: []
- id: Reactome:R-HSA-9668398
title: CHMP7 binds CHMP4B, which recruits other subunits of the ESCRT-III complex
findings: []
- id: Reactome:R-HSA-9668405
title: SPAST (spastin) binds the IST1 subunit of ESCRT-III at the sites of microtubule attachment to chromatin
findings: []
- id: Reactome:R-HSA-9668415
title: VPS4 mediates disassembly of ESCRTIII subunits to promote sealing of holes in the nuclear envelope
findings: []
- id: Reactome:R-HSA-9668419
title: SPAST (spastin) mediates the severing of microtubules at chromosome attachment sites
findings: []
- id: UniProt:Q9BY43
title: UniProt entry for CHMP4A (Q9BY43)
findings:
- statement: CHMP4A is a probable core ESCRT-III component involved in MVB formation, endosomal cargo sorting, membrane fission, and exosomal release.
- id: file:human/CHMP4A/CHMP4A-notes.md
title: Local curation notes for CHMP4A
findings:
- statement: Local synthesis identifies ESCRT-III polymerization/membrane bending and MVB/endosomal sorting as core CHMP4A functions, with autophagy and other ESCRT outputs retained in context.
core_functions:
- molecular_function:
id: GO:0180020
label: membrane bending activity
description: CHMP4A/Snf7-1 is a core ESCRT-III structural subunit that polymerizes into curved membrane-associated filaments and promotes or stabilizes negative membrane curvature for reverse-topology budding/fission.
in_complex:
id: GO:0000815
label: ESCRT III complex
directly_involved_in:
- id: GO:0090148
label: membrane fission
- id: GO:0006900
label: vesicle budding from membrane
locations:
- id: GO:0031902
label: late endosome membrane
- id: GO:0032585
label: multivesicular body membrane
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: believed to mediate the necessary vesicle extrusion and/or membrane fission activities
- reference_id: PMID:18209100
supporting_text: form novel membrane-attached filaments that can promote or stabilize negative curvature and outward budding
- reference_id: PMID:19234443
supporting_text: ESCRT-III has the instrinsic ability to drive the scission of membrane necks
- reference_id: PMID:18209100
supporting_text: assemble into regular approximately 5-nm filaments that curve and self-associate
- reference_id: PMID:18209100
supporting_text: proteins hSnf7-1 (CHMP4A) and hSnf7-2 (CHMP4B)
- description: CHMP4A-containing ESCRT-III assemblies mediate MVB intraluminal vesicle formation and ubiquitin-dependent endosomal cargo sorting toward endolysosomal degradation.
in_complex:
id: GO:0000815
label: ESCRT III complex
directly_involved_in:
- id: GO:0071985
label: multivesicular body sorting pathway
- id: GO:0036258
label: multivesicular body assembly
- id: GO:0043162
label: ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
locations:
- id: GO:0032585
label: multivesicular body membrane
- id: GO:0005768
label: endosome
supported_by:
- reference_id: UniProt:Q9BY43
supporting_text: Probable core component of the endosomal sorting required for transport complex III (ESCRT-III)
- reference_id: UniProt:Q9BY43
supporting_text: involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs
- reference_id: PMID:18209100
supporting_text: ESCRT-III polymers delineate and help generate the luminal vesicles of multivesicular bodies
- reference_id: PMID:18209100
supporting_text: Multivesicular bodies (MVBs) are mid-stage endosomes that contain intraluminal vesicles
- description: CHMP4A/Snf7-1 contributes to autophagy/autophagosome maturation contexts as part of ESCRT-dependent endolysosomal membrane remodeling; direct human-neuron knockdown causes autophagosome accumulation.
in_complex:
id: GO:0000815
label: ESCRT III complex
directly_involved_in:
- id: GO:0097352
label: autophagosome maturation
- id: GO:0016236
label: macroautophagy
locations:
- id: GO:0000421
label: autophagosome membrane
- id: GO:1904930
label: amphisome membrane
- id: GO:0005765
label: lysosomal membrane
supported_by:
- reference_id: PMID:21975012
supporting_text: SiRNA knockdown of hSnf7-1 in human neurons leads to autophagosome accumulation
- reference_id: PMID:17984323
supporting_text: Functional multivesicular bodies are required for autophagic clearance
proposed_new_terms: []
suggested_questions:
- question: Which CHMP4 paralog, CHMP4A, CHMP4B, or CHMP4C, is the dominant Snf7-family subunit during human phagophore closure and autophagosome maturation?
- question: Should GO annotations distinguish direct CHMP4A membrane-bending/polymer function from broader ESCRT output processes such as viral budding, plasma membrane repair, and nuclear envelope sealing?
- question: Does CHMP4A preferentially pair with CHMP2A in autophagy and endosomal cargo sorting, as suggested by human-neuron cargo turnover assays?
suggested_experiments:
- description: Use endogenous CHMP4A tagging and acute CHMP4A depletion/rescue during starvation-induced autophagy to image recruitment to phagophores, autophagosomes, and amphisomes.
hypothesis: If CHMP4A directly participates in autophagosome maturation or closure, it should be transiently recruited to autophagy membranes and rescue should require its polymerization/membrane-binding region.
- description: Compare wild-type CHMP4A with ALIX-binding and C-terminal autoinhibition mutants in MVB cargo sorting, ESCRT spiral formation, plasma membrane repair, and viral budding assays.
hypothesis: CHMP4A polymerization and partner recruitment requirements differ across endogenous ESCRT outputs and virus-hijacked budding.
- description: Biochemically reconstitute CHMP4A-containing human ESCRT-III polymers with CHMP2A/CHMP3/VPS4 and test membrane bending/scission on defined liposomes.
hypothesis: CHMP4A contributes Snf7-family filament curvature that can drive membrane bending and support reverse-topology scission in a minimal human ESCRT-III module.