CKB encodes the B-type (brain-type) cytosolic creatine kinase, a 381-residue enzyme (EC 2.7.3.2) of the ATP:guanido phosphotransferase (phosphagen kinase) family. It reversibly catalyzes transfer of the high-energy phosphoryl group between ATP and creatine (creatine + ATP = N-phosphocreatine + ADP + H+), interconverting ATP and the phosphocreatine energy reservoir. The active enzyme is a dimer: B-CK assembles into CK-BB homodimers and, with the muscle-type subunit CKM, into CK-MB heterodimers. As the cytosolic limb of the phosphocreatine/creatine-kinase shuttle, B-CK is functionally coupled to ATP-consuming processes (e.g. membrane ion transporters and other ATPases), locally regenerating ATP from phosphocreatine and providing temporal and spatial energy buffering in cells with high, fluctuating energy demands. B-CK is the predominant cytosolic creatine kinase of brain and is broadly expressed in smooth muscle and most non-muscle tissues. Beyond catalysis it acts as an ATP-regenerating partner in membrane microcompartments — for example binding the C-terminal domain of the K-Cl cotransporter KCC3 (SLC12A6) and supporting its transport activity — and is a substrate of the ECS(ASB9) Cullin-RING E3 ubiquitin ligase, which targets it for proteasomal degradation.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0005576
extracellular region
|
IBA
GO_REF:0000033 |
REMOVE |
Summary: Phylogenetic (IBA) inference that B-CK is active in the extracellular region. B-CK is a cytosolic enzyme; it is detected in exosomes/secretome but is not active extracellularly. The "is_active_in extracellular region" call is an over-propagation and is biologically incorrect as a site of activity.
Reason: Creatine kinase catalysis requires cytosolic ATP/ADP and creatine; the enzyme is not known to function in the extracellular region. Detection in secreted vesicles does not make the extracellular region a site of activity, so an "is_active_in extracellular region" assertion is incorrect. Aligned with the parallel CKM review, which REMOVEs the identical IBA annotation; genuine extracellular/exosome detection is retained separately under the extracellular-exosome annotations.
|
|
GO:0004111
creatine kinase activity
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Creatine kinase activity is the core molecular function of CKB, supported phylogenetically (IBA) and experimentally. Accept.
Reason: This is the defining, experimentally established activity of CKB (EC 2.7.3.2); the IBA inference is consistent with direct assays.
Supporting Evidence:
PMID:8186255
The results showed residues Cys-283 and Arg-292 are essential for enzyme catalysis.
|
|
GO:0046314
phosphocreatine biosynthetic process
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: The biological process corresponding to the forward (ATP -> phosphocreatine) direction of the creatine kinase reaction. Core process for CKB. Accept.
Reason: Directly reflects the physiological left-to-right reaction direction catalyzed by CKB; consistent with the experimentally demonstrated activity.
|
|
GO:0003824
catalytic activity
|
IEA
GO_REF:0000002 |
MARK AS OVER ANNOTATED |
Summary: Generic root catalytic-activity term assigned by InterPro2GO. Correct but uninformative; subsumed by the specific creatine kinase activity annotation.
Reason: A high-level ancestor of GO:0004111; adds no information beyond the specific molecular function and should not be retained as a meaningful annotation.
|
|
GO:0004111
creatine kinase activity
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Electronic (IEA) assignment of the core creatine kinase activity, consistent with experimental evidence. Accept (redundant with the experimental annotation but correct).
Reason: Same correct core molecular function; electronic support via RHEA/EC mapping aligns with direct evidence.
|
|
GO:0005739
mitochondrion
|
IEA
GO_REF:0000120 |
MARK AS OVER ANNOTATED |
Summary: Electronic mitochondrion localization transferred by similarity from the mouse ortholog (Q04447) in the context of thermogenic-fat / futile-creatine-cycle biology. Human CKB is predominantly cytosolic; a mitochondrial pool is not directly demonstrated for human B-CK.
Reason: B-CK is the cytosolic creatine kinase isoform; mitochondrial creatine kinase is a distinct gene product (uMtCK/CKMT1). The mitochondrial call is a by-similarity transfer specific to adipocyte thermogenesis and is not the core localization of human CKB.
|
|
GO:0005829
cytosol
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: Electronic cytosol localization from the UniProt subcellular-location mapping. Correct core localization. Accept.
Reason: B-CK is a cytosolic enzyme; consistent with IDA (HPA) and Reactome TAS annotations to cytosol.
|
|
GO:0005886
plasma membrane
|
IEA
GO_REF:0000044 |
KEEP AS NON CORE |
Summary: Electronic plasma-membrane call from UniProt subcellular-location mapping, reflecting peripheral recruitment of B-CK to membrane ATPase microcompartments (e.g. with KCC3). Real but peripheral, not the core compartment.
Reason: CKB is not an integral membrane protein; it is recruited to the membrane to supply ATP to transporters such as KCC3 (PMID:18566107). Retain as a non-core peripheral localization.
|
|
GO:0016301
kinase activity
|
IEA
GO_REF:0000002 |
MARK AS OVER ANNOTATED |
Summary: Generic kinase-activity parent from InterPro2GO; subsumed by the specific creatine kinase activity. Uninformative.
Reason: Ancestor of GO:0004111; carries no information beyond the specific molecular function.
|
|
GO:0016772
transferase activity, transferring phosphorus-containing groups
|
IEA
GO_REF:0000002 |
MARK AS OVER ANNOTATED |
Summary: Generic phosphotransferase parent from InterPro2GO; subsumed by the specific creatine kinase activity. Uninformative.
