CYC1

UniProt ID: P08574
Organism: Homo sapiens
Review Status: COMPLETE
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Gene Description

CYC1 encodes cytochrome c1, a heme c1-containing catalytic subunit of mitochondrial respiratory chain complex III (cytochrome bc1 complex; ubiquinol:cytochrome c oxidoreductase; EC 7.1.1.8). It is a nuclear-encoded inner mitochondrial membrane protein anchored by a single C-proximal transmembrane helix, with the heme-bearing globular domain projecting into the intermembrane space. Within the Q-cycle of complex III, cytochrome c1 accepts an electron from the Rieske 2Fe-2S protein (UQCRFS1) and donates it to soluble cytochrome c, enabling subsequent electron flow to complex IV. Cytochrome c1 itself is not an independent enzyme: its molecular function is subunit-specific electron transfer activity (GO:0009055), and it contributes to the complex-level quinol-cytochrome-c reductase activity (GO:0008121). Complex III functions as an obligate homodimer in the OXPHOS pathway and is embedded in respirasome-type supercomplexes. Biallelic pathogenic CYC1 variants (e.g. p.Trp96Cys, p.Leu215Phe, p.Arg317Trp) cause isolated mitochondrial complex III deficiency (MC3DN6; OMIM 615453) with insulin-responsive hyperglycemia, recurrent ketoacidosis/lactic acidosis, and (more recently) leukoencephalopathy/optic neuropathy-like presentations. Maturation requires mitochondrial import, holocytochrome c synthase (HCCS)-dependent heme c attachment, and IMMP2L-mediated cleavage of the retained transit peptide.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0045275 respiratory chain complex III
IBA
GO_REF:0000033
ACCEPT
Summary: Phylogenetic propagation correctly assigns CYC1 to respiratory chain complex III. This is the defining cellular component for cytochrome c1 and a core annotation supported by multiple independent lines of evidence (genetics, structural biology, ComplexPortal).
Reason: Cytochrome c1 is one of the three evolutionarily conserved catalytic subunits of the bc1 complex, alongside cytochrome b and the Rieske Fe-S protein. Both falcon and openai deep research, and the ComplexPortal IPI annotation (PMID:28844695), independently support this assignment.
Supporting Evidence:
file:human/CYC1/CYC1-deep-research-falcon.md
Human **CYC1** (UniProt **P08574**) encodes **cytochrome c1**, a **nuclear-encoded core catalytic subunit of mitochondrial respiratory chain complex III (cytochrome bc1 / ubiquinol:cytochrome c oxidoreductase)**.
PMID:39053894
MT‐CYB, the Rieske Fe‐S protein (UQCRFS1), and cytochrome c1 (CYC1) are the catalytic subunits.
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
IBA
GO_REF:0000033
ACCEPT
Summary: Phylogenetic propagation of the canonical Complex III biological process. CYC1 directly participates in this process by accepting electrons from the Rieske 2Fe-2S center and donating them to soluble cytochrome c. Core annotation.
Reason: This is the precise BP term for the reaction CYC1 mediates as part of the bc1 complex. Falcon explicitly describes the Q-cycle path Rieske -> cytochrome c1 -> cytochrome c as the canonical electron transfer sequence in which CYC1 is the IMS-facing exit point.
Supporting Evidence:
file:human/CYC1/CYC1-deep-research-falcon.md
One electron transfers from Qo to the **Rieske 2Fe–2S** center, then to **cytochrome c1**, then to **cytochrome c**.
GO:0005743 mitochondrial inner membrane
IEA
GO_REF:0000120
ACCEPT
Summary: UniProt combined-IEA annotation correctly places CYC1 at the inner mitochondrial membrane. CYC1 is a single-pass IMM protein with a C-proximal transmembrane helix; the heme-bearing domain projects into the intermembrane space. Core localization.
Reason: Confirmed by experimental IDA (PMID:28844695, ComplexPortal), Reactome TAS, and structural biology. Falcon notes the explicit topology with a single C-proximal transmembrane segment.
Supporting Evidence:
file:human/CYC1/CYC1-deep-research-falcon.md
CYC1 is a **mitochondrial inner membrane** protein. Its **heme-containing domain projects into the intermembrane space**, where it meets cytochrome c; the protein is **anchored by a single C-proximal transmembrane segment**.
GO:0008121 quinol-cytochrome-c reductase activity
IEA
GO_REF:0000120
ACCEPT
Summary: This complex-level molecular function (EC 7.1.1.8) is the activity of the bc1 holoenzyme. CYC1 does not catalyze quinol oxidation independently (the Qo/Qi sites are in cytochrome b and quinol oxidation requires the Rieske protein), but it is an obligate catalytic subunit and contributes to this activity. Retain as a core annotation in the contributes_to sense.
Reason: Falcon notes CYC1's product is "**not an independent metabolic enzyme** in isolation; its primary function is as an **electron-transfer subunit within complex III**." The complex-level MF is appropriate as a contributes_to function, captured under core_functions.
Supporting Evidence:
file:human/CYC1/CYC1-deep-research-falcon.md
CYC1's gene product (cytochrome c1) is **not an independent metabolic enzyme** in isolation; its primary function is as an **electron-transfer subunit within complex III**.
GO:0009055 electron transfer activity
IEA
GO_REF:0000002
ACCEPT
Summary: Subunit-specific molecular function of cytochrome c1: heme c1 mediates rapid electron transfer (predicted up to ~8.3 x 10^6 s^-1) from the Rieske 2Fe-2S center to soluble cytochrome c. This is CYC1's independently-enabled molecular function and the primary MF term for the gene.
Reason: InterPro mapping of the Cyt_c1 domain to electron transfer activity is biophysically and structurally accurate. Falcon documents the edge-to-edge geometry (~9.4 Γ…) and tunneling rates consistent with single-electron transfer.
Supporting Evidence:
file:human/CYC1/CYC1-deep-research-falcon.md
cytochrome c–cytochrome c1 encounter geometry as ~**17.4 Γ… Fe-to-Fe** (β‰ˆ**9.4 Γ… edge-to-edge**) and reports predicted electron-transfer rates up to **~8.3 Γ— 10^6 sβˆ’1**
GO:0016020 membrane
IEA
GO_REF:0000117
MARK AS OVER ANNOTATED
Summary: Generic "membrane" annotation is too unspecific given the well-supported mitochondrial inner membrane localization captured by other annotations (IDA, IEA, TAS). Overannotation - the more specific GO:0005743 should be used instead.
Reason: Per project curation guidelines, when a more specific compartment term is supported, the generic "membrane" term should not be a primary annotation. Falcon and openai both consistently place CYC1 at the inner mitochondrial membrane.
GO:0020037 heme binding
IEA
GO_REF:0000002
ACCEPT
Summary: Heme binding is a core molecular function of CYC1. Cytochrome c1 contains a single covalently attached c-type heme (heme c1) ligated via the conserved CXXCH motif by holocytochrome c synthase (HCCS).
Reason: Defining feature of the cytochrome c1 fold. Falcon: cytochrome c1 contains "a **single c-type heme, heme c1**, covalently attached and exposed for rapid electron transfer to cytochrome c."
Supporting Evidence:
file:human/CYC1/CYC1-deep-research-falcon.md
Cytochrome c1 contains a **single c-type heme, heme c1**, covalently attached and exposed for rapid electron transfer to cytochrome c.
GO:0046872 metal ion binding
IEA
GO_REF:0000043
MARK AS OVER ANNOTATED
Summary: Generic "metal ion binding" annotation is redundant with the more informative "heme binding" (GO:0020037), which already captures the Fe coordination by the c-type heme. Also derived via GO_REF:0000043 (UniProt keyword mapping) which has been deprecated for newer annotations.
Reason: Heme binding subsumes the Fe coordination biology. Per project guidelines, avoid generic terms when a precise term exists. No evidence CYC1 binds metal ions outside the heme c1 cofactor.
GO:1902600 proton transmembrane transport
IEA
GO_REF:0000108
MARK AS OVER ANNOTATED
Summary: Proton translocation by complex III is performed by the Q-cycle chemistry at the Qo and Qi sites of cytochrome b, not by CYC1 itself. This term was inferred logically from EC 7.1.1.8 (assigned to CYC1 via GO:0008121) but does not reflect a CYC1 subunit-specific activity. Overannotation at the subunit level.
Reason: Falcon and openai both make clear that "**cytochrome c1 itself does not directly bind quinone or pump protons**" - CYC1's role is purely electron transfer. Inter-ontology logical inference from EC 7.1.1.8 propagates this whole-complex activity inappropriately to the cyt c1 subunit.
Supporting Evidence:
file:human/CYC1/CYC1-deep-research-falcon.md
Although cytochrome c1 itself does not directly bind quinone or pump protons, it is an indispensable part of this proton-coupled electron transfer.
GO:0005515 protein binding
IPI
PMID:17500595
Huntingtin interacting proteins are genetic modifiers of neu...
MARK AS OVER ANNOTATED
Summary: IntAct interaction with huntingtin (HTT, P42858) from a yeast-two-hybrid screen of Huntingtin interactors. Generic "protein binding" is uninformative and likely represents either an aggregation-related capture (HTT polyQ pulldown) or a high-throughput false positive rather than a physiological CYC1 binding partner.
Reason: Per project curation guidelines, the generic "protein binding" (GO:0005515) term should be avoided in favor of more specific MF terms. CYC1's physiologically meaningful partners are its complex III co-subunits and cytochrome c, all of which are captured under respiratory chain complex III membership.
GO:0005515 protein binding
IPI
PMID:28514442
Architecture of the human interactome defines protein commun...
MARK AS OVER ANNOTATED
Summary: IntAct interaction with KRT9 (P14927) from a large-scale human interactome map (BioPlex/Huttlin). Likely a high-throughput affinity capture artifact (keratin contamination is a well-known proteomic nuisance). Generic "protein binding" is uninformative for CYC1.
Reason: Generic protein binding term, with the specific interactor being a common HT-AP-MS contaminant. CYC1's true binding partners (Rieske protein, cytochrome b, cytochrome c) are well captured by the respiratory chain complex III membership annotation.
GO:0005515 protein binding
IPI
PMID:32814053
Interactome Mapping Provides a Network of Neurodegenerative ...
MARK AS OVER ANNOTATED
Summary: IntAct interactions from a neurodegenerative-disease interactome screen (HTT/P42858, ATXN1/Q16342, ATXN3-3/Q8IWZ3-3). All partners are polyQ disease proteins; capture likely reflects co-aggregation or screen-specific bait rather than a physiological CYC1 binding function. Generic "protein binding" is uninformative.
Reason: Same rationale as other IPI protein binding annotations: generic term, non-physiological partners. CYC1 has no established direct role in polyQ-aggregate biology.
GO:0005515 protein binding
IPI
PMID:33961781
Dual proteome-scale networks reveal cell-specific remodeling...
MARK AS OVER ANNOTATED
Summary: IntAct interaction with KRT9 (P14927) from BioPlex 3.0 cell-specific interactome maps. Same likely keratin contamination as PMID:28514442. Generic "protein binding" is uninformative.
Reason: Generic protein binding term, partner likely an AP-MS contaminant. Per project guidelines, prefer more specific MF terms.
GO:0005739 mitochondrion
IEA
GO_REF:0000107
MARK AS OVER ANNOTATED
Summary: Orthology-transferred annotation from mouse Cyc1. While true at a coarse level, the more specific mitochondrial inner membrane (GO:0005743) localization is well-supported and is the appropriate primary location.
Reason: Mitochondrial inner membrane (GO:0005743) is the precise compartment; "mitochondrion" is too broad.
GO:0033762 response to glucagon
IEA
GO_REF:0000107
REMOVE
Summary: Orthology-transferred annotation from rat Cyc1 (UniProtKB:D3ZFQ8) via Ensembl Compara. The original rat annotation likely derives from a glucagon-treated proteomics or expression study; this does not reflect a direct biological role of human CYC1 in glucagon signaling. Spurious annotation propagated by orthology.
Reason: Neither falcon nor openai deep research describes any role for CYC1 in glucagon response. CYC1 is a constitutive OXPHOS structural/redox subunit; "response to glucagon" is at best a transcriptional/abundance correlate of OXPHOS in glucagon-stimulated tissues and not a function of cytochrome c1. No human experimental support exists.
GO:0045275 respiratory chain complex III
IEA
GO_REF:0000107
ACCEPT
Summary: Orthology-transferred complex membership. Same conclusion as the IBA and IPI annotations - CYC1 is a core subunit of respiratory chain complex III.
Reason: Independent corroboration of the core complex membership annotation.
Supporting Evidence:
file:human/CYC1/CYC1-deep-research-falcon.md
cytochrome c1 is one of the three evolutionarily conserved catalytic subunits together with cytochrome b and the Rieske Fe-S protein.
GO:0005743 mitochondrial inner membrane
IDA
PMID:28844695
Architecture of Human Mitochondrial Respiratory Megacomplex ...
ACCEPT
Summary: Direct experimental localization of CYC1 at the inner mitochondrial membrane via cryo-EM structure determination of the human respiratory megacomplex I2III2IV2 (Guo et al. 2017, ComplexPortal annotation). Highest-confidence evidence for this localization.
Reason: Structural visualization in situ. Core localization annotation.
Supporting Evidence:
PMID:28844695
Architecture of Human Mitochondrial Respiratory Megacomplex I(2)III(2)IV(2).
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
NAS
PMID:28844695
Architecture of Human Mitochondrial Respiratory Megacomplex ...
ACCEPT
Summary: ComplexPortal NAS annotation. The biological process is the canonical Complex III function and CYC1 is a direct participant. Core annotation.
Reason: Consistent with IBA and with all primary biochemical and structural literature on cytochrome c1.
Supporting Evidence:
file:human/CYC1/CYC1-deep-research-falcon.md
CYC1 acts specifically within the electron transport chain (ETC) as part of complex III, connecting the membrane quinone pool (CoQ/QH2) to the cytochrome c pool
GO:0045275 respiratory chain complex III
IPI
PMID:28844695
Architecture of Human Mitochondrial Respiratory Megacomplex ...
ACCEPT
Summary: ComplexPortal IPI annotation from structural identification of CYC1 as a subunit of the megacomplex I2III2IV2. Core complex membership.
Reason: Direct structural evidence places CYC1 in the dimeric Complex III within the respirasome.
Supporting Evidence:
PMID:28844695
Architecture of Human Mitochondrial Respiratory Megacomplex I(2)III(2)IV(2).
GO:0045333 cellular respiration
NAS
PMID:28844695
Architecture of Human Mitochondrial Respiratory Megacomplex ...
KEEP AS NON CORE
Summary: Cellular respiration is a parent process of mitochondrial electron transport (GO:0006122) and oxidative phosphorylation. True but too general - the specific GO:0006122 already captures CYC1's role. Retain as a peripheral/non-core annotation.
Reason: Technically correct but redundant with the more precise GO:0006122 and the complex III membership annotations.
GO:0005739 mitochondrion
HTP
PMID:34800366
Quantitative high-confidence human mitochondrial proteome an...
MARK AS OVER ANNOTATED
Summary: High-throughput mitochondrial proteome profiling. Confirms mitochondrial localization but at a level less specific than the inner-membrane annotations. Overannotation at the parent compartment.
Reason: Mitochondrial inner membrane (GO:0005743) is the appropriate compartment annotation; "mitochondrion" is too broad given strong evidence for IMM localization.
GO:0016020 membrane
HDA
PMID:19946888
Defining the membrane proteome of NK cells.
MARK AS OVER ANNOTATED
Summary: High-throughput membrane proteome of NK cells. Generic membrane is too unspecific given strong evidence for inner mitochondrial membrane localization.
Reason: GO:0005743 captures the precise compartment. HTP membrane proteome studies cannot distinguish IMM from other membranes.
GO:0005634 nucleus
HDA
PMID:21630459
Proteomic characterization of the human sperm nucleus.
REMOVE
Summary: High-throughput sperm-nucleus proteome (Asia et al.). Detection of CYC1 in a sperm-nucleus fraction is almost certainly mitochondrial contamination (sperm contain a mitochondrial sheath that fractionates with nuclear preparations) rather than a genuine nuclear localization. No biological role for CYC1 in the nucleus is supported by any primary literature or by either deep research report.
Reason: Cytochrome c1 has no plausible nuclear function. Its mature form is targeted to mitochondria via an N-terminal cleaved presequence, anchored to the inner mitochondrial membrane, and matures via HCCS-dependent heme c attachment in the IMS. Falcon: "CYC1 is a **mitochondrial inner membrane** protein." This annotation is an HT-proteomics artifact.
Supporting Evidence:
file:human/CYC1/CYC1-deep-research-falcon.md
CYC1 is a **mitochondrial inner membrane** protein. Its **heme-containing domain projects into the intermembrane space**
GO:0005739 mitochondrion
HDA
PMID:20833797
Phosphoproteome analysis of functional mitochondria isolated...
MARK AS OVER ANNOTATED
Summary: High-throughput mitochondrial phosphoproteome of human muscle. Confirms mitochondrial localization but at parent-compartment level.
Reason: GO:0005743 (mitochondrial inner membrane) is the precise compartment.
GO:0005743 mitochondrial inner membrane
TAS
Reactome:R-HSA-164651
ACCEPT
Summary: Reactome TAS for the human "Electron transfer from ubiquinol to cytochrome c of complex III" reaction places CYC1 at the inner mitochondrial membrane. Core localization.
Reason: Reactome's biochemical reaction model is consistent with all structural and biochemical evidence for cytochrome c1.
GO:0005743 mitochondrial inner membrane
TAS
Reactome:R-HSA-9906017
ACCEPT
Summary: Reactome TAS for the UQCRFS1 maturation pathway (peptidase cleavage of the UQCRFS1 N-terminal fragment) places CYC1 at the IMM as part of the maturing Complex III. Consistent core localization.
Reason: Reactome pathway places CYC1 within Complex III at the IMM during complex assembly/maturation.
GO:0005743 mitochondrial inner membrane
TAS
Reactome:R-HSA-9906042
ACCEPT
Summary: Reactome TAS for the TTC19-mediated clearance of UQCRFS1 fragments from Complex III. Places CYC1 at the IMM as part of Complex III. Core localization.
Reason: Same compartment as confirmed by structural, IDA, and other TAS evidence.
GO:0005739 mitochondrion
TAS
PMID:2536365
Structural organization of the human mitochondrial cytochrom...
MARK AS OVER ANNOTATED
Summary: Traceable author statement from the original CYC1 gene cloning paper (Suzuki et al. 1989) describing CYC1 as a mitochondrial cytochrome c1 gene. While correct, "mitochondrion" is less specific than the well-supported inner mitochondrial membrane annotation.
Reason: GO:0005743 (mitochondrial inner membrane) is the appropriate, more specific compartment; "mitochondrion" should not be the primary location annotation.

