CRMP1

UniProt ID: Q14194
Organism: Homo sapiens
Review Status: DRAFT
Aliases:
DPYSL1 CRMP-1 DRP-1 ULIP-3 Collapsin response mediator protein 1
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Gene Description

Dihydropyrimidinase-related protein 1 (CRMP1/DPYSL1), a cytoplasmic CRMP-family protein required for class-3 semaphorin (Sema3A) signaling and growth-cone collapse during neuronal development. A catalytically dead member of the metallo-dependent hydrolase (dihydropyrimidinase) superfamily, it lacks the conserved metal-cofactor residues and has no dihydropyrimidinase activity. CRMP1 regulates neuron projection development and dendritic/synaptic organization, binds filamin, and forms homo- and hetero-tetramers with other CRMPs; it also has reported roles in cell migration and as an invasion suppressor.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0005829 cytosol
IBA
GO_REF:0000033
ACCEPT
Summary: cytosol: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).
Reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
GO:0006208 pyrimidine nucleobase catabolic process
IBA NOT
GO_REF:0000033
ACCEPT
Summary: NOT: CRMP1 is not involved in pyrimidine nucleobase catabolism (the process counterpart of the absent dihydropyrimidinase activity).
Reason: Correct negation, consistent with loss of catalytic activity. Retain.
Supporting Evidence:
file:human/CRMP1/CRMP1-uniprot.txt
Lacks most of the conserved residues that are essential for
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
IBA
GO_REF:0000033
REMOVE
Summary: Positive 'hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides' propagated from the metallo-hydrolase fold signature (IBA). CRMP1 lacks the catalytic metal site, and the curated dihydropyrimidinase activity is itself NOT-ed.
Reason: Domain/phylogenetic over-propagation refutable on biological grounds: the metal-cofactor-binding residues are absent (UniProt CAUTION), so no metallo-hydrolase activity is supported; the real function is a non-catalytic cytoskeletal regulator. Same basis as the DPYSL5 review.
Supporting Evidence:
file:human/CRMP1/CRMP1-uniprot.txt
Lacks most of the conserved residues that are essential for
file:human/CRMP1/CRMP1-uniprot.txt
Belongs to the metallo-dependent hydrolases superfamily.
GO:0004157 dihydropyrimidinase activity
IBA NOT
GO_REF:0000033
ACCEPT
Summary: NOT: CRMP1 does not have dihydropyrimidinase activity. It belongs to the metallo-dependent hydrolase superfamily but lacks the conserved metal-cofactor-binding residues required for catalysis (UniProt CAUTION).
Reason: Correct, important negation: a catalytically dead family member. Retain.
Supporting Evidence:
file:human/CRMP1/CRMP1-uniprot.txt
Lacks most of the conserved residues that are essential for
GO:0005737 cytoplasm
IEA
GO_REF:0000120
ACCEPT
Summary: cytoplasm: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).
Reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
GO:0005813 centrosome
IEA
GO_REF:0000044
KEEP AS NON CORE
Summary: centrosome: a secondary/broad or context-specific localization for CRMP1.
Reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
GO:0005819 spindle
IEA
GO_REF:0000044
KEEP AS NON CORE
Summary: spindle: a secondary/broad or context-specific localization for CRMP1.
Reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
GO:0005856 cytoskeleton
IEA
GO_REF:0000044
ACCEPT
Summary: cytoskeleton: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).
Reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
GO:0016787 hydrolase activity
IEA
GO_REF:0000002
REMOVE
Summary: Positive 'hydrolase activity' propagated from the metallo-hydrolase fold signature (IEA). CRMP1 lacks the catalytic metal site, and the curated dihydropyrimidinase activity is itself NOT-ed.
Reason: Domain/phylogenetic over-propagation refutable on biological grounds: the metal-cofactor-binding residues are absent (UniProt CAUTION), so no metallo-hydrolase activity is supported; the real function is a non-catalytic cytoskeletal regulator. Same basis as the DPYSL5 review.
Supporting Evidence:
file:human/CRMP1/CRMP1-uniprot.txt
Lacks most of the conserved residues that are essential for
file:human/CRMP1/CRMP1-uniprot.txt
Belongs to the metallo-dependent hydrolases superfamily.
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
IEA
GO_REF:0000002
REMOVE
Summary: Positive 'hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds' propagated from the metallo-hydrolase fold signature (IEA). CRMP1 lacks the catalytic metal site, and the curated dihydropyrimidinase activity is itself NOT-ed.
Reason: Domain/phylogenetic over-propagation refutable on biological grounds: the metal-cofactor-binding residues are absent (UniProt CAUTION), so no metallo-hydrolase activity is supported; the real function is a non-catalytic cytoskeletal regulator. Same basis as the DPYSL5 review.
