CHRNG encodes the gamma subunit of the fetal skeletal-muscle nicotinic acetylcholine receptor. Gamma assembles with two alpha1 subunits, beta1 and delta to form a postsynaptic cation channel that couples acetylcholine release to muscle excitation and prenatal movement. Gamma contributes to the pore, gating architecture and the complementary side of an acetylcholine-binding interface; fetal receptors have greater agonist sensitivity and longer openings than adult receptors in which epsilon replaces gamma. The human gamma-containing receptor conducts calcium as a small fraction of its inward current. Biallelic loss-of-function variants cause fetal akinesia and lethal or nonlethal multiple pterygium phenotypes. The developmental replacement by epsilon explains why surviving individuals may lack ongoing postnatal myasthenia. Functional effects of the alternative product replacing residues 117β169 with lysine remain unresolved.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
| GO:0003009 skeletal muscle contraction | IBA GO_REF:0000033 | ACCEPT | Summary: Retain skeletal-muscle excitation that initiates contraction. Reason: PMID:16527851 reconstitutes wild-type human alpha1/beta1/gamma/delta receptors in rat GH4C1 cells and independently measures fetal receptor current in primary human myotubes. Gamma is a component of the conducting heteropentamer, not an autonomous channel. The assembled receptor performs the acetylcholine-triggered electrical step of neuromuscular excitation. Human CHRNG loss-of-function families in PMID:16826520 and PMID:16826531 have reduced prenatal movement. This does not assign actomyosin chemistry or an autonomous contractile motor to gamma. The rat RGD:2354 identity is authenticated as Chrng/P18916. Propagation Review Root cause: NO FAILURE CORE Sources checked: PANTHER:PTN002707668 SUPPORTS TRANSFER The authenticated current annotation records this curated PAINT assertion. Qualified support rests on that curated propagation and independently verified target-containing receptor experiments, not an independent reconstruction of the historical IBD placement, tree or MSA. Selected extant donor records are contextual corroboration; neither donor number nor target self-inclusion is treated as a failure. Supporting Evidence: GO_REF:0000033 file:human/CHRNG/CHRNG-source-evidence.json |
| GO:0004888 transmembrane signaling receptor activity | IEA GO_REF:0000002 | MODIFY | Summary: Specify acetylcholine-gated cation channel activity. Reason: The original InterPro inference and enables qualifier are preserved. Human gamma-containing receptor measurements in PMID:16527851 establish ligand-gated cation-channel function. GO:0022848 is not an is_a descendant of GO:0004888 in the retrieved ontology: this is a lateral, mechanism-based replacement of a broad receptor assertion, not a claimed typed narrowing. The GO:0015464 usage comment directs ionotropic nicotinic receptors to GO:0022848. Gamma contributes to the assembled receptor; the core expresses that relation without altering the historical qualifier. Proposed replacements: acetylcholine-gated monoatomic cation-selective channel activity Supporting Evidence: GO_REF:0000002 file:human/CHRNG/CHRNG-source-evidence.json |
| GO:0005216 monoatomic ion channel activity | IEA GO_REF:0000002 | MODIFY | Summary: Specify acetylcholine-gated cation channel activity. Reason: Official InterPro/rule source identity is retained, with direct target-containing receptor experiments providing specificity. PMID:16527851 reconstitutes wild-type human alpha1/beta1/gamma/delta receptors in rat GH4C1 cells and independently measures fetal receptor current in primary human myotubes. Gamma is a component of the conducting heteropentamer, not an autonomous channel. GO:0022848 states the ligand and cation-selective channel mechanism; the official GO:0015464 usage comment directs ionotropic nicotinic receptors to this term. Historical enables/contributes_to qualifiers are preserved exactly; the core uses contributes_to for the subunit. Proposed replacements: acetylcholine-gated monoatomic cation-selective channel activity Supporting Evidence: GO_REF:0000002 file:human/CHRNG/CHRNG-source-evidence.json |
| GO:0005230 extracellular ligand-gated monoatomic ion channel activity | IEA GO_REF:0000002 | MODIFY | Summary: Specify acetylcholine-gated cation channel activity. Reason: Official InterPro/rule source identity is retained, with direct target-containing receptor experiments providing specificity. PMID:16527851 reconstitutes wild-type human alpha1/beta1/gamma/delta receptors in rat GH4C1 cells and independently measures fetal receptor current in primary human myotubes. Gamma is a component of the conducting heteropentamer, not an autonomous channel. GO:0022848 states the ligand and cation-selective channel mechanism; the official GO:0015464 usage comment directs ionotropic nicotinic receptors to this term. Historical enables/contributes_to qualifiers are preserved exactly; the core uses contributes_to for the subunit. Proposed replacements: acetylcholine-gated monoatomic cation-selective channel activity Supporting Evidence: GO_REF:0000002 file:human/CHRNG/CHRNG-source-evidence.json |
| GO:0005515 protein binding | IPI PMID:25416956 A proteome-scale map of the human interactome network. | REMOVE | Summary: Remove uninformative bare protein binding while preserving the measured interaction. Reason: 3 literal positive IntAct records join human CHRNG/P07510 and KRTAP10-7/P60409 to PMID:25416956. The pooling, array and validated two-hybrid records are consistent with the actual primary repeated pairwise verification and sequence-confirmation procedure. Dataset-level orthogonal tests are not claimed for this particular pair. The assay supports this pair at the same evidential strength as the KRT31 pair in this study. Current KRTAP10-7/-8/-9 annotations include GO:0045095 keratin filament, explicitly located_in by InterPro IEA; their documented function is a cysteine-rich interfilamentous matrix associated with hair keratins. That location is acknowledged, not rejected. Whether this accessory matrix role satisfies the protein-component class required by GO:0008092 is unresolved here, whereas KRT31 itself is an established filament-forming keratin. Retain the positive binding as non-core without categorically excluding KRTAPs from cytoskeletal association. Neither native muscle colocalization nor binding to an assembled filament is demonstrated. Current project protein-binding policy supersedes the historical non-core retention: remove only the uninformative GO:0005515 assertion. The positive assay and exact partner provenance remain accepted as observations; neither lack of a specific replacement nor lack of native colocalization makes the interaction false. |