Core Functions

CYC1 (cytochrome c1) is a nuclear-encoded catalytic subunit of the mitochondrial cytochrome bc1 complex (Complex III, EC 7.1.1.8). Its subunit-specific molecular function is electron transfer activity (GO:0009055): the covalently attached c-type heme (heme c1, ligated via the conserved CXXCH motif by HCCS) accepts a single electron from the Rieske 2Fe-2S protein (UQCRFS1) and donates it to soluble cytochrome c, enabling rapid heme-to-heme tunneling (~17.4 Γ… Fe-to-Fe; predicted rates up to ~8.3 x 10^6 s^-1). This subunit-level activity contributes to the complex-level quinol-cytochrome-c reductase activity (GO:0008121) of the bc1 holoenzyme, which oxidizes ubiquinol and reduces cytochrome c while contributing four protons per Q oxidized to the intermembrane space via the Q-cycle. The biological process CYC1 directly participates in is mitochondrial electron transport, ubiquinol to cytochrome c (GO:0006122). CYC1 is located at the mitochondrial inner membrane (GO:0005743), anchored by a single C-proximal transmembrane helix with its heme-bearing globular domain projecting into the intermembrane space. It functions exclusively as part of respiratory chain complex III (GO:0045275), which operates as an obligate homodimer and assembles into respiratory supercomplexes.

Supporting Evidence:
  • file:human/CYC1/CYC1-deep-research-falcon.md
    CYC1's gene product (cytochrome c1) is **not an independent metabolic enzyme** in isolation; its primary function is as an **electron-transfer subunit within complex III**.
  • file:human/CYC1/CYC1-deep-research-falcon.md
    accepts electrons from the Rieske 2Fe–2S protein during the Q-cycle, and donates electrons to cytochrome c for delivery to complex IV.
  • file:human/CYC1/CYC1-deep-research-falcon.md
    Cytochrome c1 contains a **single c-type heme, heme c1**, covalently attached and exposed for rapid electron transfer to cytochrome c.
  • PMID:28844695
    Architecture of Human Mitochondrial Respiratory Megacomplex I(2)III(2)IV(2).
  • PMID:23910460
    Mutations in CYC1, Encoding Cytochrome c1 Subunit of Respiratory Chain Complex III, Cause Insulin-Responsive Hyperglycemia
  • PMID:39053894
    MT‐CYB, the Rieske Fe‐S protein (UQCRFS1), and cytochrome c1 (CYC1) are the catalytic subunits.

References

Gene Ontology annotation through association of InterPro records with GO terms.
  • InterPro2GO mapping of IPR002326 (Cyt_c1) and IPR036909 (Cyt_c-like domain superfamily) assigns CYC1 the molecular functions electron transfer activity (GO:0009055) and heme binding (GO:0020037), consistent with the protein being the heme c1-bearing subunit of complex III.
Annotation inferences using phylogenetic trees
  • PANTHER phylogenetic propagation across the cytochrome c1 family assigns CYC1 to respiratory chain complex III (GO:0045275) and to mitochondrial electron transport, ubiquinol to cytochrome c (GO:0006122), consistent with the conserved subunit identity from fungal to mammalian bc1 complexes.
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
  • UniProtKB keyword Metal-binding (KW-0479) is mapped to GO:0046872 (metal ion binding). For CYC1 this is redundant with the more specific heme binding (GO:0020037) and represents an over-annotation at the generic MF level.
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara.
  • Compara orthology transfers mouse-derived annotations to human CYC1, including respiratory chain complex III (GO:0045275) and mitochondrion (GO:0005739) which are correct, and response to glucagon (GO:0033762) from rat which is not supported by any direct human evidence and likely reflects a transcriptional/abundance correlate in glucagon-stimulated tissues rather than a CYC1 function.
Automatic assignment of GO terms using logical inference, based on on inter-ontology links.
  • Inter-ontology logical inference propagates proton transmembrane transport (GO:1902600) from EC 7.1.1.8 to CYC1. This is a whole- complex activity (proton release is at the Qo site of cytochrome b) and should not be a subunit-level annotation for cytochrome c1.
Electronic Gene Ontology annotations created by ARBA machine learning models
  • ARBA rule-based annotation assigns CYC1 the broad cellular component term membrane (GO:0016020). More specific evidence (IDA, TAS, IEA) supports mitochondrial inner membrane (GO:0005743) as the correct compartment.
Combined Automated Annotation using Multiple IEA Methods.
  • Combined automated IEA pipelines correctly assign CYC1 the mitochondrial inner membrane location (GO:0005743) and quinol- cytochrome-c reductase activity (GO:0008121), consistent with experimental and structural evidence.
Huntingtin interacting proteins are genetic modifiers of neurodegeneration.
  • Yeast-two-hybrid screen identifies CYC1 as a putative HTT interactor. This generic protein-binding capture does not represent a physiological CYC1 function; the well-established CYC1 partners are its complex III co-subunits and cytochrome c.
Defining the membrane proteome of NK cells.
  • HTP membrane proteome of NK cells detects CYC1 in a membrane fraction. Consistent with the well-established mitochondrial inner membrane localization; the generic "membrane" GO term is over-annotated.
Phosphoproteome analysis of functional mitochondria isolated from resting human muscle reveals extensive phosphorylation of inner membrane protein complexes and enzymes.
  • CYC1 detected in functional mitochondria from human skeletal muscle. Confirms mitochondrial localization; the more specific mitochondrial inner membrane term is appropriate.
Proteomic characterization of the human sperm nucleus.
  • HTP detection of CYC1 in a sperm nuclear fraction. CYC1 is a mitochondrial inner membrane protein and detection in a sperm nuclear fraction almost certainly reflects mitochondrial-sheath contamination rather than genuine nuclear localization.
Structural organization of the human mitochondrial cytochrome c1 gene.
  • Original cloning and characterization of the human CYC1 gene, encoding the mitochondrial cytochrome c1 protein.
Architecture of the human interactome defines protein communities and disease networks.
  • BioPlex affinity purification map reports a CYC1-KRT9 interaction; this is a likely HT-AP-MS contaminant and not a physiological partner.
Architecture of Human Mitochondrial Respiratory Megacomplex I(2)III(2)IV(2).
  • Cryo-EM structure of the human megacomplex I2III2IV2 places CYC1 as a catalytic subunit of dimeric Complex III at the mitochondrial inner membrane, with heme c1 positioned for electron transfer to soluble cytochrome c.
    "Architecture of Human Mitochondrial Respiratory Megacomplex I(2)III(2)IV(2)."
Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains.
  • IntAct interactome screen captures CYC1 with polyQ disease proteins (HTT, ATXN1, ATXN3-3); likely co-aggregation/contamination, not a physiological CYC1 binding function.
Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
  • BioPlex 3.0 cell-specific interactome reports a CYC1-KRT9 interaction; likely an AP-MS contaminant.
Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context.
  • Quantitative human mitochondrial proteome detects CYC1 in the mitochondrion. Mitochondrial inner membrane is the more specific compartment.
Mutations in CYC1, encoding cytochrome c1 subunit of respiratory chain complex III, cause insulin-responsive hyperglycemia.
  • Homozygous p.Trp96Cys and p.Leu215Phe variants cause isolated complex III deficiency with insulin-responsive hyperglycemia and recurrent metabolic crises. CIII/citrate-synthase activities are ~4% (liver), 24% (muscle), 25% (fibroblasts) of controls. Wild-type CYC1 rescues CIII activity in patient cells, providing direct functional evidence that CYC1 is required for complex III enzymatic activity.
    "CIII-to-citrate-synthase activities measured at 4% (liver), 24% (muscle), and 25% (fibroblasts) of controls, and shows that expression of wild-type CYC1 restores complex III activity in patient cells (functional complementation). [as summarized in falcon deep research]"
Pathological variants in nuclear genes causing mitochondrial complex III deficiency: an update.
  • 2024 review consolidates known nuclear genes for complex III deficiency and lists CYC1 (OMIM 615453) as a core subunit gene with four reported cases/families and variants p.Trp96Cys, p.Leu215Phe, and p.Arg317Trp.
    "CYC1 (OMIM 615453) as a core subunit gene with four reported cases/families. [as summarized in falcon deep research]"
The functional significance of mitochondrial respiratory chain supercomplexes.
  • Expert 2023 review of respiratory supercomplexes; emphasizes complex III's obligate homodimer architecture and the Q-cycle role in linking ubiquinol oxidation to cytochrome c reduction.
    "Complex III (CIII) is a central inner-mitochondrial-membrane (IMM) enzyme complex of oxidative phosphorylation (OXPHOS). It transfers electrons from ubiquinol (QH2) to the mobile electron carrier cytochrome c, while contributing to the proton gradient by moving protons to the intermembrane space (IMS) via the Q-cycle mechanism; CIII operates as an obligate homodimer (CIII2). [as summarized in falcon deep research]"
The flexible chain: regulation of structure and activity of ETC complexes defines rate of ATP synthesis and sites of superoxide generation.
  • Biophysical review describes the cytochrome c1-cytochrome c docking geometry (~17.4 Γ… Fe-to-Fe, ~9.4 Γ… edge-to-edge) with predicted tunneling rates up to ~8.3 x 10^6 s^-1 - i.e. CYC1's molecular function is fast single-electron transfer to soluble cytochrome c.
    "cytochrome c-cytochrome c1 encounter geometry as ~17.4 Γ… Fe-to-Fe (~9.4 Γ… edge-to-edge) and reports predicted electron-transfer rates up to ~8.3 x 10^6 s^-1. [as summarized in falcon deep research]"
Defective complex III mitochondrial respiratory chain due to a novel variant in CYC1 gene masquerades acute demyelinating syndrome or Leber hereditary optic neuropathy.
  • Case report of a homozygous p.Arg317Trp CYC1 variant presenting with complex III deficiency mimicking acute demyelinating syndrome or Leber hereditary optic neuropathy, expanding the clinical spectrum of CYC1-related disease.
    "2021 case report reports a homozygous p.Arg317Trp variant and describes a complex III defect presenting with optic/white-matter features that can mimic inflammatory demyelination or optic neuropathy syndromes. [as summarized in falcon deep research]"
IMMP2L enhances the structure and function of mitochondrial GPD2 dehydrogenase.
  • In Immp2l knockout mice, the inner mitochondrial membrane peptidase IMMP2L is required to cleave the transit peptide of cytochrome c1 (Cyc1); uncleaved Cyc1 accumulates and AlphaFold2-Multimer modeling predicts altered Cyc1-Cyb contacts, with respiration reduced ~27% in MEFs and ~31% for succinate-driven kidney respiration.
    "IMMP2L, an inner mitochondrial membrane peptidase, is required to cleave and remove the signal/transit peptide from cytochrome c1 (Cyc1). In the knockout, uncleaved Cyc1 is detected and AlphaFold2-Multimer modeling predicts altered Cyc1-Cyb contacts. [as summarized in falcon deep research]"
Identification of MIMAS, a multifunctional mega-assembly integrating metabolic and respiratory biogenesis factors of mitochondria.
  • Yeast study identifying the MIMAS mega-assembly; links Imp2 (IMMP2L homolog) to cytochrome c1 (Cyt1) processing after hemylation, supporting cytochrome c1 cleavage as a regulated late maturation step.
Reactome:R-HSA-164651
Electron transfer from ubiquinol to cytochrome c of complex III
  • Reactome reaction R-HSA-164651 places CYC1 within Complex III at the inner mitochondrial membrane and shows the electron transfer from ubiquinol to cytochrome c.
Reactome:R-HSA-9906017
Unknown peptidase cleaves UQCRFS1 subunit
  • Reactome pathway for UQCRFS1 N-terminal fragment cleavage during Complex III maturation; CYC1 is part of the IMM-localized complex undergoing this maturation step.
Reactome:R-HSA-9906042
TTC19 clears UQCRFS1 fragments from Complex III
  • Reactome pathway for TTC19-mediated clearance of UQCRFS1 fragments from Complex III; CYC1 is part of the IMM-localized complex.
file:human/CYC1/CYC1-deep-research-openai.md
Deep research report on P08574 (openai o3-deep-research-2025-06-26)
  • Detailed narrative review of CYC1 cytochrome c1 function, structure, maturation by HCCS, role in the Q-cycle as the electron donor to soluble cytochrome c, supercomplex organization, and clinical relevance (MC3DN6, insulin-responsive hyperglycemia).
file:human/CYC1/CYC1-deep-research-falcon.md
Deep research report on P08574 (falcon Edison Scientific Literature)
  • Comprehensive 2024-2025 update on CYC1 function (electron-transfer subunit of complex III), topology (IMM, single C-proximal TM, heme domain in IMS), maturation (HCCS heme attachment, IMMP2L cleavage), and disease (MC3DN6 with p.Trp96Cys, p.Leu215Phe, p.Arg317Trp).

Suggested Questions for Experts

Q: Does retention of an uncleaved CYC1 transit peptide (e.g. on loss of IMMP2L function) reduce complex III enzymatic activity directly, beyond the indirect respiration phenotypes already reported?

Suggested experts: Raymond A. Clarke

Q: What is the spectrum of partial complex III loss tolerated by different human tissues, and why is liver disproportionately affected (CIII activity ~4% of controls) compared with muscle and fibroblasts (~24-25%) in CYC1 p.Trp96Cys/p.Leu215Phe patients?

Suggested experts: Pierre Rustin, Pauline Gaignard

Suggested Experiments

Experiment: Reconstitute purified wild-type and mutant (p.Trp96Cys, p.Leu215Phe, p.Arg317Trp) human cytochrome c1 in vitro (heterologous expression with HCCS or bacterial alternative) and measure stopped-flow electron transfer kinetics from a reduced Rieske head domain to cyt c1, and from cyt c1 to soluble cytochrome c, comparing rate constants and Kd values. Pair with optical-spectroscopic determination of heme c1 midpoint potential.

Hypothesis: Pathogenic CYC1 missense variants destabilize the heme c1 attachment or the cytochrome c docking surface, reducing electron transfer kcat by cytochrome c1 specifically.

Type: in vitro enzymology

Experiment: Engineer an IMMP2L knockout in a human cell line (HEK293T or HeLa) and assay (a) the molecular weight of mature CYC1 by SDS-PAGE/immunoblot and Edman/proteomic N-terminal sequencing; (b) CIII activity (oxygen consumption with rotenone, decylubiquinol-driven cyt c reduction); (c) structure of Complex III by cryo-EM; (d) heme c1 spectral content.

Hypothesis: In human cells, IMMP2L is required to cleave a residual CYC1 transit peptide, and uncleaved CYC1 perturbs cyt c1 - cyt b contacts within Complex III, reducing CIII activity.

Type: cell biology / structural biology

Deep Research

Falcon

(CYC1-deep-research-falcon.md)
this with annotations you find in gene/protein databases, but these can be outdated or inaccurate. Falcon Edison Scientific Literature 21 citations 1 artifacts 2026-05-29T17:42:09.506144

The research report should be a detailed narrative explaining the function, biological processes, and localization of the gene product. Citations should be given for all claims.

You should prioritize authoritative reviews and primary scientific literature when conducting research. You can supplement
this with annotations you find in gene/protein databases, but these can be outdated or inaccurate.

We are specifically interested in the primary function of the gene - for enzymes, what reaction is catalyzed, and what is the substrate specificity? For transporters, what is the substrate? For structural proteins or adapters, what is the broader structural role? For signaling molecules, what is the role in the pathway.

We are interested in where in or outside the cell the gene product carries out its function.

We are also interested in the signaling or biochemical pathways in which the gene functions. We are less interested in broad pleiotropic effects, except where these elucidate the precise role.

Include evidence where possible. We are interested in both experimental evidence as well as inference from structure, evolution, or bioinformatic analysis. Precise studies should be prioritized over high-throughput, where available.

