Dihydropyrimidinase-related protein 1 (CRMP1/DPYSL1), a cytoplasmic CRMP-family protein required for class-3 semaphorin (Sema3A) signaling and growth-cone collapse during neuronal development. A catalytically dead member of the metallo-dependent hydrolase (dihydropyrimidinase) superfamily, it lacks the conserved metal-cofactor residues and has no dihydropyrimidinase activity. CRMP1 regulates neuron projection development and dendritic/synaptic organization, binds filamin, and forms homo- and hetero-tetramers with other CRMPs; it also has reported roles in cell migration and as an invasion suppressor.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0005829
cytosol
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: cytosol: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).
Reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
|
|
GO:0006208
pyrimidine nucleobase catabolic process
|
IBA
NOT
GO_REF:0000033 |
ACCEPT |
Summary: NOT: CRMP1 is not involved in pyrimidine nucleobase catabolism (the process counterpart of the absent dihydropyrimidinase activity).
Reason: Correct negation, consistent with loss of catalytic activity. Retain.
Supporting Evidence:
file:human/CRMP1/CRMP1-uniprot.txt
Lacks most of the conserved residues that are essential for
|
|
GO:0016812
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
|
IBA
GO_REF:0000033 |
REMOVE |
Summary: Positive 'hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides' propagated from the metallo-hydrolase fold signature (IBA). CRMP1 lacks the catalytic metal site, and the curated dihydropyrimidinase activity is itself NOT-ed.
Reason: Domain/phylogenetic over-propagation refutable on biological grounds: the metal-cofactor-binding residues are absent (UniProt CAUTION), so no metallo-hydrolase activity is supported; the real function is a non-catalytic cytoskeletal regulator. Same basis as the DPYSL5 review.
Supporting Evidence:
file:human/CRMP1/CRMP1-uniprot.txt
Lacks most of the conserved residues that are essential for
file:human/CRMP1/CRMP1-uniprot.txt
Belongs to the metallo-dependent hydrolases superfamily.
|
|
GO:0004157
dihydropyrimidinase activity
|
IBA
NOT
GO_REF:0000033 |
ACCEPT |
Summary: NOT: CRMP1 does not have dihydropyrimidinase activity. It belongs to the metallo-dependent hydrolase superfamily but lacks the conserved metal-cofactor-binding residues required for catalysis (UniProt CAUTION).
Reason: Correct, important negation: a catalytically dead family member. Retain.
Supporting Evidence:
file:human/CRMP1/CRMP1-uniprot.txt
Lacks most of the conserved residues that are essential for
|
|
GO:0005737
cytoplasm
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: cytoplasm: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).
Reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
|
|
GO:0005813
centrosome
|
IEA
GO_REF:0000044 |
KEEP AS NON CORE |
Summary: centrosome: a secondary/broad or context-specific localization for CRMP1.
Reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
|
|
GO:0005819
spindle
|
IEA
GO_REF:0000044 |
KEEP AS NON CORE |
Summary: spindle: a secondary/broad or context-specific localization for CRMP1.
Reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
|
|
GO:0005856
cytoskeleton
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: cytoskeleton: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).
Reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
|
|
GO:0016787
hydrolase activity
|
IEA
GO_REF:0000002 |
REMOVE |
Summary: Positive 'hydrolase activity' propagated from the metallo-hydrolase fold signature (IEA). CRMP1 lacks the catalytic metal site, and the curated dihydropyrimidinase activity is itself NOT-ed.
Reason: Domain/phylogenetic over-propagation refutable on biological grounds: the metal-cofactor-binding residues are absent (UniProt CAUTION), so no metallo-hydrolase activity is supported; the real function is a non-catalytic cytoskeletal regulator. Same basis as the DPYSL5 review.
Supporting Evidence:
file:human/CRMP1/CRMP1-uniprot.txt
Lacks most of the conserved residues that are essential for
file:human/CRMP1/CRMP1-uniprot.txt
Belongs to the metallo-dependent hydrolases superfamily.
|
|
GO:0016810
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
|
IEA
GO_REF:0000002 |
REMOVE |
Summary: Positive 'hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds' propagated from the metallo-hydrolase fold signature (IEA). CRMP1 lacks the catalytic metal site, and the curated dihydropyrimidinase activity is itself NOT-ed.