Supporting Evidence:
file:human/CRMP1/CRMP1-uniprot.txt
Lacks most of the conserved residues that are essential for
file:human/CRMP1/CRMP1-uniprot.txt
Belongs to the metallo-dependent hydrolases superfamily.
GO:0030426 growth cone
IEA
GO_REF:0000120
ACCEPT
Summary: growth cone: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).
Reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
GO:0043204 perikaryon
IEA
GO_REF:0000044
KEEP AS NON CORE
Summary: perikaryon: a secondary/broad or context-specific localization for CRMP1.
Reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
GO:0005515 protein binding
IPI
PMID:15383276
A protein interaction network links GIT1, an enhancer of hun...
KEEP AS NON CORE
Summary: Specific protein interaction (PMID:15383276); supports CRMP1's scaffold/adapter role but the generic 'protein binding' term is uninformative.
Reason: Real interaction kept as non-core supporting evidence; the informative function is captured in core_functions.
GO:0005515 protein binding
IPI
PMID:16169070
A human protein-protein interaction network: a resource for ...
KEEP AS NON CORE
Summary: Specific protein interaction (PMID:16169070); supports CRMP1's scaffold/adapter role but the generic 'protein binding' term is uninformative.
Reason: Real interaction kept as non-core supporting evidence; the informative function is captured in core_functions.
GO:0005515 protein binding
IPI
PMID:21900206
A directed protein interaction network for investigating int...
KEEP AS NON CORE
Summary: Specific protein interaction (PMID:21900206); supports CRMP1's scaffold/adapter role but the generic 'protein binding' term is uninformative.
Reason: Real interaction kept as non-core supporting evidence; the informative function is captured in core_functions.
GO:0005515 protein binding
IPI
PMID:24722188
Protein interaction network of alternatively spliced isoform...
KEEP AS NON CORE
Summary: Specific protein interaction (PMID:24722188); supports CRMP1's scaffold/adapter role but the generic 'protein binding' term is uninformative.
Reason: Real interaction kept as non-core supporting evidence; the informative function is captured in core_functions.
GO:0005515 protein binding
IPI
PMID:25416956
A proteome-scale map of the human interactome network.
MARK AS OVER ANNOTATED
Summary: Generic 'protein binding' from a high-throughput interactome screen (PMID:25416956).
Reason: High-throughput protein binding is uninformative about molecular function (curation guideline). Over-annotation.
GO:0005515 protein binding
IPI
PMID:32296183
A reference map of the human binary protein interactome.
MARK AS OVER ANNOTATED
Summary: Generic 'protein binding' from a high-throughput interactome screen (PMID:32296183).
Reason: High-throughput protein binding is uninformative about molecular function (curation guideline). Over-annotation.
GO:0005515 protein binding
IPI
PMID:32814053
Interactome Mapping Provides a Network of Neurodegenerative ...
MARK AS OVER ANNOTATED
Summary: Generic 'protein binding' from a high-throughput interactome screen (PMID:32814053).
Reason: High-throughput protein binding is uninformative about molecular function (curation guideline). Over-annotation.
GO:0042802 identical protein binding
IPI
PMID:24722188
Protein interaction network of alternatively spliced isoform...
KEEP AS NON CORE
Summary: Identical protein binding: CRMP1 forms homo- and hetero-tetramers with other CRMP-family members.
Reason: Real oligomerization but a generic term; non-core.
Supporting Evidence:
file:human/CRMP1/CRMP1-uniprot.txt
Homotetramer
GO:0042802 identical protein binding
IPI
PMID:25416956
A proteome-scale map of the human interactome network.
KEEP AS NON CORE
Summary: Identical protein binding: CRMP1 forms homo- and hetero-tetramers with other CRMP-family members.
Reason: Real oligomerization but a generic term; non-core.
Supporting Evidence:
file:human/CRMP1/CRMP1-uniprot.txt
Homotetramer
GO:0015629 actin cytoskeleton
IEA
GO_REF:0000107
ACCEPT
Summary: actin cytoskeleton: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).
Reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
GO:0030425 dendrite
IEA
GO_REF:0000107
ACCEPT
Summary: dendrite: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).
Reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
GO:0043025 neuronal cell body
IEA
GO_REF:0000107
ACCEPT
Summary: neuronal cell body: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).
Reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
GO:0051219 phosphoprotein binding
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: phosphoprotein binding: a specific molecular interaction consistent with CRMP1's cytoskeletal-adapter role.
Reason: Real, specific binding; informative but secondary to the core cytoskeletal-regulation function. Non-core.