Reason: High-level ancestor of GO:0004111; redundant generic term.
|
|
GO:0016775
phosphotransferase activity, nitrogenous group as acceptor
|
IEA
GO_REF:0000002 |
MARK AS OVER ANNOTATED |
Summary: The immediate parent class of creatine kinase activity (phosphotransfer to a nitrogenous/guanidino acceptor). Correct but redundant with the specific term.
Reason: Direct ancestor of GO:0004111; the specific creatine kinase activity term is preferred and makes this generic term redundant.
|
|
GO:0046314
phosphocreatine biosynthetic process
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: Electronic assignment of the core phosphocreatine biosynthetic process, consistent with experimental evidence. Accept.
Reason: Correct core process for CKB; redundant with the IDA/IBA annotations but not erroneous.
|
|
GO:0005515
protein binding
|
IPI
PMID:16189514 Towards a proteome-scale map of the human protein-protein in... |
KEEP AS NON CORE |
Summary: Generic 'protein binding' from a high-throughput interactome screen. Uninformative as a molecular function; the biologically meaningful interactions are captured by more specific annotations.
Reason: Bare protein binding does not describe a function; retained as non-core evidence of interaction only.
|
|
GO:0005515
protein binding
|
IPI
PMID:19060904 An empirical framework for binary interactome mapping. |
KEEP AS NON CORE |
Summary: Generic 'protein binding' from a high-throughput binary interactome. Uninformative molecular function.
Reason: Bare protein binding is not a core function; retained as non-core.
|
|
GO:0005515
protein binding
|
IPI
PMID:19264780 Involvement of creatine kinase B in hepatitis C virus genome... |
KEEP AS NON CORE |
Summary: Interaction with hepatitis C virus NS4A, recruiting CKB to the viral replication complex. A genuine moonlighting interaction but represented only as generic 'protein binding'.
Reason: Biologically real host-factor interaction (PMID:19264780) but a non-core, condition-specific role; the bare term is uninformative as a core function.
Supporting Evidence:
PMID:19264780
CKB interacts with HCV NS4A protein and forms a complex with NS3-4A, which possesses multiple enzyme activities.
|
|
GO:0005515
protein binding
|
IPI
PMID:21145461 Dynamics of cullin-RING ubiquitin ligase network revealed by... |
KEEP AS NON CORE |
Summary: Generic 'protein binding' from a cullin-RING ligase network proteomic study (CUL3 association). Uninformative as a function.
Reason: Bare protein binding; relates to CKB's role as a CRL substrate, retained as non-core.
|
|
GO:0005515
protein binding
|
IPI
PMID:25416956 A proteome-scale map of the human interactome network. |
KEEP AS NON CORE |
Summary: Generic 'protein binding' from a high-throughput interactome map. Uninformative molecular function.
Reason: Bare protein binding is not a core function; retained as non-core.
|
|
GO:0005515
protein binding
|
IPI
PMID:28514442 Architecture of the human interactome defines protein commun... |
KEEP AS NON CORE |
Summary: Generic 'protein binding' from a BioPlex interactome (includes CKM and ASB9 partners). Uninformative as a standalone function.
Reason: Bare protein binding; the meaningful partners (CKM dimerization, ASB9 E3 ligase) are better captured specifically. Retained as non-core.
|
|
GO:0005515
protein binding
|
IPI
PMID:32296183 A reference map of the human binary protein interactome. |
KEEP AS NON CORE |
Summary: Generic 'protein binding' from the HuRI binary interactome (ASB9). Uninformative molecular function.
Reason: Bare protein binding is not a core function; retained as non-core.
|
|
GO:0005515
protein binding
|
IPI
PMID:33961781 Dual proteome-scale networks reveal cell-specific remodeling... |
KEEP AS NON CORE |
Summary: Generic 'protein binding' from a dual proteome-scale interactome (CKM, ASB9). Uninformative molecular function.
Reason: Bare protein binding is not a core function; retained as non-core.
|
|
GO:0005515
protein binding
|
IPI
PMID:35271311 OpenCell: Endogenous tagging for the cartography of human ce... |
KEEP AS NON CORE |
Summary: Generic 'protein binding' from the OpenCell endogenous-tagging map. Uninformative molecular function.
Reason: Bare protein binding is not a core function; retained as non-core.
|
|
GO:0005515
protein binding
|
IPI
PMID:37207277 Using brain cell-type-specific protein interactomes to inter... |
KEEP AS NON CORE |
Summary: Generic 'protein binding' from a brain cell-type interactome (TCF4, CUL3). Uninformative molecular function.
Reason: Bare protein binding is not a core function; retained as non-core.
|
|
GO:0005515
protein binding
|
IPI
PMID:40205054 Multimodal cell maps as a foundation for structural and func... |
KEEP AS NON CORE |
Summary: Generic 'protein binding' from a multimodal cell-map interactome (ASB9). Uninformative molecular function.
Reason: Bare protein binding is not a core function; retained as non-core.
|
|
GO:0140651
futile creatine cycle
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: Electronic transfer (from mouse Q04447) of involvement in the futile creatine cycle (adipocyte thermogenesis). This role is characterized for the thermogenic-fat mitochondrial creatine cycle and has not been demonstrated for human B-CK; retain as a non-core, by-similarity possibility.