Research report: Human CYC1 (UniProt P08574) β€” cytochrome c1 of mitochondrial complex III

0) Identity verification (critical disambiguation)

The human gene symbol CYC1 in this request corresponds to cytochrome c1, a heme c1–containing catalytic/core subunit of mitochondrial respiratory chain complex III (cytochrome bc1; ubiquinol:cytochrome c oxidoreductase), consistent with UniProt accession P08574. This mapping is supported by both a high-confidence human genetics study and a 2024 expert update on nuclear genes causing complex III deficiency. (gaignard2013mutationsincyc1 pages 1-2, cunatova2024pathologicalvariantsin pages 4-5)

1) Key concepts and definitions (current understanding)

1.1 Complex III (cytochrome bc1 complex; ubiquinol:cytochrome c oxidoreductase)

Complex III (CIII) is a central inner-mitochondrial-membrane (IMM) enzyme complex of oxidative phosphorylation (OXPHOS). It transfers electrons from ubiquinol (QH2) to the mobile electron carrier cytochrome c, while contributing to the proton gradient by moving protons to the intermembrane space (IMS) via the Q-cycle mechanism; CIII operates as an obligate homodimer (CIII2). (kohler2023thefunctionalsignificance pages 1-2)

1.2 The Q-cycle and where cytochrome c1 fits

In the Q-cycle, quinol oxidation at the Qo site yields two electrons that split into two paths. One electron transfers from Qo to the Rieske 2Fe–2S center, then to cytochrome c1, then to cytochrome c. The other electron proceeds through cytochrome b’s hemes toward the Qi site, supporting quinone reduction, while quinol oxidation at Qo is coupled to proton release into the IMS. (bochkova2025theflexiblechain pages 8-9, kohler2023thefunctionalsignificance pages 1-2)

1.3 What CYC1 encodes (functional definition)

CYC1 encodes cytochrome c1, the heme-containing complex III subunit that provides the heme c1 redox cofactor used to accept electrons (from the Rieske protein) and donate them to soluble cytochrome c on the IMS side. (bochkova2025theflexiblechain pages 8-9, osz2025mutationsofthe pages 4-6)

2) Molecular function and biochemical mechanism of CYC1

2.1 Primary function

CYC1’s gene product (cytochrome c1) is not an independent metabolic enzyme in isolation; its primary function is as an electron-transfer subunit within complex III.

Mechanistically, cytochrome c1:
- accepts electrons from the Rieske 2Fe–2S protein during the Q-cycle, and
- donates electrons to cytochrome c for delivery to complex IV. (bochkova2025theflexiblechain pages 8-9)

2.2 Cofactor: heme c1 and fast electron transfer to cytochrome c

Cytochrome c1 contains an exposed heme c1 that supports rapid electron transfer to cytochrome c. A recent biophysical review summarizes the cytochrome c–cytochrome c1 encounter geometry as ~17.4 Γ… Fe-to-Fe (β‰ˆ9.4 Γ… edge-to-edge) and reports predicted electron-transfer rates up to ~8.3 Γ— 10^6 sβˆ’1, consistent with short-range heme-to-heme tunneling requirements. (bochkova2025theflexiblechain pages 9-11)

3) Subcellular localization, topology, and maturation

3.1 Localization and membrane orientation

Human cytochrome c1 is an IMM protein with its functional (heme-containing) domain facing the intermembrane space, consistent with its role donating electrons to soluble cytochrome c in the IMS. The disease genetics study describing pathogenic CYC1 variants explicitly notes the protein is anchored by a single C-proximal transmembrane segment and places the heme-bearing domain on the IMS side. (gaignard2013mutationsincyc1 pages 1-2)

3.2 Precursor processing and proteolytic maturation

CYC1 is synthesized in the cytosol as a precursor and imported post-translationally into mitochondria. A CYC1-associated disease report states cytochrome c1 matures after two cleavage episodes, consistent with multi-step processing of mitochondrial inner-membrane proteins. (heidari2021defectivecomplexiii pages 1-2)

3.3 IMMP2L-dependent processing (2024 development with functional implications)

A 2024 experimental/computational study (mouse Immp2lKDβˆ’/βˆ’ knockout) provides evidence that IMMP2L, an inner mitochondrial membrane peptidase, is required to cleave and remove the signal/transit peptide from cytochrome c1 (Cyc1). In the knockout, uncleaved Cyc1 is detected and AlphaFold2-Multimer modeling predicts altered Cyc1–Cyb (cytochrome b) contacts, including 56 new contacts between the retained transit peptide and Cyb. The same study reports physiologic/functional correlates including reduced respiration in primary MEFs (~27% lower total respiration; ~12% lower mitochondrial respiration) and a ~31% reduction in succinate-driven kidney respiration, consistent with compromised respiratory-chain performance when Cyc1 processing is perturbed. (clarke2024immp2lenhancesthe pages 7-9, clarke2024immp2lenhancesthe pages 9-11, clarke2024immp2lenhancesthe pages 2-3)

As mechanistic context, a 2024 Cell Reports study in yeast describes a coordinated maturation environment where the IMMP2L homolog (Imp2) is linked to cytochrome c1 (Cyt1) processing after hemylation, supporting the general concept that cytochrome c1 cleavage is a regulated late maturation step rather than a trivial trimming event. (horten2024identificationofmimas pages 5-6)

4) Pathways and systems context (OXPHOS and supercomplexes)

4.1 OXPHOS pathway placement

CYC1 acts specifically within the electron transport chain (ETC) as part of complex III, connecting the membrane quinone pool (CoQ/QH2) to the cytochrome c pool, which then supplies electrons to complex IV. (kohler2023thefunctionalsignificance pages 1-2, ros2025bluntingmycfunction pages 7-11)

4.2 Expert interpretation: supercomplex organization

A 2023 EMBO Reports expert review emphasizes that ETC complexes can assemble into respiratory supercomplexes and discusses ongoing uncertainty about universal functional advantages; nevertheless, complex III’s dimeric architecture and Q-cycle role are central features around which supercomplex discussions are framed. This is relevant to CYC1 because cytochrome c1 provides the IMS-facing exit point for electrons to the mobile carrier cytochrome c, and the spatial organization of complex III relative to complex IV can shape effective electron transfer routes. (kohler2023thefunctionalsignificance pages 1-2)

5) Human disease relevance, real-world implementation, and recent statistics/data

5.1 CYC1 as a disease gene for isolated complex III deficiency

A 2024 Journal of Inherited Metabolic Disease update (ČunÑtovÑ & FernÑndez-Vizarra, published July 2024, URL: https://doi.org/10.1002/jimd.12751) consolidates current knowledge on nuclear genes causing complex III deficiency and lists CYC1 (OMIM 615453) as a core subunit gene with four reported cases/families. In the excerpted summary, the clinical pattern for CYC1 includes neonatal-to-childhood episodic metabolic decompensation, including ketoacidosis, lactic acidosis, and hyperammonemia; reported CYC1 variants include c.288G>T (p.Trp96Cys), c.643C>T (p.Leu215Phe), and c.949C>T (p.Arg317Trp). (cunatova2024pathologicalvariantsin pages 4-5)

5.2 High-confidence primary human genetics evidence (functional rescue)

A landmark study (Gaignard et al., American Journal of Human Genetics; published Aug 2013, URL: https://doi.org/10.1016/j.ajhg.2013.06.015) identifies homozygous p.Trp96Cys and p.Leu215Phe variants in children with recurrent metabolic crises and insulin-responsive hyperglycemia. The study reports markedly reduced cytochrome c1 protein and an isolated complex III enzymatic defect, with CIII-to-citrate-synthase activities measured at 4% (liver), 24% (muscle), and 25% (fibroblasts) of controls, and shows that expression of wild-type CYC1 restores complex III activity in patient cells (functional complementation). These data tightly connect CYC1 genotype to complex III biochemical phenotype, representing a clinically actionable diagnostic archetype (variant β†’ enzyme defect β†’ rescue). (gaignard2013mutationsincyc1 pages 1-2)

5.3 Expanded clinical spectrum: neuro-ophthalmologic presentations

A 2021 case report (Mitochondrion; published Sep 2021, URL: https://doi.org/10.1016/j.mito.2021.07.001) reports a homozygous p.Arg317Trp variant and describes a complex III defect presenting with optic/white-matter features that can mimic inflammatory demyelination or optic neuropathy syndromes. This underscores a real-world diagnostic issue: CYC1-related mitochondrial disease can present outside β€œclassic” metabolic phenotypes. (heidari2021defectivecomplexiii pages 1-2)

6) Summary table (evidence-backed functional annotation)

The following table summarizes CYC1 functional annotation, localization, processing, disease associations, and quantitative data points used in this report.

Category Key points Best supporting citations
Identity/Complex membership Human CYC1 (UniProt P08574) encodes cytochrome c1, a nuclear-encoded core catalytic subunit of mitochondrial respiratory chain complex III (cytochrome bc1 / ubiquinol:cytochrome c oxidoreductase). Complex III is an obligate homodimer in the inner mitochondrial membrane; cytochrome c1 is one of the three evolutionarily conserved catalytic subunits together with cytochrome b and the Rieske Fe-S protein. (cunatova2024pathologicalvariantsin pages 4-5, gaignard2013mutationsincyc1 pages 1-2, ros2025bluntingmycfunction pages 7-11, kohler2023thefunctionalsignificance pages 1-2)
Catalytic role CYC1 itself is not a standalone enzyme; within complex III it carries out the cytochrome c1 electron-transfer step of the Q-cycle. Electrons derived from ubiquinol (QH2) oxidation at the Qo site pass via the Rieske 2Fe-2S protein to heme c1 in cytochrome c1, then to soluble cytochrome c, while the second electron travels through cytochrome b hemes toward the Qi site. This helps couple electron transfer to proton release into the intermembrane space. (bochkova2025theflexiblechain pages 8-9, bochkova2025theflexiblechain pages 9-11, kohler2023thefunctionalsignificance pages 1-2)
Cofactor Cytochrome c1 contains a single c-type heme, heme c1, covalently attached and exposed for rapid electron transfer to cytochrome c. The 2024 complex III deficiency update describes CYC1 as bearing a heme-binding C-terminal domain facing the intermembrane space; earlier primary work identifies the mature protein as the heme-containing subunit of complex III. (cunatova2024pathologicalvariantsin pages 4-5, gaignard2013mutationsincyc1 pages 1-2, osz2025mutationsofthe pages 4-6)
Localization/topology CYC1 is a mitochondrial inner membrane protein. Its heme-containing domain projects into the intermembrane space, where it meets cytochrome c; the protein is anchored by a single C-proximal transmembrane segment. Thus, its functional redox surface is IMS-exposed while its anchor resides in the inner membrane. (gaignard2013mutationsincyc1 pages 1-2, cunatova2024pathologicalvariantsin pages 4-5, ros2025bluntingmycfunctiona pages 7-11)
Processing/maturation Cytochrome c1 is synthesized as a precursor, imported post-translationally into mitochondria, and matures after proteolytic processing. Evidence from CYC1 disease literature states the precursor undergoes two cleavage episodes before the mature heme-bound form is produced. IMMP2L is reported to cleave the CYC1 transit/signal peptide; in Immp2l-deficient mice, uncleaved Cyc1 accumulates and displays altered predicted interactions within complex III. Yeast biogenesis work further supports that cytochrome c1 cleavage occurs after hemylation in a dedicated maturation context. (heidari2021defectivecomplexiii pages 1-2, clarke2024immp2lenhancesthe pages 2-3, horten2024identificationofmimas pages 5-6)
Key interactions Functionally critical partners are UQCRFS1/Rieske Fe-S protein (upstream electron donor), cytochrome c (downstream mobile acceptor), and cytochrome b/CYB within the same complex. Structural/biophysical analysis indicates fast heme-to-heme transfer from heme c1 to cytochrome c via a short-distance docking interface shaped by electrostatic and hydrophobic contacts. IMMP2L-loss modeling predicts altered Cyc1-Cyb contacts when the transit peptide is retained. (bochkova2025theflexiblechain pages 9-11, clarke2024immp2lenhancesthe pages 7-9, clarke2024immp2lenhancesthe pages 11-12)
Disease associations Pathogenic biallelic CYC1 variants cause isolated complex III deficiency. Reported variants include p.Trp96Cys, p.Leu215Phe, and p.Arg317Trp. Phenotypes include recurrent ketoacidosis, lactic acidosis, hyperammonemia, insulin-responsive hyperglycemia, and in later reports mitochondrial leukoencephalopathy/optic neuropathy-like presentations. The 2024 update notes 4 reported cases/families. (cunatova2024pathologicalvariantsin pages 4-5, gaignard2013mutationsincyc1 pages 1-2, heidari2021defectivecomplexiii pages 1-2, cunatova2024pathologicalvariantsin pages 11-12)
Recent developments 2023-2024 Recent expert reviews emphasize complex III and supercomplex organization as central to respiratory efficiency and signaling. The 2024 JIMD update consolidates the current human genetic evidence for CYC1-related complex III deficiency. A 2024 IMMP2L study adds a newer maturation/regulatory angle by linking failed precursor cleavage to altered CYC1-CYB interactions and respiration defects, expanding understanding of how CYC1 processing may affect complex III performance beyond rare coding variants. (cunatova2024pathologicalvariantsin pages 4-5, clarke2024immp2lenhancesthe pages 11-12, clarke2024immp2lenhancesthe pages 2-3, kohler2023thefunctionalsignificance pages 1-2)
Quantitative data points Reported electron-transfer geometry for cytochrome c1 ↔ cytochrome c: ~17.4 Γ… Fe-to-Fe and ~9.4 Γ… edge-to-edge, with predicted transfer rates up to ~8.3 Γ— 10^6 s^-1. In CYC1-deficient patients, complex III activity was reported at 4%, 24%, and 25% of controls in liver, muscle, and fibroblasts, respectively. In IMMP2L-deficient models affecting CYC1 processing, MEFs showed ~27% lower total respiration and ~12% lower mitochondrial respiration; kidney succinate-driven respiration was ~31% lower, and modeling predicted 56 new contacts between uncleaved Cyc1 transit peptide and Cyb. (bochkova2025theflexiblechain pages 9-11, gaignard2013mutationsincyc1 pages 1-2, clarke2024immp2lenhancesthe pages 9-11, clarke2024immp2lenhancesthe pages 7-9)

Table: This table summarizes the core functional annotation for human CYC1 (UniProt P08574), including its role in mitochondrial complex III, topology, maturation, disease relevance, and recent research highlights. It is designed as a compact evidence-backed reference for narrative reporting.

7) Notes on evidence limitations

  • The provided evidence supports CYC1’s complex III role, topology, key disease variants/phenotypes, and an IMMP2L-dependent processing model. However, detailed UniProt-level residue annotations (e.g., exact heme attachment motif positions) and high-resolution human complex III structural descriptions specific to cytochrome c1 were not directly extracted from the current evidence set and would require targeted retrieval of dedicated human complex III structural papers.
  • The IMMP2L processing study provides strong evidence for processing and physiologic impact, but direct measurements of β€œprocessed vs unprocessed CYC1-specific enzymatic activity” were not included in the extracted text; reported functional readouts are primarily respiration/OCR and structural modeling. (clarke2024immp2lenhancesthe pages 2-3)

References

  1. (gaignard2013mutationsincyc1 pages 1-2): Pauline Gaignard, Minal Menezes, Manuel Schiff, Aurélien Bayot, Malgorzata Rak, Hélène Ogier de Baulny, Chen-Hsien Su, Mylene Gilleron, Anne Lombes, Heni Abida, Alexander Tzagoloff, Lisa Riley, Sandra T. Cooper, Kym Mina, Padma Sivadorai, Mark R. Davis, Richard J.N. Allcock, Nina Kresoje, Nigel G. Laing, David R. Thorburn, Abdelhamid Slama, John Christodoulou, and Pierre Rustin. Mutations in cyc1, encoding cytochrome c1 subunit of respiratory chain complex iii, cause insulin-responsive hyperglycemia. American journal of human genetics, 93 2:384-9, Aug 2013. URL: https://doi.org/10.1016/j.ajhg.2013.06.015, doi:10.1016/j.ajhg.2013.06.015. This article has 92 citations and is from a highest quality peer-reviewed journal.

  2. (cunatova2024pathologicalvariantsin pages 4-5): KristΓ½na ČunΓ‘tovΓ‘ and Erika FernΓ‘ndez‐Vizarra. Pathological variants in nuclear genes causing mitochondrial complex iii deficiency: an update. Journal of Inherited Metabolic Disease, 47:1278-1291, Jul 2024. URL: https://doi.org/10.1002/jimd.12751, doi:10.1002/jimd.12751. This article has 13 citations and is from a peer-reviewed journal.

  3. (kohler2023thefunctionalsignificance pages 1-2): Andreas Kohler, Antoni Barrientos, Flavia Fontanesi, and Martin Ott. The functional significance of mitochondrial respiratory chain supercomplexes. EMBO Reports, Oct 2023. URL: https://doi.org/10.15252/embr.202357092, doi:10.15252/embr.202357092. This article has 90 citations and is from a highest quality peer-reviewed journal.

  4. (bochkova2025theflexiblechain pages 8-9): Z. Bochkova, Adil A. Baizhumanov, A. Yusipovich, Kseniia I Morozova, E. Nikelshparg, Anna A Fedotova, Alisa Tiaglik, Yu Xu, Alexey R. Brazhe, Georgy V Maksimov, Dmitry S. Bilan, Yuliya V. Khramova, E. Y. Parshina, and N. Brazhe. The flexible chain: regulation of structure and activity of etc complexes defines rate of atp synthesis and sites of superoxide generation. Biophysical reviews, 17 1:55-88, Jan 2025. URL: https://doi.org/10.1007/s12551-025-01270-5, doi:10.1007/s12551-025-01270-5. This article has 16 citations and is from a peer-reviewed journal.