GO:0071526 semaphorin-plexin signaling pathway
IEA
GO_REF:0000107
ACCEPT
Summary: semaphorin-plexin signaling pathway: a core neuronal/cytoskeletal process for the CRMP family (CRMP1 acts in semaphorin-driven cytoskeleton remodeling and neurite/axon development).
Reason: Core biological process for a CRMP-family cytoskeletal regulator.
Supporting Evidence:
file:human/CRMP1/CRMP1-uniprot.txt
semaphorin
GO:0098793 presynapse
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: presynapse: a secondary/broad or context-specific localization for CRMP1.
Reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
GO:0098794 postsynapse
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: postsynapse: a secondary/broad or context-specific localization for CRMP1.
Reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
GO:0150052 regulation of postsynapse assembly
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: Regulation of postsynapse assembly (IEA, ortholog transfer): a peripheral, electronically inferred role, not an established core CRMP1 function.
Reason: Ortholog-transferred electronic (IEA) annotation with no CRMP1-specific evidence for postsynaptic assembly regulation; demoted to non-core for consistency with the postsynapse (GO:0098794) localization, which is also KEEP_AS_NON_CORE.
GO:0005813 centrosome
IDA
GO_REF:0000052
KEEP AS NON CORE
Summary: centrosome: a secondary/broad or context-specific localization for CRMP1.
Reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
GO:0005829 cytosol
IDA
GO_REF:0000052
ACCEPT
Summary: cytosol: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).
Reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
GO:0005737 cytoplasm
EXP
PMID:11562390
Collapsin response mediator protein-1 and the invasion and m...
ACCEPT
Summary: cytoplasm: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).
Reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
GO:0043204 perikaryon
ISS
GO_REF:0000024
KEEP AS NON CORE
Summary: perikaryon: a secondary/broad or context-specific localization for CRMP1.
Reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
GO:0030496 midbody
IDA
PMID:19799413
From midbody protein-protein interaction network constructio...
KEEP AS NON CORE
Summary: midbody: a secondary/broad or context-specific localization for CRMP1.
Reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
GO:0010977 negative regulation of neuron projection development
IGI
PMID:25358863
Amino- and carboxyl-terminal domains of Filamin-A interact w...
ACCEPT
Summary: negative regulation of neuron projection development: a core neuronal/cytoskeletal process for the CRMP family (CRMP1 acts in semaphorin-driven cytoskeleton remodeling and neurite/axon development).
Reason: Core biological process for a CRMP-family cytoskeletal regulator.
GO:0031005 filamin binding
IPI
PMID:25358863
Amino- and carboxyl-terminal domains of Filamin-A interact w...
ACCEPT
Summary: filamin binding: a specific molecular interaction consistent with CRMP1's cytoskeletal-adapter role.
Reason: Filamin binding is a specific, experimentally demonstrated interaction (PMID:25358863) central to this CRMP's cytoskeletal-adapter role; retained as the representative core binding molecular function.
GO:0005829 cytosol
TAS
Reactome:R-HSA-399951
ACCEPT
Summary: cytosol: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).
Reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
GO:0005829 cytosol
TAS
Reactome:R-HSA-399944
ACCEPT
Summary: cytosol: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).
Reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
GO:0005829 cytosol
TAS
Reactome:R-HSA-399947
ACCEPT
Summary: cytosol: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).
Reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
GO:0006139 nucleobase-containing compound metabolic process
TAS
PMID:8973361
A novel gene family defined by human dihydropyrimidinase and...
REMOVE
Summary: Nucleobase-containing compound metabolic process (TAS, PMID:8973361) tied to the now-defunct dihydropyrimidinase activity claim.
Reason: Legacy process annotation dependent on the superseded enzymatic activity; remove, consistent with the NOT|pyrimidine catabolism.
Supporting Evidence:
file:human/CRMP1/CRMP1-uniprot.txt
Lacks most of the conserved residues that are essential for
GO:0007399 nervous system development
TAS
PMID:8973361
A novel gene family defined by human dihydropyrimidinase and...
ACCEPT
Summary: nervous system development: a core neuronal/cytoskeletal process for the CRMP family (CRMP1 acts in semaphorin-driven cytoskeleton remodeling and neurite/axon development).
Reason: Core biological process for a CRMP-family cytoskeletal regulator.

Core Functions

Catalytically inactive CRMP-family cytoskeletal regulator mediating Sema3A-induced growth-cone collapse and neuron projection development via the semaphorin-plexin pathway.

Supporting Evidence:
  • file:human/CRMP1/CRMP1-uniprot.txt
    Lacks most of the conserved residues that are essential for

References

GO annotation through association of InterPro records with GO terms
Manual transfer of experimentally-verified annotations to orthologs by curator judgment
Annotation inferences using phylogenetic trees
GO annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping
GO annotation based on curation of immunofluorescence data (HPA)
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
Combined Automated Annotation using Multiple IEA Methods
file:human/CRMP1/CRMP1-uniprot.txt
UniProt entry for CRMP1
  • CRMP1 lacks the metal-cofactor-binding residues required for dihydropyrimidinase activity.