Reason: Domain/phylogenetic over-propagation refutable on biological grounds: the metal-cofactor-binding residues are absent (UniProt CAUTION), so no metallo-hydrolase activity is supported; the real function is a non-catalytic cytoskeletal regulator. Same basis as the DPYSL5 review.
Supporting Evidence:
file:human/CRMP1/CRMP1-uniprot.txt
Lacks most of the conserved residues that are essential for
file:human/CRMP1/CRMP1-uniprot.txt
Belongs to the metallo-dependent hydrolases superfamily.
|
|
GO:0030426
growth cone
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: growth cone: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).
Reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
|
|
GO:0043204
perikaryon
|
IEA
GO_REF:0000044 |
KEEP AS NON CORE |
Summary: perikaryon: a secondary/broad or context-specific localization for CRMP1.
Reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
|
|
GO:0005515
protein binding
|
IPI
PMID:15383276 A protein interaction network links GIT1, an enhancer of hun... |
KEEP AS NON CORE |
Summary: Specific protein interaction (PMID:15383276); supports CRMP1's scaffold/adapter role but the generic 'protein binding' term is uninformative.
Reason: Real interaction kept as non-core supporting evidence; the informative function is captured in core_functions.
|
|
GO:0005515
protein binding
|
IPI
PMID:16169070 A human protein-protein interaction network: a resource for ... |
KEEP AS NON CORE |
Summary: Specific protein interaction (PMID:16169070); supports CRMP1's scaffold/adapter role but the generic 'protein binding' term is uninformative.
Reason: Real interaction kept as non-core supporting evidence; the informative function is captured in core_functions.
|
|
GO:0005515
protein binding
|
IPI
PMID:21900206 A directed protein interaction network for investigating int... |
KEEP AS NON CORE |
Summary: Specific protein interaction (PMID:21900206); supports CRMP1's scaffold/adapter role but the generic 'protein binding' term is uninformative.
Reason: Real interaction kept as non-core supporting evidence; the informative function is captured in core_functions.
|
|
GO:0005515
protein binding
|
IPI
PMID:24722188 Protein interaction network of alternatively spliced isoform... |
KEEP AS NON CORE |
Summary: Specific protein interaction (PMID:24722188); supports CRMP1's scaffold/adapter role but the generic 'protein binding' term is uninformative.
Reason: Real interaction kept as non-core supporting evidence; the informative function is captured in core_functions.
|
|
GO:0005515
protein binding
|
IPI
PMID:25416956 A proteome-scale map of the human interactome network. |
MARK AS OVER ANNOTATED |
Summary: Generic 'protein binding' from a high-throughput interactome screen (PMID:25416956).
Reason: High-throughput protein binding is uninformative about molecular function (curation guideline). Over-annotation.
|
|
GO:0005515
protein binding
|
IPI
PMID:32296183 A reference map of the human binary protein interactome. |
MARK AS OVER ANNOTATED |
Summary: Generic 'protein binding' from a high-throughput interactome screen (PMID:32296183).
Reason: High-throughput protein binding is uninformative about molecular function (curation guideline). Over-annotation.
|
|
GO:0005515
protein binding
|
IPI
PMID:32814053 Interactome Mapping Provides a Network of Neurodegenerative ... |
MARK AS OVER ANNOTATED |
Summary: Generic 'protein binding' from a high-throughput interactome screen (PMID:32814053).
Reason: High-throughput protein binding is uninformative about molecular function (curation guideline). Over-annotation.
|
|
GO:0042802
identical protein binding
|
IPI
PMID:24722188 Protein interaction network of alternatively spliced isoform... |
KEEP AS NON CORE |
Summary: Identical protein binding: CRMP1 forms homo- and hetero-tetramers with other CRMP-family members.
Reason: Real oligomerization but a generic term; non-core.
