CHMP7 encodes an ESCRT-III-like / ESCRT-II-III hybrid protein that acts most specifically as an upstream adaptor for nuclear-envelope ESCRT recruitment. During late anaphase, LEMD2/LEM2 recruits CHMP7 to the reforming nuclear envelope and chromatin-disk periphery, where CHMP7 helps recruit downstream ESCRT-III components such as CHMP2A and IST1/CHMP8 to seal nuclear-envelope holes and coordinate spindle microtubule disassembly. CHMP7 also has evidence for CHMP4B-associated endosomal sorting, but this appears secondary to its better-defined nuclear-envelope repair/sealing role.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0005635
nuclear envelope
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Supported core CHMP7 nuclear-envelope function: nuclear envelope.
Reason: CHMP7 is recruited by LEMD2/LEM2 to the reforming nuclear envelope and recruits downstream ESCRT-III factors for nuclear membrane closure/sealing.
Supporting Evidence:
PMID:26040712
ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
PMID:26040712
coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection sites
PMID:28242692
CHMP7 and LEM2 enrich at the same region of the chromatin disk periphery
PMID:28242692
CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
PMID:28242692
recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
UniProt:Q8WUX9
required to recruit the ESCRT-III complex to the nuclear envelope (NE) during late anaphase
file:human/CHMP7/CHMP7-notes.md
the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III factors to the nuclear envelope for nuclear membrane closure
|
|
GO:0031468
nuclear membrane reassembly
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Supported core CHMP7 nuclear-envelope function: nuclear membrane reassembly.
Reason: CHMP7 is recruited by LEMD2/LEM2 to the reforming nuclear envelope and recruits downstream ESCRT-III factors for nuclear membrane closure/sealing.
Supporting Evidence:
PMID:26040712
ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
PMID:26040712
coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection sites
PMID:28242692
CHMP7 and LEM2 enrich at the same region of the chromatin disk periphery
PMID:28242692
CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
PMID:28242692
recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
UniProt:Q8WUX9
required to recruit the ESCRT-III complex to the nuclear envelope (NE) during late anaphase
file:human/CHMP7/CHMP7-notes.md
the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III factors to the nuclear envelope for nuclear membrane closure
|
|
GO:0000815
ESCRT III complex
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Supported CHMP7 ESCRT-III-associated complex annotation: ESCRT III complex.
Reason: CHMP7 is an ESCRT-III-like factor that recruits and associates with downstream ESCRT-III components, especially at the reforming nuclear envelope.
Supporting Evidence:
PMID:26040712
ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
PMID:28242692
recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
PMID:16856878
CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting pathway
file:human/CHMP7/CHMP7-notes.md
CHMP7 is an ESCRT-III-like / ESCRT-II-III hybrid protein with two literature-supported contexts
|
|
GO:0009898
cytoplasmic side of plasma membrane
|
IBA
GO_REF:0000033 |
MARK AS OVER ANNOTATED |
Summary: Plasma-membrane location/context is over-extended for CHMP7: cytoplasmic side of plasma membrane.
Reason: CHMP7-specific evidence localizes its core recruitment function to the reforming nuclear envelope; plasma membrane context comes from broader ESCRT/viral-budding pathway inference.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Treat viral budding annotations as over-annotated for CHMP7.
file:human/CHMP7/CHMP7-notes.md
the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III factors to the nuclear envelope for nuclear membrane closure
|
|
GO:0032511
late endosome to vacuole transport via multivesicular body sorting pathway
|
IBA
GO_REF:0000033 |
MODIFY |
Summary: The endosomal-sorting evidence is real, but late endosome to vacuole transport via multivesicular body sorting pathway should be expressed with human MVB/endolysosomal terms.
Reason: CHMP7 has an older supported endosomal-sorting phenotype, but vacuole wording is less appropriate for human curation than MVB sorting / late endosome-to-lysosome transport.
Proposed replacements:
multivesicular body sorting pathway
late endosome to lysosome transport
Supporting Evidence:
PMID:16856878
CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting pathway
PMID:16856878
positive interaction between the C-terminal half of CHMP7 and CHMP4b
file:human/CHMP7/CHMP7-notes.md
PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is nuclear-envelope ESCRT recruitment.
|
|
GO:0000776
kinetochore
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: kinetochore.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0001778
plasma membrane repair
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: plasma membrane repair.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0005635
nuclear envelope
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: Supported core CHMP7 nuclear-envelope function: nuclear envelope.
Reason: CHMP7 is recruited by LEMD2/LEM2 to the reforming nuclear envelope and recruits downstream ESCRT-III factors for nuclear membrane closure/sealing.
Supporting Evidence:
PMID:26040712
ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
PMID:26040712
coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection sites
PMID:28242692
CHMP7 and LEM2 enrich at the same region of the chromatin disk periphery
PMID:28242692
CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
PMID:28242692
recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
UniProt:Q8WUX9
required to recruit the ESCRT-III complex to the nuclear envelope (NE) during late anaphase
file:human/CHMP7/CHMP7-notes.md
the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III factors to the nuclear envelope for nuclear membrane closure
|
|
GO:0005643
nuclear pore
|
IEA
GO_REF:0000117 |
MODIFY |
Summary: The localization essence is nuclear-envelope recruitment, not stable membership in nuclear pore.
Reason: CHMP7 localizes to reforming nuclear-envelope/chromatin-disk sites; nuclear envelope is the more accurate cellular-component term.
Proposed replacements:
nuclear envelope
Supporting Evidence:
PMID:26040712
coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection sites
PMID:28242692
recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
file:human/CHMP7/CHMP7-notes.md
exit from mitosis, nuclear pore, chromatin location, and spindle-assembly wording should be interpreted through the specific CHMP7 role in nuclear membrane reassembly and nuclear-envelope sealing
|
|
GO:0005737
cytoplasm
|
IEA
GO_REF:0000044 |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: cytoplasm.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0005765
lysosomal membrane
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: lysosomal membrane.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0005828
kinetochore microtubule
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: kinetochore microtubule.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0007034
vacuolar transport
|
IEA
GO_REF:0000002 |
MODIFY |
Summary: The endosomal-sorting evidence is real, but vacuolar transport should be expressed with human MVB/endolysosomal terms.
Reason: CHMP7 has an older supported endosomal-sorting phenotype, but vacuole wording is less appropriate for human curation than MVB sorting / late endosome-to-lysosome transport.
Proposed replacements:
multivesicular body sorting pathway
late endosome to lysosome transport
Supporting Evidence:
PMID:16856878
CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting pathway
PMID:16856878
positive interaction between the C-terminal half of CHMP7 and CHMP4b
file:human/CHMP7/CHMP7-notes.md
PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is nuclear-envelope ESCRT recruitment.
|
|
GO:0007080
mitotic metaphase chromosome alignment
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: mitotic metaphase chromosome alignment.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0030496
midbody
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: midbody.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0031468
nuclear membrane reassembly
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Supported core CHMP7 nuclear-envelope function: nuclear membrane reassembly.
Reason: CHMP7 is recruited by LEMD2/LEM2 to the reforming nuclear envelope and recruits downstream ESCRT-III factors for nuclear membrane closure/sealing.
Supporting Evidence:
PMID:26040712
ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
PMID:26040712
coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection sites
PMID:28242692
CHMP7 and LEM2 enrich at the same region of the chromatin disk periphery
PMID:28242692
CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
PMID:28242692
recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
UniProt:Q8WUX9
required to recruit the ESCRT-III complex to the nuclear envelope (NE) during late anaphase
file:human/CHMP7/CHMP7-notes.md
the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III factors to the nuclear envelope for nuclear membrane closure
|
|
GO:0032585
multivesicular body membrane
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: Supported but secondary CHMP7 endosomal/MVB ESCRT context: multivesicular body membrane.
Reason: CHMP7 has a reported endosomal-sorting phenotype and CHMP4B association, but its strongest CHMP7-specific mechanism is LEMD2-dependent ESCRT recruitment to the reforming nuclear envelope.
Supporting Evidence:
PMID:16856878
CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting pathway
PMID:16856878
positive interaction between the C-terminal half of CHMP7 and CHMP4b
file:human/CHMP7/CHMP7-notes.md
PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is nuclear-envelope ESCRT recruitment.
|
|
GO:0039702
viral budding via host ESCRT complex
|
IEA
GO_REF:0000117 |
MARK AS OVER ANNOTATED |
Summary: Over-annotated CHMP7 viral-budding term: viral budding via host ESCRT complex.
Reason: The CHMP7 viral evidence is a dominant-negative overexpression effect on virus-like particle release, not an endogenous core CHMP7 viral-budding function.
Supporting Evidence:
PMID:16856878
dominant-negative effect of overexpressed GFP-CHMP7
file:human/CHMP7/CHMP7-notes.md
The direct evidence is dominant-negative overexpression affecting virus-like particle release, not a demonstrated endogenous core viral-budding function.
|
|
GO:0043162
ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: Supported but secondary CHMP7 endosomal/MVB ESCRT context: ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway.
Reason: CHMP7 has a reported endosomal-sorting phenotype and CHMP4B association, but its strongest CHMP7-specific mechanism is LEMD2-dependent ESCRT recruitment to the reforming nuclear envelope.
Supporting Evidence:
PMID:16856878
CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting pathway
PMID:16856878
positive interaction between the C-terminal half of CHMP7 and CHMP4b
file:human/CHMP7/CHMP7-notes.md
PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is nuclear-envelope ESCRT recruitment.
|
|
GO:0046761
viral budding from plasma membrane
|
IEA
GO_REF:0000117 |
MARK AS OVER ANNOTATED |
Summary: Over-annotated CHMP7 viral-budding term: viral budding from plasma membrane.
Reason: The CHMP7 viral evidence is a dominant-negative overexpression effect on virus-like particle release, not an endogenous core CHMP7 viral-budding function.
Supporting Evidence:
PMID:16856878
dominant-negative effect of overexpressed GFP-CHMP7
file:human/CHMP7/CHMP7-notes.md
The direct evidence is dominant-negative overexpression affecting virus-like particle release, not a demonstrated endogenous core viral-budding function.
|
|
GO:0061952
midbody abscission
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: midbody abscission.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0071985
multivesicular body sorting pathway
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: Supported but secondary CHMP7 endosomal/MVB ESCRT context: multivesicular body sorting pathway.
Reason: CHMP7 has a reported endosomal-sorting phenotype and CHMP4B association, but its strongest CHMP7-specific mechanism is LEMD2-dependent ESCRT recruitment to the reforming nuclear envelope.
Supporting Evidence:
PMID:16856878
CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting pathway
PMID:16856878
positive interaction between the C-terminal half of CHMP7 and CHMP4b
file:human/CHMP7/CHMP7-notes.md
PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is nuclear-envelope ESCRT recruitment.
|
|
GO:0097352
autophagosome maturation
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: autophagosome maturation.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:1901673
regulation of mitotic spindle assembly
|
IEA
GO_REF:0000117 |
MODIFY |
Summary: The cell-cycle/spindle wording is too broad for CHMP7: regulation of mitotic spindle assembly.
Reason: CHMP7 contributes specifically to nuclear membrane reassembly and NE sealing during mitotic exit rather than to broad mitotic progression or spindle assembly.
Proposed replacements:
nuclear membrane reassembly
Supporting Evidence:
PMID:26040712
coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection sites
PMID:28242692
recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
file:human/CHMP7/CHMP7-notes.md
exit from mitosis, nuclear pore, chromatin location, and spindle-assembly wording should be interpreted through the specific CHMP7 role in nuclear membrane reassembly and nuclear-envelope sealing
|
|
GO:1902774
late endosome to lysosome transport
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: Supported but secondary CHMP7 endosomal/MVB ESCRT context: late endosome to lysosome transport.