    "Lacks most of the conserved residues that are essential for"
  • CRMP1 belongs to the metallo-dependent hydrolase superfamily.
    "Belongs to the metallo-dependent hydrolases superfamily."
Collapsin response mediator protein-1 and the invasion and metastasis of cancer cells.
A protein interaction network links GIT1, an enhancer of huntingtin aggregation, to Huntington's disease.
A human protein-protein interaction network: a resource for annotating the proteome.
From midbody protein-protein interaction network construction to novel regulators in cytokinesis.
A directed protein interaction network for investigating intracellular signal transduction.
Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism.
Amino- and carboxyl-terminal domains of Filamin-A interact with CRMP1 to mediate Sema3A signalling.
A proteome-scale map of the human interactome network.
A reference map of the human binary protein interactome.
Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains.
A novel gene family defined by human dihydropyrimidinase and three related proteins with differential tissue distribution.
Reactome:R-HSA-399944
Reactome pathway (CRMP/semaphorin signalling)
Reactome:R-HSA-399947
Reactome pathway (CRMP/semaphorin signalling)
Reactome:R-HSA-399951
Reactome pathway (CRMP/semaphorin signalling)

Suggested Questions for Experts

Q: By what mechanism does CRMP1 mediate Sema3A-induced growth-cone collapse, and how does this relate to its reported invasion-suppressor activity in cancer?

Suggested Experiments

Experiment: Compare Sema3A-induced growth-cone collapse and tumour-cell invasion in cells expressing wild-type vs signaling-deficient CRMP1.

Hypothesis: CRMP1's Sema3A growth-cone-collapse function underlies its invasion-suppressor activity.

📄 View Raw YAML

# yaml-language-server: $schema=../../../src/ai_gene_review/schema/gene_review.yaml
id: Q14194
gene_symbol: CRMP1
product_type: PROTEIN
status: DRAFT
taxon:
  id: NCBITaxon:9606
  label: Homo sapiens
description: Dihydropyrimidinase-related protein 1 (CRMP1/DPYSL1), a cytoplasmic CRMP-family protein required
  for class-3 semaphorin (Sema3A) signaling and growth-cone collapse during neuronal development. A catalytically
  dead member of the metallo-dependent hydrolase (dihydropyrimidinase) superfamily, it lacks the conserved
  metal-cofactor residues and has no dihydropyrimidinase activity. CRMP1 regulates neuron projection development
  and dendritic/synaptic organization, binds filamin, and forms homo- and hetero-tetramers with other
  CRMPs; it also has reported roles in cell migration and as an invasion suppressor.
alternative_products:
- name: '1'
  id: Q14194-1
- name: LCRMP-1
  id: Q14194-2
  sequence_note: VSP_042545
existing_annotations:
- term:
    id: GO:0005829
    label: cytosol
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  qualifier: is_active_in
  review:
    summary: 'cytosol: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).'
    action: ACCEPT
    reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
- term:
    id: GO:0006208
    label: pyrimidine nucleobase catabolic process
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  qualifier: involved_in
  negated: true
  review:
    summary: 'NOT: CRMP1 is not involved in pyrimidine nucleobase catabolism (the process counterpart
      of the absent dihydropyrimidinase activity).'
    action: ACCEPT
    reason: Correct negation, consistent with loss of catalytic activity. Retain.
    supported_by:
    - reference_id: file:human/CRMP1/CRMP1-uniprot.txt
      supporting_text: Lacks most of the conserved residues that are essential for
- term:
    id: GO:0016812
    label: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  qualifier: enables
  review:
    summary: Positive 'hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic
      amides' propagated from the metallo-hydrolase fold signature (IBA). CRMP1 lacks the catalytic metal
      site, and the curated dihydropyrimidinase activity is itself NOT-ed.
    action: REMOVE
    reason: 'Domain/phylogenetic over-propagation refutable on biological grounds: the metal-cofactor-binding
      residues are absent (UniProt CAUTION), so no metallo-hydrolase activity is supported; the real function
      is a non-catalytic cytoskeletal regulator. Same basis as the DPYSL5 review.'
    supported_by:
    - reference_id: file:human/CRMP1/CRMP1-uniprot.txt
      supporting_text: Lacks most of the conserved residues that are essential for
    - reference_id: file:human/CRMP1/CRMP1-uniprot.txt
      supporting_text: Belongs to the metallo-dependent hydrolases superfamily.