| GO:0005515 protein binding | IPI PMID:25416956 A proteome-scale map of the human interactome network. | REMOVE | Summary: Remove uninformative bare protein binding while preserving the measured interaction. Reason: 3 literal positive IntAct records join human CHRNG/P07510 and KRTAP10-8/P60410 to PMID:25416956. The pooling, array and validated two-hybrid records are consistent with the actual primary repeated pairwise verification and sequence-confirmation procedure. Dataset-level orthogonal tests are not claimed for this particular pair. The assay supports this pair at the same evidential strength as the KRT31 pair in this study. Current KRTAP10-7/-8/-9 annotations include GO:0045095 keratin filament, explicitly located_in by InterPro IEA; their documented function is a cysteine-rich interfilamentous matrix associated with hair keratins. That location is acknowledged, not rejected. Whether this accessory matrix role satisfies the protein-component class required by GO:0008092 is unresolved here, whereas KRT31 itself is an established filament-forming keratin. Retain the positive binding as non-core without categorically excluding KRTAPs from cytoskeletal association. Neither native muscle colocalization nor binding to an assembled filament is demonstrated. Current project protein-binding policy supersedes the historical non-core retention: remove only the uninformative GO:0005515 assertion. The positive assay and exact partner provenance remain accepted as observations; neither lack of a specific replacement nor lack of native colocalization makes the interaction false. |
| GO:0005515 protein binding | IPI PMID:25416956 A proteome-scale map of the human interactome network. | REMOVE | Summary: Remove uninformative bare protein binding while preserving the measured interaction. Reason: 3 literal positive IntAct records join human CHRNG/P07510 and KRTAP10-9/P60411 to PMID:25416956. The pooling, array and validated two-hybrid records are consistent with the actual primary repeated pairwise verification and sequence-confirmation procedure. Dataset-level orthogonal tests are not claimed for this particular pair. The assay supports this pair at the same evidential strength as the KRT31 pair in this study. Current KRTAP10-7/-8/-9 annotations include GO:0045095 keratin filament, explicitly located_in by InterPro IEA; their documented function is a cysteine-rich interfilamentous matrix associated with hair keratins. That location is acknowledged, not rejected. Whether this accessory matrix role satisfies the protein-component class required by GO:0008092 is unresolved here, whereas KRT31 itself is an established filament-forming keratin. Retain the positive binding as non-core without categorically excluding KRTAPs from cytoskeletal association. Neither native muscle colocalization nor binding to an assembled filament is demonstrated. Current project protein-binding policy supersedes the historical non-core retention: remove only the uninformative GO:0005515 assertion. The positive assay and exact partner provenance remain accepted as observations; neither lack of a specific replacement nor lack of native colocalization makes the interaction false. |
| GO:0005515 protein binding | IPI PMID:25416956 A proteome-scale map of the human interactome network. | MODIFY | Summary: Specify the experimentally supported keratin-protein binding class. Reason: 3 literal positive IntAct records join human CHRNG/P07510 and KRT31/Q15323 to PMID:25416956. The pooling, array and validated two-hybrid records are consistent with the actual primary repeated pairwise verification and sequence-confirmation procedure. Dataset-level orthogonal tests are not claimed for this particular pair. KRT31/Q15323 is an authenticated type-I keratin with an intermediate-filament rod domain and structural-constituent annotation. It therefore satisfies the protein-component class in GO:0008092. The positive Y2H evidence has the same strength as that for the KRTAP partners; the different refinement rests on established partner class, not stronger interaction evidence. KRTAP filament-location annotations are acknowledged separately, but do not alone settle their accessory matrix classification. This is assay-only, non-core binding specificity: no native muscle encounter, assembled-filament binding or CHRNG cytoskeletal activity is inferred. Proposed replacements: cytoskeletal protein binding |
| GO:0005515 protein binding | IPI PMID:25416956 A proteome-scale map of the human interactome network. | REMOVE | Summary: Remove uninformative bare protein binding while preserving the measured interaction. Reason: 3 literal positive IntAct records join human CHRNG/P07510 and NOTCH2NLA/Q7Z3S9 to PMID:25416956. The pooling, array and validated two-hybrid records are consistent with the actual primary repeated pairwise verification and sequence-confirmation procedure. Dataset-level orthogonal tests are not claimed for this particular pair. NOTCH2NLA is a secreted Notch-pathway modulator, not the transmembrane NOTCH2 receptor itself; the pair does not establish receptor binding or a CHRNG Notch-signaling role. Retain the supported generic interaction as non-core under the campaign convention, without a native physiological encounter or new mechanism claim. Current project protein-binding policy supersedes the historical non-core retention: remove only the uninformative GO:0005515 assertion. The positive assay and exact partner provenance remain accepted as observations; neither lack of a specific replacement nor lack of native colocalization makes the interaction false. |