Reason: CHMP7 has a reported endosomal-sorting phenotype and CHMP4B association, but its strongest CHMP7-specific mechanism is LEMD2-dependent ESCRT recruitment to the reforming nuclear envelope.
Supporting Evidence:
PMID:16856878
CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting pathway
PMID:16856878
positive interaction between the C-terminal half of CHMP7 and CHMP4b
file:human/CHMP7/CHMP7-notes.md
PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is nuclear-envelope ESCRT recruitment.
|
|
GO:1904930
amphisome membrane
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: amphisome membrane.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0005515
protein binding
|
IPI
PMID:16856878 CHMP7, a novel ESCRT-III-related protein, associates with CH... |
MARK AS OVER ANNOTATED |
Summary: Generic protein binding is over-annotated for CHMP7: protein binding.
Reason: The meaningful interactions are CHMP7-LEMD2 and CHMP7-CHMP4B; GO:0005515 is too generic to represent CHMP7 function.
Supporting Evidence:
PMID:16856878
positive interaction between the C-terminal half of CHMP7 and CHMP4b
PMID:28242692
CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
file:human/CHMP7/CHMP7-notes.md
The meaningful molecular interactions are CHMP7-LEMD2 and CHMP7-CHMP4B, not undifferentiated protein binding.
|
|
GO:0005515
protein binding
|
IPI
PMID:30194290 Interrogating the protein interactomes of RAS isoforms ident... |
MARK AS OVER ANNOTATED |
Summary: Generic protein binding is over-annotated for CHMP7: protein binding.
Reason: The meaningful interactions are CHMP7-LEMD2 and CHMP7-CHMP4B; GO:0005515 is too generic to represent CHMP7 function.
Supporting Evidence:
PMID:16856878
positive interaction between the C-terminal half of CHMP7 and CHMP4b
PMID:28242692
CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
file:human/CHMP7/CHMP7-notes.md
The meaningful molecular interactions are CHMP7-LEMD2 and CHMP7-CHMP4B, not undifferentiated protein binding.
|
|
GO:0005515
protein binding
|
IPI
PMID:32814053 Interactome Mapping Provides a Network of Neurodegenerative ... |
MARK AS OVER ANNOTATED |
Summary: Generic protein binding is over-annotated for CHMP7: protein binding.
Reason: The meaningful interactions are CHMP7-LEMD2 and CHMP7-CHMP4B; GO:0005515 is too generic to represent CHMP7 function.
Supporting Evidence:
PMID:16856878
positive interaction between the C-terminal half of CHMP7 and CHMP4b
PMID:28242692
CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
file:human/CHMP7/CHMP7-notes.md
The meaningful molecular interactions are CHMP7-LEMD2 and CHMP7-CHMP4B, not undifferentiated protein binding.
|
|
GO:0005654
nucleoplasm
|
IDA
GO_REF:0000052 |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: nucleoplasm.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0005829
cytosol
|
IDA
GO_REF:0000052 |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: cytosol.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0000421
autophagosome membrane
|
IDA
PMID:17984323 Functional multivesicular bodies are required for autophagic... |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: autophagosome membrane.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0000776
kinetochore
|
IDA
PMID:26040712 Spastin and ESCRT-III coordinate mitotic spindle disassembly... |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: kinetochore.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0000815
ESCRT III complex
|
NAS
PMID:36107470 Comprehensive analysis of the human ESCRT-III-MIT domain int... |
ACCEPT |
Summary: Supported CHMP7 ESCRT-III-associated complex annotation: ESCRT III complex.
Reason: CHMP7 is an ESCRT-III-like factor that recruits and associates with downstream ESCRT-III components, especially at the reforming nuclear envelope.
Supporting Evidence:
PMID:26040712
ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
PMID:28242692
recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
PMID:16856878
CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting pathway
file:human/CHMP7/CHMP7-notes.md
CHMP7 is an ESCRT-III-like / ESCRT-II-III hybrid protein with two literature-supported contexts
|
|
GO:0001778
plasma membrane repair
|
IDA
PMID:24482116 ESCRT machinery is required for plasma membrane repair. |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: plasma membrane repair.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0005643
nuclear pore
|
IDA
PMID:26040713 ESCRT-III controls nuclear envelope reformation. |
MODIFY |
Summary: The localization essence is nuclear-envelope recruitment, not stable membership in nuclear pore.
Reason: CHMP7 localizes to reforming nuclear-envelope/chromatin-disk sites; nuclear envelope is the more accurate cellular-component term.
Proposed replacements:
nuclear envelope
Supporting Evidence:
PMID:26040712
coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection sites
PMID:28242692
recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
file:human/CHMP7/CHMP7-notes.md
exit from mitosis, nuclear pore, chromatin location, and spindle-assembly wording should be interpreted through the specific CHMP7 role in nuclear membrane reassembly and nuclear-envelope sealing
|
|
GO:0005765
lysosomal membrane
|
IDA
PMID:17984323 Functional multivesicular bodies are required for autophagic... |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: lysosomal membrane.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0005828
kinetochore microtubule
|
IDA
PMID:26040712 Spastin and ESCRT-III coordinate mitotic spindle disassembly... |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: kinetochore microtubule.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0005886
plasma membrane
|
IDA
PMID:24878737 Structure of cellular ESCRT-III spirals and their relationsh... |
MARK AS OVER ANNOTATED |
Summary: Plasma-membrane location/context is over-extended for CHMP7: plasma membrane.
Reason: CHMP7-specific evidence localizes its core recruitment function to the reforming nuclear envelope; plasma membrane context comes from broader ESCRT/viral-budding pathway inference.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Treat viral budding annotations as over-annotated for CHMP7.
file:human/CHMP7/CHMP7-notes.md
the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III factors to the nuclear envelope for nuclear membrane closure
|
|
GO:0006914
autophagy
|
IMP
PMID:17984323 Functional multivesicular bodies are required for autophagic... |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: autophagy.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0006997
nucleus organization
|
IMP
PMID:20616062 Human ESCRT-III and VPS4 proteins are required for centrosom... |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: nucleus organization.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0007080
mitotic metaphase chromosome alignment
|
IMP
PMID:20616062 Human ESCRT-III and VPS4 proteins are required for centrosom... |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: mitotic metaphase chromosome alignment.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0030496
midbody
|
IDA
PMID:26040712 Spastin and ESCRT-III coordinate mitotic spindle disassembly... |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: midbody.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0031468
nuclear membrane reassembly
|
IMP
PMID:26040713 ESCRT-III controls nuclear envelope reformation. |
ACCEPT |
Summary: Supported core CHMP7 nuclear-envelope function: nuclear membrane reassembly.
Reason: CHMP7 is recruited by LEMD2/LEM2 to the reforming nuclear envelope and recruits downstream ESCRT-III factors for nuclear membrane closure/sealing.
Supporting Evidence:
PMID:26040712
ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
PMID:26040712
coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection sites
PMID:28242692
CHMP7 and LEM2 enrich at the same region of the chromatin disk periphery
PMID:28242692
CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
PMID:28242692
recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
UniProt:Q8WUX9
required to recruit the ESCRT-III complex to the nuclear envelope (NE) during late anaphase
file:human/CHMP7/CHMP7-notes.md
the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III factors to the nuclear envelope for nuclear membrane closure
|
|
GO:0032585
multivesicular body membrane
|
IDA
PMID:16554368 The ESCRT-III subunit hVps24 is required for degradation but... |
KEEP AS NON CORE |
Summary: Supported but secondary CHMP7 endosomal/MVB ESCRT context: multivesicular body membrane.
Reason: CHMP7 has a reported endosomal-sorting phenotype and CHMP4B association, but its strongest CHMP7-specific mechanism is LEMD2-dependent ESCRT recruitment to the reforming nuclear envelope.
Supporting Evidence:
PMID:16856878
CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting pathway
PMID:16856878
positive interaction between the C-terminal half of CHMP7 and CHMP4b
file:human/CHMP7/CHMP7-notes.md
PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is nuclear-envelope ESCRT recruitment.
|
|
GO:0036258
multivesicular body assembly
|
NAS
PMID:16505166 Recycling of ESCRTs by the AAA-ATPase Vps4 is regulated by a... |
KEEP AS NON CORE |
Summary: Supported but secondary CHMP7 endosomal/MVB ESCRT context: multivesicular body assembly.
Reason: CHMP7 has a reported endosomal-sorting phenotype and CHMP4B association, but its strongest CHMP7-specific mechanism is LEMD2-dependent ESCRT recruitment to the reforming nuclear envelope.
Supporting Evidence:
PMID:16856878
CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting pathway
PMID:16856878
positive interaction between the C-terminal half of CHMP7 and CHMP4b
file:human/CHMP7/CHMP7-notes.md
PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is nuclear-envelope ESCRT recruitment.
|
|
GO:0039702
viral budding via host ESCRT complex
|
IDA
PMID:24878737 Structure of cellular ESCRT-III spirals and their relationsh... |
MARK AS OVER ANNOTATED |
Summary: Over-annotated CHMP7 viral-budding term: viral budding via host ESCRT complex.
Reason: The CHMP7 viral evidence is a dominant-negative overexpression effect on virus-like particle release, not an endogenous core CHMP7 viral-budding function.
Supporting Evidence:
PMID:16856878
dominant-negative effect of overexpressed GFP-CHMP7
file:human/CHMP7/CHMP7-notes.md
The direct evidence is dominant-negative overexpression affecting virus-like particle release, not a demonstrated endogenous core viral-budding function.
|
|
GO:0043162
ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
|
IDA
PMID:17984323 Functional multivesicular bodies are required for autophagic... |
KEEP AS NON CORE |
Summary: Supported but secondary CHMP7 endosomal/MVB ESCRT context: ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway.
Reason: CHMP7 has a reported endosomal-sorting phenotype and CHMP4B association, but its strongest CHMP7-specific mechanism is LEMD2-dependent ESCRT recruitment to the reforming nuclear envelope.
Supporting Evidence:
PMID:16856878
CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting pathway
PMID:16856878
positive interaction between the C-terminal half of CHMP7 and CHMP4b
file:human/CHMP7/CHMP7-notes.md
PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is nuclear-envelope ESCRT recruitment.
|
|
GO:0046761
viral budding from plasma membrane
|
IDA
PMID:24878737 Structure of cellular ESCRT-III spirals and their relationsh... |
MARK AS OVER ANNOTATED |
Summary: Over-annotated CHMP7 viral-budding term: viral budding from plasma membrane.
Reason: The CHMP7 viral evidence is a dominant-negative overexpression effect on virus-like particle release, not an endogenous core CHMP7 viral-budding function.
Supporting Evidence:
PMID:16856878
dominant-negative effect of overexpressed GFP-CHMP7
file:human/CHMP7/CHMP7-notes.md
The direct evidence is dominant-negative overexpression affecting virus-like particle release, not a demonstrated endogenous core viral-budding function.
|
|
GO:0051469
vesicle fusion with vacuole
|
NAS
PMID:16505166 Recycling of ESCRTs by the AAA-ATPase Vps4 is regulated by a... |
MODIFY |
Summary: This fusion/vacuole annotation should be generalized to the better-supported endolysosomal route: vesicle fusion with vacuole.
Reason: The available CHMP7 evidence supports endosomal sorting pathway involvement, not a specific vesicle-fusion activity.