Reason: The futile creatine cycle is a specialized thermogenic-fat process inferred by orthology; it is plausible but not the core energy-buffering function of cytosolic B-CK in humans.
|
|
GO:0005829
cytosol
|
IDA
GO_REF:0000052 |
ACCEPT |
Summary: Direct immunofluorescence (HPA) localization to the cytosol. This is the core, experimentally supported localization of B-CK. Accept.
Reason: B-CK is a cytosolic enzyme; IDA from HPA directly supports the core localization.
|
|
GO:0005739
mitochondrion
|
ISS
GO_REF:0000024 |
MARK AS OVER ANNOTATED |
Summary: ISS mitochondrion localization transferred from mouse Q04447 (thermogenic-fat creatine cycle). Not the core compartment of human cytosolic B-CK.
Reason: By-similarity mitochondrial localization tied to adipocyte thermogenesis; human B-CK is the cytosolic isoform and a mitochondrial pool is not directly established.
|
|
GO:0005886
plasma membrane
|
EXP
PMID:18566107 HMSN/ACC truncation mutations disrupt brain-type creatine ki... |
KEEP AS NON CORE |
Summary: Experimental co-localization of CK-B with KCC3 at the plasma membrane, consistent with recruitment of B-CK to membrane ATPase microcompartments. Real but peripheral, not the core cytosolic compartment.
Reason: CKB associates with the membrane via interaction with the KCC3 transporter to supply ATP locally; it is not an integral membrane protein. Retain as a non-core peripheral localization.
Supporting Evidence:
PMID:18566107
immunofluorescence labeling showed that CK-B co-localizes with wild-type KCC3
|
|
GO:0004111
creatine kinase activity
|
IDA
PMID:8186255 Determination of the catalytic site of creatine kinase by si... |
ACCEPT |
Summary: Direct experimental evidence (site-directed mutagenesis of human B-CK) for creatine kinase activity, including identification of essential catalytic residues. The strongest support for the core molecular function. Accept.
Reason: Direct assay of human CKB enzymatic activity; defines the core molecular function (EC 2.7.3.2).
Supporting Evidence:
PMID:8186255
The results showed residues Cys-283 and Arg-292 are essential for enzyme catalysis.
|
|
GO:0046314
phosphocreatine biosynthetic process
|
IDA
PMID:8186255 Determination of the catalytic site of creatine kinase by si... |
ACCEPT |
Summary: Direct evidence for the phosphocreatine-forming (forward) direction of the creatine kinase reaction. Core process for CKB. Accept.
Reason: Reflects the physiological left-to-right reaction catalyzed by CKB, directly demonstrated for the human enzyme.
|
|
GO:0004111
creatine kinase activity
|
ISS
GO_REF:0000024 |
ACCEPT |
Summary: ISS support (from ortholog) for the core creatine kinase activity. Consistent with direct evidence. Accept.
Reason: Correct core molecular function; redundant with the experimental annotation but not erroneous.
|
|
GO:0005739
mitochondrion
|
ISS
GO_REF:0000024 |
MARK AS OVER ANNOTATED |
Summary: ISS 'is_active_in mitochondrion' transferred from mouse Q04447. Human B-CK is the cytosolic isoform; an active mitochondrial pool is not directly established.
Reason: By-similarity mitochondrial activity tied to thermogenic-fat biology; not the core localization or site of activity of human cytosolic B-CK.
|
|
GO:0070062
extracellular exosome
|
HDA
PMID:11487543 Intestinal epithelial cells secrete exosome-like vesicles. |
KEEP AS NON CORE |
Summary: High-throughput proteomic detection of CKB in exosomes. A real observation but reflects passive secretion/vesicle loading rather than a functional compartment.
Reason: Exosome detection is common for abundant cytosolic enzymes; retain as a non-core localization, not a site of creatine kinase function.
|
|
GO:0005576
extracellular region
|
ISS
GO_REF:0000024 |
MARK AS OVER ANNOTATED |
Summary: ISS extracellular-region localization transferred from an ortholog. B-CK is a cytosolic enzyme; extracellular detection (exosomes/secretome) does not establish a functional extracellular localization.
Reason: Over-propagated localization for a cytosolic enzyme; not a site of activity. Exosomal detection is better captured by the exosome annotation.
|
|
GO:0031625
ubiquitin protein ligase binding
|
IPI
PMID:19725078 Proteomic analysis of increased Parkin expression and its in... |
KEEP AS NON CORE |
Summary: CKB binds an E3 ubiquitin ligase component (Parkin/E3 interactant proteomics), consistent with CKB being a substrate of the ECS(ASB9) Cullin-RING E3 ligase that targets it for degradation. A real binding activity but reflecting CKB's role as a degradation substrate rather than a core enzyme function.
Reason: Informative interaction (E3 ligase/degradation axis) but not part of CKB's core energy-metabolism function; retain as non-core.
|
|
GO:0070062
extracellular exosome
|
HDA
PMID:23533145 In-depth proteomic analyses of exosomes isolated from expres... |
KEEP AS NON CORE |
Summary: High-throughput proteomic detection of CKB in prostatic-secretion exosomes. Same interpretation as other exosome detections.
Reason: Proteomic exosome detection; non-core localization, not a functional compartment for catalysis.
|
|
GO:0021762
substantia nigra development
|
HEP
PMID:22926577 Quantitative proteomic analysis of human substantia nigra in... |
MARK AS OVER ANNOTATED |
Summary: HEP annotation derived from a disease-state differential-abundance proteomic survey of human substantia nigra. Differential expression in neurodegenerative disease does not establish a role in substantia nigra development.