Supporting Evidence:
file:human/CRMP1/CRMP1-uniprot.txt
Homotetramer
|
|
GO:0042802
identical protein binding
|
IPI
PMID:25416956 A proteome-scale map of the human interactome network. |
KEEP AS NON CORE |
Summary: Identical protein binding: CRMP1 forms homo- and hetero-tetramers with other CRMP-family members.
Reason: Real oligomerization but a generic term; non-core.
Supporting Evidence:
file:human/CRMP1/CRMP1-uniprot.txt
Homotetramer
|
|
GO:0015629
actin cytoskeleton
|
IEA
GO_REF:0000107 |
ACCEPT |
Summary: actin cytoskeleton: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).
Reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
|
|
GO:0030425
dendrite
|
IEA
GO_REF:0000107 |
ACCEPT |
Summary: dendrite: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).
Reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
|
|
GO:0043025
neuronal cell body
|
IEA
GO_REF:0000107 |
ACCEPT |
Summary: neuronal cell body: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).
Reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
|
|
GO:0051219
phosphoprotein binding
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: phosphoprotein binding: a specific molecular interaction consistent with CRMP1's cytoskeletal-adapter role.
Reason: Real, specific binding; informative but secondary to the core cytoskeletal-regulation function. Non-core.
|
|
GO:0071526
semaphorin-plexin signaling pathway
|
IEA
GO_REF:0000107 |
ACCEPT |
Summary: semaphorin-plexin signaling pathway: a core neuronal/cytoskeletal process for the CRMP family (CRMP1 acts in semaphorin-driven cytoskeleton remodeling and neurite/axon development).
Reason: Core biological process for a CRMP-family cytoskeletal regulator.
Supporting Evidence:
file:human/CRMP1/CRMP1-uniprot.txt
semaphorin
|
|
GO:0098793
presynapse
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: presynapse: a secondary/broad or context-specific localization for CRMP1.
Reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
|
|
GO:0098794
postsynapse
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: postsynapse: a secondary/broad or context-specific localization for CRMP1.
Reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
|
|
GO:0150052
regulation of postsynapse assembly
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: Regulation of postsynapse assembly (IEA, ortholog transfer): a peripheral, electronically inferred role, not an established core CRMP1 function.
Reason: Ortholog-transferred electronic (IEA) annotation with no CRMP1-specific evidence for postsynaptic assembly regulation; demoted to non-core for consistency with the postsynapse (GO:0098794) localization, which is also KEEP_AS_NON_CORE.
|
|
GO:0005813
centrosome
|
IDA
GO_REF:0000052 |
KEEP AS NON CORE |
Summary: centrosome: a secondary/broad or context-specific localization for CRMP1.
Reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
|
|
GO:0005829
cytosol
|
IDA
GO_REF:0000052 |
ACCEPT |
Summary: cytosol: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).
Reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
|
|
GO:0005737
cytoplasm
|
EXP
PMID:11562390 Collapsin response mediator protein-1 and the invasion and m... |
ACCEPT |
Summary: cytoplasm: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).
Reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
|
|
GO:0043204
perikaryon
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: perikaryon: a secondary/broad or context-specific localization for CRMP1.
Reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
|
|
GO:0030496
midbody
|
IDA
PMID:19799413 From midbody protein-protein interaction network constructio... |
KEEP AS NON CORE |
Summary: midbody: a secondary/broad or context-specific localization for CRMP1.
Reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
|
|
GO:0010977
negative regulation of neuron projection development
|
IGI
PMID:25358863 Amino- and carboxyl-terminal domains of Filamin-A interact w... |
ACCEPT |
Summary: negative regulation of neuron projection development: a core neuronal/cytoskeletal process for the CRMP family (CRMP1 acts in semaphorin-driven cytoskeleton remodeling and neurite/axon development).
Reason: Core biological process for a CRMP-family cytoskeletal regulator.
|
|
GO:0031005
filamin binding
|
IPI
PMID:25358863 Amino- and carboxyl-terminal domains of Filamin-A interact w... |
ACCEPT |
Summary: filamin binding: a specific molecular interaction consistent with CRMP1's cytoskeletal-adapter role.