- term:
    id: GO:0004157
    label: dihydropyrimidinase activity
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  qualifier: enables
  negated: true
  review:
    summary: 'NOT: CRMP1 does not have dihydropyrimidinase activity. It belongs to the metallo-dependent
      hydrolase superfamily but lacks the conserved metal-cofactor-binding residues required for catalysis
      (UniProt CAUTION).'
    action: ACCEPT
    reason: 'Correct, important negation: a catalytically dead family member. Retain.'
    supported_by:
    - reference_id: file:human/CRMP1/CRMP1-uniprot.txt
      supporting_text: Lacks most of the conserved residues that are essential for
- term:
    id: GO:0005737
    label: cytoplasm
  evidence_type: IEA
  original_reference_id: GO_REF:0000120
  qualifier: located_in
  review:
    summary: 'cytoplasm: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).'
    action: ACCEPT
    reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
- term:
    id: GO:0005813
    label: centrosome
  evidence_type: IEA
  original_reference_id: GO_REF:0000044
  qualifier: located_in
  review:
    summary: 'centrosome: a secondary/broad or context-specific localization for CRMP1.'
    action: KEEP_AS_NON_CORE
    reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
- term:
    id: GO:0005819
    label: spindle
  evidence_type: IEA
  original_reference_id: GO_REF:0000044
  qualifier: located_in
  review:
    summary: 'spindle: a secondary/broad or context-specific localization for CRMP1.'
    action: KEEP_AS_NON_CORE
    reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
- term:
    id: GO:0005856
    label: cytoskeleton
  evidence_type: IEA
  original_reference_id: GO_REF:0000044
  qualifier: located_in
  review:
    summary: 'cytoskeleton: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).'
    action: ACCEPT
    reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
- term:
    id: GO:0016787
    label: hydrolase activity
  evidence_type: IEA
  original_reference_id: GO_REF:0000002
  qualifier: enables
  review:
    summary: Positive 'hydrolase activity' propagated from the metallo-hydrolase fold signature (IEA).
      CRMP1 lacks the catalytic metal site, and the curated dihydropyrimidinase activity is itself NOT-ed.
    action: REMOVE
    reason: 'Domain/phylogenetic over-propagation refutable on biological grounds: the metal-cofactor-binding
      residues are absent (UniProt CAUTION), so no metallo-hydrolase activity is supported; the real function
      is a non-catalytic cytoskeletal regulator. Same basis as the DPYSL5 review.'
    supported_by:
    - reference_id: file:human/CRMP1/CRMP1-uniprot.txt
      supporting_text: Lacks most of the conserved residues that are essential for
    - reference_id: file:human/CRMP1/CRMP1-uniprot.txt
      supporting_text: Belongs to the metallo-dependent hydrolases superfamily.
- term:
    id: GO:0016810
    label: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
  evidence_type: IEA
  original_reference_id: GO_REF:0000002
  qualifier: enables
  review:
    summary: Positive 'hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds' propagated
      from the metallo-hydrolase fold signature (IEA). CRMP1 lacks the catalytic metal site, and the curated
      dihydropyrimidinase activity is itself NOT-ed.
    action: REMOVE
    reason: 'Domain/phylogenetic over-propagation refutable on biological grounds: the metal-cofactor-binding
      residues are absent (UniProt CAUTION), so no metallo-hydrolase activity is supported; the real function
      is a non-catalytic cytoskeletal regulator. Same basis as the DPYSL5 review.'
    supported_by:
    - reference_id: file:human/CRMP1/CRMP1-uniprot.txt
      supporting_text: Lacks most of the conserved residues that are essential for
    - reference_id: file:human/CRMP1/CRMP1-uniprot.txt
      supporting_text: Belongs to the metallo-dependent hydrolases superfamily.
- term:
    id: GO:0030426
    label: growth cone
  evidence_type: IEA
  original_reference_id: GO_REF:0000120
  qualifier: located_in
  review:
    summary: 'growth cone: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).'
    action: ACCEPT
    reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
- term:
    id: GO:0043204
    label: perikaryon
  evidence_type: IEA
  original_reference_id: GO_REF:0000044
  qualifier: located_in
  review:
    summary: 'perikaryon: a secondary/broad or context-specific localization for CRMP1.'
    action: KEEP_AS_NON_CORE
    reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:15383276
  qualifier: enables
  review:
    summary: Specific protein interaction (PMID:15383276); supports CRMP1's scaffold/adapter role but
      the generic 'protein binding' term is uninformative.
    action: KEEP_AS_NON_CORE
    reason: Real interaction kept as non-core supporting evidence; the informative function is captured
      in core_functions.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:16169070
  qualifier: enables
  review:
    summary: Specific protein interaction (PMID:16169070); supports CRMP1's scaffold/adapter role but
      the generic 'protein binding' term is uninformative.