Reason: The supporting study compares protein abundance in disease vs control substantia nigra; it does not provide evidence that CKB is involved in the developmental process. Over-interpretation of an expression observation.
|
|
GO:0070062
extracellular exosome
|
HDA
PMID:19056867 Large-scale proteomics and phosphoproteomics of urinary exos... |
KEEP AS NON CORE |
Summary: High-throughput proteomic detection of CKB in urinary exosomes. Same interpretation as other exosome detections.
Reason: Proteomic exosome detection; non-core localization.
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-200318 |
ACCEPT |
Summary: Traceable author statement (Reactome) placing the creatine kinase reaction in the cytosol. Consistent with the core cytosolic localization. Accept.
Reason: Correct core localization; the creatine kinase reaction catalyzed by CKB occurs in the cytosol.
|
|
GO:0004111
creatine kinase activity
|
TAS
PMID:3034271 Human creatine kinase: isolation and sequence analysis of cD... |
ACCEPT |
Summary: Traceable author statement (original CKB cDNA cloning paper) for creatine kinase activity. Core molecular function. Accept.
Reason: Correct core molecular function, supported by the foundational cloning/characterization reference.
|
Q: Does human cytosolic B-CK have any direct, functionally relevant mitochondrial or futile-creatine-cycle role, or are the mitochondrion/futile-cycle annotations entirely by-similarity from the mouse thermogenic-fat ortholog?
Q: How general is the role of B-CK as an ATP-supplying partner physically coupled to membrane ATPases/transporters (e.g. KCC2/KCC3) across tissues, and is its kinase activity strictly required for transporter function?
Experiment: Determine the subcellular distribution of endogenous human B-CK (cytosol vs mitochondrion vs membrane microcompartments) across brain, smooth muscle, and adipose tissue using fractionation and quantitative imaging, to test whether any mitochondrial/futile-cycle role exists for the human protein.
Hypothesis: Human B-CK is overwhelmingly cytosolic, with membrane and mitochondrial pools being minor and context-specific.
Experiment: Reconstitute B-CK with KCC2/KCC3 in a controlled system and measure cotransport activity with catalytically active versus catalytically dead B-CK to test whether local ATP regeneration, rather than mere binding, drives transporter activation.
Hypothesis: B-CK kinase activity is required to sustain KCC transporter activity by locally regenerating ATP at the membrane microcompartment.
id: P12277
gene_symbol: CKB
product_type: PROTEIN
status: COMPLETE
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: >-
CKB encodes the B-type (brain-type) cytosolic creatine kinase, a 381-residue
enzyme (EC 2.7.3.2) of the ATP:guanido phosphotransferase (phosphagen kinase)
family. It reversibly catalyzes transfer of the high-energy phosphoryl group
between ATP and creatine (creatine + ATP = N-phosphocreatine + ADP + H+),
interconverting ATP and the phosphocreatine energy reservoir. The active enzyme
is a dimer: B-CK assembles into CK-BB homodimers and, with the muscle-type
subunit CKM, into CK-MB heterodimers. As the cytosolic limb of the
phosphocreatine/creatine-kinase shuttle, B-CK is functionally coupled to
ATP-consuming processes (e.g. membrane ion transporters and other ATPases),
locally regenerating ATP from phosphocreatine and providing temporal and spatial
energy buffering in cells with high, fluctuating energy demands. B-CK is the
predominant cytosolic creatine kinase of brain and is broadly expressed in smooth
muscle and most non-muscle tissues. Beyond catalysis it acts as an
ATP-regenerating partner in membrane microcompartments — for example binding the
C-terminal domain of the K-Cl cotransporter KCC3 (SLC12A6) and supporting its
transport activity — and is a substrate of the ECS(ASB9) Cullin-RING E3 ubiquitin
ligase, which targets it for proteasomal degradation.
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO
terms
findings: []
- id: GO_REF:0000024
title: Manual transfer of experimentally-verified manual GO annotation data to orthologs
by curator judgment of sequence similarity
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location
vocabulary mapping, accompanied by conservative changes to GO terms applied by
UniProt
findings: []
- id: GO_REF:0000052
title: Gene Ontology annotation based on curation of immunofluorescence data
findings: []
- id: GO_REF:0000107
title: Automatic transfer of experimentally verified manual GO annotation data to
orthologs using Ensembl Compara
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:11487543
title: Intestinal epithelial cells secrete exosome-like vesicles.
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: Proteomic exosome study; supports detection of CKB in secreted
vesicles but not a functional extracellular role.
- id: PMID:16189514
title: Towards a proteome-scale map of the human protein-protein interaction network.
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: High-throughput Y2H interactome map; generic 'protein binding'
support, low functional informativeness for CKB.
- id: PMID:18566107
title: HMSN/ACC truncation mutations disrupt brain-type creatine kinase-dependant
activation of K+/Cl- co-transporter 3.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Establishes CK-B (CKB) binding to the KCC3/SLC12A6 C-terminal
domain, co-localization at the membrane, and a kinase-dependent functional
role in cotransport.
- id: PMID:19056867
title: Large-scale proteomics and phosphoproteomics of urinary exosomes.
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: Exosome proteomic detection of CKB; supports exosome localization
annotation, not a functional role.
- id: PMID:19060904
title: An empirical framework for binary interactome mapping.
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: High-throughput binary interactome; generic protein-binding hit.