Reason: Filamin binding is a specific, experimentally demonstrated interaction (PMID:25358863) central to this CRMP's cytoskeletal-adapter role; retained as the representative core binding molecular function.
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-399951 |
ACCEPT |
Summary: cytosol: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).
Reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-399944 |
ACCEPT |
Summary: cytosol: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).
Reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-399947 |
ACCEPT |
Summary: cytosol: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).
Reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
|
|
GO:0006139
nucleobase-containing compound metabolic process
|
TAS
PMID:8973361 A novel gene family defined by human dihydropyrimidinase and... |
REMOVE |
Summary: Nucleobase-containing compound metabolic process (TAS, PMID:8973361) tied to the now-defunct dihydropyrimidinase activity claim.
Reason: Legacy process annotation dependent on the superseded enzymatic activity; remove, consistent with the NOT|pyrimidine catabolism.
Supporting Evidence:
file:human/CRMP1/CRMP1-uniprot.txt
Lacks most of the conserved residues that are essential for
|
|
GO:0007399
nervous system development
|
TAS
PMID:8973361 A novel gene family defined by human dihydropyrimidinase and... |
ACCEPT |
Summary: nervous system development: a core neuronal/cytoskeletal process for the CRMP family (CRMP1 acts in semaphorin-driven cytoskeleton remodeling and neurite/axon development).
Reason: Core biological process for a CRMP-family cytoskeletal regulator.
|
Q: By what mechanism does CRMP1 mediate Sema3A-induced growth-cone collapse, and how does this relate to its reported invasion-suppressor activity in cancer?
Experiment: Compare Sema3A-induced growth-cone collapse and tumour-cell invasion in cells expressing wild-type vs signaling-deficient CRMP1.
Hypothesis: CRMP1's Sema3A growth-cone-collapse function underlies its invasion-suppressor activity.
# yaml-language-server: $schema=../../../src/ai_gene_review/schema/gene_review.yaml
id: Q14194
gene_symbol: CRMP1
product_type: PROTEIN
status: DRAFT
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: Dihydropyrimidinase-related protein 1 (CRMP1/DPYSL1), a cytoplasmic CRMP-family protein required
for class-3 semaphorin (Sema3A) signaling and growth-cone collapse during neuronal development. A catalytically
dead member of the metallo-dependent hydrolase (dihydropyrimidinase) superfamily, it lacks the conserved
metal-cofactor residues and has no dihydropyrimidinase activity. CRMP1 regulates neuron projection development
and dendritic/synaptic organization, binds filamin, and forms homo- and hetero-tetramers with other
CRMPs; it also has reported roles in cell migration and as an invasion suppressor.
alternative_products:
- name: '1'
id: Q14194-1
- name: LCRMP-1
id: Q14194-2
sequence_note: VSP_042545
existing_annotations:
- term:
id: GO:0005829
label: cytosol
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: 'cytosol: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).'
action: ACCEPT
reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
- term:
id: GO:0006208
label: pyrimidine nucleobase catabolic process
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
negated: true
review:
summary: 'NOT: CRMP1 is not involved in pyrimidine nucleobase catabolism (the process counterpart
of the absent dihydropyrimidinase activity).'
action: ACCEPT
reason: Correct negation, consistent with loss of catalytic activity. Retain.
supported_by:
- reference_id: file:human/CRMP1/CRMP1-uniprot.txt
supporting_text: Lacks most of the conserved residues that are essential for
- term:
id: GO:0016812
label: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: Positive 'hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic
amides' propagated from the metallo-hydrolase fold signature (IBA). CRMP1 lacks the catalytic metal
site, and the curated dihydropyrimidinase activity is itself NOT-ed.
action: REMOVE
reason: 'Domain/phylogenetic over-propagation refutable on biological grounds: the metal-cofactor-binding
residues are absent (UniProt CAUTION), so no metallo-hydrolase activity is supported; the real function
is a non-catalytic cytoskeletal regulator. Same basis as the DPYSL5 review.'
supported_by:
- reference_id: file:human/CRMP1/CRMP1-uniprot.txt
supporting_text: Lacks most of the conserved residues that are essential for
- reference_id: file:human/CRMP1/CRMP1-uniprot.txt
supporting_text: Belongs to the metallo-dependent hydrolases superfamily.