| GO:0005515 protein binding | IPI PMID:29892012 An interactome perturbation framework prioritizes damaging m... | REMOVE | Summary: Remove uninformative bare protein binding while preserving the measured interaction. Reason: One literal positive IntAct record joins human CHRNG/P07510 and KRTAP10-7/P60409 to PMID:29892012. The actual Methods test WT and variant ORFs using GAL4 fusions in yeast, with empty-vector autoactivation controls. The exact record includes a CHRNG position-448 mutation with no effect on the interaction; retain this tested variant context rather than describing a native membrane complex. The assay supports this pair at the same evidential strength as the KRT31 pair in this study. Current KRTAP10-7/-8/-9 annotations include GO:0045095 keratin filament, explicitly located_in by InterPro IEA; their documented function is a cysteine-rich interfilamentous matrix associated with hair keratins. That location is acknowledged, not rejected. Whether this accessory matrix role satisfies the protein-component class required by GO:0008092 is unresolved here, whereas KRT31 itself is an established filament-forming keratin. Retain the positive binding as non-core without categorically excluding KRTAPs from cytoskeletal association. Neither native muscle colocalization nor binding to an assembled filament is demonstrated. Current project protein-binding policy supersedes the historical non-core retention: remove only the uninformative GO:0005515 assertion. The positive assay and exact partner provenance remain accepted as observations; neither lack of a specific replacement nor lack of native colocalization makes the interaction false. |
| GO:0005515 protein binding | IPI PMID:29892012 An interactome perturbation framework prioritizes damaging m... | REMOVE | Summary: Remove uninformative bare protein binding while preserving the measured interaction. Reason: One literal positive IntAct record joins human CHRNG/P07510 and KRTAP10-8/P60410 to PMID:29892012. The actual Methods test WT and variant ORFs using GAL4 fusions in yeast, with empty-vector autoactivation controls. The exact record includes a CHRNG position-448 mutation with no effect on the interaction; retain this tested variant context rather than describing a native membrane complex. The assay supports this pair at the same evidential strength as the KRT31 pair in this study. Current KRTAP10-7/-8/-9 annotations include GO:0045095 keratin filament, explicitly located_in by InterPro IEA; their documented function is a cysteine-rich interfilamentous matrix associated with hair keratins. That location is acknowledged, not rejected. Whether this accessory matrix role satisfies the protein-component class required by GO:0008092 is unresolved here, whereas KRT31 itself is an established filament-forming keratin. Retain the positive binding as non-core without categorically excluding KRTAPs from cytoskeletal association. Neither native muscle colocalization nor binding to an assembled filament is demonstrated. Current project protein-binding policy supersedes the historical non-core retention: remove only the uninformative GO:0005515 assertion. The positive assay and exact partner provenance remain accepted as observations; neither lack of a specific replacement nor lack of native colocalization makes the interaction false. |
| GO:0005515 protein binding | IPI PMID:29892012 An interactome perturbation framework prioritizes damaging m... | REMOVE | Summary: Remove uninformative bare protein binding while preserving the measured interaction. Reason: One literal positive IntAct record joins human CHRNG/P07510 and KRTAP10-9/P60411 to PMID:29892012. The actual Methods test WT and variant ORFs using GAL4 fusions in yeast, with empty-vector autoactivation controls. The exact record includes a CHRNG position-448 mutation with no effect on the interaction; retain this tested variant context rather than describing a native membrane complex. The assay supports this pair at the same evidential strength as the KRT31 pair in this study. Current KRTAP10-7/-8/-9 annotations include GO:0045095 keratin filament, explicitly located_in by InterPro IEA; their documented function is a cysteine-rich interfilamentous matrix associated with hair keratins. That location is acknowledged, not rejected. Whether this accessory matrix role satisfies the protein-component class required by GO:0008092 is unresolved here, whereas KRT31 itself is an established filament-forming keratin. Retain the positive binding as non-core without categorically excluding KRTAPs from cytoskeletal association. Neither native muscle colocalization nor binding to an assembled filament is demonstrated. Current project protein-binding policy supersedes the historical non-core retention: remove only the uninformative GO:0005515 assertion. The positive assay and exact partner provenance remain accepted as observations; neither lack of a specific replacement nor lack of native colocalization makes the interaction false. |
| GO:0005515 protein binding | IPI PMID:29892012 An interactome perturbation framework prioritizes damaging m... | MODIFY | Summary: Specify the experimentally supported keratin-protein binding class. Reason: One literal positive IntAct record joins human CHRNG/P07510 and KRT31/Q15323 to PMID:29892012. The actual Methods test WT and variant ORFs using GAL4 fusions in yeast, with empty-vector autoactivation controls. The exact record includes a CHRNG position-448 mutation with no effect on the interaction; retain this tested variant context rather than describing a native membrane complex. KRT31/Q15323 is an authenticated type-I keratin with an intermediate-filament rod domain and structural-constituent annotation. It therefore satisfies the protein-component class in GO:0008092. The positive Y2H evidence has the same strength as that for the KRTAP partners; the different refinement rests on established partner class, not stronger interaction evidence. KRTAP filament-location annotations are acknowledged separately, but do not alone settle their accessory matrix classification. This is assay-only, non-core binding specificity: no native muscle encounter, assembled-filament binding or CHRNG cytoskeletal activity is inferred. Proposed replacements: cytoskeletal protein binding |
| GO:0005515 protein binding | IPI PMID:29892012 An interactome perturbation framework prioritizes damaging m... | REMOVE | Summary: Remove uninformative bare protein binding while preserving the measured interaction. Reason: 1 literal positive IntAct record join human CHRNG/P07510 and NOTCH2NLA/Q7Z3S9 to PMID:29892012. The actual Methods test WT and variant ORFs using GAL4 fusions in yeast, with empty-vector autoactivation controls. The exact record includes a CHRNG position-448 mutation with no effect on the interaction; retain this tested variant context rather than describing a native membrane complex. NOTCH2NLA is a secreted Notch-pathway modulator, not the transmembrane NOTCH2 receptor itself; the pair does not establish receptor binding or a CHRNG Notch-signaling role. Retain the supported generic interaction as non-core under the campaign convention, without a native physiological encounter or new mechanism claim. Current project protein-binding policy supersedes the historical non-core retention: remove only the uninformative GO:0005515 assertion. The positive assay and exact partner provenance remain accepted as observations; neither lack of a specific replacement nor lack of native colocalization makes the interaction false. |