  5. (osz2025mutationsofthe pages 4-6): Fanni Ősz, Aamir Nazir, Krisztina TakÑcs-Vellai, and Zsolt Farkas. Mutations of the electron transport chain affect lifespan and ros levels in c. elegans. Antioxidants, 14:76, Jan 2025. URL: https://doi.org/10.3390/antiox14010076, doi:10.3390/antiox14010076. This article has 14 citations.

  6. (bochkova2025theflexiblechain pages 9-11): Z. Bochkova, Adil A. Baizhumanov, A. Yusipovich, Kseniia I Morozova, E. Nikelshparg, Anna A Fedotova, Alisa Tiaglik, Yu Xu, Alexey R. Brazhe, Georgy V Maksimov, Dmitry S. Bilan, Yuliya V. Khramova, E. Y. Parshina, and N. Brazhe. The flexible chain: regulation of structure and activity of etc complexes defines rate of atp synthesis and sites of superoxide generation. Biophysical reviews, 17 1:55-88, Jan 2025. URL: https://doi.org/10.1007/s12551-025-01270-5, doi:10.1007/s12551-025-01270-5. This article has 16 citations and is from a peer-reviewed journal.

  7. (heidari2021defectivecomplexiii pages 1-2): Erfan Heidari, Maryam Rasoulinezhad, Neda Pak, Mahmoud Reza Ashrafi, Morteza Heidari, Brenda Banwell, Masoud Garshasbi, and Ali Reza Tavasoli. Defective complex iii mitochondrial respiratory chain due to a novel variant in cyc1 gene masquerades acute demyelinating syndrome or leber hereditary optic neuropathy. Sep 2021. URL: https://doi.org/10.1016/j.mito.2021.07.001, doi:10.1016/j.mito.2021.07.001. This article has 8 citations and is from a peer-reviewed journal.

  8. (clarke2024immp2lenhancesthe pages 7-9): Raymond A. Clarke, Hemna Govindaraju, Martina Beretta, Ellen Olzomer, Adam J. Lawther, Adam K. Walker, Zhiming Fang, Valsamma Eapen, Tzipi Cohen Hyams, Murray Killingsworth, Wallace Bridge, Nigel Turner, and Khawar Sohail Siddiqui. Immp2l enhances the structure and function of mitochondrial gpd2 dehydrogenase. International Journal of Molecular Sciences, 25:990, Jan 2024. URL: https://doi.org/10.3390/ijms25020990, doi:10.3390/ijms25020990. This article has 3 citations.

  9. (clarke2024immp2lenhancesthe pages 9-11): Raymond A. Clarke, Hemna Govindaraju, Martina Beretta, Ellen Olzomer, Adam J. Lawther, Adam K. Walker, Zhiming Fang, Valsamma Eapen, Tzipi Cohen Hyams, Murray Killingsworth, Wallace Bridge, Nigel Turner, and Khawar Sohail Siddiqui. Immp2l enhances the structure and function of mitochondrial gpd2 dehydrogenase. International Journal of Molecular Sciences, 25:990, Jan 2024. URL: https://doi.org/10.3390/ijms25020990, doi:10.3390/ijms25020990. This article has 3 citations.

  10. (clarke2024immp2lenhancesthe pages 2-3): Raymond A. Clarke, Hemna Govindaraju, Martina Beretta, Ellen Olzomer, Adam J. Lawther, Adam K. Walker, Zhiming Fang, Valsamma Eapen, Tzipi Cohen Hyams, Murray Killingsworth, Wallace Bridge, Nigel Turner, and Khawar Sohail Siddiqui. Immp2l enhances the structure and function of mitochondrial gpd2 dehydrogenase. International Journal of Molecular Sciences, 25:990, Jan 2024. URL: https://doi.org/10.3390/ijms25020990, doi:10.3390/ijms25020990. This article has 3 citations.

  11. (horten2024identificationofmimas pages 5-6): Patrick Horten, Kuo Song, Joshua Garlich, Robert Hardt, Lilia Colina-Tenorio, Susanne E. Horvath, Uwe Schulte, Bernd Fakler, Martin van der Laan, Thomas Becker, Rosemary A. Stuart, Nikolaus Pfanner, and Heike Rampelt. Identification of mimas, a multifunctional mega-assembly integrating metabolic and respiratory biogenesis factors of mitochondria. Cell Reports, 43:113772, Mar 2024. URL: https://doi.org/10.1016/j.celrep.2024.113772, doi:10.1016/j.celrep.2024.113772. This article has 9 citations and is from a highest quality peer-reviewed journal.

  12. (ros2025bluntingmycfunction pages 7-11): O Ros. Blunting myc function in mitochondrial complex iii deficient mice with a hypomorphic myc allele. Unknown journal, 2025.

  13. (ros2025bluntingmycfunctiona pages 7-11): O Ros. Blunting myc function in mitochondrial complex iii deficient mice with a hypomorphic myc allele. Unknown journal, 2025.

  14. (clarke2024immp2lenhancesthe pages 11-12): Raymond A. Clarke, Hemna Govindaraju, Martina Beretta, Ellen Olzomer, Adam J. Lawther, Adam K. Walker, Zhiming Fang, Valsamma Eapen, Tzipi Cohen Hyams, Murray Killingsworth, Wallace Bridge, Nigel Turner, and Khawar Sohail Siddiqui. Immp2l enhances the structure and function of mitochondrial gpd2 dehydrogenase. International Journal of Molecular Sciences, 25:990, Jan 2024. URL: https://doi.org/10.3390/ijms25020990, doi:10.3390/ijms25020990. This article has 3 citations.

  15. (cunatova2024pathologicalvariantsin pages 11-12): KristΓ½na ČunΓ‘tovΓ‘ and Erika FernΓ‘ndez‐Vizarra. Pathological variants in nuclear genes causing mitochondrial complex iii deficiency: an update. Journal of Inherited Metabolic Disease, 47:1278-1291, Jul 2024. URL: https://doi.org/10.1002/jimd.12751, doi:10.1002/jimd.12751. This article has 13 citations and is from a peer-reviewed journal.

Artifacts

Citations

  1. kohler2023thefunctionalsignificance pages 1-2
  2. bochkova2025theflexiblechain pages 8-9
  3. bochkova2025theflexiblechain pages 9-11
  4. heidari2021defectivecomplexiii pages 1-2
  5. horten2024identificationofmimas pages 5-6
  6. cunatova2024pathologicalvariantsin pages 4-5
  7. osz2025mutationsofthe pages 4-6
  8. ros2025bluntingmycfunction pages 7-11
  9. ros2025bluntingmycfunctiona pages 7-11
  10. cunatova2024pathologicalvariantsin pages 11-12
  11. https://doi.org/10.1002/jimd.12751
  12. https://doi.org/10.1016/j.ajhg.2013.06.015
  13. https://doi.org/10.1016/j.mito.2021.07.001
  14. https://doi.org/10.1016/j.ajhg.2013.06.015,
  15. https://doi.org/10.1002/jimd.12751,
  16. https://doi.org/10.15252/embr.202357092,
  17. https://doi.org/10.1007/s12551-025-01270-5,
  18. https://doi.org/10.3390/antiox14010076,
  19. https://doi.org/10.1016/j.mito.2021.07.001,
  20. https://doi.org/10.3390/ijms25020990,
  21. https://doi.org/10.1016/j.celrep.2024.113772,

OpenAI

(CYC1-deep-research-openai.md)
Overview of CYC1 (Cytochrome c1) in Human Mitochondria OpenAI o3-deep-research-2025-06-26 86 citations 2025-11-04T04:46:14.288090

Overview of CYC1 (Cytochrome c1) in Human Mitochondria

CYC1 is the gene encoding cytochrome c1, a heme-containing protein that is an integral subunit of the mitochondrial cytochrome bc1 complex (Complex III of the respiratory chain) (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). Complex III is a multi-subunit enzyme in the inner mitochondrial membrane that transfers electrons from ubiquinol (coenzyme QHβ‚‚) to cytochrome c, contributing to the proton gradient used for ATP synthesis (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). Cytochrome c1 plays a central role in this electron transfer, serving as the bridge between the Rieske iron–sulfur protein and the mobile cytochrome c carrier (go.drugbank.com). In essence, CYC1’s product is a redox-active component of oxidative phosphorylation, crucial for cellular energy production (pmc.ncbi.nlm.nih.gov). Mutations in CYC1 can destabilize cytochrome c1 and impair Complex III function, underscoring its essential role in mitochondrial respiration (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov).

Protein Structure and Cellular Localization

Human cytochrome c1 is synthesized as a precursor in the cytosol and imported into mitochondria, where it is incorporated into Complex III. The mature protein is anchored in the inner mitochondrial membrane by a single C-terminal transmembrane helix (pmc.ncbi.nlm.nih.gov), with its N-terminal domain protruding into the intermembrane space (pmc.ncbi.nlm.nih.gov) (go.drugbank.com). Cytochrome c1 is a c-type cytochrome, meaning it contains a heme c cofactor covalently attached to the protein via two thioether bonds (formed by a CXXCH motif) (go.drugbank.com) (pmc.ncbi.nlm.nih.gov). The heme attachment and maturation of cytochrome c1 require the mitochondrial enzyme holocytochrome c synthase (HCCS), which catalyzes heme ligation for both cytochrome c and cytochrome c1 (pmc.ncbi.nlm.nih.gov). This covalently bound heme is located in the intermembrane-space domain of cytochrome c1 and is the redox-active center that accepts and donates electrons (pmc.ncbi.nlm.nih.gov).

Structurally, cytochrome c1 is about 30 kDa in size and is one of three catalytic subunits of Complex III. It associates with cytochrome b (a multi-helical protein that binds quinone) and the Rieske iron–sulfur protein (which contains a [2Fe–2S] cluster) to form the functional core of the bc₁ complex (pmc.ncbi.nlm.nih.gov). High-resolution structural studies have shown that Complex III is a dimer (two copies of cytochrome b, c1, and Rieske protein form a functional dimeric complex) (pmc.ncbi.nlm.nih.gov). In this dimer, cytochrome c1 features an extended loop on its surface that contacts the c1 subunit from the opposite monomer (pmc.ncbi.nlm.nih.gov). This unique 25-Γ… loop is conserved in mammalian and fungal cytochrome c1 and likely helps stabilize the dimeric complex (pmc.ncbi.nlm.nih.gov). Thus, cytochrome c1’s structure is specialized for its role: a membrane-anchored globular domain containing the heme cofactor positioned to interact with its redox partners in the intermembrane space.

Function in Electron Transport (Complex III Activity)

Primary function – electron transfer: The cytochrome bc1 complex (Complex III) catalyzes the transfer of electrons from ubiquinol (QHβ‚‚) to cytochrome c, while pumping protons across the inner membrane – a mechanism known as the Q cycle (go.drugbank.com) (pmc.ncbi.nlm.nih.gov). Cytochrome c1 is the subunit that directly interacts with cytochrome c, the small mobile electron carrier in the intermembrane space. In each catalytic cycle, cytochrome c1’s heme c accepts an electron from the Rieske iron–sulfur protein and then reduces a molecule of cytochrome c by transferring that electron to cytochrome c’s heme (go.drugbank.com). Two such one-electron transfer events occur for every ubiquinol molecule oxidized: effectively, two cytochrome c molecules are reduced per ubiquinol, coupled with proton translocation to the intermembrane space (pmc.ncbi.nlm.nih.gov). Cytochrome c1, therefore, acts as a critical electron conduit that facilitates this conversion of a two-electron carrier (ubiquinol) into two one-electron carriers (cytochrome c), which then ferry electrons to Complex IV (cytochrome c oxidase) (pmc.ncbi.nlm.nih.gov).

Q-cycle and proton pumping: In the Q cycle mechanism, Complex III oxidizes one ubiquinol molecule in two steps, releasing its two electrons along two separate pathways (pmc.ncbi.nlm.nih.gov). One electron travels via the Rieske [2Fe–2S] cluster to cytochrome c1 and then to cytochrome c, while the other electron cycles through cytochrome b and a second quinone binding site, resulting in the reduction of another quinone molecule (pmc.ncbi.nlm.nih.gov). As a result, 4 protons are released to the intermembrane space (and 2 protons taken up from the matrix) for each pair of electrons transferred, contributing to the proton gradient (go.drugbank.com) (pmc.ncbi.nlm.nih.gov). Although cytochrome c1 itself does not directly bind quinone or pump protons, it is an indispensable part of this proton-coupled electron transfer. It accepts electrons from the Rieske protein’s cluster (once the Rieske domain moves into proximity) and ensures efficient hand-off to cytochrome c (go.drugbank.com). This coordinated electron transfer is tightly linked to proton movement via conformational changes in the complex, and cytochrome c1’s role is purely electron transfer between protein carriers. In summary, the reaction catalyzed by Complex III, to which cytochrome c1 contributes, can be written in a simplified form as:

QHβ‚‚ + 2 cytochrome c (oxidized) β†’ Q + 2 cytochrome c (reduced) + 4 H⁺ (released to intermembrane space) (pmc.ncbi.nlm.nih.gov).

Notably, cytochrome c1’s heme must cycle between Fe²⁺ and Fe³⁺ states as it carries electrons. The substrate specificity of cytochrome c1 is effectively the protein cytochrome c – it binds cytochrome c transiently to reduce it. Structural studies and kinetic experiments have shown that cytochrome c1 and cytochrome c interact via complementary charged surfaces to enable rapid electron transfer (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). This interaction is highly conserved; for example, bacterial bc₁ complexes use cytochrome c2 in place of mitochondrial cytochrome c, but the role of the c1 subunit as the electron donor to cytochrome c2 is analogous (pmc.ncbi.nlm.nih.gov). The importance of this function is highlighted by mutational analyses: alterations in cytochrome c1 that disrupt binding to cytochrome c or the Rieske protein can abolish electron flow through Complex III (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov).

Biological Pathways and Processes

Oxidative phosphorylation: Cytochrome c1 operates in the mitochondrial electron transport chain, a central component of oxidative phosphorylation (OXPHOS). Electrons from metabolic fuels (via NADH or FADHβ‚‚) reach ubiquinol (coenzyme Q), which then delivers electrons to Complex III. As part of Complex III, cytochrome c1 helps transfer these electrons from ubiquinol to cytochrome c (pmc.ncbi.nlm.nih.gov). Cytochrome c subsequently carries electrons to Complex IV, where oxygen is reduced to water (pmc.ncbi.nlm.nih.gov). The overall process establishes an electrochemical proton gradient used by ATP synthase (Complex V) to generate ATP (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). Thus, CYC1’s gene product is directly involved in cellular energy production, linking upstream dehydrogenases (Complex I/II) to downstream oxygen reduction (Complex IV). Loss of cytochrome c1 function blocks electron flow at Complex III, collapsing the proton gradient and severely impairing ATP synthesis. Cells compensate by increasing glycolytic ATP production, which is less efficient and can lead to metabolic imbalances. Indeed, patient cells with CYC1 mutations show deficient Complex III activity and must rely on fermentation for energy, explaining clinical manifestations (e.g. exercise intolerance and lactic acidosis) observed in mitochondrial disorders (www.genecards.org).

Respiratory supercomplexes: In mitochondria, Complex III often forms higher-order assemblies with other complexes (e.g. I–III–IV supercomplexes, also called respirasomes) (pmc.ncbi.nlm.nih.gov). Cytochrome c1 is present in these supercomplexes as part of Complex III2, and its interactions are thought to be compatible with supercomplex formation. A recent expert review (KΓΆhler et al., 2023) noted that supercomplex organization may enhance electron transfer efficiency under certain conditions, though the degree of advantage is still debated (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). In respirasomes, cytochrome c1 would operate similarly, except cytochrome c may transfer electrons preferentially within the supercomplex, potentially minimizing diffusion distance. Some studies propose that the structural role of supercomplexes (stabilizing complexes and minimizing reactive oxygen species) might be more important than a direct catalytic enhancement (pmc.ncbi.nlm.nih.gov). Regardless, the presence of cytochrome c1 in all known supercomplex structures highlights that its function is requisite in any assembled state of the respiratory chain. The conservation of cytochrome c1 from bacteria to humans – including key residues for heme binding and protein–protein interactions – reflects its fundamental role in bioenergetics (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov).

Reactive oxygen species (ROS) generation: While the primary role of cytochrome c1 is benign electron transport, the Complex III Q-cycle can inadvertently produce ROS. During the Q-cycle, a semiquinone intermediate at the Qi site of cytochrome b can react with oxygen to form superoxide. As part of Complex III, cytochrome c1 does not directly generate ROS, but dysfunction or blockage of electron flow at cytochrome c1 can enhance electron leakage to oxygen. Consequently, Complex III (including cytochrome c1) is recognized as one of the main sites of mitochondrial ROS production when electron transfer is impaired or imbalanced (pmc.ncbi.nlm.nih.gov). This links CYC1 indirectly to oxidative stress: for example, cells overexpressing CYC1 or with hyperactive Complex III might produce more ROS if not properly regulated (pmc.ncbi.nlm.nih.gov). In pathology, excessive ROS from mitochondria can trigger damage and even signal apoptosis, though cytochrome c1 itself is not a signaling molecule. (Notably, it is cytochrome c – the downstream partner of c1 – that is released into the cytosol to activate caspases during apoptosis once the mitochondrial membrane is permeabilized.)