Proposed replacements:
late endosome to lysosome transport
Supporting Evidence:
PMID:16856878
CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting pathway
PMID:16856878
positive interaction between the C-terminal half of CHMP7 and CHMP4b
file:human/CHMP7/CHMP7-notes.md
PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is nuclear-envelope ESCRT recruitment.
|
|
GO:0061763
multivesicular body-lysosome fusion
|
NAS
PMID:16505166 Recycling of ESCRTs by the AAA-ATPase Vps4 is regulated by a... |
MODIFY |
Summary: This fusion/vacuole annotation should be generalized to the better-supported endolysosomal route: multivesicular body-lysosome fusion.
Reason: The available CHMP7 evidence supports endosomal sorting pathway involvement, not a specific vesicle-fusion activity.
Proposed replacements:
late endosome to lysosome transport
Supporting Evidence:
PMID:16856878
CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting pathway
PMID:16856878
positive interaction between the C-terminal half of CHMP7 and CHMP4b
file:human/CHMP7/CHMP7-notes.md
PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is nuclear-envelope ESCRT recruitment.
|
|
GO:0061952
midbody abscission
|
IMP
PMID:20616062 Human ESCRT-III and VPS4 proteins are required for centrosom... |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: midbody abscission.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0071985
multivesicular body sorting pathway
|
IDA
PMID:16554368 The ESCRT-III subunit hVps24 is required for degradation but... |
KEEP AS NON CORE |
Summary: Supported but secondary CHMP7 endosomal/MVB ESCRT context: multivesicular body sorting pathway.
Reason: CHMP7 has a reported endosomal-sorting phenotype and CHMP4B association, but its strongest CHMP7-specific mechanism is LEMD2-dependent ESCRT recruitment to the reforming nuclear envelope.
Supporting Evidence:
PMID:16856878
CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting pathway
PMID:16856878
positive interaction between the C-terminal half of CHMP7 and CHMP4b
file:human/CHMP7/CHMP7-notes.md
PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is nuclear-envelope ESCRT recruitment.
|
|
GO:0090148
membrane fission
|
NAS
PMID:19234443 Membrane scission by the ESCRT-III complex. |
ACCEPT |
Summary: Supported ESCRT membrane-remodeling output for CHMP7 nuclear-envelope closure: membrane fission.
Reason: Nuclear-envelope sealing is an ESCRT membrane-closure/fission-like process and is the best-supported CHMP7-specific core function.
Supporting Evidence:
PMID:26040712
ESCRT-III, VPS4 and spastin cooperate to coordinate nuclear envelope sealing and spindle disassembly
PMID:28242692
recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
file:human/CHMP7/CHMP7-notes.md
Accept as core: nuclear envelope, nuclear membrane reassembly, ESCRT III complex, membrane fission
|
|
GO:0097352
autophagosome maturation
|
IMP
PMID:17984323 Functional multivesicular bodies are required for autophagic... |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: autophagosome maturation.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:1901673
regulation of mitotic spindle assembly
|
IMP
PMID:20616062 Human ESCRT-III and VPS4 proteins are required for centrosom... |
MODIFY |
Summary: The cell-cycle/spindle wording is too broad for CHMP7: regulation of mitotic spindle assembly.
Reason: CHMP7 contributes specifically to nuclear membrane reassembly and NE sealing during mitotic exit rather than to broad mitotic progression or spindle assembly.
Proposed replacements:
nuclear membrane reassembly
Supporting Evidence:
PMID:26040712
coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection sites
PMID:28242692
recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
file:human/CHMP7/CHMP7-notes.md
exit from mitosis, nuclear pore, chromatin location, and spindle-assembly wording should be interpreted through the specific CHMP7 role in nuclear membrane reassembly and nuclear-envelope sealing
|
|
GO:1902774
late endosome to lysosome transport
|
IMP
PMID:17984323 Functional multivesicular bodies are required for autophagic... |
KEEP AS NON CORE |
Summary: Supported but secondary CHMP7 endosomal/MVB ESCRT context: late endosome to lysosome transport.
Reason: CHMP7 has a reported endosomal-sorting phenotype and CHMP4B association, but its strongest CHMP7-specific mechanism is LEMD2-dependent ESCRT recruitment to the reforming nuclear envelope.
Supporting Evidence:
PMID:16856878
CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting pathway
PMID:16856878
positive interaction between the C-terminal half of CHMP7 and CHMP4b
file:human/CHMP7/CHMP7-notes.md
PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is nuclear-envelope ESCRT recruitment.
|
|
GO:1904930
amphisome membrane
|
IDA
PMID:17984323 Functional multivesicular bodies are required for autophagic... |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: amphisome membrane.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0005635
nuclear envelope
|
EXP
PMID:28242692 LEM2 recruits CHMP7 for ESCRT-mediated nuclear envelope clos... |
ACCEPT |
Summary: Supported core CHMP7 nuclear-envelope function: nuclear envelope.
Reason: CHMP7 is recruited by LEMD2/LEM2 to the reforming nuclear envelope and recruits downstream ESCRT-III factors for nuclear membrane closure/sealing.
Supporting Evidence:
PMID:26040712
ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
PMID:26040712
coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection sites
PMID:28242692
CHMP7 and LEM2 enrich at the same region of the chromatin disk periphery
PMID:28242692
CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
PMID:28242692
recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
UniProt:Q8WUX9
required to recruit the ESCRT-III complex to the nuclear envelope (NE) during late anaphase
file:human/CHMP7/CHMP7-notes.md
the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III factors to the nuclear envelope for nuclear membrane closure
|
|
GO:0005737
cytoplasm
|
EXP
PMID:16856878 CHMP7, a novel ESCRT-III-related protein, associates with CH... |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: cytoplasm.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0000785
chromatin
|
IDA
PMID:28242692 LEM2 recruits CHMP7 for ESCRT-mediated nuclear envelope clos... |
MODIFY |
Summary: The localization essence is nuclear-envelope recruitment, not stable membership in chromatin.
Reason: CHMP7 localizes to reforming nuclear-envelope/chromatin-disk sites; nuclear envelope is the more accurate cellular-component term.
Proposed replacements:
nuclear envelope
Supporting Evidence:
PMID:26040712
coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection sites
PMID:28242692
recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
file:human/CHMP7/CHMP7-notes.md
exit from mitosis, nuclear pore, chromatin location, and spindle-assembly wording should be interpreted through the specific CHMP7 role in nuclear membrane reassembly and nuclear-envelope sealing
|
|
GO:0031468
nuclear membrane reassembly
|
TAS
PMID:28242692 LEM2 recruits CHMP7 for ESCRT-mediated nuclear envelope clos... |
ACCEPT |
Summary: Supported core CHMP7 nuclear-envelope function: nuclear membrane reassembly.
Reason: CHMP7 is recruited by LEMD2/LEM2 to the reforming nuclear envelope and recruits downstream ESCRT-III factors for nuclear membrane closure/sealing.
Supporting Evidence:
PMID:26040712
ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
PMID:26040712
coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection sites
PMID:28242692
CHMP7 and LEM2 enrich at the same region of the chromatin disk periphery
PMID:28242692
CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
PMID:28242692
recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
UniProt:Q8WUX9
required to recruit the ESCRT-III complex to the nuclear envelope (NE) during late anaphase
file:human/CHMP7/CHMP7-notes.md
the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III factors to the nuclear envelope for nuclear membrane closure
|
|
GO:0071168
protein localization to chromatin
|
IMP
PMID:28242692 LEM2 recruits CHMP7 for ESCRT-mediated nuclear envelope clos... |
ACCEPT |
Summary: Supported CHMP7-dependent recruitment of ESCRT factors to chromatin disks/reforming NE: protein localization to chromatin.
Reason: CHMP7-dependent recruitment of IST1/CHMP8 and CHMP2A to chromatin disks is part of its nuclear-envelope ESCRT recruitment function.
Supporting Evidence:
PMID:28242692
CHMP7 and LEM2 enrich at the same region of the chromatin disk periphery
PMID:28242692
recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
file:human/CHMP7/CHMP7-notes.md
protein localization to chromatin / chromatin disk periphery where this represents LEMD2-dependent recruitment of CHMP7 and downstream ESCRT factors to the reforming nuclear envelope
|
|
GO:0000815
ESCRT III complex
|
NAS
PMID:28242692 LEM2 recruits CHMP7 for ESCRT-mediated nuclear envelope clos... |
ACCEPT |
Summary: Supported CHMP7 ESCRT-III-associated complex annotation: ESCRT III complex.
Reason: CHMP7 is an ESCRT-III-like factor that recruits and associates with downstream ESCRT-III components, especially at the reforming nuclear envelope.
Supporting Evidence:
PMID:26040712
ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
PMID:28242692
recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
PMID:16856878
CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting pathway
file:human/CHMP7/CHMP7-notes.md
CHMP7 is an ESCRT-III-like / ESCRT-II-III hybrid protein with two literature-supported contexts
|
|
GO:0005515
protein binding
|
IPI
PMID:28242692 LEM2 recruits CHMP7 for ESCRT-mediated nuclear envelope clos... |
MARK AS OVER ANNOTATED |
Summary: Generic protein binding is over-annotated for CHMP7: protein binding.
Reason: The meaningful interactions are CHMP7-LEMD2 and CHMP7-CHMP4B; GO:0005515 is too generic to represent CHMP7 function.
Supporting Evidence:
PMID:16856878
positive interaction between the C-terminal half of CHMP7 and CHMP4b
PMID:28242692
CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
file:human/CHMP7/CHMP7-notes.md
The meaningful molecular interactions are CHMP7-LEMD2 and CHMP7-CHMP4B, not undifferentiated protein binding.
|
|
GO:0000815
ESCRT III complex
|
IDA
PMID:26040712 Spastin and ESCRT-III coordinate mitotic spindle disassembly... |
ACCEPT |
Summary: Supported CHMP7 ESCRT-III-associated complex annotation: ESCRT III complex.
Reason: CHMP7 is an ESCRT-III-like factor that recruits and associates with downstream ESCRT-III components, especially at the reforming nuclear envelope.
Supporting Evidence:
PMID:26040712
ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
PMID:28242692
recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
PMID:16856878
CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting pathway
file:human/CHMP7/CHMP7-notes.md
CHMP7 is an ESCRT-III-like / ESCRT-II-III hybrid protein with two literature-supported contexts
|
|
GO:0005635
nuclear envelope
|
IDA
PMID:26040712 Spastin and ESCRT-III coordinate mitotic spindle disassembly... |
ACCEPT |
Summary: Supported core CHMP7 nuclear-envelope function: nuclear envelope.
Reason: CHMP7 is recruited by LEMD2/LEM2 to the reforming nuclear envelope and recruits downstream ESCRT-III factors for nuclear membrane closure/sealing.
Supporting Evidence:
PMID:26040712
ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
PMID:26040712
coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection sites
PMID:28242692
CHMP7 and LEM2 enrich at the same region of the chromatin disk periphery
PMID:28242692
CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
PMID:28242692
recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
UniProt:Q8WUX9
required to recruit the ESCRT-III complex to the nuclear envelope (NE) during late anaphase
file:human/CHMP7/CHMP7-notes.md
the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III factors to the nuclear envelope for nuclear membrane closure
|
|
GO:0010458
exit from mitosis
|
IMP
PMID:26040712 Spastin and ESCRT-III coordinate mitotic spindle disassembly... |
MODIFY |
Summary: The cell-cycle/spindle wording is too broad for CHMP7: exit from mitosis.