| GO:0005515 protein binding | IPI PMID:31515488 Extensive disruption of protein interactions by genetic vari... | REMOVE | Summary: Remove uninformative bare protein binding while preserving the measured interaction. Reason: 1 literal positive IntAct record join human CHRNG/P07510 and NOTCH2NLA/Q7Z3S9 to PMID:31515488. The actual Methods compare WT/variant GAL4 fusions with autoactivation controls and repeated growth phenotypes. The exact NOTCH2NLA participant carries position-74 and position-115 mutation-with-no-effect features; these are partner variants, not CHRNG changes. NOTCH2NLA is a secreted Notch-pathway modulator, not the transmembrane NOTCH2 receptor itself; the pair does not establish receptor binding or a CHRNG Notch-signaling role. Retain the supported generic interaction as non-core under the campaign convention, without a native physiological encounter or new mechanism claim. Current project protein-binding policy supersedes the historical non-core retention: remove only the uninformative GO:0005515 assertion. The positive assay and exact partner provenance remain accepted as observations; neither lack of a specific replacement nor lack of native colocalization makes the interaction false. |
| GO:0005886 plasma membrane | IBA GO_REF:0000033 | ACCEPT | Summary: Retain plasma-membrane localization and activity. Reason: Human gamma-containing receptor currents measured in rat GH4C1 expression cells and primary human myotubes support the plasma-membrane compartment (PMID:16527851). Mouse-subunit reconstitution in human HEK cells independently demonstrates assembled receptor surface delivery (PMID:16826520); those constructs are not human merely because of the host. The original localization or active-in relation is retained. Propagation Review Root cause: NO FAILURE CORE Sources checked: PANTHER:PTN001054635 SUPPORTS TRANSFER The authenticated current annotation records this curated PAINT assertion. Qualified support rests on that curated propagation and independently verified target-containing receptor experiments, not an independent reconstruction of the historical IBD placement, tree or MSA. Selected extant donor records are contextual corroboration; neither donor number nor target self-inclusion is treated as a failure. Supporting Evidence: GO_REF:0000033 file:human/CHRNG/CHRNG-source-evidence.json |
| GO:0005886 plasma membrane | IEA GO_REF:0000044 | ACCEPT | Summary: Retain plasma-membrane localization and activity. Reason: Human gamma-containing receptor currents measured in rat GH4C1 expression cells and primary human myotubes support the plasma-membrane compartment (PMID:16527851). Mouse-subunit reconstitution in human HEK cells independently demonstrates assembled receptor surface delivery (PMID:16826520); those constructs are not human merely because of the host. The original localization or active-in relation is retained. Supporting Evidence: GO_REF:0000044 file:human/CHRNG/CHRNG-source-evidence.json |
| GO:0005886 plasma membrane | TAS PMID:3967651 Cloning and sequence analysis of human genomic DNA encoding ... | ACCEPT | Summary: Retain plasma-membrane localization and activity. Reason: The original PMID:3967651 abstract establishes human genomic sequence and predicted four-pass topology; its full body remains unrecovered. Independent human receptor currents in PMID:16527851 support plasma-membrane activity, and mouse-subunit surface-delivery experiments in human HEK cells provide corroboration (PMID:16826520). These later assays are not attributed to the cloning paper. |
| GO:0005886 plasma membrane | TAS Reactome:R-HSA-622325 | ACCEPT | Summary: Retain the explicit target plasma-membrane compartment. Reason: The exact Reactome event reaches physical entity 507843, CHRNG/P07510 residues 23β517, annotated to plasma membrane. Its source chain passes through the delta/epsilon/gamma set 532618 inside modeled alpha3-beta4 complex 532621 and highly sodium-permeable receptor set 629576. That source composition is not the established fetal muscle alpha1/beta1/gamma/delta stoichiometry and is not silently reinterpreted. The compartment is independently corroborated by human fetal receptor reconstitution; no neuronal alpha3-beta4 membership is inferred for CHRNG. Supporting Evidence: Reactome:R-HSA-622325 file:human/CHRNG/CHRNG-source-evidence.json |
| GO:0005886 plasma membrane | TAS Reactome:R-HSA-629588 | ACCEPT | Summary: Retain the explicit target plasma-membrane compartment. Reason: The exact Reactome event reaches physical entity 507843, CHRNG/P07510 residues 23β517, annotated to plasma membrane. Its source chain passes through the delta/epsilon/gamma set 532618 inside modeled alpha3-beta4 complex 532621 and highly sodium-permeable receptor set 629576. That source composition is not the established fetal muscle alpha1/beta1/gamma/delta stoichiometry and is not silently reinterpreted. The compartment is independently corroborated by human fetal receptor reconstitution; no neuronal alpha3-beta4 membership is inferred for CHRNG. Supporting Evidence: Reactome:R-HSA-629588 file:human/CHRNG/CHRNG-source-evidence.json |
| GO:0005892 acetylcholine-gated channel complex | IBA GO_REF:0000033 | ACCEPT | Summary: Retain fetal acetylcholine-gated channel complex membership. Reason: PMID:16527851 reconstitutes wild-type human alpha1/beta1/gamma/delta receptors in rat GH4C1 cells and independently measures fetal receptor current in primary human myotubes. Gamma is a component of the conducting heteropentamer, not an autonomous channel. The fetal receptor contains two alpha1 subunits and one beta1, gamma and delta. PMID:39085615 resolves native bovine fetal receptors, including gamma pore and complementary ligand-site contributions; this is ortholog structural evidence, not a human structure or a test of both human products. The PAINT assertion concerns complex membership, not a gamma-only channel or every product. Propagation Review Root cause: NO FAILURE CORE Sources checked: PANTHER:PTN000435923 SUPPORTS TRANSFER The authenticated current annotation records this curated PAINT assertion. Qualified support rests on that curated propagation and independently verified target-containing receptor experiments, not an independent reconstruction of the historical IBD placement, tree or MSA. Selected extant donor records are contextual corroboration; neither donor number nor target self-inclusion is treated as a failure. Supporting Evidence: GO_REF:0000033 file:human/CHRNG/CHRNG-source-evidence.json |