- term:
id: GO:0004157
label: dihydropyrimidinase activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
negated: true
review:
summary: 'NOT: CRMP1 does not have dihydropyrimidinase activity. It belongs to the metallo-dependent
hydrolase superfamily but lacks the conserved metal-cofactor-binding residues required for catalysis
(UniProt CAUTION).'
action: ACCEPT
reason: 'Correct, important negation: a catalytically dead family member. Retain.'
supported_by:
- reference_id: file:human/CRMP1/CRMP1-uniprot.txt
supporting_text: Lacks most of the conserved residues that are essential for
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: located_in
review:
summary: 'cytoplasm: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).'
action: ACCEPT
reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
- term:
id: GO:0005813
label: centrosome
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: 'centrosome: a secondary/broad or context-specific localization for CRMP1.'
action: KEEP_AS_NON_CORE
reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
- term:
id: GO:0005819
label: spindle
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: 'spindle: a secondary/broad or context-specific localization for CRMP1.'
action: KEEP_AS_NON_CORE
reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
- term:
id: GO:0005856
label: cytoskeleton
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: 'cytoskeleton: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).'
action: ACCEPT
reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
- term:
id: GO:0016787
label: hydrolase activity
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: enables
review:
summary: Positive 'hydrolase activity' propagated from the metallo-hydrolase fold signature (IEA).
CRMP1 lacks the catalytic metal site, and the curated dihydropyrimidinase activity is itself NOT-ed.
action: REMOVE
reason: 'Domain/phylogenetic over-propagation refutable on biological grounds: the metal-cofactor-binding
residues are absent (UniProt CAUTION), so no metallo-hydrolase activity is supported; the real function
is a non-catalytic cytoskeletal regulator. Same basis as the DPYSL5 review.'
supported_by:
- reference_id: file:human/CRMP1/CRMP1-uniprot.txt
supporting_text: Lacks most of the conserved residues that are essential for
- reference_id: file:human/CRMP1/CRMP1-uniprot.txt
supporting_text: Belongs to the metallo-dependent hydrolases superfamily.
- term:
id: GO:0016810
label: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: enables
review:
summary: Positive 'hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds' propagated
from the metallo-hydrolase fold signature (IEA). CRMP1 lacks the catalytic metal site, and the curated
dihydropyrimidinase activity is itself NOT-ed.
action: REMOVE
reason: 'Domain/phylogenetic over-propagation refutable on biological grounds: the metal-cofactor-binding
residues are absent (UniProt CAUTION), so no metallo-hydrolase activity is supported; the real function
is a non-catalytic cytoskeletal regulator. Same basis as the DPYSL5 review.'
supported_by:
- reference_id: file:human/CRMP1/CRMP1-uniprot.txt
supporting_text: Lacks most of the conserved residues that are essential for
- reference_id: file:human/CRMP1/CRMP1-uniprot.txt
supporting_text: Belongs to the metallo-dependent hydrolases superfamily.
- term:
id: GO:0030426
label: growth cone
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: located_in
review:
summary: 'growth cone: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).'
action: ACCEPT
reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
- term:
id: GO:0043204
label: perikaryon
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: 'perikaryon: a secondary/broad or context-specific localization for CRMP1.'
action: KEEP_AS_NON_CORE
reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:15383276
qualifier: enables
review:
summary: Specific protein interaction (PMID:15383276); supports CRMP1's scaffold/adapter role but
the generic 'protein binding' term is uninformative.
action: KEEP_AS_NON_CORE
reason: Real interaction kept as non-core supporting evidence; the informative function is captured
in core_functions.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16169070
qualifier: enables
review:
summary: Specific protein interaction (PMID:16169070); supports CRMP1's scaffold/adapter role but
the generic 'protein binding' term is uninformative.