Reason: CHMP7 contributes specifically to nuclear membrane reassembly and NE sealing during mitotic exit rather than to broad mitotic progression or spindle assembly.
Proposed replacements:
nuclear membrane reassembly
Supporting Evidence:
PMID:26040712
coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection sites
PMID:28242692
recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
file:human/CHMP7/CHMP7-notes.md
exit from mitosis, nuclear pore, chromatin location, and spindle-assembly wording should be interpreted through the specific CHMP7 role in nuclear membrane reassembly and nuclear-envelope sealing
|
|
GO:0031468
nuclear membrane reassembly
|
IMP
PMID:26040712 Spastin and ESCRT-III coordinate mitotic spindle disassembly... |
ACCEPT |
Summary: Supported core CHMP7 nuclear-envelope function: nuclear membrane reassembly.
Reason: CHMP7 is recruited by LEMD2/LEM2 to the reforming nuclear envelope and recruits downstream ESCRT-III factors for nuclear membrane closure/sealing.
Supporting Evidence:
PMID:26040712
ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
PMID:26040712
coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection sites
PMID:28242692
CHMP7 and LEM2 enrich at the same region of the chromatin disk periphery
PMID:28242692
CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
PMID:28242692
recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
UniProt:Q8WUX9
required to recruit the ESCRT-III complex to the nuclear envelope (NE) during late anaphase
file:human/CHMP7/CHMP7-notes.md
the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III factors to the nuclear envelope for nuclear membrane closure
|
|
GO:0036258
multivesicular body assembly
|
NAS
PMID:20588296 Membrane budding and scission by the ESCRT machinery: it's a... |
KEEP AS NON CORE |
Summary: Supported but secondary CHMP7 endosomal/MVB ESCRT context: multivesicular body assembly.
Reason: CHMP7 has a reported endosomal-sorting phenotype and CHMP4B association, but its strongest CHMP7-specific mechanism is LEMD2-dependent ESCRT recruitment to the reforming nuclear envelope.
Supporting Evidence:
PMID:16856878
CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting pathway
PMID:16856878
positive interaction between the C-terminal half of CHMP7 and CHMP4b
file:human/CHMP7/CHMP7-notes.md
PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is nuclear-envelope ESCRT recruitment.
|
|
GO:0039702
viral budding via host ESCRT complex
|
NAS
PMID:20588296 Membrane budding and scission by the ESCRT machinery: it's a... |
MARK AS OVER ANNOTATED |
Summary: Over-annotated CHMP7 viral-budding term: viral budding via host ESCRT complex.
Reason: The CHMP7 viral evidence is a dominant-negative overexpression effect on virus-like particle release, not an endogenous core CHMP7 viral-budding function.
Supporting Evidence:
PMID:16856878
dominant-negative effect of overexpressed GFP-CHMP7
file:human/CHMP7/CHMP7-notes.md
The direct evidence is dominant-negative overexpression affecting virus-like particle release, not a demonstrated endogenous core viral-budding function.
|
|
GO:1904903
ESCRT III complex disassembly
|
NAS
PMID:20588296 Membrane budding and scission by the ESCRT machinery: it's a... |
KEEP AS NON CORE |
Summary: Supported but secondary CHMP7 endosomal/MVB ESCRT context: ESCRT III complex disassembly.
Reason: CHMP7 has a reported endosomal-sorting phenotype and CHMP4B association, but its strongest CHMP7-specific mechanism is LEMD2-dependent ESCRT recruitment to the reforming nuclear envelope.
Supporting Evidence:
PMID:16856878
CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting pathway
PMID:16856878
positive interaction between the C-terminal half of CHMP7 and CHMP4b
file:human/CHMP7/CHMP7-notes.md
PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is nuclear-envelope ESCRT recruitment.
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-3159232 |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: cytosol.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-917693 |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: cytosol.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-917700 |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: cytosol.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-9668335 |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: cytosol.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-9668389 |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: cytosol.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-9668395 |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: cytosol.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-9668398 |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: cytosol.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-9668405 |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: cytosol.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-9668415 |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: cytosol.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-9668419 |
KEEP AS NON CORE |
Summary: Plausible secondary ESCRT pathway or broad location context for CHMP7: cytosol.
Reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
Supporting Evidence:
file:human/CHMP7/CHMP7-notes.md
Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm, kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
|
|
GO:0000815
ESCRT III complex
|
IDA
PMID:16856878 CHMP7, a novel ESCRT-III-related protein, associates with CH... |
ACCEPT |
Summary: Supported CHMP7 ESCRT-III-associated complex annotation: ESCRT III complex.
Reason: CHMP7 is an ESCRT-III-like factor that recruits and associates with downstream ESCRT-III components, especially at the reforming nuclear envelope.
Supporting Evidence:
PMID:26040712
ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
PMID:28242692
recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
PMID:16856878
CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting pathway
file:human/CHMP7/CHMP7-notes.md
CHMP7 is an ESCRT-III-like / ESCRT-II-III hybrid protein with two literature-supported contexts
|
|
GO:0045324
late endosome to vacuole transport
|
IMP
PMID:16856878 CHMP7, a novel ESCRT-III-related protein, associates with CH... |
MODIFY |
Summary: The endosomal-sorting evidence is real, but late endosome to vacuole transport should be expressed with human MVB/endolysosomal terms.
Reason: CHMP7 has an older supported endosomal-sorting phenotype, but vacuole wording is less appropriate for human curation than MVB sorting / late endosome-to-lysosome transport.
Proposed replacements:
multivesicular body sorting pathway
late endosome to lysosome transport
Supporting Evidence:
PMID:16856878
CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting pathway
PMID:16856878
positive interaction between the C-terminal half of CHMP7 and CHMP4b
file:human/CHMP7/CHMP7-notes.md
PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is nuclear-envelope ESCRT recruitment.
|
Q: Can endogenous CHMP7 rescue assays separate LEMD2 binding, CHMP4B recruitment, and VPS4-dependent ESCRT turnover during nuclear-envelope sealing?
Q: Should CHMP7 endosomal-sorting annotations remain non-core unless supported by endogenous depletion/rescue assays distinct from dominant-negative overexpression phenotypes?
Q: Is there a more specific GO process term needed for ESCRT-mediated nuclear-envelope hole sealing during anaphase?
Experiment: Rescue CHMP7-depleted cells with wild-type CHMP7 and mutants separating LEMD2 binding, CHMP4B binding, and ESCRT-III recruitment while measuring CHMP2A/IST1 recruitment, NE sealing reporters, and post-mitotic nuclear leakage.
Hypothesis: CHMP7 nuclear-envelope sealing will require LEMD2-dependent recruitment and downstream ESCRT-III assembly more directly than its endosomal-sorting phenotype.
Experiment: Compare acute endogenous CHMP7 depletion/rescue in EGFR or ubiquitinated-cargo MVB sorting assays versus nuclear-envelope sealing assays under matched expression levels.
Hypothesis: The nuclear-envelope phenotype will be the clearest CHMP7-specific core function, whereas endosomal sorting will be weaker or context-dependent.
Experiment: Test whether CHMP7 perturbation affects virus-like particle release only through overexpression/dominant-negative ESCRT disruption or through a reproducible endogenous requirement.
Hypothesis: Viral-budding effects will reflect pathway-level ESCRT perturbation rather than a direct core CHMP7 function.
CHMP7 is an ESCRT-III-like / ESCRT-II-III hybrid protein with two literature-supported contexts: an older endosomal sorting role through CHMP4B association, and a stronger, CHMP7-specific nuclear-envelope role in recruiting ESCRT-III to reforming nuclear-envelope holes during anaphase. For this review, the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III factors to the nuclear envelope for nuclear membrane closure, with endosomal sorting kept as supported but secondary PN context.
The YAML description field was revised to keep it as a standalone biological summary. Project-specific curation framing moved here instead.
*-deep-research*.md file found in this gene directory.ALP → Autophagosome closure maturation and lysosome fusion → Sealing of autophagophore membrane → ESCRT-III complex component AND ALP → Microautophagy → General microautophagy machinery → ESCRT-III complex component (2 rows; shared CHMP template)already_in_goa_exact); "Sealing" group → GO:0000045 autophagosome assembly (more_specific_than_existing_goa); classes context_only/too_broad; branch no_mapping.context_only is the correct ceiling).This file is generated from the current PROTEOSTASIS phase-1 dossier and local gene-review artifacts. Edit the source review, PN mapping, or dossier rather than this generated note when correcting the underlying curation.
id: Q8WUX9
gene_symbol: CHMP7
product_type: PROTEIN
status: COMPLETE
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: >-
CHMP7 encodes an ESCRT-III-like / ESCRT-II-III hybrid protein that acts most specifically as an
upstream adaptor for nuclear-envelope ESCRT recruitment. During late anaphase, LEMD2/LEM2 recruits
CHMP7 to the reforming nuclear envelope and chromatin-disk periphery, where CHMP7 helps recruit
downstream ESCRT-III components such as CHMP2A and IST1/CHMP8 to seal nuclear-envelope holes and
coordinate spindle microtubule disassembly. CHMP7 also has evidence for CHMP4B-associated endosomal
sorting, but this appears secondary to its better-defined nuclear-envelope repair/sealing role.
alternative_products:
- name: '1'
id: Q8WUX9-1
- name: '2'
id: Q8WUX9-2
sequence_note: VSP_056945, VSP_056946
existing_annotations:
- term:
id: GO:0005635
label: nuclear envelope
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: 'Supported core CHMP7 nuclear-envelope function: nuclear envelope.'
action: ACCEPT
reason: CHMP7 is recruited by LEMD2/LEM2 to the reforming nuclear envelope and recruits downstream ESCRT-III factors for
nuclear membrane closure/sealing.
supported_by:
- reference_id: PMID:26040712
supporting_text: ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
- reference_id: PMID:26040712
supporting_text: coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection
sites
- reference_id: PMID:28242692
supporting_text: CHMP7 and LEM2 enrich at the same region of the chromatin disk periphery
- reference_id: PMID:28242692
supporting_text: CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: UniProt:Q8WUX9
supporting_text: required to recruit the ESCRT-III complex to the nuclear envelope (NE) during late anaphase
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III
factors to the nuclear envelope for nuclear membrane closure
- term:
id: GO:0031468
label: nuclear membrane reassembly
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: 'Supported core CHMP7 nuclear-envelope function: nuclear membrane reassembly.'
action: ACCEPT
reason: CHMP7 is recruited by LEMD2/LEM2 to the reforming nuclear envelope and recruits downstream ESCRT-III factors for
nuclear membrane closure/sealing.
supported_by:
- reference_id: PMID:26040712
supporting_text: ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
- reference_id: PMID:26040712
supporting_text: coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection
sites
- reference_id: PMID:28242692
supporting_text: CHMP7 and LEM2 enrich at the same region of the chromatin disk periphery
- reference_id: PMID:28242692
supporting_text: CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: UniProt:Q8WUX9
supporting_text: required to recruit the ESCRT-III complex to the nuclear envelope (NE) during late anaphase
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III
factors to the nuclear envelope for nuclear membrane closure
- term:
id: GO:0000815
label: ESCRT III complex
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: part_of
review:
summary: 'Supported CHMP7 ESCRT-III-associated complex annotation: ESCRT III complex.'
action: ACCEPT
reason: CHMP7 is an ESCRT-III-like factor that recruits and associates with downstream ESCRT-III components, especially
at the reforming nuclear envelope.
supported_by:
- reference_id: PMID:26040712
supporting_text: ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: PMID:16856878
supporting_text: CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting
pathway
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: CHMP7 is an ESCRT-III-like / ESCRT-II-III hybrid protein with two literature-supported contexts
- term:
id: GO:0009898
label: cytoplasmic side of plasma membrane
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: 'Plasma-membrane location/context is over-extended for CHMP7: cytoplasmic side of plasma membrane.'
action: MARK_AS_OVER_ANNOTATED
reason: CHMP7-specific evidence localizes its core recruitment function to the reforming nuclear envelope; plasma membrane
context comes from broader ESCRT/viral-budding pathway inference.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Treat viral budding annotations as over-annotated for CHMP7.
