CNGA3

UniProt ID: Q16281
Organism: Homo sapiens
Review Status: DRAFT
πŸ“ Provide Detailed Feedback

Gene Description

CNGA3 is the ligand-binding and pore-forming alpha subunit of the cone photoreceptor cyclic nucleotide-gated cation channel. It assembles with CNGB3 in cone outer-segment membranes, where intracellular cGMP promotes cation entry; light-driven loss of cGMP closes the channel and contributes to the cone electrical response. Human reconstituted complexes contain three CNGA3 subunits and one CNGB3. CNGA3 can also form conductive homomers and respond less effectively to cAMP. Biallelic CNGA3 variants cause achromatopsia and related cone dysfunction. Ortholog studies additionally report neuronal, glial and sensory-tissue expression and context-dependent protein interactions.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0005216 monoatomic ion channel activity
IEA
GO_REF:0000002
MODIFY
Summary: CNGA3 forms cGMP-gated cation-conducting channels.
Reason: The ion-transport domain mapping is correct but broad. Human CNGA3 homomers and CNGA3/CNGB3 heteromers produce ligand-evoked currents, and purified human heteromers retain cGMP activation after lipid reconstitution. The specific cGMP-gated activity captures the principal physiological capability.
Supporting Evidence:
GO_REF:0000002
GO:0005221 intracellularly cyclic nucleotide-activated monoatomic cation channel activity
IEA
GO_REF:0000002
MODIFY
Summary: cGMP is the principal activating ligand of the cone channel.
Reason: Human functional measurements and ligand-bound structures support the cGMP-specific child of the cyclic-nucleotide-gated channel term. The separate positive cAMP capability is retained in its own rows; this refinement does not deny secondary agonism.
Supporting Evidence:
GO_REF:0000002
GO:0005222 intracellularly cAMP-activated cation channel activity
IBA
GO_REF:0000033
KEEP AS NON CORE
Summary: cAMP can activate CNGA3-containing channels.
Reason: The original human expression experiments detect cAMP activation of both CNGA3 homomers and CNGA3/CNGB3 heteromers, with lower potency and efficacy than cGMP. This supports the transferred capability as secondary agonist scope. The historical PAINT node placement was not reconstructed; target self-inclusion and the number of listed descendants are not objections to the transfer.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
PANTHER:PTN000025806 UNRESOLVED
Human cAMP activation corroborates this secondary ligand capability; historical IBD placement is not reconstructed.
Supporting Evidence:
GO_REF:0000033
GO:0005222 intracellularly cAMP-activated cation channel activity
IDA
PMID:12815043
Achromatopsia-associated mutation in the human cone photorec...
KEEP AS NON CORE
Summary: Human CNGA3 channels have experimentally measured cAMP responses.
Reason: The original study compares human CNGA3 alone with wild-type and mutant CNGB3 combinations in Xenopus oocytes. Wild-type homomers and heteromers both respond to cAMP, although less effectively than to cGMP. Retain that real activity without making cAMP the defining physiological ligand or assigning CNGB3-mutant behavior to wild-type CNGA3. The abstract anchor describes the mutant-versus-wild-type ligand comparison; the independently inspected external Results establish the wild-type homomer and heteromer controls.
Supporting Evidence:
PMID:12815043
affinity for both cAMP and cGMP
GO:0005223 intracellularly cGMP-activated cation channel activity
IBA
GO_REF:0000033
ACCEPT
Summary: Conserved cGMP-gated channel activity is directly corroborated in human CNGA3.
Reason: Human expression, purified-channel reconstitution and cGMP-bound structures independently support the activity inherited from PTN000811708. These target experiments corroborate the biological judgment without reconstructing every historical IBD premise or changing the original source relationship.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
PANTHER:PTN000811708 UNRESOLVED
Human cGMP currents corroborate the inherited activity; historical IBD placement is not reconstructed.
Supporting Evidence:
GO_REF:0000033
GO:0005223 intracellularly cGMP-activated cation channel activity
IDA
PMID:12815043
Achromatopsia-associated mutation in the human cone photorec...
ACCEPT
Summary: Human CNGA3 supplies functional cGMP-gated channel subunits.
Reason: Actual Methods and Results assay human CNGA3 homomers and CNGA3/CNGB3 heteromers in Xenopus oocytes. Intracellular cGMP activates membrane currents; the physiological heteromeric channel and experimentally conductive homomer are distinguished.
Supporting Evidence:
PMID:12815043
homomeric hCNGA3 channels
GO:0005223 intracellularly cGMP-activated cation channel activity
IEA
GO_REF:0000107
ACCEPT