action: KEEP_AS_NON_CORE
reason: Real interaction kept as non-core supporting evidence; the informative function is captured
in core_functions.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:21900206
qualifier: enables
review:
summary: Specific protein interaction (PMID:21900206); supports CRMP1's scaffold/adapter role but
the generic 'protein binding' term is uninformative.
action: KEEP_AS_NON_CORE
reason: Real interaction kept as non-core supporting evidence; the informative function is captured
in core_functions.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:24722188
qualifier: enables
review:
summary: Specific protein interaction (PMID:24722188); supports CRMP1's scaffold/adapter role but
the generic 'protein binding' term is uninformative.
action: KEEP_AS_NON_CORE
reason: Real interaction kept as non-core supporting evidence; the informative function is captured
in core_functions.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:25416956
qualifier: enables
review:
summary: Generic 'protein binding' from a high-throughput interactome screen (PMID:25416956).
action: MARK_AS_OVER_ANNOTATED
reason: High-throughput protein binding is uninformative about molecular function (curation guideline).
Over-annotation.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:32296183
qualifier: enables
review:
summary: Generic 'protein binding' from a high-throughput interactome screen (PMID:32296183).
action: MARK_AS_OVER_ANNOTATED
reason: High-throughput protein binding is uninformative about molecular function (curation guideline).
Over-annotation.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:32814053
qualifier: enables
review:
summary: Generic 'protein binding' from a high-throughput interactome screen (PMID:32814053).
action: MARK_AS_OVER_ANNOTATED
reason: High-throughput protein binding is uninformative about molecular function (curation guideline).
Over-annotation.
- term:
id: GO:0042802
label: identical protein binding
evidence_type: IPI
original_reference_id: PMID:24722188
qualifier: enables
review:
summary: 'Identical protein binding: CRMP1 forms homo- and hetero-tetramers with other CRMP-family
members.'
action: KEEP_AS_NON_CORE
reason: Real oligomerization but a generic term; non-core.
supported_by:
- reference_id: file:human/CRMP1/CRMP1-uniprot.txt
supporting_text: Homotetramer
- term:
id: GO:0042802
label: identical protein binding
evidence_type: IPI
original_reference_id: PMID:25416956
qualifier: enables
review:
summary: 'Identical protein binding: CRMP1 forms homo- and hetero-tetramers with other CRMP-family
members.'
action: KEEP_AS_NON_CORE
reason: Real oligomerization but a generic term; non-core.
supported_by:
- reference_id: file:human/CRMP1/CRMP1-uniprot.txt
supporting_text: Homotetramer
- term:
id: GO:0015629
label: actin cytoskeleton
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: located_in
review:
summary: 'actin cytoskeleton: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).'
action: ACCEPT
reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
- term:
id: GO:0030425
label: dendrite
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: located_in
review:
summary: 'dendrite: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).'
action: ACCEPT
reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
- term:
id: GO:0043025
label: neuronal cell body
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: located_in
review:
summary: 'neuronal cell body: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).'
action: ACCEPT
reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
- term:
id: GO:0051219
label: phosphoprotein binding
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: enables
review:
summary: 'phosphoprotein binding: a specific molecular interaction consistent with CRMP1''s cytoskeletal-adapter
role.'
action: KEEP_AS_NON_CORE
reason: Real, specific binding; informative but secondary to the core cytoskeletal-regulation function.
Non-core.