- id: PMID:19264780
title: Involvement of creatine kinase B in hepatitis C virus genome replication
through interaction with the viral NS4A protein.
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Shows CKB interacts with HCV NS4A and is recruited to the viral
replication complex; a moonlighting host-factor role, not a core function.
- id: PMID:19725078
title: Proteomic analysis of increased Parkin expression and its interactants provides
evidence for a role in modulation of mitochondrial function.
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: Parkin (E3 ligase) interactant proteomics; supports CKB as an E3
ligase-binding substrate, not an independent CKB function.
- id: PMID:21145461
title: Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative
proteomics.
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: CRL network proteomics; CKB recorded as a CUL3-associated protein
(consistent with ECS/Cullin-RING substrate role).
- id: PMID:22926577
title: Quantitative proteomic analysis of human substantia nigra in Alzheimer's
disease, Huntington's disease and Multiple sclerosis.
findings: []
reference_review:
relevance: LOW
correctness: MISCITED
review_notes: A disease-state differential-abundance proteomic survey of substantia
nigra; it does not demonstrate a role for CKB in substantia nigra development.
- id: PMID:23533145
title: In-depth proteomic analyses of exosomes isolated from expressed prostatic
secretions in urine.
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: Exosome proteomic detection; supports exosome localization, not a
functional extracellular role.
- id: PMID:25416956
title: A proteome-scale map of the human interactome network.
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: High-throughput interactome map; generic protein-binding support.
- id: PMID:28514442
title: Architecture of the human interactome defines protein communities and disease
networks.
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: High-throughput interactome (BioPlex); generic protein-binding hits
including CKM and ASB9.
- id: PMID:3034271
title: 'Human creatine kinase: isolation and sequence analysis of cDNA clones for
the B subunit, development of subunit specific probes and determination of gene
copy number.'
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Original cloning/sequence of the human CKB (B-subunit) cDNA;
cited for creatine kinase activity (TAS).
- id: PMID:32296183
title: A reference map of the human binary protein interactome.
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: High-throughput binary interactome (HuRI); generic protein-binding
hit (ASB9).
- id: PMID:33961781
title: Dual proteome-scale networks reveal cell-specific remodeling of the human
interactome.
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: High-throughput interactome; generic protein-binding hits (CKM,
ASB9).
- id: PMID:35271311
title: 'OpenCell: Endogenous tagging for the cartography of human cellular organization.'
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: Endogenous-tagging interactome/localization map; generic protein-binding
hit.
- id: PMID:37207277
title: Using brain cell-type-specific protein interactomes to interpret neurodevelopmental
genetic signals in schizophrenia.
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: Brain cell-type interactome study; generic protein-binding hits
(TCF4, CUL3).
- id: PMID:40205054
title: Multimodal cell maps as a foundation for structural and functional genomics.
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: Multimodal cell-map interactome; generic protein-binding hit (ASB9).
- id: PMID:8186255
title: Determination of the catalytic site of creatine kinase by site-directed mutagenesis.
findings:
- statement: Site-directed mutagenesis of human B-CK shows Cys-283 and Arg-292
are essential for catalysis; mutants abolish homodimer enzymatic activity
without preventing dimerization.
supporting_text: The results showed residues Cys-283 and Arg-292 are essential
for enzyme catalysis.
reference_section_type: ABSTRACT
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Direct functional evidence for human CKB creatine kinase activity
and its catalytic residues; basis for the GO:0004111 IDA and GO:0046314 IDA.
- id: PMID:18977227
title: Structural studies of human brain-type creatine kinase complexed with the
ADP-Mg2+-NO3--creatine transition-state analogue complex.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Crystal structure of human B-CK with transition-state analogue;
confirms active site, substrate binding, and the dimer.
- id: PMID:21448658
title: The creatine kinase system and pleiotropic effects of creatine.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Authoritative review of the PCr/CK shuttle and energy-buffering
roles of cytosolic creatine kinases.
- id: Reactome:R-HSA-200318
title: creatine + ATP => phosphocreatine + ADP [CKB,CKM]
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Reactome reaction for the creatine kinase activity of CKB/CKM.
existing_annotations:
- term:
id: GO:0005576
label: extracellular region
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: Phylogenetic (IBA) inference that B-CK is active in the extracellular
region. B-CK is a cytosolic enzyme; it is detected in exosomes/secretome but
is not active extracellularly. The "is_active_in extracellular region" call
is an over-propagation and is biologically incorrect as a site of activity.
action: REMOVE
reason: Creatine kinase catalysis requires cytosolic ATP/ADP and creatine; the
enzyme is not known to function in the extracellular region. Detection in
secreted vesicles does not make the extracellular region a site of activity,
so an "is_active_in extracellular region" assertion is incorrect. Aligned with
the parallel CKM review, which REMOVEs the identical IBA annotation; genuine
extracellular/exosome detection is retained separately under the
extracellular-exosome annotations.
- term:
id: GO:0004111
label: creatine kinase activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: Creatine kinase activity is the core molecular function of CKB,
supported phylogenetically (IBA) and experimentally. Accept.
action: ACCEPT
reason: This is the defining, experimentally established activity of CKB
(EC 2.7.3.2); the IBA inference is consistent with direct assays.
supported_by:
- reference_id: PMID:8186255
supporting_text: The results showed residues Cys-283 and Arg-292 are essential
for enzyme catalysis.