Experimental Evidence and Evolutionary Insights

Multiple lines of experimental evidence confirm the function of CYC1 and its gene product’s role in respiration. Biochemical assays have shown that complex III activity is abolished if cytochrome c1 is absent or nonfunctional (pmc.ncbi.nlm.nih.gov). In a 2013 study, Gaignard et al. demonstrated that patient fibroblasts harboring loss-of-function CYC1 mutations had drastically reduced Complex III enzymatic activity and presented with a respiratory chain deficiency. Importantly, transferring a wild-type CYC1 gene into these mutant cells restored complex III activity, proving that the cytochrome c1 defect was causative (pmc.ncbi.nlm.nih.gov). Similarly, studies in model organisms (yeast CYC1 mutants) show that cytochrome c1 is required for growth on respiratory substrates, and yeast CYC1 deletions can be rescued by the human gene (pmc.ncbi.nlm.nih.gov). These rescue experiments provide precise evidence that CYC1’s role is both necessary and specific: it cannot be compensated by other proteins in the electron transport chain.

Structurally, cytochrome c1 has been examined through X-ray crystallography and cryo-EM as part of the bc₁ complex. The X-ray structure of mitochondrial complex III (e.g. from chicken heart mitochondria, ~2.9 Γ… resolution) and recent cryo-EM structures of mammalian supercomplexes have visualized cytochrome c1 in situ, confirming its single transmembrane anchor and exposed heme domain (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). These structures also illustrate the proximity of cytochrome c1’s heme to the docking site of cytochrome c, and the mobile interface with the Rieske protein that swings between cytochrome b and cytochrome c1 during catalysis (pmc.ncbi.nlm.nih.gov) (go.drugbank.com). Evolutionary analyses indicate that cytochrome c1 is ancient and conserved across diverse species of bacteria and eukaryotes. Interestingly, research comparing cytochrome c1 to bacterial cytochromes suggests that mitochondrial c1 evolved from a di-heme cytochrome ancestor by loss of one heme-binding site (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). The modern cytochrome c1 is a β€œcollapsed” version of a two-heme cytochrome, retaining only one heme c and a unique structure that likely optimized it for the dimeric bc₁ complex in mitochondria (pmc.ncbi.nlm.nih.gov). This evolutionary insight highlights how critical the single-heme cytochrome c1 became for efficient electron transport – by streamlining a larger di-heme system into a more compact, specialized electron carrier (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov).

Clinical and Real-World Significance

Given its essential role in energy metabolism, CYC1 and the cytochrome c1 protein have direct clinical relevance. Inherited mutations in CYC1 result in mitochondrial Complex III deficiency, a rare disorder of the respiratory chain (www.genecards.org). One form, identified as Complex III deficiency, nuclear type 6 (MC3DN6), was reported by Gaignard et al. (2013) in patients with insulin-responsive hyperglycemia and muscle weakness (go.drugbank.com). In these patients, muscle and fibroblast analyses showed isolated Complex III dysfunction (with other complexes intact), linking the disease to CYC1 mutations (www.genecards.org). The unusual hyperglycemia phenotype is thought to arise from an energy deficit in muscle and other tissues: cells cannot utilize glucose efficiently via OXPHOS, leading to secondary metabolic effects (www.genecards.org). This underscores the precise role of cytochrome c1 in normal physiology – when it fails, the result is a systemic energy crisis that can manifest with organ-specific symptoms. Although such genetic disorders are rare, they illustrate that cytochrome c1 is indispensable for human health. There is no redundant backup for its function in the electron transport chain, making it a single point of potential failure in metabolism.

Beyond genetic diseases, cytochrome c1 (and Complex III) is of interest in pharmacology and biotech. Complex III is a known drug target in pathogens: for example, the antimalarial drug atovaquone targets the cytochrome bc1 complex of Plasmodium falciparum, inhibiting electron transport at the ubiquinol binding site (pmc.ncbi.nlm.nih.gov). Although atovaquone binds the cytochrome b subunit, the downstream effect is to block cytochrome c1 from receiving electrons, thus collapsing the parasite’s mitochondrial membrane potential. Complex III inhibitors (like atovaquone or the fungicide strobilurin compounds) demonstrate the critical nature of the bc₁ complex: blocking cytochrome c1’s function kills the cell by energy starvation (pmc.ncbi.nlm.nih.gov). This principle is also exploited experimentally by using antimycin A, a classic inhibitor that locks cytochrome b/c1 in a reduced state, to study respiratory control. In cancer research, shifts in mitochondrial function have been observed involving CYC1: tumors with high oxidative metabolism sometimes upregulate electron transport components. A recent study (Han et al., 2016) found CYC1 overexpression in breast cancer correlating with poor prognosis, suggesting that cancer cells modulate mitochondrial Complex III to meet energy demands (pmc.ncbi.nlm.nih.gov). However, targeting cytochrome c1 in human therapy is challenging because of its essential nature in normal cells; thus, current drug strategies aim at pathogen-specific differences in Complex III (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov).

In summary, the human CYC1 gene encodes a pivotal mitochondrial protein, cytochrome c1, that is central to the life-sustaining process of aerobic energy production. Its primary function is to mediate electron transfer within Complex III, handing off electrons from the bc₁ complex to cytochrome c, which is a linchpin step in ATP generation (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). Cytochrome c1 is localized to the mitochondrial inner membrane and structurally tailored for its role, containing a covalently bound heme c and a transmembrane anchor that positions it for efficient electron tunneling (pmc.ncbi.nlm.nih.gov) (go.drugbank.com). It operates within the biochemical pathway of oxidative phosphorylation, and its activity is coupled to proton pumping that drives ATP synthase (go.drugbank.com) (pmc.ncbi.nlm.nih.gov). Decades of research, from early biochemical characterizations (go.drugbank.com) to modern structural and genetic studies, all converge on the understanding that without cytochrome c1, Complex III cannot function – a failure that cells and organisms cannot tolerate. Thus, CYC1 is both conserved and essential, a testament to its singular role in biology. Future research continues to explore how this protein and its complex are assembled, regulated, and can be targeted or protected in disease, but its core function in electron transport and energy conversion remains firmly established in the canon of biochemistry (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov).

References: The information above is supported by recent reviews and primary research on mitochondrial Complex III and cytochrome c1. Key sources include Kohler et al. (2023) (pmc.ncbi.nlm.nih.gov), which reviews the respiratory supercomplexes and energy conversion; Gaignard et al. (2013) (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov), a study identifying CYC1 mutations in human disease; structural biology insights from BBA and eLife studies (e.g. Lange & Hunte 2002) (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov); and database annotations (UniProt/DrugBank updated 2023) consolidating known functions (go.drugbank.com) (go.drugbank.com). These and other cited works provide a current and detailed understanding of CYC1’s function, localization, and significance in human biology. Each citation is indicated in the text (for example, ** (pmc.ncbi.nlm.nih.gov) corresponds to lines 95–102 of the 2023 EMBO Reports article by KΓΆhler et al.), with publication year or PMID when available for clarity.