- term:
id: GO:0071526
label: semaphorin-plexin signaling pathway
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: 'semaphorin-plexin signaling pathway: a core neuronal/cytoskeletal process for the CRMP family
(CRMP1 acts in semaphorin-driven cytoskeleton remodeling and neurite/axon development).'
action: ACCEPT
reason: Core biological process for a CRMP-family cytoskeletal regulator.
supported_by:
- reference_id: file:human/CRMP1/CRMP1-uniprot.txt
supporting_text: semaphorin
- term:
id: GO:0098793
label: presynapse
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: is_active_in
review:
summary: 'presynapse: a secondary/broad or context-specific localization for CRMP1.'
action: KEEP_AS_NON_CORE
reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
- term:
id: GO:0098794
label: postsynapse
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: is_active_in
review:
summary: 'postsynapse: a secondary/broad or context-specific localization for CRMP1.'
action: KEEP_AS_NON_CORE
reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
- term:
id: GO:0150052
label: regulation of postsynapse assembly
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: 'Regulation of postsynapse assembly (IEA, ortholog transfer): a peripheral, electronically
inferred role, not an established core CRMP1 function.'
action: KEEP_AS_NON_CORE
reason: Ortholog-transferred electronic (IEA) annotation with no CRMP1-specific evidence for postsynaptic
assembly regulation; demoted to non-core for consistency with the postsynapse (GO:0098794) localization,
which is also KEEP_AS_NON_CORE.
- term:
id: GO:0005813
label: centrosome
evidence_type: IDA
original_reference_id: GO_REF:0000052
qualifier: located_in
review:
summary: 'centrosome: a secondary/broad or context-specific localization for CRMP1.'
action: KEEP_AS_NON_CORE
reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
- term:
id: GO:0005829
label: cytosol
evidence_type: IDA
original_reference_id: GO_REF:0000052
qualifier: located_in
review:
summary: 'cytosol: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).'
action: ACCEPT
reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
- term:
id: GO:0005737
label: cytoplasm
evidence_type: EXP
original_reference_id: PMID:11562390
qualifier: located_in
review:
summary: 'cytoplasm: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).'
action: ACCEPT
reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
- term:
id: GO:0043204
label: perikaryon
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: located_in
review:
summary: 'perikaryon: a secondary/broad or context-specific localization for CRMP1.'
action: KEEP_AS_NON_CORE
reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
- term:
id: GO:0030496
label: midbody
evidence_type: IDA
original_reference_id: PMID:19799413
qualifier: located_in
review:
summary: 'midbody: a secondary/broad or context-specific localization for CRMP1.'
action: KEEP_AS_NON_CORE
reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
- term:
id: GO:0010977
label: negative regulation of neuron projection development
evidence_type: IGI
original_reference_id: PMID:25358863
qualifier: involved_in
review:
summary: 'negative regulation of neuron projection development: a core neuronal/cytoskeletal process
for the CRMP family (CRMP1 acts in semaphorin-driven cytoskeleton remodeling and neurite/axon development).'
action: ACCEPT
reason: Core biological process for a CRMP-family cytoskeletal regulator.
- term:
id: GO:0031005
label: filamin binding
evidence_type: IPI
original_reference_id: PMID:25358863
qualifier: enables
review:
summary: 'filamin binding: a specific molecular interaction consistent with CRMP1''s cytoskeletal-adapter
role.'
action: ACCEPT
reason: Filamin binding is a specific, experimentally demonstrated interaction (PMID:25358863) central
to this CRMP's cytoskeletal-adapter role; retained as the representative core binding molecular
function.
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-399951
qualifier: located_in
review:
summary: 'cytosol: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).'
action: ACCEPT
reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-399944
qualifier: located_in
review:
summary: 'cytosol: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).'
action: ACCEPT
reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-399947
qualifier: located_in
review:
summary: 'cytosol: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).'
action: ACCEPT
reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
- term:
id: GO:0006139
label: nucleobase-containing compound metabolic process
evidence_type: TAS
original_reference_id: PMID:8973361
qualifier: involved_in
review:
summary: Nucleobase-containing compound metabolic process (TAS, PMID:8973361) tied to the now-defunct
dihydropyrimidinase activity claim.
action: REMOVE
reason: Legacy process annotation dependent on the superseded enzymatic activity; remove, consistent
with the NOT|pyrimidine catabolism.