| GO:0006811 monoatomic ion transport | IEA GO_REF:0000002 | MODIFY | Summary: Specify monoatomic cation transmembrane transport. Reason: PMID:16527851 reconstitutes wild-type human alpha1/beta1/gamma/delta receptors in rat GH4C1 cells and independently measures fetal receptor current in primary human myotubes. Gamma is a component of the conducting heteropentamer, not an autonomous channel. The measured inward current and native ortholog pore establish cation passage across the membrane. GO:0098655 preserves both ion charge and the membrane step more precisely than the original broad term. PMID:39085615 resolves native bovine fetal receptors, including gamma pore and complementary ligand-site contributions; this is ortholog structural evidence, not a human structure or a test of both human products. Proposed replacements: monoatomic cation transmembrane transport Supporting Evidence: GO_REF:0000002 file:human/CHRNG/CHRNG-source-evidence.json |
| GO:0006816 calcium ion transport | IBA GO_REF:0000033 | ACCEPT | Summary: Retain calcium transport by the gamma-containing fetal receptor. Reason: PMID:16527851 reconstitutes wild-type human alpha1/beta1/gamma/delta receptors in rat GH4C1 cells and independently measures fetal receptor current in primary human myotubes. Gamma is a component of the conducting heteropentamer, not an autonomous channel. Simultaneous current/fura-2 measurements give about 3% fractional calcium current for WT gamma receptors and 2.7 Β± 0.6% in human myotubes; controls exclude intracellular-store release and responses in untransfected cells. Adult epsilon-containing receptors have higher fractional calcium permeability, so this is not gamma-specific calcium selectivity. These target-containing experiments corroborate the IBA despite its neuronal descendant premises. Propagation Review Root cause: NO FAILURE CORE Sources checked: PANTHER:PTN000434994 SUPPORTS TRANSFER The authenticated current annotation records this curated PAINT assertion. Qualified support rests on that curated propagation and independently verified target-containing receptor experiments, not an independent reconstruction of the historical IBD placement, tree or MSA. Selected extant donor records are contextual corroboration; neither donor number nor target self-inclusion is treated as a failure. Supporting Evidence: GO_REF:0000033 PMID:16527851 the wild-type Ξ³-AChR, the P f was around 3% file:human/CHRNG/CHRNG-source-evidence.json |
| GO:0006936 muscle contraction | IEA GO_REF:0000117 | MODIFY | Summary: Specify the skeletal-muscle contraction context. Reason: PMID:16527851 reconstitutes wild-type human alpha1/beta1/gamma/delta receptors in rat GH4C1 cells and independently measures fetal receptor current in primary human myotubes. Gamma is a component of the conducting heteropentamer, not an autonomous channel. The performed role is receptor excitation that triggers skeletal-muscle contraction. The ARBA source is preserved, while independently measured target-containing receptor activity supplies the biological precision. Proposed replacements: skeletal muscle contraction Supporting Evidence: GO_REF:0000117 file:human/CHRNG/CHRNG-source-evidence.json |
| GO:0006936 muscle contraction | TAS PMID:8040310 Association of neonatal myasthenia gravis with antibodies ag... | MODIFY | Summary: Specify the skeletal-muscle contraction context. Reason: PMID:16527851 reconstitutes wild-type human alpha1/beta1/gamma/delta receptors in rat GH4C1 cells and independently measures fetal receptor current in primary human myotubes. Gamma is a component of the conducting heteropentamer, not an autonomous channel. The performed role is receptor excitation that triggers skeletal-muscle contraction. The actual PMID:8040310 full paper compares antibody recognition of human fetal and adult muscle receptor preparations with neonatal myasthenia; it does not isolate gamma-specific antibody epitopes or directly measure contractile force. This TAS context is strengthened by independent receptor physiology and human CHRNG loss-of-function evidence. Proposed replacements: skeletal muscle contraction |
| GO:0007154 cell communication | IEA GO_REF:0000117 | MODIFY | Summary: Specify acetylcholine receptor signaling. Reason: PMID:16527851 reconstitutes wild-type human alpha1/beta1/gamma/delta receptors in rat GH4C1 cells and independently measures fetal receptor current in primary human myotubes. Gamma is a component of the conducting heteropentamer, not an autonomous channel. Acetylcholine-triggered gating and postsynaptic cation flow define GO:0095500 more precisely than unrestricted communication/signaling; this is the receptor's own performed signaling step. Proposed replacements: acetylcholine receptor signaling pathway |
| GO:0007165 signal transduction | TAS PMID:3967651 Cloning and sequence analysis of human genomic DNA encoding ... | MODIFY | Summary: Specify acetylcholine receptor signaling. Reason: The original PMID:3967651 abstract establishes cloned human genomic sequence and predicted four-pass topology, but its complete body was not recovered after a bounded publisher attempt. Independent human functional reconstitution supplies the positive activity evidence without attributing that assay to the cloning paper. PMID:16527851 reconstitutes wild-type human alpha1/beta1/gamma/delta receptors in rat GH4C1 cells and independently measures fetal receptor current in primary human myotubes. Gamma is a component of the conducting heteropentamer, not an autonomous channel. Acetylcholine-triggered gating and postsynaptic cation flow define GO:0095500 more precisely than unrestricted communication/signaling; this is the receptor's own performed signaling step. Proposed replacements: acetylcholine receptor signaling pathway |