Citations

  1. AnnotationURLCitation(end_index=370, start_index=261, title='Mutations in CYC1, Encoding Cytochrome c1 Subunit of Respiratory Chain Complex III, Cause Insulin-Responsive Hyperglycemia - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3738829/#:~:text=Complex%20III%20,proximal')
  2. AnnotationURLCitation(end_index=470, start_index=371, title='Identification of Novel Cytochrome C1 (CYC1) Gene Expression in Oral Squamous Cell Carcinoma- An Evaluative Study - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9976869/#:~:text=Introduction%3A')
  3. AnnotationURLCitation(end_index=829, start_index=681, title='Mutations in CYC1, Encoding Cytochrome c1 Subunit of Respiratory Chain Complex III, Cause Insulin-Responsive Hyperglycemia - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3738829/#:~:text=Complex%20III%20,1%7D%20Cytochrome%20c_%7B1%7D%20%28Cyt%20c_%7B1')
  4. AnnotationURLCitation(end_index=970, start_index=830, title='The functional significance of mitochondrial respiratory chain supercomplexes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC10626428/#:~:text=3%E2%80%90phosphate%20dehydrogenase%29,2%7D%20in%20this')
  5. AnnotationURLCitation(end_index=1289, start_index=1137, title='Cytochrome c1, heme protein, mitochondrial | DrugBank Online', type='url_citation', url='https://go.drugbank.com/polypeptides/P08574#:~:text=across%20the%20membrane%20as%20hydrogens,Rieske%20protein%20to%20cytochrome%20c')
  6. AnnotationURLCitation(end_index=1518, start_index=1419, title='Identification of Novel Cytochrome C1 (CYC1) Gene Expression in Oral Squamous Cell Carcinoma- An Evaluative Study - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9976869/#:~:text=Introduction%3A')
  7. AnnotationURLCitation(end_index=1811, start_index=1662, title='Mutations in CYC1, Encoding Cytochrome c1 Subunit of Respiratory Chain Complex III, Cause Insulin-Responsive Hyperglycemia - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3738829/#:~:text=affected%20individuals,stability%20and%20complex%20III%20activity')
  8. AnnotationURLCitation(end_index=1964, start_index=1812, title='CYC1 Predicts Poor Prognosis in Patients with Breast Cancer - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC4864557/#:~:text=In%20our%20previous%20report%2C%20CYC1,role%20of%20CYC1%20in%20tumor')
  9. AnnotationURLCitation(end_index=2373, start_index=2269, title='Mutations in CYC1, Encoding Cytochrome c1 Subunit of Respiratory Chain Complex III, Cause Insulin-Responsive Hyperglycemia - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3738829/#:~:text=and%20IV%20,proximal')
  10. AnnotationURLCitation(end_index=2550, start_index=2446, title='Mutations in CYC1, Encoding Cytochrome c1 Subunit of Respiratory Chain Complex III, Cause Insulin-Responsive Hyperglycemia - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3738829/#:~:text=and%20IV%20,proximal')
  11. AnnotationURLCitation(end_index=2704, start_index=2551, title='Cytochrome c1, heme protein, mitochondrial | DrugBank Online', type='url_citation', url='https://go.drugbank.com/polypeptides/P08574#:~:text=Transmembrane%20Regions%20282,Mitochondrion%20inner%20membrane%20Gene%20sequence')
  12. AnnotationURLCitation(end_index=3025, start_index=2873, title='Cytochrome c1, heme protein, mitochondrial | DrugBank Online', type='url_citation', url='https://go.drugbank.com/polypeptides/P08574#:~:text=across%20the%20membrane%20as%20hydrogens,Rieske%20protein%20to%20cytochrome%20c')
  13. AnnotationURLCitation(end_index=3147, start_index=3026, title='Mitochondrial cytochrome c1 is a collapsed di-heme cytochrome - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC539742/#:~:text=by%20deletion%20of%20a%20stretch,helix')
  14. AnnotationURLCitation(end_index=3513, start_index=3342, title='Biogenesis of cytochromes c and c1 in the electron transport chain of malaria parasites - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC11991887/#:~:text=eukaryotes%20requires%20the%20mitochondrial%20enzyme,are%20like%20yeast%20and%20encode')
  15. AnnotationURLCitation(end_index=3774, start_index=3670, title='Mutations in CYC1, Encoding Cytochrome c1 Subunit of Respiratory Chain Complex III, Cause Insulin-Responsive Hyperglycemia - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3738829/#:~:text=and%20IV%20,proximal')
  16. AnnotationURLCitation(end_index=4260, start_index=4088, title='Mutations in CYC1, Encoding Cytochrome c1 Subunit of Respiratory Chain Complex III, Cause Insulin-Responsive Hyperglycemia - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3738829/#:~:text=electrons%20from%20ubiquinol%20to%20cytochrome,terminal%20domain%2C%20located%20in%20the')
  17. AnnotationURLCitation(end_index=4563, start_index=4423, title='The functional significance of mitochondrial respiratory chain supercomplexes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC10626428/#:~:text=3%E2%80%90phosphate%20dehydrogenase%29,2%7D%20in%20this')
  18. AnnotationURLCitation(end_index=4871, start_index=4690, title='Mitochondrial cytochrome c1 is a collapsed di-heme cytochrome - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC539742/#:~:text=protein%20form%20compact%20molecules%20each,avian%2C%20mammalian%2C%20and%20fungal%20mitochondrial')
  19. AnnotationURLCitation(end_index=5141, start_index=4993, title='Mitochondrial cytochrome c1 is a collapsed di-heme cytochrome - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC539742/#:~:text=protein%E2%80%9D%29%2C%20and%20the%20mono,The%20loop%20motif%20is')
  20. AnnotationURLCitation(end_index=5818, start_index=5668, title='Cytochrome c1, heme protein, mitochondrial | DrugBank Online', type='url_citation', url='https://go.drugbank.com/polypeptides/P08574#:~:text=ATP%20synthase.%20The%20cytochrome%20b,Rieske%20protein%20to%20cytochrome%20c')
  21. AnnotationURLCitation(end_index=5983, start_index=5819, title='The functional significance of mitochondrial respiratory chain supercomplexes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC10626428/#:~:text=obligate%20homodimer%20%28CIII_,carrier%2C%20with%20a%20central%2C%20covalently')
  22. AnnotationURLCitation(end_index=6482, start_index=6330, title='Cytochrome c1, heme protein, mitochondrial | DrugBank Online', type='url_citation', url='https://go.drugbank.com/polypeptides/P08574#:~:text=across%20the%20membrane%20as%20hydrogens,Rieske%20protein%20to%20cytochrome%20c')
  23. AnnotationURLCitation(end_index=6863, start_index=6699, title='The functional significance of mitochondrial respiratory chain supercomplexes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC10626428/#:~:text=obligate%20homodimer%20%28CIII_,carrier%2C%20with%20a%20central%2C%20covalently')
  24. AnnotationURLCitation(end_index=7280, start_index=7111, title='The functional significance of mitochondrial respiratory chain supercomplexes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC10626428/#:~:text=molecules%20are%20oxidized%20to%20Q%2C,electron%20transport%20chain%2C%20another%204')
  25. AnnotationURLCitation(end_index=7620, start_index=7456, title='The functional significance of mitochondrial respiratory chain supercomplexes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC10626428/#:~:text=obligate%20homodimer%20%28CIII_,carrier%2C%20with%20a%20central%2C%20covalently')
  26. AnnotationURLCitation(end_index=8025, start_index=7861, title='The functional significance of mitochondrial respiratory chain supercomplexes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC10626428/#:~:text=obligate%20homodimer%20%28CIII_,carrier%2C%20with%20a%20central%2C%20covalently')
  27. AnnotationURLCitation(end_index=8361, start_index=8211, title='Cytochrome c1, heme protein, mitochondrial | DrugBank Online', type='url_citation', url='https://go.drugbank.com/polypeptides/P08574#:~:text=ATP%20synthase.%20The%20cytochrome%20b,Rieske%20protein%20to%20cytochrome%20c')
  28. AnnotationURLCitation(end_index=8495, start_index=8362, title='The functional significance of mitochondrial respiratory chain supercomplexes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC10626428/#:~:text=obligate%20homodimer%20%28CIII_,2%7D%20in%20this')
  29. AnnotationURLCitation(end_index=8949, start_index=8797, title='Cytochrome c1, heme protein, mitochondrial | DrugBank Online', type='url_citation', url='https://go.drugbank.com/polypeptides/P08574#:~:text=across%20the%20membrane%20as%20hydrogens,Rieske%20protein%20to%20cytochrome%20c')
  30. AnnotationURLCitation(end_index=9552, start_index=9388, title='The functional significance of mitochondrial respiratory chain supercomplexes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC10626428/#:~:text=obligate%20homodimer%20%28CIII_,carrier%2C%20with%20a%20central%2C%20covalently')
  31. AnnotationURLCitation(end_index=10174, start_index=9963, title='Tyrosine Triad at the Interface between the Rieske Iron-Sulfur Protein, Cytochrome c1 and Cytochrome c2 in the bc1 Complex of Rhodobacter capsulatus - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3322269/#:~:text=28%3B1817%285%29%3A811%E2%80%93818.%20doi%3A%2010.1016%2Fj.bbabio.2012.01.013%20,1%7D%20Complex%20of%20Rhodobacter%20capsulatus')
  32. AnnotationURLCitation(end_index=10323, start_index=10175, title='Mitochondrial cytochrome c1 is a collapsed di-heme cytochrome - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC539742/#:~:text=protein%E2%80%9D%29%2C%20and%20the%20mono,The%20loop%20motif%20is')
  33. AnnotationURLCitation(end_index=10744, start_index=10574, title='Tyrosine Triad at the Interface between the Rieske Iron-Sulfur Protein, Cytochrome c1 and Cytochrome c2 in the bc1 Complex of Rhodobacter capsulatus - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3322269/#:~:text=Cytochrome%20c1%20and%20Cytochrome%20c2,1%7D%20Complex%20of%20Rhodobacter%20capsulatus')
  34. AnnotationURLCitation(end_index=11121, start_index=10951, title='Tyrosine Triad at the Interface between the Rieske Iron-Sulfur Protein, Cytochrome c1 and Cytochrome c2 in the bc1 Complex of Rhodobacter capsulatus - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3322269/#:~:text=Cytochrome%20c1%20and%20Cytochrome%20c2,1%7D%20Complex%20of%20Rhodobacter%20capsulatus')
  35. AnnotationURLCitation(end_index=11294, start_index=11122, title='Mitochondrial cytochrome c1 is a collapsed di-heme cytochrome - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC539742/#:~:text=of%20the%20hyperthermophilic%20bacterium%20Aquifex,represents%20an%20extension%20of%20the')
  36. AnnotationURLCitation(end_index=11878, start_index=11730, title='Mutations in CYC1, Encoding Cytochrome c1 Subunit of Respiratory Chain Complex III, Cause Insulin-Responsive Hyperglycemia - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3738829/#:~:text=Complex%20III%20,1%7D%20Cytochrome%20c_%7B1%7D%20%28Cyt%20c_%7B1')
  37. AnnotationURLCitation(end_index=12143, start_index=11972, title='The functional significance of mitochondrial respiratory chain supercomplexes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC10626428/#:~:text=molecules%20are%20oxidized%20to%20Q%2C,electrochemical%20gradient%20across%20the%20IMM')
  38. AnnotationURLCitation(end_index=12360, start_index=12261, title='The functional significance of mitochondrial respiratory chain supercomplexes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC10626428/#:~:text=,Fig%C2%A0%207')
  39. AnnotationURLCitation(end_index=12492, start_index=12361, title='The functional significance of mitochondrial respiratory chain supercomplexes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC10626428/#:~:text=,electron%20transport%20chain%2C%20another%204')
  40. AnnotationURLCitation(end_index=13349, start_index=13164, title='CYC1 Gene - GeneCards | CY1 Protein | CY1 Antibody', type='url_citation', url='https://www.genecards.org/cgi-bin/carddisp.pl?gene=CYC1#:~:text=hyperglycemia%2C%20usually%20associated%20with%20infection,Note%3DThe%20disease%20is%20caused%20by')
  41. AnnotationURLCitation(end_index=13679, start_index=13531, title='Mutations in CYC1, Encoding Cytochrome c1 Subunit of Respiratory Chain Complex III, Cause Insulin-Responsive Hyperglycemia - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3738829/#:~:text=Complex%20III%20,1%7D%20Cytochrome%20c_%7B1%7D%20%28Cyt%20c_%7B1')
  42. AnnotationURLCitation(end_index=14221, start_index=14044, title='The functional significance of mitochondrial respiratory chain supercomplexes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC10626428/#:~:text=can%20operate%20independently%2C%20they%20are,strategies%20to%20overcome%20these%20obstacles')
  43. AnnotationURLCitation(end_index=14362, start_index=14222, title='The functional significance of mitochondrial respiratory chain supercomplexes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC10626428/#:~:text=3%E2%80%90phosphate%20dehydrogenase%29,2%7D%20in%20this')
  44. AnnotationURLCitation(end_index=14914, start_index=14737, title='The functional significance of mitochondrial respiratory chain supercomplexes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC10626428/#:~:text=can%20operate%20independently%2C%20they%20are,strategies%20to%20overcome%20these%20obstacles')
  45. AnnotationURLCitation(end_index=15448, start_index=15276, title='Mitochondrial cytochrome c1 is a collapsed di-heme cytochrome - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC539742/#:~:text=Complex%20III%20%28the%20%E2%80%9Ccytochrome%20bc_,contains%20a%20loop%20that%20protrudes')
  46. AnnotationURLCitation(end_index=15603, start_index=15449, title='Mitochondrial cytochrome c1 is a collapsed di-heme cytochrome - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC539742/#:~:text=second%20half%20of%20the%20dimeric,stretch%20in%20all%20these%20enzymes')
  47. AnnotationURLCitation(end_index=16346, start_index=16247, title='Identification of Novel Cytochrome C1 (CYC1) Gene Expression in Oral Squamous Cell Carcinoma- An Evaluative Study - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9976869/#:~:text=Introduction%3A')
  48. AnnotationURLCitation(end_index=16615, start_index=16516, title='Identification of Novel Cytochrome C1 (CYC1) Gene Expression in Oral Squamous Cell Carcinoma- An Evaluative Study - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9976869/#:~:text=Introduction%3A')
  49. AnnotationURLCitation(end_index=17389, start_index=17240, title='Mutations in CYC1, Encoding Cytochrome c1 Subunit of Respiratory Chain Complex III, Cause Insulin-Responsive Hyperglycemia - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3738829/#:~:text=affected%20individuals,stability%20and%20complex%20III%20activity')
  50. AnnotationURLCitation(end_index=17920, start_index=17771, title='Mutations in CYC1, Encoding Cytochrome c1 Subunit of Respiratory Chain Complex III, Cause Insulin-Responsive Hyperglycemia - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3738829/#:~:text=affected%20individuals,stability%20and%20complex%20III%20activity')
  51. AnnotationURLCitation(end_index=18266, start_index=18117, title='Mutations in CYC1, Encoding Cytochrome c1 Subunit of Respiratory Chain Complex III, Cause Insulin-Responsive Hyperglycemia - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3738829/#:~:text=affected%20individuals,stability%20and%20complex%20III%20activity')
  52. AnnotationURLCitation(end_index=19012, start_index=18840, title='Mitochondrial cytochrome c1 is a collapsed di-heme cytochrome - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC539742/#:~:text=Complex%20III%20%28the%20%E2%80%9Ccytochrome%20bc_,contains%20a%20loop%20that%20protrudes')
  53. AnnotationURLCitation(end_index=19194, start_index=19013, title='Mitochondrial cytochrome c1 is a collapsed di-heme cytochrome - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC539742/#:~:text=protein%20form%20compact%20molecules%20each,avian%2C%20mammalian%2C%20and%20fungal%20mitochondrial')
  54. AnnotationURLCitation(end_index=19593, start_index=19421, title='Mitochondrial cytochrome c1 is a collapsed di-heme cytochrome - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC539742/#:~:text=Complex%20III%20%28the%20%E2%80%9Ccytochrome%20bc_,contains%20a%20loop%20that%20protrudes')
  55. AnnotationURLCitation(end_index=19746, start_index=19594, title='Cytochrome c1, heme protein, mitochondrial | DrugBank Online', type='url_citation', url='https://go.drugbank.com/polypeptides/P08574#:~:text=across%20the%20membrane%20as%20hydrogens,Rieske%20protein%20to%20cytochrome%20c')
  56. AnnotationURLCitation(end_index=20234, start_index=20062, title='Mitochondrial cytochrome c1 is a collapsed di-heme cytochrome - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC539742/#:~:text=of%20the%20hyperthermophilic%20bacterium%20Aquifex,represents%20an%20extension%20of%20the')
  57. AnnotationURLCitation(end_index=20407, start_index=20235, title='Mitochondrial cytochrome c1 is a collapsed di-heme cytochrome - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC539742/#:~:text=Complex%20III%20%28the%20%E2%80%9Ccytochrome%20bc_,contains%20a%20loop%20that%20protrudes')
  58. AnnotationURLCitation(end_index=20777, start_index=20605, title='Mitochondrial cytochrome c1 is a collapsed di-heme cytochrome - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC539742/#:~:text=of%20the%20hyperthermophilic%20bacterium%20Aquifex,represents%20an%20extension%20of%20the')
  59. AnnotationURLCitation(end_index=21152, start_index=20991, title='Mitochondrial cytochrome c1 is a collapsed di-heme cytochrome - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC539742/#:~:text=heme%20cytochrome%20c_,gene%20duplication%20and%20subsequent%20diversification')
  60. AnnotationURLCitation(end_index=21325, start_index=21153, title='Mitochondrial cytochrome c1 is a collapsed di-heme cytochrome - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC539742/#:~:text=Complex%20III%20%28the%20%E2%80%9Ccytochrome%20bc_,contains%20a%20loop%20that%20protrudes')
  61. AnnotationURLCitation(end_index=21741, start_index=21608, title='CYC1 Gene - GeneCards | CY1 Protein | CY1 Antibody', type='url_citation', url='https://www.genecards.org/cgi-bin/carddisp.pl?gene=CYC1#:~:text=This%20gene%20encodes%20a%20subunit,See%20more')
  62. AnnotationURLCitation(end_index=22018, start_index=21935, title='Cytochrome c1, heme protein, mitochondrial | DrugBank Online', type='url_citation', url='https://go.drugbank.com/polypeptides/P08574#:~:text=10,Article')
  63. AnnotationURLCitation(end_index=22364, start_index=22179, title='CYC1 Gene - GeneCards | CY1 Protein | CY1 Antibody', type='url_citation', url='https://www.genecards.org/cgi-bin/carddisp.pl?gene=CYC1#:~:text=hyperglycemia%2C%20usually%20associated%20with%20infection,Note%3DThe%20disease%20is%20caused%20by')
  64. AnnotationURLCitation(end_index=22751, start_index=22566, title='CYC1 Gene - GeneCards | CY1 Protein | CY1 Antibody', type='url_citation', url='https://www.genecards.org/cgi-bin/carddisp.pl?gene=CYC1#:~:text=hyperglycemia%2C%20usually%20associated%20with%20infection,Note%3DThe%20disease%20is%20caused%20by')
  65. AnnotationURLCitation(end_index=23694, start_index=23526, title='Biogenesis of cytochromes c and c1 in the electron transport chain of malaria parasites - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC11991887/#:~:text=inhibited%20by%20the%20current%20antimalarial,for%20ETC%20activity%20and%20parasite')
  66. AnnotationURLCitation(end_index=24267, start_index=24099, title='Biogenesis of cytochromes c and c1 in the electron transport chain of malaria parasites - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC11991887/#:~:text=inhibited%20by%20the%20current%20antimalarial,for%20ETC%20activity%20and%20parasite')
  67. AnnotationURLCitation(end_index=25005, start_index=24832, title='CYC1 Predicts Poor Prognosis in Patients with Breast Cancer - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC4864557/#:~:text=In%20our%20previous%20report%2C%20CYC1,found%20silencing%20CYC1%20suppressed%20metastasis')
  68. AnnotationURLCitation(end_index=25356, start_index=25203, title='Biogenesis of cytochromes c and c1 in the electron transport chain of malaria parasites - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC11991887/#:~:text=falciparum%20Mitochondrial%20Complex%20III%2C%20the,Google%20Scholar')
  69. AnnotationURLCitation(end_index=25499, start_index=25357, title='Biogenesis of cytochromes c and c1 in the electron transport chain of malaria parasites - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC11991887/#:~:text=other%20metazoans%20retain%20a%20single,26%7D%20and%20the')
  70. AnnotationURLCitation(end_index=25968, start_index=25859, title='Mutations in CYC1, Encoding Cytochrome c1 Subunit of Respiratory Chain Complex III, Cause Insulin-Responsive Hyperglycemia - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3738829/#:~:text=Complex%20III%20,proximal')
  71. AnnotationURLCitation(end_index=26133, start_index=25969, title='The functional significance of mitochondrial respiratory chain supercomplexes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC10626428/#:~:text=obligate%20homodimer%20%28CIII_,carrier%2C%20with%20a%20central%2C%20covalently')
  72. AnnotationURLCitation(end_index=26457, start_index=26353, title='Mutations in CYC1, Encoding Cytochrome c1 Subunit of Respiratory Chain Complex III, Cause Insulin-Responsive Hyperglycemia - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3738829/#:~:text=and%20IV%20,proximal')
  73. AnnotationURLCitation(end_index=26610, start_index=26458, title='Cytochrome c1, heme protein, mitochondrial | DrugBank Online', type='url_citation', url='https://go.drugbank.com/polypeptides/P08574#:~:text=across%20the%20membrane%20as%20hydrogens,Rieske%20protein%20to%20cytochrome%20c')
  74. AnnotationURLCitation(end_index=26910, start_index=26760, title='Cytochrome c1, heme protein, mitochondrial | DrugBank Online', type='url_citation', url='https://go.drugbank.com/polypeptides/P08574#:~:text=ATP%20synthase.%20The%20cytochrome%20b,Rieske%20protein%20to%20cytochrome%20c')
  75. AnnotationURLCitation(end_index=27042, start_index=26911, title='The functional significance of mitochondrial respiratory chain supercomplexes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC10626428/#:~:text=,electron%20transport%20chain%2C%20another%204')
  76. AnnotationURLCitation(end_index=27214, start_index=27106, title='Cytochrome c1, heme protein, mitochondrial | DrugBank Online', type='url_citation', url='https://go.drugbank.com/polypeptides/P08574#:~:text=1,JL%2C%20Cuomo%20CA%2C%20Dewar%20K')
  77. AnnotationURLCitation(end_index=27927, start_index=27761, title='The functional significance of mitochondrial respiratory chain supercomplexes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC10626428/#:~:text=The%20mitochondrial%20respiratory%20chain%20,However%2C%20the%20jury%20is%20still')
  78. AnnotationURLCitation(end_index=28037, start_index=27928, title='Mutations in CYC1, Encoding Cytochrome c1 Subunit of Respiratory Chain Complex III, Cause Insulin-Responsive Hyperglycemia - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3738829/#:~:text=Complex%20III%20,proximal')
  79. AnnotationURLCitation(end_index=28361, start_index=28221, title='The functional significance of mitochondrial respiratory chain supercomplexes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC10626428/#:~:text=3%E2%80%90phosphate%20dehydrogenase%29,2%7D%20in%20this')
  80. AnnotationURLCitation(end_index=28565, start_index=28456, title='Mutations in CYC1, Encoding Cytochrome c1 Subunit of Respiratory Chain Complex III, Cause Insulin-Responsive Hyperglycemia - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3738829/#:~:text=Complex%20III%20,proximal')
  81. AnnotationURLCitation(end_index=28715, start_index=28566, title='Mutations in CYC1, Encoding Cytochrome c1 Subunit of Respiratory Chain Complex III, Cause Insulin-Responsive Hyperglycemia - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3738829/#:~:text=affected%20individuals,stability%20and%20complex%20III%20activity')
  82. AnnotationURLCitation(end_index=29023, start_index=28851, title='Mitochondrial cytochrome c1 is a collapsed di-heme cytochrome - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC539742/#:~:text=Complex%20III%20%28the%20%E2%80%9Ccytochrome%20bc_,contains%20a%20loop%20that%20protrudes')
  83. AnnotationURLCitation(end_index=29205, start_index=29024, title='Mitochondrial cytochrome c1 is a collapsed di-heme cytochrome - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC539742/#:~:text=protein%20form%20compact%20molecules%20each,avian%2C%20mammalian%2C%20and%20fungal%20mitochondrial')
  84. AnnotationURLCitation(end_index=29444, start_index=29294, title='Cytochrome c1, heme protein, mitochondrial | DrugBank Online', type='url_citation', url='https://go.drugbank.com/polypeptides/P08574#:~:text=ATP%20synthase.%20The%20cytochrome%20b,Rieske%20protein%20to%20cytochrome%20c')
  85. AnnotationURLCitation(end_index=29598, start_index=29445, title='Cytochrome c1, heme protein, mitochondrial | DrugBank Online', type='url_citation', url='https://go.drugbank.com/polypeptides/P08574#:~:text=Transmembrane%20Regions%20282,Mitochondrion%20inner%20membrane%20Gene%20sequence')
  86. AnnotationURLCitation(end_index=29962, start_index=29798, title='The functional significance of mitochondrial respiratory chain supercomplexes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC10626428/#:~:text=obligate%20homodimer%20%28CIII_,carrier%2C%20with%20a%20central%2C%20covalently')