supported_by:
- reference_id: file:human/CRMP1/CRMP1-uniprot.txt
supporting_text: Lacks most of the conserved residues that are essential for
- term:
id: GO:0007399
label: nervous system development
evidence_type: TAS
original_reference_id: PMID:8973361
qualifier: involved_in
review:
summary: 'nervous system development: a core neuronal/cytoskeletal process for the CRMP family (CRMP1
acts in semaphorin-driven cytoskeleton remodeling and neurite/axon development).'
action: ACCEPT
reason: Core biological process for a CRMP-family cytoskeletal regulator.
references:
- id: GO_REF:0000002
title: GO annotation through association of InterPro records with GO terms
findings: []
- id: GO_REF:0000024
title: Manual transfer of experimentally-verified annotations to orthologs by curator judgment
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000044
title: GO annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping
findings: []
- id: GO_REF:0000052
title: GO annotation based on curation of immunofluorescence data (HPA)
findings: []
- id: GO_REF:0000107
title: Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl
Compara
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: file:human/CRMP1/CRMP1-uniprot.txt
title: UniProt entry for CRMP1
findings:
- statement: CRMP1 lacks the metal-cofactor-binding residues required for dihydropyrimidinase activity.
supporting_text: Lacks most of the conserved residues that are essential for
- statement: CRMP1 belongs to the metallo-dependent hydrolase superfamily.
supporting_text: Belongs to the metallo-dependent hydrolases superfamily.
- id: PMID:11562390
title: Collapsin response mediator protein-1 and the invasion and metastasis of cancer cells.
findings: []
- id: PMID:15383276
title: A protein interaction network links GIT1, an enhancer of huntingtin aggregation, to Huntington's
disease.
findings: []
- id: PMID:16169070
title: 'A human protein-protein interaction network: a resource for annotating the proteome.'
findings: []
- id: PMID:19799413
title: From midbody protein-protein interaction network construction to novel regulators in cytokinesis.
findings: []
- id: PMID:21900206
title: A directed protein interaction network for investigating intracellular signal transduction.
findings: []
- id: PMID:24722188
title: Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors
for autism.
findings: []
- id: PMID:25358863
title: Amino- and carboxyl-terminal domains of Filamin-A interact with CRMP1 to mediate Sema3A signalling.
findings: []
- id: PMID:25416956
title: A proteome-scale map of the human interactome network.
findings: []
- id: PMID:32296183
title: A reference map of the human binary protein interactome.
findings: []
- id: PMID:32814053
title: Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread
Protein Aggregation in Affected Brains.
findings: []
- id: PMID:8973361
title: A novel gene family defined by human dihydropyrimidinase and three related proteins with differential
tissue distribution.
findings: []
- id: Reactome:R-HSA-399944
title: Reactome pathway (CRMP/semaphorin signalling)
findings: []
- id: Reactome:R-HSA-399947
title: Reactome pathway (CRMP/semaphorin signalling)
findings: []
- id: Reactome:R-HSA-399951
title: Reactome pathway (CRMP/semaphorin signalling)
findings: []
aliases:
- DPYSL1
- CRMP-1
- DRP-1
- ULIP-3
- Collapsin response mediator protein 1
core_functions:
- description: Catalytically inactive CRMP-family cytoskeletal regulator mediating Sema3A-induced growth-cone
collapse and neuron projection development via the semaphorin-plexin pathway.
directly_involved_in:
- id: GO:0071526
label: semaphorin-plexin signaling pathway
- id: GO:0007399
label: nervous system development
locations:
- id: GO:0005829
label: cytosol
- id: GO:0030426
label: growth cone
supported_by:
- reference_id: file:human/CRMP1/CRMP1-uniprot.txt
supporting_text: Lacks most of the conserved residues that are essential for
molecular_function:
id: GO:0031005
label: filamin binding
suggested_questions:
- question: By what mechanism does CRMP1 mediate Sema3A-induced growth-cone collapse, and how does this
relate to its reported invasion-suppressor activity in cancer?
suggested_experiments:
- hypothesis: CRMP1's Sema3A growth-cone-collapse function underlies its invasion-suppressor activity.
description: Compare Sema3A-induced growth-cone collapse and tumour-cell invasion in cells expressing
wild-type vs signaling-deficient CRMP1.