| GO:0007271 synaptic transmission, cholinergic | IBA GO_REF:0000033 | ACCEPT | Summary: Retain cholinergic synaptic transmission. Reason: PMID:16527851 reconstitutes wild-type human alpha1/beta1/gamma/delta receptors in rat GH4C1 cells and independently measures fetal receptor current in primary human myotubes. Gamma is a component of the conducting heteropentamer, not an autonomous channel. Gamma helps convert the cholinergic signal to postsynaptic electrical excitation during fetal neuromuscular transmission. This is a direct receptor role, not neurotransmitter synthesis, vesicle release or a neuron-specific claim. Propagation Review Root cause: NO FAILURE CORE Sources checked: PANTHER:PTN001054960 SUPPORTS TRANSFER The authenticated current annotation records this curated PAINT assertion. Qualified support rests on that curated propagation and independently verified target-containing receptor experiments, not an independent reconstruction of the historical IBD placement, tree or MSA. Selected extant donor records are contextual corroboration; neither donor number nor target self-inclusion is treated as a failure. Supporting Evidence: GO_REF:0000033 file:human/CHRNG/CHRNG-source-evidence.json |
| GO:0015267 channel activity | IEA GO_REF:0000117 | MODIFY | Summary: Specify acetylcholine-gated cation channel activity. Reason: Official InterPro/rule source identity is retained, with direct target-containing receptor experiments providing specificity. PMID:16527851 reconstitutes wild-type human alpha1/beta1/gamma/delta receptors in rat GH4C1 cells and independently measures fetal receptor current in primary human myotubes. Gamma is a component of the conducting heteropentamer, not an autonomous channel. GO:0022848 states the ligand and cation-selective channel mechanism; the official GO:0015464 usage comment directs ionotropic nicotinic receptors to this term. Historical enables/contributes_to qualifiers are preserved exactly; the core uses contributes_to for the subunit. Proposed replacements: acetylcholine-gated monoatomic cation-selective channel activity Supporting Evidence: GO_REF:0000117 file:human/CHRNG/CHRNG-source-evidence.json |
| GO:0015267 channel activity | TAS PMID:3967651 Cloning and sequence analysis of human genomic DNA encoding ... | MODIFY | Summary: Specify acetylcholine-gated cation channel activity. Reason: The original PMID:3967651 abstract establishes cloned human genomic sequence and predicted four-pass topology, but its complete body was not recovered after a bounded publisher attempt. Independent human functional reconstitution supplies the positive activity evidence without attributing that assay to the cloning paper. PMID:16527851 reconstitutes wild-type human alpha1/beta1/gamma/delta receptors in rat GH4C1 cells and independently measures fetal receptor current in primary human myotubes. Gamma is a component of the conducting heteropentamer, not an autonomous channel. GO:0022848 states the ligand and cation-selective channel mechanism; the official GO:0015464 usage comment directs ionotropic nicotinic receptors to this term. Historical enables/contributes_to qualifiers are preserved exactly; the core uses contributes_to for the subunit. Proposed replacements: acetylcholine-gated monoatomic cation-selective channel activity |
| GO:0015464 acetylcholine receptor activity | TAS PMID:3967651 Cloning and sequence analysis of human genomic DNA encoding ... | MODIFY | Summary: Specify acetylcholine-gated cation channel activity. Reason: The original PMID:3967651 abstract establishes cloned human genomic sequence and predicted four-pass topology, but its complete body was not recovered after a bounded publisher attempt. Independent human functional reconstitution supplies the positive activity evidence without attributing that assay to the cloning paper. PMID:16527851 reconstitutes wild-type human alpha1/beta1/gamma/delta receptors in rat GH4C1 cells and independently measures fetal receptor current in primary human myotubes. Gamma is a component of the conducting heteropentamer, not an autonomous channel. GO:0022848 states the ligand and cation-selective channel mechanism; the official GO:0015464 usage comment directs ionotropic nicotinic receptors to this term. Historical enables/contributes_to qualifiers are preserved exactly; the core uses contributes_to for the subunit. Proposed replacements: acetylcholine-gated monoatomic cation-selective channel activity |
| GO:0016020 membrane | IEA GO_REF:0000002 | MODIFY | Summary: Specify the postsynaptic membrane compartment. Reason: The domain-based membrane inference is sound but broad. Human fetal receptor physiology and native bovine fetal receptor structure support the muscle postsynaptic membrane as the functional compartment (PMID:16527851; PMID:39085615). This refinement does not restrict every biosynthetic intermediate or developmental extrasynaptic receptor to a mature synapse. Proposed replacements: postsynaptic membrane Supporting Evidence: GO_REF:0000002 file:human/CHRNG/CHRNG-source-evidence.json |
| GO:0022848 acetylcholine-gated monoatomic cation-selective channel activity | IBA GO_REF:0000033 | ACCEPT | Summary: Retain the specific acetylcholine-gated cation-channel function. Reason: PMID:16527851 reconstitutes wild-type human alpha1/beta1/gamma/delta receptors in rat GH4C1 cells and independently measures fetal receptor current in primary human myotubes. Gamma is a component of the conducting heteropentamer, not an autonomous channel. PMID:39085615 resolves native bovine fetal receptors, including gamma pore and complementary ligand-site contributions; this is ortholog structural evidence, not a human structure or a test of both human products. Original qualifiers remain exact; contributes_to in the core explicitly represents the contribution of gamma to the assembled heteropentamer. Propagation Review Root cause: NO FAILURE CORE Sources checked: PANTHER:PTN008360855 SUPPORTS TRANSFER The authenticated current annotation records this curated PAINT assertion. Qualified support rests on that curated propagation and independently verified target-containing receptor experiments, not an independent reconstruction of the historical IBD placement, tree or MSA. Selected extant donor records are contextual corroboration; neither donor number nor target self-inclusion is treated as a failure. Supporting Evidence: GO_REF:0000033 file:human/CHRNG/CHRNG-source-evidence.json |
| GO:0022848 acetylcholine-gated monoatomic cation-selective channel activity | IEA GO_REF:0000002 | ACCEPT | Summary: Retain the specific acetylcholine-gated cation-channel function. Reason: PMID:16527851 reconstitutes wild-type human alpha1/beta1/gamma/delta receptors in rat GH4C1 cells and independently measures fetal receptor current in primary human myotubes. Gamma is a component of the conducting heteropentamer, not an autonomous channel. PMID:39085615 resolves native bovine fetal receptors, including gamma pore and complementary ligand-site contributions; this is ortholog structural evidence, not a human structure or a test of both human products. Original qualifiers remain exact; contributes_to in the core explicitly represents the contribution of gamma to the assembled heteropentamer. Supporting Evidence: GO_REF:0000002 file:human/CHRNG/CHRNG-source-evidence.json |