    action: KEEP_AS_NON_CORE
    reason: Real interaction kept as non-core supporting evidence; the informative function is captured
      in core_functions.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:21900206
  qualifier: enables
  review:
    summary: Specific protein interaction (PMID:21900206); supports CRMP1's scaffold/adapter role but
      the generic 'protein binding' term is uninformative.
    action: KEEP_AS_NON_CORE
    reason: Real interaction kept as non-core supporting evidence; the informative function is captured
      in core_functions.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:24722188
  qualifier: enables
  review:
    summary: Specific protein interaction (PMID:24722188); supports CRMP1's scaffold/adapter role but
      the generic 'protein binding' term is uninformative.
    action: KEEP_AS_NON_CORE
    reason: Real interaction kept as non-core supporting evidence; the informative function is captured
      in core_functions.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:25416956
  qualifier: enables
  review:
    summary: Generic 'protein binding' from a high-throughput interactome screen (PMID:25416956).
    action: MARK_AS_OVER_ANNOTATED
    reason: High-throughput protein binding is uninformative about molecular function (curation guideline).
      Over-annotation.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:32296183
  qualifier: enables
  review:
    summary: Generic 'protein binding' from a high-throughput interactome screen (PMID:32296183).
    action: MARK_AS_OVER_ANNOTATED
    reason: High-throughput protein binding is uninformative about molecular function (curation guideline).
      Over-annotation.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:32814053
  qualifier: enables
  review:
    summary: Generic 'protein binding' from a high-throughput interactome screen (PMID:32814053).
    action: MARK_AS_OVER_ANNOTATED
    reason: High-throughput protein binding is uninformative about molecular function (curation guideline).
      Over-annotation.
- term:
    id: GO:0042802
    label: identical protein binding
  evidence_type: IPI
  original_reference_id: PMID:24722188
  qualifier: enables
  review:
    summary: 'Identical protein binding: CRMP1 forms homo- and hetero-tetramers with other CRMP-family
      members.'
    action: KEEP_AS_NON_CORE
    reason: Real oligomerization but a generic term; non-core.
    supported_by:
    - reference_id: file:human/CRMP1/CRMP1-uniprot.txt
      supporting_text: Homotetramer
- term:
    id: GO:0042802
    label: identical protein binding
  evidence_type: IPI
  original_reference_id: PMID:25416956
  qualifier: enables
  review:
    summary: 'Identical protein binding: CRMP1 forms homo- and hetero-tetramers with other CRMP-family
      members.'
    action: KEEP_AS_NON_CORE
    reason: Real oligomerization but a generic term; non-core.
    supported_by:
    - reference_id: file:human/CRMP1/CRMP1-uniprot.txt
      supporting_text: Homotetramer
- term:
    id: GO:0015629
    label: actin cytoskeleton
  evidence_type: IEA
  original_reference_id: GO_REF:0000107
  qualifier: located_in
  review:
    summary: 'actin cytoskeleton: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).'
    action: ACCEPT
    reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
- term:
    id: GO:0030425
    label: dendrite
  evidence_type: IEA
  original_reference_id: GO_REF:0000107
  qualifier: located_in
  review:
    summary: 'dendrite: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).'
    action: ACCEPT
    reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
- term:
    id: GO:0043025
    label: neuronal cell body
  evidence_type: IEA
  original_reference_id: GO_REF:0000107
  qualifier: located_in
  review:
    summary: 'neuronal cell body: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).'
    action: ACCEPT
    reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
- term:
    id: GO:0051219
    label: phosphoprotein binding
  evidence_type: IEA
  original_reference_id: GO_REF:0000107
  qualifier: enables
  review:
    summary: 'phosphoprotein binding: a specific molecular interaction consistent with CRMP1''s cytoskeletal-adapter
      role.'
    action: KEEP_AS_NON_CORE
    reason: Real, specific binding; informative but secondary to the core cytoskeletal-regulation function.
      Non-core.