πŸ“„ View Raw YAML

id: P08574
gene_symbol: CYC1
product_type: PROTEIN
taxon:
  id: NCBITaxon:9606
  label: Homo sapiens
description: >-
  CYC1 encodes cytochrome c1, a heme c1-containing catalytic subunit of
  mitochondrial respiratory chain complex III (cytochrome bc1 complex;
  ubiquinol:cytochrome c oxidoreductase; EC 7.1.1.8). It is a nuclear-encoded
  inner mitochondrial membrane protein anchored by a single C-proximal
  transmembrane helix, with the heme-bearing globular domain projecting into
  the intermembrane space. Within the Q-cycle of complex III, cytochrome c1
  accepts an electron from the Rieske 2Fe-2S protein (UQCRFS1) and donates it
  to soluble cytochrome c, enabling subsequent electron flow to complex IV.
  Cytochrome c1 itself is not an independent enzyme: its molecular function is
  subunit-specific electron transfer activity (GO:0009055), and it contributes
  to the complex-level quinol-cytochrome-c reductase activity (GO:0008121).
  Complex III functions as an obligate homodimer in the OXPHOS pathway and is
  embedded in respirasome-type supercomplexes. Biallelic pathogenic CYC1
  variants (e.g. p.Trp96Cys, p.Leu215Phe, p.Arg317Trp) cause isolated
  mitochondrial complex III deficiency (MC3DN6; OMIM 615453) with
  insulin-responsive hyperglycemia, recurrent ketoacidosis/lactic acidosis,
  and (more recently) leukoencephalopathy/optic neuropathy-like presentations.
  Maturation requires mitochondrial import, holocytochrome c synthase
  (HCCS)-dependent heme c attachment, and IMMP2L-mediated cleavage of the
  retained transit peptide.
existing_annotations:
  - term:
      id: GO:0045275
      label: respiratory chain complex III
    evidence_type: IBA
    original_reference_id: GO_REF:0000033
    review:
      summary: >-
        Phylogenetic propagation correctly assigns CYC1 to respiratory chain
        complex III. This is the defining cellular component for cytochrome c1
        and a core annotation supported by multiple independent lines of
        evidence (genetics, structural biology, ComplexPortal).
      action: ACCEPT
      reason: >-
        Cytochrome c1 is one of the three evolutionarily conserved catalytic
        subunits of the bc1 complex, alongside cytochrome b and the Rieske
        Fe-S protein. Both falcon and openai deep research, and the
        ComplexPortal IPI annotation (PMID:28844695), independently support
        this assignment.
      supported_by:
        - reference_id: file:human/CYC1/CYC1-deep-research-falcon.md
          supporting_text: >-
            Human **CYC1** (UniProt **P08574**) encodes **cytochrome c1**, a
            **nuclear-encoded core catalytic subunit of mitochondrial
            respiratory chain complex III (cytochrome bc1 / ubiquinol:cytochrome
            c oxidoreductase)**.
        - reference_id: PMID:39053894
          supporting_text: >-
            MT‐CYB, the Rieske Fe‐S protein (UQCRFS1), and cytochrome c1
            (CYC1) are the catalytic subunits.
  - term:
      id: GO:0006122
      label: mitochondrial electron transport, ubiquinol to cytochrome c
    evidence_type: IBA
    original_reference_id: GO_REF:0000033
    review:
      summary: >-
        Phylogenetic propagation of the canonical Complex III biological
        process. CYC1 directly participates in this process by accepting
        electrons from the Rieske 2Fe-2S center and donating them to soluble
        cytochrome c. Core annotation.
      action: ACCEPT
      reason: >-
        This is the precise BP term for the reaction CYC1 mediates as part of
        the bc1 complex. Falcon explicitly describes the Q-cycle path Rieske
        -> cytochrome c1 -> cytochrome c as the canonical electron transfer
        sequence in which CYC1 is the IMS-facing exit point.
      supported_by:
        - reference_id: file:human/CYC1/CYC1-deep-research-falcon.md
          supporting_text: >-
            One electron transfers from Qo to the **Rieske 2Fe–2S** center,
            then to **cytochrome c1**, then to **cytochrome c**.
  - term:
      id: GO:0005743
      label: mitochondrial inner membrane
    evidence_type: IEA
    original_reference_id: GO_REF:0000120
    review:
      summary: >-
        UniProt combined-IEA annotation correctly places CYC1 at the inner
        mitochondrial membrane. CYC1 is a single-pass IMM protein with a
        C-proximal transmembrane helix; the heme-bearing domain projects into
        the intermembrane space. Core localization.
      action: ACCEPT
      reason: >-
        Confirmed by experimental IDA (PMID:28844695, ComplexPortal),
        Reactome TAS, and structural biology. Falcon notes the explicit
        topology with a single C-proximal transmembrane segment.
      supported_by:
        - reference_id: file:human/CYC1/CYC1-deep-research-falcon.md
          supporting_text: >-
            CYC1 is a **mitochondrial inner membrane** protein. Its
            **heme-containing domain projects into the intermembrane space**,
            where it meets cytochrome c; the protein is **anchored by a single
            C-proximal transmembrane segment**.
  - term:
      id: GO:0008121
      label: quinol-cytochrome-c reductase activity
    evidence_type: IEA
    original_reference_id: GO_REF:0000120
    review:
      summary: >-
        This complex-level molecular function (EC 7.1.1.8) is the activity of
        the bc1 holoenzyme. CYC1 does not catalyze quinol oxidation
        independently (the Qo/Qi sites are in cytochrome b and quinol oxidation
        requires the Rieske protein), but it is an obligate catalytic subunit
        and contributes to this activity. Retain as a core annotation in the
        contributes_to sense.
      action: ACCEPT
      reason: >-
        Falcon notes CYC1's product is "**not an independent metabolic enzyme**
        in isolation; its primary function is as an **electron-transfer
        subunit within complex III**." The complex-level MF is appropriate
        as a contributes_to function, captured under core_functions.
      supported_by:
        - reference_id: file:human/CYC1/CYC1-deep-research-falcon.md
          supporting_text: >-
            CYC1's gene product (cytochrome c1) is **not an independent
            metabolic enzyme** in isolation; its primary function is as an
            **electron-transfer subunit within complex III**.
  - term:
      id: GO:0009055
      label: electron transfer activity
    evidence_type: IEA
    original_reference_id: GO_REF:0000002
    review:
      summary: >-
        Subunit-specific molecular function of cytochrome c1: heme c1 mediates
        rapid electron transfer (predicted up to ~8.3 x 10^6 s^-1) from the
        Rieske 2Fe-2S center to soluble cytochrome c. This is CYC1's
        independently-enabled molecular function and the primary MF term for
        the gene.
      action: ACCEPT
      reason: >-
        InterPro mapping of the Cyt_c1 domain to electron transfer activity
        is biophysically and structurally accurate. Falcon documents the
        edge-to-edge geometry (~9.4 Γ…) and tunneling rates consistent with
        single-electron transfer.
      supported_by:
        - reference_id: file:human/CYC1/CYC1-deep-research-falcon.md
          supporting_text: >-
            cytochrome c–cytochrome c1 encounter geometry as ~**17.4 Γ… Fe-to-Fe**
            (β‰ˆ**9.4 Γ… edge-to-edge**) and reports predicted electron-transfer
            rates up to **~8.3 Γ— 10^6 sβˆ’1**
  - term:
      id: GO:0016020
      label: membrane
    evidence_type: IEA
    original_reference_id: GO_REF:0000117
    review:
      summary: >-
        Generic "membrane" annotation is too unspecific given the well-supported
        mitochondrial inner membrane localization captured by other annotations
        (IDA, IEA, TAS). Overannotation - the more specific GO:0005743 should
        be used instead.
      action: MARK_AS_OVER_ANNOTATED
      reason: >-
        Per project curation guidelines, when a more specific compartment term
        is supported, the generic "membrane" term should not be a primary
        annotation. Falcon and openai both consistently place CYC1 at the
        inner mitochondrial membrane.
  - term:
      id: GO:0020037
      label: heme binding
    evidence_type: IEA
    original_reference_id: GO_REF:0000002
    review:
      summary: >-
        Heme binding is a core molecular function of CYC1. Cytochrome c1
        contains a single covalently attached c-type heme (heme c1) ligated
        via the conserved CXXCH motif by holocytochrome c synthase (HCCS).
      action: ACCEPT
      reason: >-
        Defining feature of the cytochrome c1 fold. Falcon: cytochrome c1
        contains "a **single c-type heme, heme c1**, covalently attached and
        exposed for rapid electron transfer to cytochrome c."
      supported_by:
        - reference_id: file:human/CYC1/CYC1-deep-research-falcon.md
          supporting_text: >-
            Cytochrome c1 contains a **single c-type heme, heme c1**, covalently
            attached and exposed for rapid electron transfer to cytochrome c.
  - term:
      id: GO:0046872
      label: metal ion binding
    evidence_type: IEA
    original_reference_id: GO_REF:0000043
    review:
      summary: >-
        Generic "metal ion binding" annotation is redundant with the more
        informative "heme binding" (GO:0020037), which already captures the
        Fe coordination by the c-type heme. Also derived via GO_REF:0000043
        (UniProt keyword mapping) which has been deprecated for newer
        annotations.
      action: MARK_AS_OVER_ANNOTATED
      reason: >-
        Heme binding subsumes the Fe coordination biology. Per project
        guidelines, avoid generic terms when a precise term exists. No
        evidence CYC1 binds metal ions outside the heme c1 cofactor.
  - term:
      id: GO:1902600
      label: proton transmembrane transport
    evidence_type: IEA
    original_reference_id: GO_REF:0000108
    review:
      summary: >-
        Proton translocation by complex III is performed by the Q-cycle
        chemistry at the Qo and Qi sites of cytochrome b, not by CYC1 itself.
        This term was inferred logically from EC 7.1.1.8 (assigned to CYC1
        via GO:0008121) but does not reflect a CYC1 subunit-specific activity.
        Overannotation at the subunit level.
      action: MARK_AS_OVER_ANNOTATED
      reason: >-
        Falcon and openai both make clear that "**cytochrome c1 itself does
        not directly bind quinone or pump protons**" - CYC1's role is purely
        electron transfer. Inter-ontology logical inference from EC 7.1.1.8
        propagates this whole-complex activity inappropriately to the cyt c1
        subunit.
      supported_by:
        - reference_id: file:human/CYC1/CYC1-deep-research-falcon.md
          supporting_text: >-
            Although cytochrome c1 itself does not directly bind quinone or
            pump protons, it is an indispensable part of this proton-coupled
            electron transfer.
  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:17500595
    review:
      summary: >-
        IntAct interaction with huntingtin (HTT, P42858) from a yeast-two-hybrid
        screen of Huntingtin interactors. Generic "protein binding" is
        uninformative and likely represents either an aggregation-related
        capture (HTT polyQ pulldown) or a high-throughput false positive
        rather than a physiological CYC1 binding partner.
      action: MARK_AS_OVER_ANNOTATED
      reason: >-
        Per project curation guidelines, the generic "protein binding"
        (GO:0005515) term should be avoided in favor of more specific MF
        terms. CYC1's physiologically meaningful partners are its complex III
        co-subunits and cytochrome c, all of which are captured under
        respiratory chain complex III membership.
  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:28514442
    review:
      summary: >-
        IntAct interaction with KRT9 (P14927) from a large-scale human
        interactome map (BioPlex/Huttlin). Likely a high-throughput affinity
        capture artifact (keratin contamination is a well-known proteomic
        nuisance). Generic "protein binding" is uninformative for CYC1.
      action: MARK_AS_OVER_ANNOTATED
      reason: >-
        Generic protein binding term, with the specific interactor being a
        common HT-AP-MS contaminant. CYC1's true binding partners (Rieske
        protein, cytochrome b, cytochrome c) are well captured by the
        respiratory chain complex III membership annotation.
  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:32814053
    review:
      summary: >-
        IntAct interactions from a neurodegenerative-disease interactome
        screen (HTT/P42858, ATXN1/Q16342, ATXN3-3/Q8IWZ3-3). All partners are
        polyQ disease proteins; capture likely reflects co-aggregation or
        screen-specific bait rather than a physiological CYC1 binding
        function. Generic "protein binding" is uninformative.
      action: MARK_AS_OVER_ANNOTATED
      reason: >-
        Same rationale as other IPI protein binding annotations: generic term,
        non-physiological partners. CYC1 has no established direct role in
        polyQ-aggregate biology.
  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:33961781
    review:
      summary: >-
        IntAct interaction with KRT9 (P14927) from BioPlex 3.0 cell-specific
        interactome maps. Same likely keratin contamination as PMID:28514442.
        Generic "protein binding" is uninformative.
      action: MARK_AS_OVER_ANNOTATED
      reason: >-
        Generic protein binding term, partner likely an AP-MS contaminant.
        Per project guidelines, prefer more specific MF terms.
  - term:
      id: GO:0005739
      label: mitochondrion
    evidence_type: IEA
    original_reference_id: GO_REF:0000107
    review:
      summary: >-
        Orthology-transferred annotation from mouse Cyc1. While true at a
        coarse level, the more specific mitochondrial inner membrane
        (GO:0005743) localization is well-supported and is the appropriate
        primary location.
      action: MARK_AS_OVER_ANNOTATED
      reason: >-
        Mitochondrial inner membrane (GO:0005743) is the precise compartment;
        "mitochondrion" is too broad.
  - term:
      id: GO:0033762
      label: response to glucagon
    evidence_type: IEA
    original_reference_id: GO_REF:0000107
    review:
      summary: >-
        Orthology-transferred annotation from rat Cyc1 (UniProtKB:D3ZFQ8) via
        Ensembl Compara. The original rat annotation likely derives from a
        glucagon-treated proteomics or expression study; this does not
        reflect a direct biological role of human CYC1 in glucagon signaling.
        Spurious annotation propagated by orthology.
      action: REMOVE
      reason: >-
        Neither falcon nor openai deep research describes any role for CYC1
        in glucagon response. CYC1 is a constitutive OXPHOS structural/redox
        subunit; "response to glucagon" is at best a transcriptional/abundance
        correlate of OXPHOS in glucagon-stimulated tissues and not a function
        of cytochrome c1. No human experimental support exists.
  - term:
      id: GO:0045275
      label: respiratory chain complex III
    evidence_type: IEA
    original_reference_id: GO_REF:0000107
    review:
      summary: >-
        Orthology-transferred complex membership. Same conclusion as the IBA
        and IPI annotations - CYC1 is a core subunit of respiratory chain
        complex III.
      action: ACCEPT
      reason: >-
        Independent corroboration of the core complex membership annotation.
      supported_by:
        - reference_id: file:human/CYC1/CYC1-deep-research-falcon.md
          supporting_text: >-
            cytochrome c1 is one of the three evolutionarily conserved catalytic
            subunits together with cytochrome b and the Rieske Fe-S protein.
  - term:
      id: GO:0005743
      label: mitochondrial inner membrane
    evidence_type: IDA
    original_reference_id: PMID:28844695
    review:
      summary: >-
        Direct experimental localization of CYC1 at the inner mitochondrial
        membrane via cryo-EM structure determination of the human respiratory
        megacomplex I2III2IV2 (Guo et al. 2017, ComplexPortal annotation).
        Highest-confidence evidence for this localization.
      action: ACCEPT
      reason: >-
        Structural visualization in situ. Core localization annotation.
      supported_by:
        - reference_id: PMID:28844695
          supporting_text: >-
            Architecture of Human Mitochondrial Respiratory Megacomplex
            I(2)III(2)IV(2).
  - term:
      id: GO:0006122
      label: mitochondrial electron transport, ubiquinol to cytochrome c
    evidence_type: NAS
    original_reference_id: PMID:28844695
    review:
      summary: >-
        ComplexPortal NAS annotation. The biological process is the canonical
        Complex III function and CYC1 is a direct participant. Core annotation.
      action: ACCEPT
      reason: >-
        Consistent with IBA and with all primary biochemical and structural
        literature on cytochrome c1.
      supported_by:
        - reference_id: file:human/CYC1/CYC1-deep-research-falcon.md
          supporting_text: >-
            CYC1 acts specifically within the electron transport chain (ETC) as
            part of complex III, connecting the membrane quinone pool (CoQ/QH2)
            to the cytochrome c pool
  - term:
      id: GO:0045275
      label: respiratory chain complex III
    evidence_type: IPI
    original_reference_id: PMID:28844695
    review:
      summary: >-
        ComplexPortal IPI annotation from structural identification of CYC1 as
        a subunit of the megacomplex I2III2IV2. Core complex membership.
      action: ACCEPT
      reason: >-
        Direct structural evidence places CYC1 in the dimeric Complex III
        within the respirasome.
      supported_by:
        - reference_id: PMID:28844695
          supporting_text: >-
            Architecture of Human Mitochondrial Respiratory Megacomplex
            I(2)III(2)IV(2).
  - term:
      id: GO:0045333
      label: cellular respiration
    evidence_type: NAS
    original_reference_id: PMID:28844695
    review:
      summary: >-
        Cellular respiration is a parent process of mitochondrial electron
        transport (GO:0006122) and oxidative phosphorylation. True but too
        general - the specific GO:0006122 already captures CYC1's role.
        Retain as a peripheral/non-core annotation.
      action: KEEP_AS_NON_CORE
      reason: >-
        Technically correct but redundant with the more precise GO:0006122
        and the complex III membership annotations.
  - term:
      id: GO:0005739
      label: mitochondrion
    evidence_type: HTP
    original_reference_id: PMID:34800366
    review:
      summary: >-
        High-throughput mitochondrial proteome profiling. Confirms
        mitochondrial localization but at a level less specific than the
        inner-membrane annotations. Overannotation at the parent compartment.
      action: MARK_AS_OVER_ANNOTATED
      reason: >-
        Mitochondrial inner membrane (GO:0005743) is the appropriate
        compartment annotation; "mitochondrion" is too broad given strong
        evidence for IMM localization.
  - term:
      id: GO:0016020
      label: membrane
    evidence_type: HDA
    original_reference_id: PMID:19946888
    review:
      summary: >-
        High-throughput membrane proteome of NK cells. Generic membrane is
        too unspecific given strong evidence for inner mitochondrial membrane
        localization.
      action: MARK_AS_OVER_ANNOTATED
      reason: >-
        GO:0005743 captures the precise compartment. HTP membrane proteome
        studies cannot distinguish IMM from other membranes.
  - term:
      id: GO:0005634
      label: nucleus
    evidence_type: HDA
    original_reference_id: PMID:21630459
    review:
      summary: >-
        High-throughput sperm-nucleus proteome (Asia et al.). Detection of
        CYC1 in a sperm-nucleus fraction is almost certainly mitochondrial
        contamination (sperm contain a mitochondrial sheath that fractionates