Summary: The rat ortholog has a direct cGMP-activated current premise.
Reason: Current Q9ER33 records include IDA from PMID:11387380. Its complete abstract explicitly describes cloned rat gustatory CNGA3 expressed in Xenopus oocytes and direct cGMP activation; independent human experiments corroborate the conserved activity. This is not an inference that all human alternative products were tested.
Supporting Evidence:
GO_REF:0000107
GO:0005223 intracellularly cGMP-activated cation channel activity
IMP
PMID:24164424
Cyclic nucleotide-gated channel subunit glycosylation regula...
ACCEPT
Summary: Human CNGA3-containing channels conduct current in response to cGMP.
Reason: The study uses tagged human CNGA3 with or without human CNGB3 in Xenopus oocytes, including wild-type controls and the CNGA3 N339Q glycosylation mutant. Inside-out recordings establish cGMP-evoked currents and changes after MMP exposure. Proteolysis is performed by MMPs; it is not a catalytic activity of CNGA3.
Supporting Evidence:
PMID:24164424
We assessed CNG channel gating properties by measuring cGMP dose-response relationships
GO:0005515 protein binding
IPI
PMID:32296183
A reference map of the human binary protein interactome.
KEEP AS NON CORE
Summary: HuRI records a positive CNGA3–MIS18A interaction.
Reason: Three exact human IntAct records identify Q16281 with Q9NYP9/MIS18A in array, prey-pooling and validated two-hybrid assays. CNGA3 is the prey in the first two records; the validated record assigns neutral roles. Retain the measured interaction as non-core without inferring an endogenous centromeric function, adaptor activity or shared native compartment.
Supporting Evidence:
GO:0005886 plasma membrane
IBA
GO_REF:0000033
ACCEPT
Summary: Plasma-membrane activity is consistent with the conserved channel role.
Reason: Human expression experiments combine surface fluorescence with currents recorded from excised membrane patches. Mouse cone localization independently places the protein in outer-segment membrane folds. These observations corroborate the PAINT compartment; the historical ancestral placement itself remains uninspected.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
PANTHER:PTN000811708 UNRESOLVED
Human surface localization and mouse outer-segment membranes corroborate the compartment; historical node placement remains uninspected.
Supporting Evidence:
GO_REF:0000033
GO:0005886 plasma membrane
IDA
PMID:12815043
Achromatopsia-associated mutation in the human cone photorec...
ACCEPT
Summary: Expressed human CNGA3 reaches the plasma membrane.
Reason: The original study measures GFP-tagged human CNGA3 at the oocyte surface with non-tagged controls and separately records functional membrane currents. CNGB3 coexpression changes surface fluorescence without substantially changing total CNGA3 protein in the tested comparison. Tags, expression ratios and disease mutants are not assumed to represent every natural product.
Supporting Evidence:
PMID:12815043
expression of green fluorescent protein-tagged hCNGA3 subunits
GO:0005886 plasma membrane
IEA
GO_REF:0000044
ACCEPT
Summary: The UniProt cell-membrane mapping is biologically supported.
Reason: CNGA3 is an integral membrane channel subunit, and surface imaging and membrane-patch currents directly support the mapped plasma-membrane compartment.
Supporting Evidence:
GO_REF:0000044
GO:0006811 monoatomic ion transport
IEA
GO_REF:0000002
MODIFY
Summary: The transported species are cations crossing a membrane.
Reason: Human channel recordings and purified-channel reconstitution establish transmembrane cation conduction. The specific process preserves both the transported-ion class and membrane crossing that are absent from the broad InterPro ion-transport mapping.
Supporting Evidence:
GO_REF:0000002
GO:0006812 monoatomic cation transport
IMP
PMID:24164424
Cyclic nucleotide-gated channel subunit glycosylation regula...
MODIFY
Summary: The original experiment measures transmembrane cation current.
Reason: Human CNGA3-containing channels in excised oocyte patches carry current in sodium-based solutions, with cGMP-dependent gating and MMP-dependent changes. Refine broad cation transport to cation transmembrane transport; calcium used to support MMP activity is not itself a calcium-permeation measurement.
Supporting Evidence:
GO:0007165 signal transduction
TAS
PMID:9517456
Cloning, chromosomal localization and functional expression ...
MODIFY
Summary: CNGA3 performs the cGMP-controlled channel step of cone phototransduction.
Reason: The original human clone produces cGMP-activated currents and is expressed in retinal cones. Later human structures and reconstituted currents identify the performed effector step: CNGA3 supplies ligand-recognition and pore elements that change cation conductance as phototransduction changes cGMP. Phototransduction specifies this signaling context without asserting that CNGA3 absorbs photons. The original broad TAS source assertion remains unchanged.