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III
factors to the nuclear envelope for nuclear membrane closure
- term:
id: GO:0032511
label: late endosome to vacuole transport via multivesicular body sorting pathway
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: The endosomal-sorting evidence is real, but late endosome to vacuole transport via multivesicular body sorting
pathway should be expressed with human MVB/endolysosomal terms.
action: MODIFY
reason: CHMP7 has an older supported endosomal-sorting phenotype, but vacuole wording is less appropriate for human curation
than MVB sorting / late endosome-to-lysosome transport.
supported_by:
- reference_id: PMID:16856878
supporting_text: CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting
pathway
- reference_id: PMID:16856878
supporting_text: positive interaction between the C-terminal half of CHMP7 and CHMP4b
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is
nuclear-envelope ESCRT recruitment.
proposed_replacement_terms:
- id: GO:0071985
label: multivesicular body sorting pathway
- id: GO:1902774
label: late endosome to lysosome transport
- term:
id: GO:0000776
label: kinetochore
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: kinetochore.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0001778
label: plasma membrane repair
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: plasma membrane repair.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0005635
label: nuclear envelope
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: 'Supported core CHMP7 nuclear-envelope function: nuclear envelope.'
action: ACCEPT
reason: CHMP7 is recruited by LEMD2/LEM2 to the reforming nuclear envelope and recruits downstream ESCRT-III factors for
nuclear membrane closure/sealing.
supported_by:
- reference_id: PMID:26040712
supporting_text: ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
- reference_id: PMID:26040712
supporting_text: coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection
sites
- reference_id: PMID:28242692
supporting_text: CHMP7 and LEM2 enrich at the same region of the chromatin disk periphery
- reference_id: PMID:28242692
supporting_text: CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: UniProt:Q8WUX9
supporting_text: required to recruit the ESCRT-III complex to the nuclear envelope (NE) during late anaphase
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III
factors to the nuclear envelope for nuclear membrane closure
- term:
id: GO:0005643
label: nuclear pore
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: part_of
review:
summary: The localization essence is nuclear-envelope recruitment, not stable membership in nuclear pore.
action: MODIFY
reason: CHMP7 localizes to reforming nuclear-envelope/chromatin-disk sites; nuclear envelope is the more accurate cellular-component
term.
supported_by:
- reference_id: PMID:26040712
supporting_text: coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection
sites
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: exit from mitosis, nuclear pore, chromatin location, and spindle-assembly wording should be interpreted
through the specific CHMP7 role in nuclear membrane reassembly and nuclear-envelope sealing
proposed_replacement_terms:
- id: GO:0005635
label: nuclear envelope
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: cytoplasm.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0005765
label: lysosomal membrane
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: lysosomal membrane.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0005828
label: kinetochore microtubule
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: kinetochore microtubule.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0007034
label: vacuolar transport
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: involved_in
review:
summary: The endosomal-sorting evidence is real, but vacuolar transport should be expressed with human MVB/endolysosomal
terms.
action: MODIFY
reason: CHMP7 has an older supported endosomal-sorting phenotype, but vacuole wording is less appropriate for human curation
than MVB sorting / late endosome-to-lysosome transport.
supported_by:
- reference_id: PMID:16856878
supporting_text: CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting
pathway
- reference_id: PMID:16856878
supporting_text: positive interaction between the C-terminal half of CHMP7 and CHMP4b
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is
nuclear-envelope ESCRT recruitment.
proposed_replacement_terms:
- id: GO:0071985
label: multivesicular body sorting pathway
- id: GO:1902774
label: late endosome to lysosome transport
- term:
id: GO:0007080
label: mitotic metaphase chromosome alignment
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: mitotic metaphase chromosome alignment.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0030496
label: midbody
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: midbody.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0031468
label: nuclear membrane reassembly
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: 'Supported core CHMP7 nuclear-envelope function: nuclear membrane reassembly.'
action: ACCEPT
reason: CHMP7 is recruited by LEMD2/LEM2 to the reforming nuclear envelope and recruits downstream ESCRT-III factors for
nuclear membrane closure/sealing.
supported_by:
- reference_id: PMID:26040712
supporting_text: ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
- reference_id: PMID:26040712
supporting_text: coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection
sites
- reference_id: PMID:28242692
supporting_text: CHMP7 and LEM2 enrich at the same region of the chromatin disk periphery
- reference_id: PMID:28242692
supporting_text: CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: UniProt:Q8WUX9
supporting_text: required to recruit the ESCRT-III complex to the nuclear envelope (NE) during late anaphase
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III
factors to the nuclear envelope for nuclear membrane closure
- term:
id: GO:0032585
label: multivesicular body membrane
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: located_in
review:
summary: 'Supported but secondary CHMP7 endosomal/MVB ESCRT context: multivesicular body membrane.'
action: KEEP_AS_NON_CORE
reason: CHMP7 has a reported endosomal-sorting phenotype and CHMP4B association, but its strongest CHMP7-specific mechanism
is LEMD2-dependent ESCRT recruitment to the reforming nuclear envelope.
supported_by:
- reference_id: PMID:16856878
supporting_text: CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting
pathway
- reference_id: PMID:16856878
supporting_text: positive interaction between the C-terminal half of CHMP7 and CHMP4b
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is
nuclear-envelope ESCRT recruitment.
- term:
id: GO:0039702
label: viral budding via host ESCRT complex
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: 'Over-annotated CHMP7 viral-budding term: viral budding via host ESCRT complex.'
action: MARK_AS_OVER_ANNOTATED
reason: The CHMP7 viral evidence is a dominant-negative overexpression effect on virus-like particle release, not an endogenous
core CHMP7 viral-budding function.
supported_by:
- reference_id: PMID:16856878
supporting_text: dominant-negative effect of overexpressed GFP-CHMP7
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: The direct evidence is dominant-negative overexpression affecting virus-like particle release, not
a demonstrated endogenous core viral-budding function.
- term:
id: GO:0043162
label: ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: 'Supported but secondary CHMP7 endosomal/MVB ESCRT context: ubiquitin-dependent protein catabolic process via
the multivesicular body sorting pathway.'
action: KEEP_AS_NON_CORE
reason: CHMP7 has a reported endosomal-sorting phenotype and CHMP4B association, but its strongest CHMP7-specific mechanism
is LEMD2-dependent ESCRT recruitment to the reforming nuclear envelope.
supported_by:
- reference_id: PMID:16856878
supporting_text: CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting
pathway
- reference_id: PMID:16856878
supporting_text: positive interaction between the C-terminal half of CHMP7 and CHMP4b
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is
nuclear-envelope ESCRT recruitment.
- term:
id: GO:0046761
label: viral budding from plasma membrane
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: 'Over-annotated CHMP7 viral-budding term: viral budding from plasma membrane.'
action: MARK_AS_OVER_ANNOTATED
reason: The CHMP7 viral evidence is a dominant-negative overexpression effect on virus-like particle release, not an endogenous
core CHMP7 viral-budding function.
supported_by:
- reference_id: PMID:16856878
supporting_text: dominant-negative effect of overexpressed GFP-CHMP7
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: The direct evidence is dominant-negative overexpression affecting virus-like particle release, not
a demonstrated endogenous core viral-budding function.
- term:
id: GO:0061952
label: midbody abscission
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: midbody abscission.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0071985
label: multivesicular body sorting pathway
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: 'Supported but secondary CHMP7 endosomal/MVB ESCRT context: multivesicular body sorting pathway.'
action: KEEP_AS_NON_CORE
reason: CHMP7 has a reported endosomal-sorting phenotype and CHMP4B association, but its strongest CHMP7-specific mechanism
is LEMD2-dependent ESCRT recruitment to the reforming nuclear envelope.
supported_by:
- reference_id: PMID:16856878
supporting_text: CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting
pathway
- reference_id: PMID:16856878
supporting_text: positive interaction between the C-terminal half of CHMP7 and CHMP4b
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is
nuclear-envelope ESCRT recruitment.
- term:
id: GO:0097352
label: autophagosome maturation
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: autophagosome maturation.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:1901673
label: regulation of mitotic spindle assembly
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: 'The cell-cycle/spindle wording is too broad for CHMP7: regulation of mitotic spindle assembly.'
action: MODIFY
reason: CHMP7 contributes specifically to nuclear membrane reassembly and NE sealing during mitotic exit rather than to
broad mitotic progression or spindle assembly.
supported_by:
- reference_id: PMID:26040712
supporting_text: coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection
sites
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: exit from mitosis, nuclear pore, chromatin location, and spindle-assembly wording should be interpreted
through the specific CHMP7 role in nuclear membrane reassembly and nuclear-envelope sealing
proposed_replacement_terms:
- id: GO:0031468
label: nuclear membrane reassembly
- term:
id: GO:1902774
label: late endosome to lysosome transport
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: 'Supported but secondary CHMP7 endosomal/MVB ESCRT context: late endosome to lysosome transport.'
action: KEEP_AS_NON_CORE
reason: CHMP7 has a reported endosomal-sorting phenotype and CHMP4B association, but its strongest CHMP7-specific mechanism
is LEMD2-dependent ESCRT recruitment to the reforming nuclear envelope.
supported_by:
- reference_id: PMID:16856878
supporting_text: CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting
pathway
- reference_id: PMID:16856878
supporting_text: positive interaction between the C-terminal half of CHMP7 and CHMP4b
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is
nuclear-envelope ESCRT recruitment.
- term:
id: GO:1904930
label: amphisome membrane
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: amphisome membrane.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16856878
qualifier: enables
review:
summary: 'Generic protein binding is over-annotated for CHMP7: protein binding.'
action: MARK_AS_OVER_ANNOTATED
reason: The meaningful interactions are CHMP7-LEMD2 and CHMP7-CHMP4B; GO:0005515 is too generic to represent CHMP7 function.
supported_by:
- reference_id: PMID:16856878
supporting_text: positive interaction between the C-terminal half of CHMP7 and CHMP4b
- reference_id: PMID:28242692
supporting_text: CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: The meaningful molecular interactions are CHMP7-LEMD2 and CHMP7-CHMP4B, not undifferentiated protein
binding.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:30194290
qualifier: enables
review:
summary: 'Generic protein binding is over-annotated for CHMP7: protein binding.'
action: MARK_AS_OVER_ANNOTATED
reason: The meaningful interactions are CHMP7-LEMD2 and CHMP7-CHMP4B; GO:0005515 is too generic to represent CHMP7 function.
supported_by:
- reference_id: PMID:16856878
supporting_text: positive interaction between the C-terminal half of CHMP7 and CHMP4b
- reference_id: PMID:28242692
supporting_text: CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: The meaningful molecular interactions are CHMP7-LEMD2 and CHMP7-CHMP4B, not undifferentiated protein
binding.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:32814053
qualifier: enables
review:
summary: 'Generic protein binding is over-annotated for CHMP7: protein binding.'
action: MARK_AS_OVER_ANNOTATED
reason: The meaningful interactions are CHMP7-LEMD2 and CHMP7-CHMP4B; GO:0005515 is too generic to represent CHMP7 function.
supported_by:
- reference_id: PMID:16856878
supporting_text: positive interaction between the C-terminal half of CHMP7 and CHMP4b
- reference_id: PMID:28242692
supporting_text: CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: The meaningful molecular interactions are CHMP7-LEMD2 and CHMP7-CHMP4B, not undifferentiated protein
binding.