| GO:0023052 signaling | IEA GO_REF:0000117 | MODIFY | Summary: Specify acetylcholine receptor signaling. Reason: PMID:16527851 reconstitutes wild-type human alpha1/beta1/gamma/delta receptors in rat GH4C1 cells and independently measures fetal receptor current in primary human myotubes. Gamma is a component of the conducting heteropentamer, not an autonomous channel. Acetylcholine-triggered gating and postsynaptic cation flow define GO:0095500 more precisely than unrestricted communication/signaling; this is the receptor's own performed signaling step. Proposed replacements: acetylcholine receptor signaling pathway |
| GO:0034220 monoatomic ion transmembrane transport | IBA GO_REF:0000033 | MODIFY | Summary: Specify monoatomic cation transmembrane transport. Reason: PMID:16527851 reconstitutes wild-type human alpha1/beta1/gamma/delta receptors in rat GH4C1 cells and independently measures fetal receptor current in primary human myotubes. Gamma is a component of the conducting heteropentamer, not an autonomous channel. The measured inward current and native ortholog pore establish cation passage across the membrane. GO:0098655 preserves both ion charge and the membrane step more precisely than the original broad term. PMID:39085615 resolves native bovine fetal receptors, including gamma pore and complementary ligand-site contributions; this is ortholog structural evidence, not a human structure or a test of both human products. Propagation Review Root cause: TERM SCOPING PROBLEM Sources checked: PANTHER:PTN000434994 SUPPORTS TRANSFER The authenticated current annotation records this curated PAINT assertion. Qualified support rests on that curated propagation and independently verified target-containing receptor experiments, not an independent reconstruction of the historical IBD placement, tree or MSA. Selected extant donor records are contextual corroboration; neither donor number nor target self-inclusion is treated as a failure. Proposed replacements: monoatomic cation transmembrane transport Supporting Evidence: GO_REF:0000033 file:human/CHRNG/CHRNG-source-evidence.json |
| GO:0034220 monoatomic ion transmembrane transport | IEA GO_REF:0000002 | MODIFY | Summary: Specify monoatomic cation transmembrane transport. Reason: PMID:16527851 reconstitutes wild-type human alpha1/beta1/gamma/delta receptors in rat GH4C1 cells and independently measures fetal receptor current in primary human myotubes. Gamma is a component of the conducting heteropentamer, not an autonomous channel. The measured inward current and native ortholog pore establish cation passage across the membrane. GO:0098655 preserves both ion charge and the membrane step more precisely than the original broad term. PMID:39085615 resolves native bovine fetal receptors, including gamma pore and complementary ligand-site contributions; this is ortholog structural evidence, not a human structure or a test of both human products. Proposed replacements: monoatomic cation transmembrane transport Supporting Evidence: GO_REF:0000002 file:human/CHRNG/CHRNG-source-evidence.json |
| GO:0045211 postsynaptic membrane | IEA GO_REF:0000120 | ACCEPT | Summary: Retain the postsynaptic membrane location. Reason: Gamma-containing fetal receptors mediate excitation on the muscle side of the neuromuscular junction, consistent with human receptor physiology and native bovine receptor structure (PMID:16527851; PMID:39085615). Retain the original postsynaptic location or active-in relation; developmental extrasynaptic expression is not excluded. Supporting Evidence: GO_REF:0000120 file:human/CHRNG/CHRNG-source-evidence.json |
| GO:0051899 membrane depolarization | IBA GO_REF:0000033 | ACCEPT | Summary: Retain postsynaptic electrical excitation by the receptor. Reason: PMID:16527851 reconstitutes wild-type human alpha1/beta1/gamma/delta receptors in rat GH4C1 cells and independently measures fetal receptor current in primary human myotubes. Gamma is a component of the conducting heteropentamer, not an autonomous channel. Opening the cation pore supplies depolarizing inward current and the excitatory postsynaptic potential. This is actual ion-channel work rather than an inference solely from disease or fetal immobility. The gamma-containing assembly, not gamma alone, performs the conductance. Propagation Review Root cause: NO FAILURE CORE Sources checked: PANTHER:PTN001450431 SUPPORTS TRANSFER The authenticated current annotation records this curated PAINT assertion. Qualified support rests on that curated propagation and independently verified target-containing receptor experiments, not an independent reconstruction of the historical IBD placement, tree or MSA. Selected extant donor records are contextual corroboration; neither donor number nor target self-inclusion is treated as a failure. Supporting Evidence: GO_REF:0000033 file:human/CHRNG/CHRNG-source-evidence.json |
| GO:0060078 regulation of postsynaptic membrane potential | IEA GO_REF:0000120 | ACCEPT | Summary: Retain postsynaptic electrical excitation by the receptor. Reason: PMID:16527851 reconstitutes wild-type human alpha1/beta1/gamma/delta receptors in rat GH4C1 cells and independently measures fetal receptor current in primary human myotubes. Gamma is a component of the conducting heteropentamer, not an autonomous channel. Opening the cation pore supplies depolarizing inward current and the excitatory postsynaptic potential. This is actual ion-channel work rather than an inference solely from disease or fetal immobility. The gamma-containing assembly, not gamma alone, performs the conductance. Supporting Evidence: GO_REF:0000120 file:human/CHRNG/CHRNG-source-evidence.json |
| GO:0060079 excitatory postsynaptic potential | IEA GO_REF:0000108 | ACCEPT | Summary: Retain postsynaptic electrical excitation by the receptor. Reason: PMID:16527851 reconstitutes wild-type human alpha1/beta1/gamma/delta receptors in rat GH4C1 cells and independently measures fetal receptor current in primary human myotubes. Gamma is a component of the conducting heteropentamer, not an autonomous channel. Opening the cation pore supplies depolarizing inward current and the excitatory postsynaptic potential. This is actual ion-channel work rather than an inference solely from disease or fetal immobility. The gamma-containing assembly, not gamma alone, performs the conductance. Supporting Evidence: GO_REF:0000108 file:human/CHRNG/CHRNG-source-evidence.json |