Proposed replacements: phototransduction
GO:0007601 visual perception
IMP
PMID:10958649
Mutations in the CNGB3 gene encoding the beta-subunit of the...
UNDECIDED
Summary: The exact CNGA3 IMP linkage to this clinical paper remains unresolved.
Reason: The recovered original Methods and selected Results study CNGB3 in achromatopsia families after excluding CNGA3 mutations or linkage; the paper also discusses previously established CNGA3 visual function. Those inspected passages do not establish the particular CNGA3 perturbation underlying this source object. Preserve the source-specific uncertainty without declaring the whole paper miscited or disputing the independently demonstrated CNGA3 visual role.
Supporting Evidence:
GO:0007601 visual perception
IMP
PMID:11536077
CNGA3 mutations in hereditary cone photoreceptor disorders.
ACCEPT
Summary: Human CNGA3 defects impair cone-mediated vision.
Reason: The original human mutation cohort combines clinical visual testing, ERGs, sequence analysis and segregation. Complete and incomplete achromatopsia and some cone-dystrophy presentations establish the visual consequence of CNGA3 dysfunction. This supports the sensory role without attributing every variant to the same molecular defect.
Supporting Evidence:
GO:0007601 visual perception
IMP
PMID:15712225
Cone cGMP-gated channel mutations and clinical findings in p...
ACCEPT
Summary: The clinical source positively links CNGA3 variants to cone dysfunction.
Reason: The complete authentic abstract explicitly reports CNGA3 mutations in 12 of 36 achromats and accompanying acuity, color-vision and ERG findings. The original full body was not recovered; the positive human observation and independent full CNGA3 cohort support retention without inventing patient-level or assay details.
Supporting Evidence:
GO:0007601 visual perception
TAS
PMID:9662398
Total colourblindness is caused by mutations in the gene enc...
ACCEPT
Summary: CNGA3 is required for normal cone color vision.
Reason: The original complete abstract identifies segregating CNGA3 missense mutations in five families with complete achromatopsia, preserved rod responses and absent cone responses. Later functional studies identify the channel activity performed by CNGA3. The abstract-level access limit does not negate this explicitly reported positive result.
Supporting Evidence:
GO:0015276 ligand-gated monoatomic ion channel activity
TAS
PMID:9517456
Cloning, chromosomal localization and functional expression ...
MODIFY
Summary: The ligand-gated activity can be specified as cGMP-gated.
Reason: The original cloning abstract directly reports cGMP-activated currents from human CNGA3 in Xenopus oocytes. Later functional and structural sources corroborate this precise activity.
Supporting Evidence:
GO:0016020 membrane
IEA
GO_REF:0000002
MODIFY
Summary: Human CNGA3 reaches the plasma membrane.
Reason: The broad membrane mapping can be refined using human surface imaging and functional membrane-patch recordings. The six-transmembrane architecture is consistent with this compartment; the original InterPro source object remains unchanged. The direct human surface-expression scope is retained; convergence with existing plasma-membrane assertions is allowed for MODIFY and is not a reason to replace this evidence with a more specific mouse compartment by default.
Proposed replacements: plasma membrane
Supporting Evidence:
GO_REF:0000002
GO:0017022 myosin binding
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: The rat donor directly binds the myosin VIIa tail.
Reason: The actual rat study uses CNGA3 residues 1–146, rat organ-of-Corti constructs, GST pulldown and surface plasmon resonance with the myosin VIIa tail. These assays support the donor binding premise, including calcium-dependent changes. Retain the ortholog transfer as non-core; fragment binding does not establish human native hair-cell mechanotransduction or all-product interactions.
Supporting Evidence:
GO_REF:0000107
GO:0017071 intracellular cyclic nucleotide activated cation channel complex
IBA
GO_REF:0000033
ACCEPT
Summary: CNGA3 contributes to the cyclic-nucleotide-activated channel complex.
Reason: Functional human CNGA3/CNGB3 coexpression and purified human structures corroborate complex membership. The full-length structural preparation contains three CNGA3 subunits and one CNGB3; that structural count is distinct from expression-plasmid or RNA ratios. The PAINT historical node was not independently reconstructed.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