- term:
id: GO:0046314
label: phosphocreatine biosynthetic process
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: The biological process corresponding to the forward (ATP -> phosphocreatine)
direction of the creatine kinase reaction. Core process for CKB. Accept.
action: ACCEPT
reason: Directly reflects the physiological left-to-right reaction direction
catalyzed by CKB; consistent with the experimentally demonstrated activity.
- term:
id: GO:0003824
label: catalytic activity
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: enables
review:
summary: Generic root catalytic-activity term assigned by InterPro2GO. Correct
but uninformative; subsumed by the specific creatine kinase activity annotation.
action: MARK_AS_OVER_ANNOTATED
reason: A high-level ancestor of GO:0004111; adds no information beyond the
specific molecular function and should not be retained as a meaningful
annotation.
- term:
id: GO:0004111
label: creatine kinase activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: enables
review:
summary: Electronic (IEA) assignment of the core creatine kinase activity,
consistent with experimental evidence. Accept (redundant with the experimental
annotation but correct).
action: ACCEPT
reason: Same correct core molecular function; electronic support via RHEA/EC
mapping aligns with direct evidence.
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: located_in
review:
summary: Electronic mitochondrion localization transferred by similarity from the
mouse ortholog (Q04447) in the context of thermogenic-fat / futile-creatine-cycle
biology. Human CKB is predominantly cytosolic; a mitochondrial pool is not
directly demonstrated for human B-CK.
action: MARK_AS_OVER_ANNOTATED
reason: B-CK is the cytosolic creatine kinase isoform; mitochondrial creatine
kinase is a distinct gene product (uMtCK/CKMT1). The mitochondrial call is a
by-similarity transfer specific to adipocyte thermogenesis and is not the core
localization of human CKB.
- term:
id: GO:0005829
label: cytosol
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: Electronic cytosol localization from the UniProt subcellular-location
mapping. Correct core localization. Accept.
action: ACCEPT
reason: B-CK is a cytosolic enzyme; consistent with IDA (HPA) and Reactome TAS
annotations to cytosol.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: Electronic plasma-membrane call from UniProt subcellular-location
mapping, reflecting peripheral recruitment of B-CK to membrane ATPase
microcompartments (e.g. with KCC3). Real but peripheral, not the core compartment.
action: KEEP_AS_NON_CORE
reason: CKB is not an integral membrane protein; it is recruited to the membrane
to supply ATP to transporters such as KCC3 (PMID:18566107). Retain as a
non-core peripheral localization.
- term:
id: GO:0016301
label: kinase activity
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: enables
review:
summary: Generic kinase-activity parent from InterPro2GO; subsumed by the
specific creatine kinase activity. Uninformative.
action: MARK_AS_OVER_ANNOTATED
reason: Ancestor of GO:0004111; carries no information beyond the specific
molecular function.
- term:
id: GO:0016772
label: transferase activity, transferring phosphorus-containing groups
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: enables
review:
summary: Generic phosphotransferase parent from InterPro2GO; subsumed by the
specific creatine kinase activity. Uninformative.
action: MARK_AS_OVER_ANNOTATED
reason: High-level ancestor of GO:0004111; redundant generic term.
- term:
id: GO:0016775
label: phosphotransferase activity, nitrogenous group as acceptor
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: enables
review:
summary: The immediate parent class of creatine kinase activity (phosphotransfer
to a nitrogenous/guanidino acceptor). Correct but redundant with the specific
term.
action: MARK_AS_OVER_ANNOTATED
reason: Direct ancestor of GO:0004111; the specific creatine kinase activity term
is preferred and makes this generic term redundant.
- term:
id: GO:0046314
label: phosphocreatine biosynthetic process
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: involved_in
review:
summary: Electronic assignment of the core phosphocreatine biosynthetic process,
consistent with experimental evidence. Accept.
action: ACCEPT
reason: Correct core process for CKB; redundant with the IDA/IBA annotations but
not erroneous.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16189514
qualifier: enables
review:
summary: Generic 'protein binding' from a high-throughput interactome screen.
Uninformative as a molecular function; the biologically meaningful interactions
are captured by more specific annotations.
action: KEEP_AS_NON_CORE
reason: Bare protein binding does not describe a function; retained as non-core
evidence of interaction only.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:19060904
qualifier: enables
review:
summary: Generic 'protein binding' from a high-throughput binary interactome.
Uninformative molecular function.
action: KEEP_AS_NON_CORE
reason: Bare protein binding is not a core function; retained as non-core.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:19264780
qualifier: enables
review:
summary: Interaction with hepatitis C virus NS4A, recruiting CKB to the viral
replication complex. A genuine moonlighting interaction but represented only as
generic 'protein binding'.
action: KEEP_AS_NON_CORE
reason: Biologically real host-factor interaction (PMID:19264780) but a
non-core, condition-specific role; the bare term is uninformative as a core
function.
supported_by:
- reference_id: PMID:19264780
supporting_text: CKB interacts with HCV NS4A protein and forms a complex with
NS3-4A, which possesses multiple enzyme activities.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:21145461
qualifier: enables
review:
summary: Generic 'protein binding' from a cullin-RING ligase network proteomic
study (CUL3 association). Uninformative as a function.
action: KEEP_AS_NON_CORE
reason: Bare protein binding; relates to CKB's role as a CRL substrate, retained
as non-core.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:25416956
qualifier: enables
review:
summary: Generic 'protein binding' from a high-throughput interactome map.