| GO:0095500 acetylcholine receptor signaling pathway | IBA GO_REF:0000033 | ACCEPT | Summary: Retain acetylcholine receptor signaling. Reason: PMID:16527851 reconstitutes wild-type human alpha1/beta1/gamma/delta receptors in rat GH4C1 cells and independently measures fetal receptor current in primary human myotubes. Gamma is a component of the conducting heteropentamer, not an autonomous channel. Ligand-dependent current is the receptor-signaling step; the curated PAINT premise is not reduced to a neuronal donor count. Propagation Review Root cause: NO FAILURE CORE Sources checked: PANTHER:PTN001450431 SUPPORTS TRANSFER The authenticated current annotation records this curated PAINT assertion. Qualified support rests on that curated propagation and independently verified target-containing receptor experiments, not an independent reconstruction of the historical IBD placement, tree or MSA. Selected extant donor records are contextual corroboration; neither donor number nor target self-inclusion is treated as a failure. |
| GO:0099565 chemical synaptic transmission, postsynaptic | IEA GO_REF:0000108 | ACCEPT | Summary: Retain the postsynaptic part of chemical synaptic transmission. Reason: PMID:16527851 reconstitutes wild-type human alpha1/beta1/gamma/delta receptors in rat GH4C1 cells and independently measures fetal receptor current in primary human myotubes. Gamma is a component of the conducting heteropentamer, not an autonomous channel. The molecular role is on the receiving muscle membrane. The logical inference from specific transmitter-gated channel activity is consistent with this directly performed postsynaptic step. |
| GO:0099634 postsynaptic specialization membrane | IBA GO_REF:0000033 | ACCEPT | Summary: Retain the postsynaptic membrane location. Reason: Gamma-containing fetal receptors mediate excitation on the muscle side of the neuromuscular junction, consistent with human receptor physiology and native bovine receptor structure (PMID:16527851; PMID:39085615). Retain the original postsynaptic location or active-in relation; developmental extrasynaptic expression is not excluded. Propagation Review Root cause: NO FAILURE CORE Sources checked: PANTHER:PTN008360855 SUPPORTS TRANSFER The authenticated current annotation records this curated PAINT assertion. Qualified support rests on that curated propagation and independently verified target-containing receptor experiments, not an independent reconstruction of the historical IBD placement, tree or MSA. Selected extant donor records are contextual corroboration; neither donor number nor target self-inclusion is treated as a failure. Supporting Evidence: GO_REF:0000033 file:human/CHRNG/CHRNG-source-evidence.json |
| GO:1904315 transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential | ISS GO_REF:0000024 | MODIFY | Summary: Specify acetylcholine-gated cation channel activity. Reason: The original bovine P13536 ortholog, PMID:2423878 donor premises and enables qualifier are preserved. GO:0022848 is an explicit is_a child of GO:1904315 in the retrieved ontology, so the replacement preserves the postsynaptic channel context while specifying acetylcholine and cation selectivity. Human gamma-containing receptor measurements in PMID:16527851 independently support this mechanism. The subunit contributes to the conducting heteropentamer; no autonomous gamma channel or new historical qualifier is asserted. Proposed replacements: acetylcholine-gated monoatomic cation-selective channel activity Supporting Evidence: GO_REF:0000024 file:human/CHRNG/CHRNG-source-evidence.json |
| GO:0042166 acetylcholine binding | ISS PMID:39085615 Structural switch in acetylcholine receptors in developing m... | NEW | Summary: Add the conserved complementary ligand-binding contribution. Reason: Native bovine fetal receptor cryo-EM in PMID:39085615 resolves gamma at the complementary alpha1/gamma acetylcholine pocket: W77 contributes the aromatic enclosure, N129/L141 coordinate the ligand-associated water, and Y139 covers the ligand. Official 9AVU entity 4 chain B exactly matches bovine P13536 residues 23β519. Human canonical P07510 retains the eight checked contact/stabilizing positions 75/77/79/83/129/137/139/141; adjacent bovine V138 versus human I138 is explicitly different. This is an ISS inference for gamma contribution within the assembled receptor, not human structural IDA, an isolated-gamma affinity assay or autonomous binding. P07510-2 replaces canonical residues 117β169 with lysine and is untested; this assertion does not establish equivalent activity of that product. Current same-role CHRND contributes_to binding shows that complementary-subunit participation is representable. Typed is_a/part_of checks find no overlap with existing terms; binding adds ligand-contact coverage without a NEW process or separate core mechanism. Supporting Evidence: PMID:39085615 Ξ³Y139 provides a hydrophobic cover, locking ACh file:human/CHRNG/CHRNG-source-evidence.json |
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Download this section (compressed HTML)Q: Does P07510-2, which replaces residues 117β169 with lysine, assemble with alpha1/beta1/delta and retain ligand binding and gating, and where is it expressed?
Q: Should the Reactome source chain that places the delta/epsilon/gamma set inside alpha3-beta4 receptor complex 532621 be separated into biologically distinct receptor assemblies while preserving the correct plasma-membrane compartment?
Q: Can the screen-supported CHRNG interactions with KRT31, KRTAP proteins and NOTCH2NLA be reproduced in membrane-compatible systems or endogenous tissues, and do they affect receptor abundance or activity?
Experiment: Compare sequence-verified P07510-1 and P07510-2 with identical human alpha1/beta1/delta partners using surface labeling, ligand competition and single-channel recording; normalize to receptor abundance to separate assembly loss from altered affinity or gating.
Experiment: Test conserved gamma complementary-site substitutions in the human fetal receptor with surface-expression controls and matched kinetic/binding measurements, distinguishing ligand recognition from secondary effects of altered receptor state occupancy.
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