PANTHER:PTN000811708 UNRESOLVED
Human assembled-channel measurements corroborate the complex; the historical family placement remains uninspected.
Supporting Evidence:
GO_REF:0000033
PMID:34969976
three A3 subunits and one B3 subunit
GO:0017071 intracellular cyclic nucleotide activated cation channel complex
IDA
PMID:12815043
Achromatopsia-associated mutation in the human cone photorec...
ACCEPT
Summary: Human CNGA3 assembles with CNGB3 into functional channels.
Reason: The original study compares homomeric CNGA3 with wild-type and mutant CNGB3 coexpression, measuring distinct ligand responses, rectification and surface behavior. These data support the specific complex; later structures resolve its composition without converting the old RNA mixing ratio into a stoichiometric measurement. The abstract anchor is a positive result for the S435F-containing heteromer; wild-type heteromers are the comparison. The independently inspected original Results establish the wild-type assembly context.
Supporting Evidence:
PMID:12815043
generated functional heteromeric channels
GO:0030425 dendrite
IEA
GO_REF:0000107
UNDECIDED
Summary: The precise dendritic localization premise needs the original imaging.
Reason: The live rat Q9ER33 donor has an IDA dendrite record from PMID:18434027, and the complete abstract positively reports CNGA3 in several olfactory-bulb neuronal populations. Full original Methods and subcellular panels were not recovered after publisher and repository searches, so the exact dendritic result and its transfer remain unverified here. This is an access limit, not evidence of absence.
Propagation Review
Root cause: UNRESOLVED
Sources checked:
UniProtKB:Q9ER33 Β· Rat Cnga3 UNRESOLVED
The current exact donor annotation is recovered; the source-specific full-text compartment or historical reagent identity is not independently resolved.
Supporting Evidence:
GO_REF:0000107
GO:0030553 cGMP binding
IBA
GO_REF:0000033
ACCEPT
Summary: CNGA3 has a directly resolved cGMP-binding pocket.
Reason: The PAINT binding assertion is corroborated by human CNGA3 cGMP density in the cytoplasmic cyclic-nucleotide-binding domains of assembled channels. Ligand occupancy can occur in closed as well as open states, so binding and pore opening are distinguished; the historical node placement was not reconstructed.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
PANTHER:PTN000025806 UNRESOLVED
Human cGMP pocket density corroborates ligand binding; the historical node placement remains uninspected.
Supporting Evidence:
GO_REF:0000033
GO:0030553 cGMP binding
IDA
PMID:37463923
Conformational trajectory of allosteric gating of the human ...
ACCEPT
Summary: Human CNGA3 directly contacts cGMP in the assembled channel.
Reason: The structural study resolves cGMP in the CNGA3 binding pockets. Full-length detergent preparations and engineered N-terminally truncated nanodisc preparations are separately described; the latter are not natural alternative products. This is physical ligand-binding evidence rather than an activation-curve affinity estimate alone.
Supporting Evidence:
PMID:37463923
cGMP is bound to all four subunits
GO:0030553 cGMP binding
IEA
GO_REF:0000107
ACCEPT
Summary: The rat transfer of cGMP recognition is corroborated by human structure.
Reason: The current rat donor cites direct cGMP activation in PMID:11387380. Functional activation alone does not provide a purified binding constant, but independent human CNGA3 structures directly place cGMP in the binding pocket and support the conserved molecular recognition.
Supporting Evidence:
GO_REF:0000107
GO:0030553 cGMP binding
IMP
PMID:24164424
Cyclic nucleotide-gated channel subunit glycosylation regula...
ACCEPT
Summary: The mutant-based binding inference agrees with independent structural evidence.
Reason: The original human-channel experiments measure cGMP dose-response shifts after MMP treatment and glycosylation perturbation. Their half-activation concentration combines binding and gating and is not a purified dissociation constant. Direct cGMP density in later human CNGA3 structures independently supports retaining the binding capability.
Supporting Evidence:
PMID:24164424
apparent affinity for cGMP
GO:0032026 response to magnesium ion
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: Magnesium modulates the rat CNGA3 channel current.
Reason: The exact RGD donor IDA records rat tongue-derived CNGA3 expressed in Xenopus oocytes, with magnesium-dependent inhibition of channel-mediated sodium current from either membrane side. CNGA3 conducts the current whose change is measured. The response definition does not require an adaptive or homeostatic mechanism, so this existing experimental premise is retained as contextual, non-core regulation. Original full Methods and figures remain uninspected; the abstract does not establish a physiological human response, magnesium permeation or an automatic rule that every inhibited protein merits a response annotation.