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: IDA
original_reference_id: GO_REF:0000052
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: nucleoplasm.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0005829
label: cytosol
evidence_type: IDA
original_reference_id: GO_REF:0000052
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: cytosol.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0000421
label: autophagosome membrane
evidence_type: IDA
original_reference_id: PMID:17984323
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: autophagosome membrane.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0000776
label: kinetochore
evidence_type: IDA
original_reference_id: PMID:26040712
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: kinetochore.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0000815
label: ESCRT III complex
evidence_type: NAS
original_reference_id: PMID:36107470
qualifier: part_of
review:
summary: 'Supported CHMP7 ESCRT-III-associated complex annotation: ESCRT III complex.'
action: ACCEPT
reason: CHMP7 is an ESCRT-III-like factor that recruits and associates with downstream ESCRT-III components, especially
at the reforming nuclear envelope.
supported_by:
- reference_id: PMID:26040712
supporting_text: ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: PMID:16856878
supporting_text: CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting
pathway
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: CHMP7 is an ESCRT-III-like / ESCRT-II-III hybrid protein with two literature-supported contexts
- term:
id: GO:0001778
label: plasma membrane repair
evidence_type: IDA
original_reference_id: PMID:24482116
qualifier: involved_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: plasma membrane repair.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0005643
label: nuclear pore
evidence_type: IDA
original_reference_id: PMID:26040713
qualifier: part_of
review:
summary: The localization essence is nuclear-envelope recruitment, not stable membership in nuclear pore.
action: MODIFY
reason: CHMP7 localizes to reforming nuclear-envelope/chromatin-disk sites; nuclear envelope is the more accurate cellular-component
term.
supported_by:
- reference_id: PMID:26040712
supporting_text: coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection
sites
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: exit from mitosis, nuclear pore, chromatin location, and spindle-assembly wording should be interpreted
through the specific CHMP7 role in nuclear membrane reassembly and nuclear-envelope sealing
proposed_replacement_terms:
- id: GO:0005635
label: nuclear envelope
- term:
id: GO:0005765
label: lysosomal membrane
evidence_type: IDA
original_reference_id: PMID:17984323
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: lysosomal membrane.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0005828
label: kinetochore microtubule
evidence_type: IDA
original_reference_id: PMID:26040712
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: kinetochore microtubule.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0005886
label: plasma membrane
evidence_type: IDA
original_reference_id: PMID:24878737
qualifier: located_in
review:
summary: 'Plasma-membrane location/context is over-extended for CHMP7: plasma membrane.'
action: MARK_AS_OVER_ANNOTATED
reason: CHMP7-specific evidence localizes its core recruitment function to the reforming nuclear envelope; plasma membrane
context comes from broader ESCRT/viral-budding pathway inference.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Treat viral budding annotations as over-annotated for CHMP7.
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III
factors to the nuclear envelope for nuclear membrane closure
- term:
id: GO:0006914
label: autophagy
evidence_type: IMP
original_reference_id: PMID:17984323
qualifier: involved_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: autophagy.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0006997
label: nucleus organization
evidence_type: IMP
original_reference_id: PMID:20616062
qualifier: involved_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: nucleus organization.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0007080
label: mitotic metaphase chromosome alignment
evidence_type: IMP
original_reference_id: PMID:20616062
qualifier: involved_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: mitotic metaphase chromosome alignment.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0030496
label: midbody
evidence_type: IDA
original_reference_id: PMID:26040712
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: midbody.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0031468
label: nuclear membrane reassembly
evidence_type: IMP
original_reference_id: PMID:26040713
qualifier: involved_in
review:
summary: 'Supported core CHMP7 nuclear-envelope function: nuclear membrane reassembly.'
action: ACCEPT
reason: CHMP7 is recruited by LEMD2/LEM2 to the reforming nuclear envelope and recruits downstream ESCRT-III factors for
nuclear membrane closure/sealing.
supported_by:
- reference_id: PMID:26040712
supporting_text: ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
- reference_id: PMID:26040712
supporting_text: coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection
sites
- reference_id: PMID:28242692
supporting_text: CHMP7 and LEM2 enrich at the same region of the chromatin disk periphery
- reference_id: PMID:28242692
supporting_text: CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: UniProt:Q8WUX9
supporting_text: required to recruit the ESCRT-III complex to the nuclear envelope (NE) during late anaphase
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III
factors to the nuclear envelope for nuclear membrane closure
- term:
id: GO:0032585
label: multivesicular body membrane
evidence_type: IDA
original_reference_id: PMID:16554368
qualifier: located_in
review:
summary: 'Supported but secondary CHMP7 endosomal/MVB ESCRT context: multivesicular body membrane.'
action: KEEP_AS_NON_CORE
reason: CHMP7 has a reported endosomal-sorting phenotype and CHMP4B association, but its strongest CHMP7-specific mechanism
is LEMD2-dependent ESCRT recruitment to the reforming nuclear envelope.
supported_by:
- reference_id: PMID:16856878
supporting_text: CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting
pathway
- reference_id: PMID:16856878
supporting_text: positive interaction between the C-terminal half of CHMP7 and CHMP4b
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is
nuclear-envelope ESCRT recruitment.
- term:
id: GO:0036258
label: multivesicular body assembly
evidence_type: NAS
original_reference_id: PMID:16505166
qualifier: involved_in
review:
summary: 'Supported but secondary CHMP7 endosomal/MVB ESCRT context: multivesicular body assembly.'
action: KEEP_AS_NON_CORE
reason: CHMP7 has a reported endosomal-sorting phenotype and CHMP4B association, but its strongest CHMP7-specific mechanism
is LEMD2-dependent ESCRT recruitment to the reforming nuclear envelope.
supported_by:
- reference_id: PMID:16856878
supporting_text: CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting
pathway
- reference_id: PMID:16856878
supporting_text: positive interaction between the C-terminal half of CHMP7 and CHMP4b
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is
nuclear-envelope ESCRT recruitment.
- term:
id: GO:0039702
label: viral budding via host ESCRT complex
evidence_type: IDA
original_reference_id: PMID:24878737
qualifier: involved_in
review:
summary: 'Over-annotated CHMP7 viral-budding term: viral budding via host ESCRT complex.'
action: MARK_AS_OVER_ANNOTATED
reason: The CHMP7 viral evidence is a dominant-negative overexpression effect on virus-like particle release, not an endogenous
core CHMP7 viral-budding function.
supported_by:
- reference_id: PMID:16856878
supporting_text: dominant-negative effect of overexpressed GFP-CHMP7
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: The direct evidence is dominant-negative overexpression affecting virus-like particle release, not
a demonstrated endogenous core viral-budding function.
- term:
id: GO:0043162
label: ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
evidence_type: IDA
original_reference_id: PMID:17984323
qualifier: involved_in
review:
summary: 'Supported but secondary CHMP7 endosomal/MVB ESCRT context: ubiquitin-dependent protein catabolic process via
the multivesicular body sorting pathway.'
action: KEEP_AS_NON_CORE
reason: CHMP7 has a reported endosomal-sorting phenotype and CHMP4B association, but its strongest CHMP7-specific mechanism
is LEMD2-dependent ESCRT recruitment to the reforming nuclear envelope.
supported_by:
- reference_id: PMID:16856878
supporting_text: CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting
pathway
- reference_id: PMID:16856878
supporting_text: positive interaction between the C-terminal half of CHMP7 and CHMP4b
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is
nuclear-envelope ESCRT recruitment.
- term:
id: GO:0046761
label: viral budding from plasma membrane
evidence_type: IDA
original_reference_id: PMID:24878737
qualifier: involved_in
review:
summary: 'Over-annotated CHMP7 viral-budding term: viral budding from plasma membrane.'
action: MARK_AS_OVER_ANNOTATED
reason: The CHMP7 viral evidence is a dominant-negative overexpression effect on virus-like particle release, not an endogenous
core CHMP7 viral-budding function.
supported_by:
- reference_id: PMID:16856878
supporting_text: dominant-negative effect of overexpressed GFP-CHMP7
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: The direct evidence is dominant-negative overexpression affecting virus-like particle release, not
a demonstrated endogenous core viral-budding function.
- term:
id: GO:0051469
label: vesicle fusion with vacuole
evidence_type: NAS
original_reference_id: PMID:16505166
qualifier: involved_in
review:
summary: 'This fusion/vacuole annotation should be generalized to the better-supported endolysosomal route: vesicle fusion
with vacuole.'
action: MODIFY
reason: The available CHMP7 evidence supports endosomal sorting pathway involvement, not a specific vesicle-fusion activity.
supported_by:
- reference_id: PMID:16856878
supporting_text: CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting
pathway
- reference_id: PMID:16856878
supporting_text: positive interaction between the C-terminal half of CHMP7 and CHMP4b
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is
nuclear-envelope ESCRT recruitment.
proposed_replacement_terms:
- id: GO:1902774
label: late endosome to lysosome transport
- term:
id: GO:0061763
label: multivesicular body-lysosome fusion
evidence_type: NAS
original_reference_id: PMID:16505166
qualifier: involved_in
review:
summary: 'This fusion/vacuole annotation should be generalized to the better-supported endolysosomal route: multivesicular
body-lysosome fusion.'
action: MODIFY
reason: The available CHMP7 evidence supports endosomal sorting pathway involvement, not a specific vesicle-fusion activity.
supported_by:
- reference_id: PMID:16856878
supporting_text: CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting
pathway
- reference_id: PMID:16856878
supporting_text: positive interaction between the C-terminal half of CHMP7 and CHMP4b
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is
nuclear-envelope ESCRT recruitment.
proposed_replacement_terms:
- id: GO:1902774
label: late endosome to lysosome transport
- term:
id: GO:0061952
label: midbody abscission
evidence_type: IMP
original_reference_id: PMID:20616062
qualifier: involved_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: midbody abscission.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0071985
label: multivesicular body sorting pathway
evidence_type: IDA
original_reference_id: PMID:16554368
qualifier: involved_in
review:
summary: 'Supported but secondary CHMP7 endosomal/MVB ESCRT context: multivesicular body sorting pathway.'
action: KEEP_AS_NON_CORE
reason: CHMP7 has a reported endosomal-sorting phenotype and CHMP4B association, but its strongest CHMP7-specific mechanism
is LEMD2-dependent ESCRT recruitment to the reforming nuclear envelope.
supported_by:
- reference_id: PMID:16856878
supporting_text: CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting
pathway
- reference_id: PMID:16856878
supporting_text: positive interaction between the C-terminal half of CHMP7 and CHMP4b
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is
nuclear-envelope ESCRT recruitment.