- term:
    id: GO:0071526
    label: semaphorin-plexin signaling pathway
  evidence_type: IEA
  original_reference_id: GO_REF:0000107
  qualifier: involved_in
  review:
    summary: 'semaphorin-plexin signaling pathway: a core neuronal/cytoskeletal process for the CRMP family
      (CRMP1 acts in semaphorin-driven cytoskeleton remodeling and neurite/axon development).'
    action: ACCEPT
    reason: Core biological process for a CRMP-family cytoskeletal regulator.
    supported_by:
    - reference_id: file:human/CRMP1/CRMP1-uniprot.txt
      supporting_text: semaphorin
- term:
    id: GO:0098793
    label: presynapse
  evidence_type: IEA
  original_reference_id: GO_REF:0000107
  qualifier: is_active_in
  review:
    summary: 'presynapse: a secondary/broad or context-specific localization for CRMP1.'
    action: KEEP_AS_NON_CORE
    reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
- term:
    id: GO:0098794
    label: postsynapse
  evidence_type: IEA
  original_reference_id: GO_REF:0000107
  qualifier: is_active_in
  review:
    summary: 'postsynapse: a secondary/broad or context-specific localization for CRMP1.'
    action: KEEP_AS_NON_CORE
    reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
- term:
    id: GO:0150052
    label: regulation of postsynapse assembly
  evidence_type: IEA
  original_reference_id: GO_REF:0000107
  qualifier: involved_in
  review:
    summary: 'Regulation of postsynapse assembly (IEA, ortholog transfer): a peripheral, electronically
      inferred role, not an established core CRMP1 function.'
    action: KEEP_AS_NON_CORE
    reason: Ortholog-transferred electronic (IEA) annotation with no CRMP1-specific evidence for postsynaptic
      assembly regulation; demoted to non-core for consistency with the postsynapse (GO:0098794) localization,
      which is also KEEP_AS_NON_CORE.
- term:
    id: GO:0005813
    label: centrosome
  evidence_type: IDA
  original_reference_id: GO_REF:0000052
  qualifier: located_in
  review:
    summary: 'centrosome: a secondary/broad or context-specific localization for CRMP1.'
    action: KEEP_AS_NON_CORE
    reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
- term:
    id: GO:0005829
    label: cytosol
  evidence_type: IDA
  original_reference_id: GO_REF:0000052
  qualifier: located_in
  review:
    summary: 'cytosol: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).'
    action: ACCEPT
    reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
- term:
    id: GO:0005737
    label: cytoplasm
  evidence_type: EXP
  original_reference_id: PMID:11562390
  qualifier: located_in
  review:
    summary: 'cytoplasm: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).'
    action: ACCEPT
    reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
- term:
    id: GO:0043204
    label: perikaryon
  evidence_type: ISS
  original_reference_id: GO_REF:0000024
  qualifier: located_in
  review:
    summary: 'perikaryon: a secondary/broad or context-specific localization for CRMP1.'
    action: KEEP_AS_NON_CORE
    reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
- term:
    id: GO:0030496
    label: midbody
  evidence_type: IDA
  original_reference_id: PMID:19799413
  qualifier: located_in
  review:
    summary: 'midbody: a secondary/broad or context-specific localization for CRMP1.'
    action: KEEP_AS_NON_CORE
    reason: Plausible but non-core (broad term, division-/synapse-specific, or high-throughput proteomics).
- term:
    id: GO:0010977
    label: negative regulation of neuron projection development
  evidence_type: IGI
  original_reference_id: PMID:25358863
  qualifier: involved_in
  review:
    summary: 'negative regulation of neuron projection development: a core neuronal/cytoskeletal process
      for the CRMP family (CRMP1 acts in semaphorin-driven cytoskeleton remodeling and neurite/axon development).'
    action: ACCEPT
    reason: Core biological process for a CRMP-family cytoskeletal regulator.
- term:
    id: GO:0031005
    label: filamin binding
  evidence_type: IPI
  original_reference_id: PMID:25358863
  qualifier: enables
  review:
    summary: 'filamin binding: a specific molecular interaction consistent with CRMP1''s cytoskeletal-adapter
      role.'
    action: ACCEPT
    reason: Filamin binding is a specific, experimentally demonstrated interaction (PMID:25358863) central
      to this CRMP's cytoskeletal-adapter role; retained as the representative core binding molecular
      function.
- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-399951
  qualifier: located_in
  review:
    summary: 'cytosol: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).'
    action: ACCEPT
    reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-399944
  qualifier: located_in
  review:
    summary: 'cytosol: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).'
    action: ACCEPT
    reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-399947
  qualifier: located_in
  review:
    summary: 'cytosol: a core subcellular location for CRMP1 (cytoplasmic/cytoskeletal CRMP).'
    action: ACCEPT
    reason: Correct core localization for a cytoskeleton-associated cytoplasmic protein.