Supporting Evidence:
GO_REF:0000107
GO:0034220 monoatomic ion transmembrane transport
IEA
GO_REF:0000107
MODIFY
Summary: CNGA3 mediates cation transmembrane conduction.
Reason: Rat donor recordings show cyclic-nucleotide-evoked cation currents, and human channel measurements independently specify cation conduction. Refine the broad ion-transmembrane term to its cation-specific form without changing the original Ensembl source.
Supporting Evidence:
GO_REF:0000107
GO:0042622 photoreceptor outer segment membrane
ISS
GO_REF:0000024
ACCEPT
Summary: The mouse ortholog localizes to cone outer-segment membranes.
Reason: The official MGI donor is mouse Cnga3. Actual antibody-controlled mouse immunolabeling and pre-embedding EM place the signal in outer-segment membrane folds. Preserve the ISS inference rather than describing this as an endogenous human localization experiment.
Supporting Evidence:
GO_REF:0000024
GO:0042622 photoreceptor outer segment membrane
ISS
GO_REF:0000024
ACCEPT
Summary: The sequence-resolved mouse donor supports outer-segment membrane localization.
Reason: Q9JJZ8 identifies mouse Cnga3, consistent with the official MGI donor. The original study tests a cloned 631-residue mouse construct and a C-terminal antibody with transfected-cell specificity controls; native retinal EM provides the membrane premise. These historical mouse constructs do not define the distribution of every human alternative product.
Supporting Evidence:
GO_REF:0000024
GO:0043025 neuronal cell body
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: Rat olfactory-bulb neurons provide a positive cell-body localization context.
Reason: The current donor has an IDA neuronal-cell-body record from PMID:18434027, whose complete abstract explicitly reports CNGA3 immunoreactivity in principal neurons and interneurons. Retain this non-core ortholog context while noting that detailed original imaging controls and endogenous human subcellular localization were not independently inspected.
Supporting Evidence:
GO_REF:0000107
GO:0043194 axon initial segment
IEA
GO_REF:0000107
UNDECIDED
Summary: The axon-initial-segment assertion remains source-limited.
Reason: The current rat donor preserves a genuine IDA premise from PMID:18434027. The accessible abstract establishes neuronal expression but does not resolve the precise axon-initial-segment labeling or its controls, and the full original article was not recovered. Retain uncertainty without treating the cone-channel specialization as evidence against neuronal localization.
Propagation Review
Root cause: UNRESOLVED
Sources checked:
UniProtKB:Q9ER33 Β· Rat Cnga3 UNRESOLVED
The current exact donor annotation is recovered; the source-specific full-text compartment or historical reagent identity is not independently resolved.
Supporting Evidence:
GO_REF:0000107
GO:0043204 perikaryon
IEA
GO_REF:0000107
UNDECIDED
Summary: The exact historical channel identity behind this perikaryon transfer is unresolved.
Reason: The rat donor points to PMID:12021210. Its complete abstract reports olfactory CNG2, CNG4.3 and CNG5 in rat GnRH perikarya, using historical nomenclature. Original full probe and antibody details were not recovered, so a CNGA3-specific premise cannot be verified from those names alone. Preserve the source object without claiming a demonstrated paralog error.
Propagation Review
Root cause: UNRESOLVED
Sources checked:
UniProtKB:Q9ER33 Β· Rat Cnga3 UNRESOLVED
The current exact donor annotation is recovered; the source-specific full-text compartment or historical reagent identity is not independently resolved.
Supporting Evidence:
GO_REF:0000107
GO:0045296 cadherin binding
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: Rat CNGA3 directly binds the exon-68-containing cadherin 23 fragment.
Reason: The original rat study confirms the interaction by two-hybrid reversal and empty-vector controls, GST pulldown and surface plasmon resonance. CDH23 lacking exon 68 does not show the same binding. Retain the specific donor capability with its fragment and calcium dependence; neither a human full-length interaction nor a direct adhesion activity follows automatically.
Supporting Evidence:
GO_REF:0000107
GO:0051591 response to cAMP
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: cAMP directly activates the rat donor channel under experimental conditions.
Reason: The donor IDA source explicitly measures cAMP-evoked currents, and human CNGA3-containing channels independently exhibit lower-efficacy cAMP agonism. This supports the response capability as non-core; it does not establish cAMP as the principal physiological cone signal.