- term:
id: GO:0090148
label: membrane fission
evidence_type: NAS
original_reference_id: PMID:19234443
qualifier: involved_in
review:
summary: 'Supported ESCRT membrane-remodeling output for CHMP7 nuclear-envelope closure: membrane fission.'
action: ACCEPT
reason: Nuclear-envelope sealing is an ESCRT membrane-closure/fission-like process and is the best-supported CHMP7-specific
core function.
supported_by:
- reference_id: PMID:26040712
supporting_text: ESCRT-III, VPS4 and spastin cooperate to coordinate nuclear envelope sealing and spindle disassembly
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: 'Accept as core: nuclear envelope, nuclear membrane reassembly, ESCRT III complex, membrane fission'
- term:
id: GO:0097352
label: autophagosome maturation
evidence_type: IMP
original_reference_id: PMID:17984323
qualifier: involved_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: autophagosome maturation.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:1901673
label: regulation of mitotic spindle assembly
evidence_type: IMP
original_reference_id: PMID:20616062
qualifier: involved_in
review:
summary: 'The cell-cycle/spindle wording is too broad for CHMP7: regulation of mitotic spindle assembly.'
action: MODIFY
reason: CHMP7 contributes specifically to nuclear membrane reassembly and NE sealing during mitotic exit rather than to
broad mitotic progression or spindle assembly.
supported_by:
- reference_id: PMID:26040712
supporting_text: coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection
sites
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: exit from mitosis, nuclear pore, chromatin location, and spindle-assembly wording should be interpreted
through the specific CHMP7 role in nuclear membrane reassembly and nuclear-envelope sealing
proposed_replacement_terms:
- id: GO:0031468
label: nuclear membrane reassembly
- term:
id: GO:1902774
label: late endosome to lysosome transport
evidence_type: IMP
original_reference_id: PMID:17984323
qualifier: involved_in
review:
summary: 'Supported but secondary CHMP7 endosomal/MVB ESCRT context: late endosome to lysosome transport.'
action: KEEP_AS_NON_CORE
reason: CHMP7 has a reported endosomal-sorting phenotype and CHMP4B association, but its strongest CHMP7-specific mechanism
is LEMD2-dependent ESCRT recruitment to the reforming nuclear envelope.
supported_by:
- reference_id: PMID:16856878
supporting_text: CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting
pathway
- reference_id: PMID:16856878
supporting_text: positive interaction between the C-terminal half of CHMP7 and CHMP4b
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is
nuclear-envelope ESCRT recruitment.
- term:
id: GO:1904930
label: amphisome membrane
evidence_type: IDA
original_reference_id: PMID:17984323
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: amphisome membrane.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0005635
label: nuclear envelope
evidence_type: EXP
original_reference_id: PMID:28242692
qualifier: located_in
review:
summary: 'Supported core CHMP7 nuclear-envelope function: nuclear envelope.'
action: ACCEPT
reason: CHMP7 is recruited by LEMD2/LEM2 to the reforming nuclear envelope and recruits downstream ESCRT-III factors for
nuclear membrane closure/sealing.
supported_by:
- reference_id: PMID:26040712
supporting_text: ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
- reference_id: PMID:26040712
supporting_text: coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection
sites
- reference_id: PMID:28242692
supporting_text: CHMP7 and LEM2 enrich at the same region of the chromatin disk periphery
- reference_id: PMID:28242692
supporting_text: CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: UniProt:Q8WUX9
supporting_text: required to recruit the ESCRT-III complex to the nuclear envelope (NE) during late anaphase
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III
factors to the nuclear envelope for nuclear membrane closure
- term:
id: GO:0005737
label: cytoplasm
evidence_type: EXP
original_reference_id: PMID:16856878
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: cytoplasm.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0000785
label: chromatin
evidence_type: IDA
original_reference_id: PMID:28242692
qualifier: located_in
review:
summary: The localization essence is nuclear-envelope recruitment, not stable membership in chromatin.
action: MODIFY
reason: CHMP7 localizes to reforming nuclear-envelope/chromatin-disk sites; nuclear envelope is the more accurate cellular-component
term.
supported_by:
- reference_id: PMID:26040712
supporting_text: coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection
sites
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: exit from mitosis, nuclear pore, chromatin location, and spindle-assembly wording should be interpreted
through the specific CHMP7 role in nuclear membrane reassembly and nuclear-envelope sealing
proposed_replacement_terms:
- id: GO:0005635
label: nuclear envelope
- term:
id: GO:0031468
label: nuclear membrane reassembly
evidence_type: TAS
original_reference_id: PMID:28242692
qualifier: involved_in
review:
summary: 'Supported core CHMP7 nuclear-envelope function: nuclear membrane reassembly.'
action: ACCEPT
reason: CHMP7 is recruited by LEMD2/LEM2 to the reforming nuclear envelope and recruits downstream ESCRT-III factors for
nuclear membrane closure/sealing.
supported_by:
- reference_id: PMID:26040712
supporting_text: ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
- reference_id: PMID:26040712
supporting_text: coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection
sites
- reference_id: PMID:28242692
supporting_text: CHMP7 and LEM2 enrich at the same region of the chromatin disk periphery
- reference_id: PMID:28242692
supporting_text: CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: UniProt:Q8WUX9
supporting_text: required to recruit the ESCRT-III complex to the nuclear envelope (NE) during late anaphase
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III
factors to the nuclear envelope for nuclear membrane closure
- term:
id: GO:0071168
label: protein localization to chromatin
evidence_type: IMP
original_reference_id: PMID:28242692
qualifier: involved_in
review:
summary: 'Supported CHMP7-dependent recruitment of ESCRT factors to chromatin disks/reforming NE: protein localization
to chromatin.'
action: ACCEPT
reason: CHMP7-dependent recruitment of IST1/CHMP8 and CHMP2A to chromatin disks is part of its nuclear-envelope ESCRT
recruitment function.
supported_by:
- reference_id: PMID:28242692
supporting_text: CHMP7 and LEM2 enrich at the same region of the chromatin disk periphery
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: protein localization to chromatin / chromatin disk periphery where this represents LEMD2-dependent
recruitment of CHMP7 and downstream ESCRT factors to the reforming nuclear envelope
- term:
id: GO:0000815
label: ESCRT III complex
evidence_type: NAS
original_reference_id: PMID:28242692
qualifier: part_of
review:
summary: 'Supported CHMP7 ESCRT-III-associated complex annotation: ESCRT III complex.'
action: ACCEPT
reason: CHMP7 is an ESCRT-III-like factor that recruits and associates with downstream ESCRT-III components, especially
at the reforming nuclear envelope.
supported_by:
- reference_id: PMID:26040712
supporting_text: ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: PMID:16856878
supporting_text: CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting
pathway
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: CHMP7 is an ESCRT-III-like / ESCRT-II-III hybrid protein with two literature-supported contexts
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:28242692
qualifier: enables
review:
summary: 'Generic protein binding is over-annotated for CHMP7: protein binding.'
action: MARK_AS_OVER_ANNOTATED
reason: The meaningful interactions are CHMP7-LEMD2 and CHMP7-CHMP4B; GO:0005515 is too generic to represent CHMP7 function.
supported_by:
- reference_id: PMID:16856878
supporting_text: positive interaction between the C-terminal half of CHMP7 and CHMP4b
- reference_id: PMID:28242692
supporting_text: CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: The meaningful molecular interactions are CHMP7-LEMD2 and CHMP7-CHMP4B, not undifferentiated protein
binding.
- term:
id: GO:0000815
label: ESCRT III complex
evidence_type: IDA
original_reference_id: PMID:26040712
qualifier: part_of
review:
summary: 'Supported CHMP7 ESCRT-III-associated complex annotation: ESCRT III complex.'
action: ACCEPT
reason: CHMP7 is an ESCRT-III-like factor that recruits and associates with downstream ESCRT-III components, especially
at the reforming nuclear envelope.
supported_by:
- reference_id: PMID:26040712
supporting_text: ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: PMID:16856878
supporting_text: CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting
pathway
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: CHMP7 is an ESCRT-III-like / ESCRT-II-III hybrid protein with two literature-supported contexts
- term:
id: GO:0005635
label: nuclear envelope
evidence_type: IDA
original_reference_id: PMID:26040712
qualifier: located_in
review:
summary: 'Supported core CHMP7 nuclear-envelope function: nuclear envelope.'
action: ACCEPT
reason: CHMP7 is recruited by LEMD2/LEM2 to the reforming nuclear envelope and recruits downstream ESCRT-III factors for
nuclear membrane closure/sealing.
supported_by:
- reference_id: PMID:26040712
supporting_text: ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
- reference_id: PMID:26040712
supporting_text: coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection
sites
- reference_id: PMID:28242692
supporting_text: CHMP7 and LEM2 enrich at the same region of the chromatin disk periphery
- reference_id: PMID:28242692
supporting_text: CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: UniProt:Q8WUX9
supporting_text: required to recruit the ESCRT-III complex to the nuclear envelope (NE) during late anaphase
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III
factors to the nuclear envelope for nuclear membrane closure
- term:
id: GO:0010458
label: exit from mitosis
evidence_type: IMP
original_reference_id: PMID:26040712
qualifier: involved_in
review:
summary: 'The cell-cycle/spindle wording is too broad for CHMP7: exit from mitosis.'
action: MODIFY
reason: CHMP7 contributes specifically to nuclear membrane reassembly and NE sealing during mitotic exit rather than to
broad mitotic progression or spindle assembly.
supported_by:
- reference_id: PMID:26040712
supporting_text: coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection
sites
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: exit from mitosis, nuclear pore, chromatin location, and spindle-assembly wording should be interpreted
through the specific CHMP7 role in nuclear membrane reassembly and nuclear-envelope sealing
proposed_replacement_terms:
- id: GO:0031468
label: nuclear membrane reassembly
- term:
id: GO:0031468
label: nuclear membrane reassembly
evidence_type: IMP
original_reference_id: PMID:26040712
qualifier: involved_in
review:
summary: 'Supported core CHMP7 nuclear-envelope function: nuclear membrane reassembly.'
action: ACCEPT
reason: CHMP7 is recruited by LEMD2/LEM2 to the reforming nuclear envelope and recruits downstream ESCRT-III factors for
nuclear membrane closure/sealing.
supported_by:
- reference_id: PMID:26040712
supporting_text: ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
- reference_id: PMID:26040712
supporting_text: coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection
sites
- reference_id: PMID:28242692
supporting_text: CHMP7 and LEM2 enrich at the same region of the chromatin disk periphery
- reference_id: PMID:28242692
supporting_text: CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: UniProt:Q8WUX9
supporting_text: required to recruit the ESCRT-III complex to the nuclear envelope (NE) during late anaphase
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III
factors to the nuclear envelope for nuclear membrane closure
- term:
id: GO:0036258
label: multivesicular body assembly
evidence_type: NAS
original_reference_id: PMID:20588296
qualifier: involved_in
review:
summary: 'Supported but secondary CHMP7 endosomal/MVB ESCRT context: multivesicular body assembly.'
action: KEEP_AS_NON_CORE
reason: CHMP7 has a reported endosomal-sorting phenotype and CHMP4B association, but its strongest CHMP7-specific mechanism
is LEMD2-dependent ESCRT recruitment to the reforming nuclear envelope.
supported_by:
- reference_id: PMID:16856878
supporting_text: CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting
pathway
- reference_id: PMID:16856878
supporting_text: positive interaction between the C-terminal half of CHMP7 and CHMP4b
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is
nuclear-envelope ESCRT recruitment.
- term:
id: GO:0039702
label: viral budding via host ESCRT complex
evidence_type: NAS
original_reference_id: PMID:20588296
qualifier: involved_in
review:
summary: 'Over-annotated CHMP7 viral-budding term: viral budding via host ESCRT complex.'
action: MARK_AS_OVER_ANNOTATED
reason: The CHMP7 viral evidence is a dominant-negative overexpression effect on virus-like particle release, not an endogenous
core CHMP7 viral-budding function.
supported_by:
- reference_id: PMID:16856878
supporting_text: dominant-negative effect of overexpressed GFP-CHMP7
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: The direct evidence is dominant-negative overexpression affecting virus-like particle release, not
a demonstrated endogenous core viral-budding function.