- term:
    id: GO:0006139
    label: nucleobase-containing compound metabolic process
  evidence_type: TAS
  original_reference_id: PMID:8973361
  qualifier: involved_in
  review:
    summary: Nucleobase-containing compound metabolic process (TAS, PMID:8973361) tied to the now-defunct
      dihydropyrimidinase activity claim.
    action: REMOVE
    reason: Legacy process annotation dependent on the superseded enzymatic activity; remove, consistent
      with the NOT|pyrimidine catabolism.
    supported_by:
    - reference_id: file:human/CRMP1/CRMP1-uniprot.txt
      supporting_text: Lacks most of the conserved residues that are essential for
- term:
    id: GO:0007399
    label: nervous system development
  evidence_type: TAS
  original_reference_id: PMID:8973361
  qualifier: involved_in
  review:
    summary: 'nervous system development: a core neuronal/cytoskeletal process for the CRMP family (CRMP1
      acts in semaphorin-driven cytoskeleton remodeling and neurite/axon development).'
    action: ACCEPT
    reason: Core biological process for a CRMP-family cytoskeletal regulator.
references:
- id: GO_REF:0000002
  title: GO annotation through association of InterPro records with GO terms
  findings: []
- id: GO_REF:0000024
  title: Manual transfer of experimentally-verified annotations to orthologs by curator judgment
  findings: []
- id: GO_REF:0000033
  title: Annotation inferences using phylogenetic trees
  findings: []
- id: GO_REF:0000044
  title: GO annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping
  findings: []
- id: GO_REF:0000052
  title: GO annotation based on curation of immunofluorescence data (HPA)
  findings: []
- id: GO_REF:0000107
  title: Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl
    Compara
  findings: []
- id: GO_REF:0000120
  title: Combined Automated Annotation using Multiple IEA Methods
  findings: []
- id: file:human/CRMP1/CRMP1-uniprot.txt
  title: UniProt entry for CRMP1
  findings:
  - statement: CRMP1 lacks the metal-cofactor-binding residues required for dihydropyrimidinase activity.
    supporting_text: Lacks most of the conserved residues that are essential for
  - statement: CRMP1 belongs to the metallo-dependent hydrolase superfamily.
    supporting_text: Belongs to the metallo-dependent hydrolases superfamily.
- id: PMID:11562390
  title: Collapsin response mediator protein-1 and the invasion and metastasis of cancer cells.
  findings: []
- id: PMID:15383276
  title: A protein interaction network links GIT1, an enhancer of huntingtin aggregation, to Huntington's
    disease.
  findings: []
- id: PMID:16169070
  title: 'A human protein-protein interaction network: a resource for annotating the proteome.'
  findings: []
- id: PMID:19799413
  title: From midbody protein-protein interaction network construction to novel regulators in cytokinesis.
  findings: []
- id: PMID:21900206
  title: A directed protein interaction network for investigating intracellular signal transduction.
  findings: []
- id: PMID:24722188
  title: Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors
    for autism.
  findings: []
- id: PMID:25358863
  title: Amino- and carboxyl-terminal domains of Filamin-A interact with CRMP1 to mediate Sema3A signalling.
  findings: []
- id: PMID:25416956
  title: A proteome-scale map of the human interactome network.
  findings: []
- id: PMID:32296183
  title: A reference map of the human binary protein interactome.
  findings: []
- id: PMID:32814053
  title: Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread
    Protein Aggregation in Affected Brains.
  findings: []
- id: PMID:8973361
  title: A novel gene family defined by human dihydropyrimidinase and three related proteins with differential
    tissue distribution.
  findings: []
- id: Reactome:R-HSA-399944
  title: Reactome pathway (CRMP/semaphorin signalling)
  findings: []
- id: Reactome:R-HSA-399947
  title: Reactome pathway (CRMP/semaphorin signalling)
  findings: []
- id: Reactome:R-HSA-399951
  title: Reactome pathway (CRMP/semaphorin signalling)
  findings: []
aliases:
- DPYSL1
- CRMP-1
- DRP-1
- ULIP-3
- Collapsin response mediator protein 1
core_functions:
- description: Catalytically inactive CRMP-family cytoskeletal regulator mediating Sema3A-induced growth-cone
    collapse and neuron projection development via the semaphorin-plexin pathway.
  directly_involved_in:
  - id: GO:0071526
    label: semaphorin-plexin signaling pathway
  - id: GO:0007399
    label: nervous system development
  locations:
  - id: GO:0005829
    label: cytosol
  - id: GO:0030426
    label: growth cone
  supported_by:
  - reference_id: file:human/CRMP1/CRMP1-uniprot.txt
    supporting_text: Lacks most of the conserved residues that are essential for
  molecular_function:
    id: GO:0031005
    label: filamin binding
suggested_questions:
- question: By what mechanism does CRMP1 mediate Sema3A-induced growth-cone collapse, and how does this
    relate to its reported invasion-suppressor activity in cancer?
suggested_experiments:
- hypothesis: CRMP1's Sema3A growth-cone-collapse function underlies its invasion-suppressor activity.
  description: Compare Sema3A-induced growth-cone collapse and tumour-cell invasion in cells expressing
    wild-type vs signaling-deficient CRMP1.