Supporting Evidence:
GO_REF:0000107
GO:0055085 transmembrane transport
IEA
GO_REF:0000002
MODIFY
Summary: Cation conduction specifies the broad transmembrane-transport mapping.
Reason: Functional human CNGA3-containing channels carry cation currents through a membrane. The specific cation transmembrane transport term preserves the direct performed transport step rather than adding an unrelated process.
Supporting Evidence:
GO_REF:0000002
GO:0060041 retina development in camera-type eye
IBA
GO_REF:0000033
KEEP AS NON CORE
Summary: The retinal-development transfer is retained as a downstream tissue context.
Reason: The official mouse record contains experimental IGI premises from PMID:21124780 and a cone-development IMP premise associated with the cpfl5 model. The inspected triple-mutant study examines adult photoreception and cone-transducin localization, while the model-resource table lists Cnga3 cone-function loss. These positive retinal contexts do not establish a separate CNGA3-directed patterning mechanism. Preserve the curated PAINT judgment as non-core; the historical PTN002900733 placement was not reconstructed.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
PANTHER:PTN002900733 UNRESOLVED
Official mouse experimental retinal premises are recovered, but the historical developmental IBD placement and its exact rationale remain uninspected.
Supporting Evidence:
GO_REF:0000033
GO:0097386 glial cell projection
IEA
GO_REF:0000107
UNDECIDED
Summary: The exact glial-projection compartment requires the original localization evidence.
Reason: The current rat donor has an IDA glial-cell-projection annotation, and the original abstract positively reports CNGA3 in olfactory ensheathing glia. Full original subcellular images were not recovered, so this finer compartment and its transfer remain unverified in this review. No absence of glial expression is inferred.
Propagation Review
Root cause: UNRESOLVED
Sources checked:
UniProtKB:Q9ER33 Β· Rat Cnga3 UNRESOLVED
The current exact donor annotation is recovered; the source-specific full-text compartment or historical reagent identity is not independently resolved.
Supporting Evidence:
GO_REF:0000107
GO:0098655 monoatomic cation transmembrane transport
IBA
GO_REF:0000033
ACCEPT
Summary: CNGA3 performs cation transmembrane transport as part of a gated channel.
Reason: Human expression and purified-channel reconstitution provide direct cation-current evidence that corroborates the PAINT process assignment. The preserved ancestral node records curated inheritance; its complete historical reconstruction is distinct from the independently supported target transport activity.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
PANTHER:PTN000811708 UNRESOLVED
Human membrane currents corroborate cation transport; the historical node placement remains uninspected.
Supporting Evidence:
GO_REF:0000033
GO:0098659 inorganic cation import across plasma membrane
IEA
GO_REF:0000107
ACCEPT
Summary: CNGA3-containing channels admit extracellular cations through the plasma membrane.
Reason: The donor source reports rat CNGgust currents after expression in HEK cells, and later rat and human channel measurements confirm cation conduction in response to intracellular cyclic nucleotides. Inward current at negative membrane potentials supports import, while the same passive channel can conduct outward under reversed electrochemical conditions. This is not an active pump claim.
Supporting Evidence:
GO_REF:0000107
GO:0120201 cone photoreceptor disc membrane
ISS
GO_REF:0000024
ACCEPT
Summary: Mouse cone-disc membrane localization supports the preserved ISS assertion.
Reason: Actual pre-embedding EM Results place the mouse signal almost exclusively on layered plasma-membrane folds forming cone discs, and the Discussion explicitly distinguishes these cone infoldings from rod-disc compartmentalization. Retain the specific disc-membrane term at ortholog scope; it is not contradicted by the plasma-membrane annotation and is not a direct human experiment.
Supporting Evidence:
GO_REF:0000024
PMID:10813773
layered folds of the plasma membrane
GO:1902495 transmembrane transporter complex
IDA
PMID:24164424
Cyclic nucleotide-gated channel subunit glycosylation regula...
MODIFY
Summary: The assayed transporter complex is the cyclic-nucleotide-activated cation channel.
Reason: The source coexpresses human CNGA3 with human CNGB3 and measures functional heteromeric currents. The specific channel-complex term is more informative than generic transmembrane transporter complex and is independently corroborated by purified human heteromer structures.
Supporting Evidence:

Core Functions

CNGA3 contributes cGMP-recognition and pore-forming elements to the cone cyclic nucleotide-gated channel. Together with CNGB3 it couples intracellular cGMP to cation flow across outer-segment membranes, supporting the electrical response underlying cone vision. CNGA3 functions within the physiological heteromer and can also form conductive homomeric channels in expression experiments.

Supporting Evidence:

References

Loading supporting content…

Download this section (compressed HTML)

Suggested Questions for Experts

Q: Which natural human CNGA3 alternative products are present in cones and in reported extra-retinal compartments, and how do their targeting and ligand responses differ?

Q: Which original probe and antibody sequences underlie the rat perikaryon and fine neuronal/glial compartment annotations, and how do their historical names map to current channel genes?

Q: Does the developmental PAINT placement reflect a direct role in cone maturation, a consequence of channel-dependent physiology, or a broader retinal phenotype?

Suggested Experiments

Experiment: Compare sequence-verified human natural products with CNGB3 at controlled expression, measuring cGMP and cAMP responses and surface delivery separately from channel assembly.

Experiment: Use endogenous tagging and genetically controlled antibodies to test the reported neuronal and glial compartments, resolving cell-body, dendritic and axon-initial-segment signals.

πŸ“š Additional Documentation

Notes

(CNGA3-notes.md)

Loading supporting content…

Download this section (compressed HTML)

πŸ“„ View Raw YAML

Loading supporting content…

Download this section (compressed HTML)