Uninformative molecular function.
action: KEEP_AS_NON_CORE
reason: Bare protein binding is not a core function; retained as non-core.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:28514442
qualifier: enables
review:
summary: Generic 'protein binding' from a BioPlex interactome (includes CKM and
ASB9 partners). Uninformative as a standalone function.
action: KEEP_AS_NON_CORE
reason: Bare protein binding; the meaningful partners (CKM dimerization, ASB9 E3
ligase) are better captured specifically. Retained as non-core.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:32296183
qualifier: enables
review:
summary: Generic 'protein binding' from the HuRI binary interactome (ASB9).
Uninformative molecular function.
action: KEEP_AS_NON_CORE
reason: Bare protein binding is not a core function; retained as non-core.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:33961781
qualifier: enables
review:
summary: Generic 'protein binding' from a dual proteome-scale interactome (CKM,
ASB9). Uninformative molecular function.
action: KEEP_AS_NON_CORE
reason: Bare protein binding is not a core function; retained as non-core.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:35271311
qualifier: enables
review:
summary: Generic 'protein binding' from the OpenCell endogenous-tagging map.
Uninformative molecular function.
action: KEEP_AS_NON_CORE
reason: Bare protein binding is not a core function; retained as non-core.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:37207277
qualifier: enables
review:
summary: Generic 'protein binding' from a brain cell-type interactome (TCF4,
CUL3). Uninformative molecular function.
action: KEEP_AS_NON_CORE
reason: Bare protein binding is not a core function; retained as non-core.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:40205054
qualifier: enables
review:
summary: Generic 'protein binding' from a multimodal cell-map interactome (ASB9).
Uninformative molecular function.
action: KEEP_AS_NON_CORE
reason: Bare protein binding is not a core function; retained as non-core.
- term:
id: GO:0140651
label: futile creatine cycle
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: Electronic transfer (from mouse Q04447) of involvement in the futile
creatine cycle (adipocyte thermogenesis). This role is characterized for the
thermogenic-fat mitochondrial creatine cycle and has not been demonstrated for
human B-CK; retain as a non-core, by-similarity possibility.
action: KEEP_AS_NON_CORE
reason: The futile creatine cycle is a specialized thermogenic-fat process
inferred by orthology; it is plausible but not the core energy-buffering
function of cytosolic B-CK in humans.
- term:
id: GO:0005829
label: cytosol
evidence_type: IDA
original_reference_id: GO_REF:0000052
qualifier: located_in
review:
summary: Direct immunofluorescence (HPA) localization to the cytosol. This is the
core, experimentally supported localization of B-CK. Accept.
action: ACCEPT
reason: B-CK is a cytosolic enzyme; IDA from HPA directly supports the core
localization.
- term:
id: GO:0005739
label: mitochondrion
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: located_in
review:
summary: ISS mitochondrion localization transferred from mouse Q04447
(thermogenic-fat creatine cycle). Not the core compartment of human cytosolic
B-CK.
action: MARK_AS_OVER_ANNOTATED
reason: By-similarity mitochondrial localization tied to adipocyte thermogenesis;
human B-CK is the cytosolic isoform and a mitochondrial pool is not directly
established.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: EXP
original_reference_id: PMID:18566107
qualifier: located_in
review:
summary: Experimental co-localization of CK-B with KCC3 at the plasma membrane,
consistent with recruitment of B-CK to membrane ATPase microcompartments.
Real but peripheral, not the core cytosolic compartment.
action: KEEP_AS_NON_CORE
reason: CKB associates with the membrane via interaction with the KCC3
transporter to supply ATP locally; it is not an integral membrane protein.
Retain as a non-core peripheral localization.
supported_by:
- reference_id: PMID:18566107
supporting_text: immunofluorescence labeling showed that CK-B co-localizes with
wild-type KCC3
- term:
id: GO:0004111
label: creatine kinase activity
evidence_type: IDA
original_reference_id: PMID:8186255
qualifier: enables
review:
summary: Direct experimental evidence (site-directed mutagenesis of human B-CK)
for creatine kinase activity, including identification of essential catalytic
residues. The strongest support for the core molecular function. Accept.
action: ACCEPT
reason: Direct assay of human CKB enzymatic activity; defines the core molecular
function (EC 2.7.3.2).
supported_by:
- reference_id: PMID:8186255
supporting_text: The results showed residues Cys-283 and Arg-292 are essential
for enzyme catalysis.
- term:
id: GO:0046314
label: phosphocreatine biosynthetic process
evidence_type: IDA
original_reference_id: PMID:8186255
qualifier: involved_in
review:
summary: Direct evidence for the phosphocreatine-forming (forward) direction of
the creatine kinase reaction. Core process for CKB. Accept.
action: ACCEPT
reason: Reflects the physiological left-to-right reaction catalyzed by CKB,
directly demonstrated for the human enzyme.
- term:
id: GO:0004111
label: creatine kinase activity
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: enables
review:
summary: ISS support (from ortholog) for the core creatine kinase activity.
Consistent with direct evidence. Accept.
action: ACCEPT
reason: Correct core molecular function; redundant with the experimental
annotation but not erroneous.
- term:
id: GO:0005739
label: mitochondrion
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: is_active_in
review:
summary: ISS 'is_active_in mitochondrion' transferred from mouse Q04447. Human
B-CK is the cytosolic isoform; an active mitochondrial pool is not directly
established.
action: MARK_AS_OVER_ANNOTATED
reason: By-similarity mitochondrial activity tied to thermogenic-fat biology;
not the core localization or site of activity of human cytosolic B-CK.