- term:
id: GO:1904903
label: ESCRT III complex disassembly
evidence_type: NAS
original_reference_id: PMID:20588296
qualifier: involved_in
review:
summary: 'Supported but secondary CHMP7 endosomal/MVB ESCRT context: ESCRT III complex disassembly.'
action: KEEP_AS_NON_CORE
reason: CHMP7 has a reported endosomal-sorting phenotype and CHMP4B association, but its strongest CHMP7-specific mechanism
is LEMD2-dependent ESCRT recruitment to the reforming nuclear envelope.
supported_by:
- reference_id: PMID:16856878
supporting_text: CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting
pathway
- reference_id: PMID:16856878
supporting_text: positive interaction between the C-terminal half of CHMP7 and CHMP4b
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is
nuclear-envelope ESCRT recruitment.
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-3159232
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: cytosol.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-917693
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: cytosol.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-917700
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: cytosol.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9668335
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: cytosol.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9668389
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: cytosol.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9668395
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: cytosol.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9668398
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: cytosol.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9668405
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: cytosol.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9668415
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: cytosol.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9668419
qualifier: located_in
review:
summary: 'Plausible secondary ESCRT pathway or broad location context for CHMP7: cytosol.'
action: KEEP_AS_NON_CORE
reason: This annotation is compatible with broader ESCRT biology or observed broad localization, but it is not as specific
or central as CHMP7-dependent nuclear-envelope ESCRT recruitment and sealing.
supported_by:
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: Keep autophagy/amphisome/lysosomal membrane, plasma membrane repair, cytoplasm/cytosol/nucleoplasm,
kinetochore/midbody, and broad ESCRT cell-cycle annotations as non-core pathway contexts
- term:
id: GO:0000815
label: ESCRT III complex
evidence_type: IDA
original_reference_id: PMID:16856878
qualifier: part_of
review:
summary: 'Supported CHMP7 ESCRT-III-associated complex annotation: ESCRT III complex.'
action: ACCEPT
reason: CHMP7 is an ESCRT-III-like factor that recruits and associates with downstream ESCRT-III components, especially
at the reforming nuclear envelope.
supported_by:
- reference_id: PMID:26040712
supporting_text: ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: PMID:16856878
supporting_text: CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting
pathway
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: CHMP7 is an ESCRT-III-like / ESCRT-II-III hybrid protein with two literature-supported contexts
- term:
id: GO:0045324
label: late endosome to vacuole transport
evidence_type: IMP
original_reference_id: PMID:16856878
qualifier: involved_in
review:
summary: The endosomal-sorting evidence is real, but late endosome to vacuole transport should be expressed with human
MVB/endolysosomal terms.
action: MODIFY
reason: CHMP7 has an older supported endosomal-sorting phenotype, but vacuole wording is less appropriate for human curation
than MVB sorting / late endosome-to-lysosome transport.
supported_by:
- reference_id: PMID:16856878
supporting_text: CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting
pathway
- reference_id: PMID:16856878
supporting_text: positive interaction between the C-terminal half of CHMP7 and CHMP4b
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: PMID:16856878 supports an endosomal-sorting phenotype, but the stronger CHMP7-specific mechanism is
nuclear-envelope ESCRT recruitment.
proposed_replacement_terms:
- id: GO:0071985
label: multivesicular body sorting pathway
- id: GO:1902774
label: late endosome to lysosome transport
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO terms
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative
changes to GO terms applied by UniProt
findings: []
- id: GO_REF:0000052
title: Gene Ontology annotation based on curation of immunofluorescence data
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning models
findings: []
- id: PMID:16505166
title: Recycling of ESCRTs by the AAA-ATPase Vps4 is regulated by a conserved VSL region in Vta1.
findings: []
- id: PMID:16554368
title: The ESCRT-III subunit hVps24 is required for degradation but not silencing of the epidermal growth factor receptor.
findings: []
- id: PMID:16856878
title: CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting pathway.
findings: []
- id: PMID:17984323
title: Functional multivesicular bodies are required for autophagic clearance of protein aggregates associated with neurodegenerative
disease.
findings: []
- id: PMID:19234443
title: Membrane scission by the ESCRT-III complex.
findings: []
- id: PMID:20588296
title: 'Membrane budding and scission by the ESCRT machinery: it''s all in the neck.'
findings: []
- id: PMID:20616062
title: Human ESCRT-III and VPS4 proteins are required for centrosome and spindle maintenance.
findings: []
- id: PMID:24482116
title: ESCRT machinery is required for plasma membrane repair.
findings: []
- id: PMID:24878737
title: Structure of cellular ESCRT-III spirals and their relationship to HIV budding.
findings: []
- id: PMID:26040712
title: Spastin and ESCRT-III coordinate mitotic spindle disassembly and nuclear envelope sealing.
findings: []
- id: PMID:26040713
title: ESCRT-III controls nuclear envelope reformation.
findings: []
- id: PMID:28242692
title: LEM2 recruits CHMP7 for ESCRT-mediated nuclear envelope closure in fission yeast and human cells.
findings: []
- id: PMID:30194290
title: Interrogating the protein interactomes of RAS isoforms identifies PIP5K1A as a KRAS-specific vulnerability.
findings: []
- id: PMID:32814053
title: Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation
in Affected Brains.
findings: []
- id: PMID:36107470
title: Comprehensive analysis of the human ESCRT-III-MIT domain interactome reveals new cofactors for cytokinetic abscission.
findings: []
- id: Reactome:R-HSA-3159232
title: Recruitment Of HIV Virion Budding Machinery
findings: []
- id: Reactome:R-HSA-917693
title: ESCRT Disassembly
findings: []
- id: Reactome:R-HSA-917700
title: MVB Vesicle Formation
findings: []
- id: Reactome:R-HSA-9668335
title: CHMP7 binds LEMD2
findings: []
- id: Reactome:R-HSA-9668389
title: VPS4 binds ESCRT-III assemblies at nuclear envelope (NE) fenestrations
findings: []
- id: Reactome:R-HSA-9668395
title: CHMP7 binds CC2D1B
findings: []
- id: Reactome:R-HSA-9668398
title: CHMP7 binds CHMP4B, which recruits other subunits of the ESCRT-III complex
findings: []
- id: Reactome:R-HSA-9668405
title: SPAST (spastin) binds the IST1 subunit of ESCRT-III at the sites of microtubule attachment to chromatin
findings: []
- id: Reactome:R-HSA-9668415
title: VPS4 mediates disassembly of ESCRTIII subunits to promote sealing of holes in the nuclear envelope
findings: []
- id: Reactome:R-HSA-9668419
title: SPAST (spastin) mediates the severing of microtubules at chromosome attachment sites
findings: []
- id: UniProt:Q8WUX9
title: UniProtKB entry Q8WUX9 (CHMP7)
findings:
- statement: CHMP7 recruits ESCRT-III to the nuclear envelope during late anaphase and is recruited there by LEMD2.
supporting_text: required to recruit the ESCRT-III complex to the nuclear envelope (NE) during late anaphase
- id: file:human/CHMP7/CHMP7-notes.md
title: CHMP7 review notes
findings:
- statement: CHMP7 core function is LEMD2-dependent recruitment of ESCRT factors to the reforming nuclear envelope; endosomal
sorting is supported but secondary.
supporting_text: the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III
factors to the nuclear envelope for nuclear membrane closure
core_functions:
- description: CHMP7 is a LEMD2/LEM2-recruited ESCRT-III-like adaptor that localizes to reforming nuclear-envelope/chromatin-disk
sites during late anaphase. It recruits downstream ESCRT-III factors to nuclear-envelope holes, supporting membrane closure/fission-like
sealing of the nuclear envelope and coordination with spindle microtubule disassembly.
in_complex:
id: GO:0000815
label: ESCRT III complex
directly_involved_in:
- id: GO:0031468
label: nuclear membrane reassembly
- id: GO:0071168
label: protein localization to chromatin
- id: GO:0090148
label: membrane fission
locations:
- id: GO:0005635
label: nuclear envelope
supported_by:
- reference_id: PMID:26040712
supporting_text: ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
- reference_id: PMID:26040712
supporting_text: coordinate nuclear envelope sealing and spindle disassembly at nuclear envelope-microtubule intersection
sites
- reference_id: PMID:28242692
supporting_text: CHMP7 and LEM2 enrich at the same region of the chromatin disk periphery
- reference_id: PMID:28242692
supporting_text: CHMP7 can bind directly to the C-terminal domain of LEM2 in vitro
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: UniProt:Q8WUX9
supporting_text: required to recruit the ESCRT-III complex to the nuclear envelope (NE) during late anaphase
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: the core function should emphasize LEMD2/LEM2-dependent recruitment of CHMP7 and downstream ESCRT-III
factors to the nuclear envelope for nuclear membrane closure
- reference_id: PMID:26040712
supporting_text: ESCRT-III-like protein CHMP7 to sites where the reforming nuclear envelope engulfs spindle microtubules
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: PMID:16856878
supporting_text: CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting
pathway
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: CHMP7 is an ESCRT-III-like / ESCRT-II-III hybrid protein with two literature-supported contexts
- reference_id: PMID:28242692
supporting_text: CHMP7 and LEM2 enrich at the same region of the chromatin disk periphery
- reference_id: PMID:28242692
supporting_text: recruits Cmp7p/CHMP7 and downstream ESCRT factors to the nuclear envelope
- reference_id: file:human/CHMP7/CHMP7-notes.md
supporting_text: protein localization to chromatin / chromatin disk periphery where this represents LEMD2-dependent recruitment
of CHMP7 and downstream ESCRT factors to the reforming nuclear envelope
proposed_new_terms: []
suggested_questions:
- question: Can endogenous CHMP7 rescue assays separate LEMD2 binding, CHMP4B recruitment, and VPS4-dependent ESCRT turnover
during nuclear-envelope sealing?
- question: Should CHMP7 endosomal-sorting annotations remain non-core unless supported by endogenous depletion/rescue assays
distinct from dominant-negative overexpression phenotypes?
- question: Is there a more specific GO process term needed for ESCRT-mediated nuclear-envelope hole sealing during anaphase?
suggested_experiments:
- description: Rescue CHMP7-depleted cells with wild-type CHMP7 and mutants separating LEMD2 binding, CHMP4B binding, and
ESCRT-III recruitment while measuring CHMP2A/IST1 recruitment, NE sealing reporters, and post-mitotic nuclear leakage.
hypothesis: CHMP7 nuclear-envelope sealing will require LEMD2-dependent recruitment and downstream ESCRT-III assembly more
directly than its endosomal-sorting phenotype.
- description: Compare acute endogenous CHMP7 depletion/rescue in EGFR or ubiquitinated-cargo MVB sorting assays versus nuclear-envelope
sealing assays under matched expression levels.
hypothesis: The nuclear-envelope phenotype will be the clearest CHMP7-specific core function, whereas endosomal sorting
will be weaker or context-dependent.
- description: Test whether CHMP7 perturbation affects virus-like particle release only through overexpression/dominant-negative
ESCRT disruption or through a reproducible endogenous requirement.
hypothesis: Viral-budding effects will reflect pathway-level ESCRT perturbation rather than a direct core CHMP7 function.