- term:
id: GO:0070062
label: extracellular exosome
evidence_type: HDA
original_reference_id: PMID:11487543
qualifier: located_in
review:
summary: High-throughput proteomic detection of CKB in exosomes. A real
observation but reflects passive secretion/vesicle loading rather than a
functional compartment.
action: KEEP_AS_NON_CORE
reason: Exosome detection is common for abundant cytosolic enzymes; retain as a
non-core localization, not a site of creatine kinase function.
- term:
id: GO:0005576
label: extracellular region
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: located_in
review:
summary: ISS extracellular-region localization transferred from an ortholog.
B-CK is a cytosolic enzyme; extracellular detection (exosomes/secretome) does
not establish a functional extracellular localization.
action: MARK_AS_OVER_ANNOTATED
reason: Over-propagated localization for a cytosolic enzyme; not a site of
activity. Exosomal detection is better captured by the exosome annotation.
- term:
id: GO:0031625
label: ubiquitin protein ligase binding
evidence_type: IPI
original_reference_id: PMID:19725078
qualifier: enables
review:
summary: CKB binds an E3 ubiquitin ligase component (Parkin/E3 interactant
proteomics), consistent with CKB being a substrate of the ECS(ASB9)
Cullin-RING E3 ligase that targets it for degradation. A real binding activity
but reflecting CKB's role as a degradation substrate rather than a core enzyme
function.
action: KEEP_AS_NON_CORE
reason: Informative interaction (E3 ligase/degradation axis) but not part of
CKB's core energy-metabolism function; retain as non-core.
- term:
id: GO:0070062
label: extracellular exosome
evidence_type: HDA
original_reference_id: PMID:23533145
qualifier: located_in
review:
summary: High-throughput proteomic detection of CKB in prostatic-secretion
exosomes. Same interpretation as other exosome detections.
action: KEEP_AS_NON_CORE
reason: Proteomic exosome detection; non-core localization, not a functional
compartment for catalysis.
- term:
id: GO:0021762
label: substantia nigra development
evidence_type: HEP
original_reference_id: PMID:22926577
qualifier: involved_in
review:
summary: HEP annotation derived from a disease-state differential-abundance
proteomic survey of human substantia nigra. Differential expression in
neurodegenerative disease does not establish a role in substantia nigra
development.
action: MARK_AS_OVER_ANNOTATED
reason: The supporting study compares protein abundance in disease vs control
substantia nigra; it does not provide evidence that CKB is involved in the
developmental process. Over-interpretation of an expression observation.
- term:
id: GO:0070062
label: extracellular exosome
evidence_type: HDA
original_reference_id: PMID:19056867
qualifier: located_in
review:
summary: High-throughput proteomic detection of CKB in urinary exosomes. Same
interpretation as other exosome detections.
action: KEEP_AS_NON_CORE
reason: Proteomic exosome detection; non-core localization.
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-200318
qualifier: located_in
review:
summary: Traceable author statement (Reactome) placing the creatine kinase
reaction in the cytosol. Consistent with the core cytosolic localization.
Accept.
action: ACCEPT
reason: Correct core localization; the creatine kinase reaction catalyzed by CKB
occurs in the cytosol.
- term:
id: GO:0004111
label: creatine kinase activity
evidence_type: TAS
original_reference_id: PMID:3034271
qualifier: enables
review:
summary: Traceable author statement (original CKB cDNA cloning paper) for
creatine kinase activity. Core molecular function. Accept.
action: ACCEPT
reason: Correct core molecular function, supported by the foundational
cloning/characterization reference.
core_functions:
- description: >-
B-type cytosolic creatine kinase reversibly transfers the high-energy phosphoryl
group between ATP and creatine (creatine + ATP = N-phosphocreatine + ADP + H+),
acting in the cytosol to interconvert ATP and the phosphocreatine energy
reservoir. The forward direction generates phosphocreatine (phosphocreatine
biosynthetic process), buffering cellular ATP in brain and non-muscle tissues.
molecular_function:
id: GO:0004111
label: creatine kinase activity
directly_involved_in:
- id: GO:0046314
label: phosphocreatine biosynthetic process
locations:
- id: GO:0005829
label: cytosol
supported_by:
- reference_id: PMID:8186255
supporting_text: The results showed residues Cys-283 and Arg-292 are essential
for enzyme catalysis.
suggested_questions:
- question: Does human cytosolic B-CK have any direct, functionally relevant
mitochondrial or futile-creatine-cycle role, or are the mitochondrion/futile-cycle
annotations entirely by-similarity from the mouse thermogenic-fat ortholog?
- question: How general is the role of B-CK as an ATP-supplying partner physically
coupled to membrane ATPases/transporters (e.g. KCC2/KCC3) across tissues, and is
its kinase activity strictly required for transporter function?
suggested_experiments:
- description: Determine the subcellular distribution of endogenous human B-CK
(cytosol vs mitochondrion vs membrane microcompartments) across brain, smooth
muscle, and adipose tissue using fractionation and quantitative imaging, to test
whether any mitochondrial/futile-cycle role exists for the human protein.
hypothesis: Human B-CK is overwhelmingly cytosolic, with membrane and mitochondrial
pools being minor and context-specific.
- description: Reconstitute B-CK with KCC2/KCC3 in a controlled system and measure
cotransport activity with catalytically active versus catalytically dead B-CK to
test whether local ATP regeneration, rather than mere binding, drives transporter
activation.
hypothesis: B-CK kinase activity is required to sustain KCC transporter activity by
locally regenerating ATP at the membrane microcompartment.