        with nuclear preparations) rather than a genuine nuclear localization.
        No biological role for CYC1 in the nucleus is supported by any
        primary literature or by either deep research report.
      action: REMOVE
      reason: >-
        Cytochrome c1 has no plausible nuclear function. Its mature form is
        targeted to mitochondria via an N-terminal cleaved presequence,
        anchored to the inner mitochondrial membrane, and matures via
        HCCS-dependent heme c attachment in the IMS. Falcon: "CYC1 is a
        **mitochondrial inner membrane** protein." This annotation is an
        HT-proteomics artifact.
      supported_by:
        - reference_id: file:human/CYC1/CYC1-deep-research-falcon.md
          supporting_text: >-
            CYC1 is a **mitochondrial inner membrane** protein. Its
            **heme-containing domain projects into the intermembrane space**
  - term:
      id: GO:0005739
      label: mitochondrion
    evidence_type: HDA
    original_reference_id: PMID:20833797
    review:
      summary: >-
        High-throughput mitochondrial phosphoproteome of human muscle. Confirms
        mitochondrial localization but at parent-compartment level.
      action: MARK_AS_OVER_ANNOTATED
      reason: >-
        GO:0005743 (mitochondrial inner membrane) is the precise compartment.
  - term:
      id: GO:0005743
      label: mitochondrial inner membrane
    evidence_type: TAS
    original_reference_id: Reactome:R-HSA-164651
    review:
      summary: >-
        Reactome TAS for the human "Electron transfer from ubiquinol to
        cytochrome c of complex III" reaction places CYC1 at the inner
        mitochondrial membrane. Core localization.
      action: ACCEPT
      reason: >-
        Reactome's biochemical reaction model is consistent with all
        structural and biochemical evidence for cytochrome c1.
  - term:
      id: GO:0005743
      label: mitochondrial inner membrane
    evidence_type: TAS
    original_reference_id: Reactome:R-HSA-9906017
    review:
      summary: >-
        Reactome TAS for the UQCRFS1 maturation pathway (peptidase cleavage
        of the UQCRFS1 N-terminal fragment) places CYC1 at the IMM as part of
        the maturing Complex III. Consistent core localization.
      action: ACCEPT
      reason: >-
        Reactome pathway places CYC1 within Complex III at the IMM during
        complex assembly/maturation.
  - term:
      id: GO:0005743
      label: mitochondrial inner membrane
    evidence_type: TAS
    original_reference_id: Reactome:R-HSA-9906042
    review:
      summary: >-
        Reactome TAS for the TTC19-mediated clearance of UQCRFS1 fragments
        from Complex III. Places CYC1 at the IMM as part of Complex III.
        Core localization.
      action: ACCEPT
      reason: >-
        Same compartment as confirmed by structural, IDA, and other TAS
        evidence.
  - term:
      id: GO:0005739
      label: mitochondrion
    evidence_type: TAS
    original_reference_id: PMID:2536365
    review:
      summary: >-
        Traceable author statement from the original CYC1 gene cloning paper
        (Suzuki et al. 1989) describing CYC1 as a mitochondrial cytochrome c1
        gene. While correct, "mitochondrion" is less specific than the
        well-supported inner mitochondrial membrane annotation.
      action: MARK_AS_OVER_ANNOTATED
      reason: >-
        GO:0005743 (mitochondrial inner membrane) is the appropriate, more
        specific compartment; "mitochondrion" should not be the primary
        location annotation.
core_functions:
  - molecular_function:
      id: GO:0009055
      label: electron transfer activity
    contributes_to_molecular_function:
      id: GO:0008121
      label: quinol-cytochrome-c reductase activity
    directly_involved_in:
      - id: GO:0006122
        label: mitochondrial electron transport, ubiquinol to cytochrome c
    locations:
      - id: GO:0005743
        label: mitochondrial inner membrane
    substrates:
      - id: CHEBI:18070
        label: cytochrome c
    in_complex:
      id: GO:0045275
      label: respiratory chain complex III
    description: >-
      CYC1 (cytochrome c1) is a nuclear-encoded catalytic subunit of the
      mitochondrial cytochrome bc1 complex (Complex III, EC 7.1.1.8). Its
      subunit-specific molecular function is electron transfer activity
      (GO:0009055): the covalently attached c-type heme (heme c1, ligated via
      the conserved CXXCH motif by HCCS) accepts a single electron from the
      Rieske 2Fe-2S protein (UQCRFS1) and donates it to soluble cytochrome c,
      enabling rapid heme-to-heme tunneling (~17.4 Γ… Fe-to-Fe; predicted
      rates up to ~8.3 x 10^6 s^-1). This subunit-level activity contributes
      to the complex-level quinol-cytochrome-c reductase activity (GO:0008121)
      of the bc1 holoenzyme, which oxidizes ubiquinol and reduces cytochrome
      c while contributing four protons per Q oxidized to the intermembrane
      space via the Q-cycle. The biological process CYC1 directly participates
      in is mitochondrial electron transport, ubiquinol to cytochrome c
      (GO:0006122). CYC1 is located at the mitochondrial inner membrane
      (GO:0005743), anchored by a single C-proximal transmembrane helix with
      its heme-bearing globular domain projecting into the intermembrane
      space. It functions exclusively as part of respiratory chain complex
      III (GO:0045275), which operates as an obligate homodimer and assembles
      into respiratory supercomplexes.
    supported_by:
      - reference_id: file:human/CYC1/CYC1-deep-research-falcon.md
        supporting_text: >-
          CYC1's gene product (cytochrome c1) is **not an independent
          metabolic enzyme** in isolation; its primary function is as an
          **electron-transfer subunit within complex III**.
      - reference_id: file:human/CYC1/CYC1-deep-research-falcon.md
        supporting_text: >-
          accepts electrons from the Rieske 2Fe–2S protein during the Q-cycle,
          and donates electrons to cytochrome c for delivery to complex IV.
      - reference_id: file:human/CYC1/CYC1-deep-research-falcon.md
        supporting_text: >-
          Cytochrome c1 contains a **single c-type heme, heme c1**, covalently
          attached and exposed for rapid electron transfer to cytochrome c.
      - reference_id: PMID:28844695
        supporting_text: >-
          Architecture of Human Mitochondrial Respiratory Megacomplex
          I(2)III(2)IV(2).
      - reference_id: PMID:23910460
        supporting_text: >-
          Mutations in CYC1, Encoding Cytochrome c1 Subunit of Respiratory
          Chain Complex III, Cause Insulin-Responsive Hyperglycemia
      - reference_id: PMID:39053894
        supporting_text: >-
          MT‐CYB, the Rieske Fe‐S protein (UQCRFS1), and cytochrome c1
          (CYC1) are the catalytic subunits.
suggested_questions:
  - question: >-
      Does retention of an uncleaved CYC1 transit peptide (e.g. on loss of
      IMMP2L function) reduce complex III enzymatic activity directly, beyond
      the indirect respiration phenotypes already reported?
    experts:
      - Raymond A. Clarke
  - question: >-
      What is the spectrum of partial complex III loss tolerated by different
      human tissues, and why is liver disproportionately affected (CIII activity
      ~4% of controls) compared with muscle and fibroblasts (~24-25%) in CYC1
      p.Trp96Cys/p.Leu215Phe patients?
    experts:
      - Pierre Rustin
      - Pauline Gaignard
suggested_experiments:
  - hypothesis: >-
      Pathogenic CYC1 missense variants destabilize the heme c1 attachment or
      the cytochrome c docking surface, reducing electron transfer kcat by
      cytochrome c1 specifically.
    description: >-
      Reconstitute purified wild-type and mutant (p.Trp96Cys, p.Leu215Phe,
      p.Arg317Trp) human cytochrome c1 in vitro (heterologous expression with
      HCCS or bacterial alternative) and measure stopped-flow electron
      transfer kinetics from a reduced Rieske head domain to cyt c1, and
      from cyt c1 to soluble cytochrome c, comparing rate constants and Kd
      values. Pair with optical-spectroscopic determination of heme c1
      midpoint potential.
    experiment_type: in vitro enzymology
  - hypothesis: >-
      In human cells, IMMP2L is required to cleave a residual CYC1 transit
      peptide, and uncleaved CYC1 perturbs cyt c1 - cyt b contacts within
      Complex III, reducing CIII activity.
    description: >-
      Engineer an IMMP2L knockout in a human cell line (HEK293T or HeLa) and
      assay (a) the molecular weight of mature CYC1 by SDS-PAGE/immunoblot
      and Edman/proteomic N-terminal sequencing; (b) CIII activity (oxygen
      consumption with rotenone, decylubiquinol-driven cyt c reduction); (c)
      structure of Complex III by cryo-EM; (d) heme c1 spectral content.
    experiment_type: cell biology / structural biology
proposed_new_terms: []
references:
  - id: GO_REF:0000002
    title: Gene Ontology annotation through association of InterPro records with
      GO terms.
    findings:
      - statement: >-
          InterPro2GO mapping of IPR002326 (Cyt_c1) and IPR036909 (Cyt_c-like
          domain superfamily) assigns CYC1 the molecular functions electron
          transfer activity (GO:0009055) and heme binding (GO:0020037),
          consistent with the protein being the heme c1-bearing subunit of
          complex III.
  - id: GO_REF:0000033
    title: Annotation inferences using phylogenetic trees
    findings:
      - statement: >-
          PANTHER phylogenetic propagation across the cytochrome c1 family
          assigns CYC1 to respiratory chain complex III (GO:0045275) and to
          mitochondrial electron transport, ubiquinol to cytochrome c
          (GO:0006122), consistent with the conserved subunit identity from
          fungal to mammalian bc1 complexes.
  - id: GO_REF:0000043
    title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword
      mapping
    findings:
      - statement: >-
          UniProtKB keyword Metal-binding (KW-0479) is mapped to GO:0046872
          (metal ion binding). For CYC1 this is redundant with the more
          specific heme binding (GO:0020037) and represents an over-annotation
          at the generic MF level.
  - id: GO_REF:0000107
    title: Automatic transfer of experimentally verified manual GO annotation
      data to orthologs using Ensembl Compara.
    findings:
      - statement: >-
          Compara orthology transfers mouse-derived annotations to human
          CYC1, including respiratory chain complex III (GO:0045275) and
          mitochondrion (GO:0005739) which are correct, and response to
          glucagon (GO:0033762) from rat which is not supported by any direct
          human evidence and likely reflects a transcriptional/abundance
          correlate in glucagon-stimulated tissues rather than a CYC1 function.
  - id: GO_REF:0000108
    title: Automatic assignment of GO terms using logical inference, based on on
      inter-ontology links.
    findings:
      - statement: >-
          Inter-ontology logical inference propagates proton transmembrane
          transport (GO:1902600) from EC 7.1.1.8 to CYC1. This is a whole-
          complex activity (proton release is at the Qo site of cytochrome b)
          and should not be a subunit-level annotation for cytochrome c1.
  - id: GO_REF:0000117
    title: Electronic Gene Ontology annotations created by ARBA machine learning
      models
    findings:
      - statement: >-
          ARBA rule-based annotation assigns CYC1 the broad cellular component
          term membrane (GO:0016020). More specific evidence (IDA, TAS, IEA)
          supports mitochondrial inner membrane (GO:0005743) as the correct
          compartment.
  - id: GO_REF:0000120
    title: Combined Automated Annotation using Multiple IEA Methods.
    findings:
      - statement: >-
          Combined automated IEA pipelines correctly assign CYC1 the
          mitochondrial inner membrane location (GO:0005743) and quinol-
          cytochrome-c reductase activity (GO:0008121), consistent with
          experimental and structural evidence.
  - id: PMID:17500595
    title: Huntingtin interacting proteins are genetic modifiers of
      neurodegeneration.
    findings:
      - statement: >-
          Yeast-two-hybrid screen identifies CYC1 as a putative HTT
          interactor. This generic protein-binding capture does not represent
          a physiological CYC1 function; the well-established CYC1 partners
          are its complex III co-subunits and cytochrome c.
  - id: PMID:19946888
    title: Defining the membrane proteome of NK cells.
    findings:
      - statement: >-
          HTP membrane proteome of NK cells detects CYC1 in a membrane
          fraction. Consistent with the well-established mitochondrial inner
          membrane localization; the generic "membrane" GO term is
          over-annotated.
  - id: PMID:20833797
    title: Phosphoproteome analysis of functional mitochondria isolated from
      resting human muscle reveals extensive phosphorylation of inner membrane
      protein complexes and enzymes.
    findings:
      - statement: >-
          CYC1 detected in functional mitochondria from human skeletal
          muscle. Confirms mitochondrial localization; the more specific
          mitochondrial inner membrane term is appropriate.
  - id: PMID:21630459
    title: Proteomic characterization of the human sperm nucleus.
    findings:
      - statement: >-
          HTP detection of CYC1 in a sperm nuclear fraction. CYC1 is a
          mitochondrial inner membrane protein and detection in a sperm
          nuclear fraction almost certainly reflects mitochondrial-sheath
          contamination rather than genuine nuclear localization.
  - id: PMID:2536365
    title: Structural organization of the human mitochondrial cytochrome c1
      gene.
    findings:
      - statement: >-
          Original cloning and characterization of the human CYC1 gene,
          encoding the mitochondrial cytochrome c1 protein.
  - id: PMID:28514442
    title: Architecture of the human interactome defines protein communities and
      disease networks.
    findings:
      - statement: >-
          BioPlex affinity purification map reports a CYC1-KRT9 interaction;
          this is a likely HT-AP-MS contaminant and not a physiological
          partner.
  - id: PMID:28844695
    title: Architecture of Human Mitochondrial Respiratory Megacomplex
      I(2)III(2)IV(2).
    findings:
      - statement: >-
          Cryo-EM structure of the human megacomplex I2III2IV2 places CYC1 as
          a catalytic subunit of dimeric Complex III at the mitochondrial
          inner membrane, with heme c1 positioned for electron transfer to
          soluble cytochrome c.
        supporting_text: >-
          Architecture of Human Mitochondrial Respiratory Megacomplex
          I(2)III(2)IV(2).
  - id: PMID:32814053
    title: Interactome Mapping Provides a Network of Neurodegenerative Disease
      Proteins and Uncovers Widespread Protein Aggregation in Affected Brains.
    findings:
      - statement: >-
          IntAct interactome screen captures CYC1 with polyQ disease proteins
          (HTT, ATXN1, ATXN3-3); likely co-aggregation/contamination, not a
          physiological CYC1 binding function.
  - id: PMID:33961781
    title: Dual proteome-scale networks reveal cell-specific remodeling of the
      human interactome.
    findings:
      - statement: >-
          BioPlex 3.0 cell-specific interactome reports a CYC1-KRT9
          interaction; likely an AP-MS contaminant.
  - id: PMID:34800366
    title: Quantitative high-confidence human mitochondrial proteome and its
      dynamics in cellular context.
    findings:
      - statement: >-
          Quantitative human mitochondrial proteome detects CYC1 in the
          mitochondrion. Mitochondrial inner membrane is the more specific
          compartment.
  - id: PMID:23910460
    title: >-
      Mutations in CYC1, encoding cytochrome c1 subunit of respiratory chain
      complex III, cause insulin-responsive hyperglycemia.
    findings:
      - statement: >-
          Homozygous p.Trp96Cys and p.Leu215Phe variants cause isolated
          complex III deficiency with insulin-responsive hyperglycemia and
          recurrent metabolic crises. CIII/citrate-synthase activities are
          ~4% (liver), 24% (muscle), 25% (fibroblasts) of controls.
          Wild-type CYC1 rescues CIII activity in patient cells, providing
          direct functional evidence that CYC1 is required for complex III
          enzymatic activity.
        supporting_text: >-
          CIII-to-citrate-synthase activities measured at 4% (liver), 24%
          (muscle), and 25% (fibroblasts) of controls, and shows that
          expression of wild-type CYC1 restores complex III activity in
          patient cells (functional complementation). [as summarized in
          falcon deep research]
  - id: PMID:39053894
    title: >-
      Pathological variants in nuclear genes causing mitochondrial complex
      III deficiency: an update.
    findings:
      - statement: >-
          2024 review consolidates known nuclear genes for complex III
          deficiency and lists CYC1 (OMIM 615453) as a core subunit gene with
          four reported cases/families and variants p.Trp96Cys, p.Leu215Phe,
          and p.Arg317Trp.
        supporting_text: >-
          CYC1 (OMIM 615453) as a core subunit gene with four reported
          cases/families. [as summarized in falcon deep research]
  - id: PMID:37828827
    title: >-
      The functional significance of mitochondrial respiratory chain
      supercomplexes.
    findings:
      - statement: >-
          Expert 2023 review of respiratory supercomplexes; emphasizes
          complex III's obligate homodimer architecture and the Q-cycle role
          in linking ubiquinol oxidation to cytochrome c reduction.
        supporting_text: >-
          Complex III (CIII) is a central inner-mitochondrial-membrane (IMM)
          enzyme complex of oxidative phosphorylation (OXPHOS). It transfers
          electrons from ubiquinol (QH2) to the mobile electron carrier
          cytochrome c, while contributing to the proton gradient by moving
          protons to the intermembrane space (IMS) via the Q-cycle mechanism;
          CIII operates as an obligate homodimer (CIII2). [as summarized in
          falcon deep research]
  - id: PMID:40060020
    title: >-
      The flexible chain: regulation of structure and activity of ETC
      complexes defines rate of ATP synthesis and sites of superoxide
      generation.
    findings:
      - statement: >-
          Biophysical review describes the cytochrome c1-cytochrome c docking
          geometry (~17.4 Γ… Fe-to-Fe, ~9.4 Γ… edge-to-edge) with predicted
          tunneling rates up to ~8.3 x 10^6 s^-1 - i.e. CYC1's molecular
          function is fast single-electron transfer to soluble cytochrome c.
        supporting_text: >-
          cytochrome c-cytochrome c1 encounter geometry as ~17.4 Γ… Fe-to-Fe
          (~9.4 Γ… edge-to-edge) and reports predicted electron-transfer rates
          up to ~8.3 x 10^6 s^-1. [as summarized in falcon deep research]
  - id: PMID:34252606
    title: >-
      Defective complex III mitochondrial respiratory chain due to a novel
      variant in CYC1 gene masquerades acute demyelinating syndrome or Leber
      hereditary optic neuropathy.
    findings:
      - statement: >-
          Case report of a homozygous p.Arg317Trp CYC1 variant presenting
          with complex III deficiency mimicking acute demyelinating syndrome
          or Leber hereditary optic neuropathy, expanding the clinical
          spectrum of CYC1-related disease.
        supporting_text: >-
          2021 case report reports a homozygous p.Arg317Trp variant and
          describes a complex III defect presenting with optic/white-matter
          features that can mimic inflammatory demyelination or optic
          neuropathy syndromes. [as summarized in falcon deep research]
  - id: PMID:38256063
    title: >-
      IMMP2L enhances the structure and function of mitochondrial GPD2
      dehydrogenase.
    findings:
      - statement: >-
          In Immp2l knockout mice, the inner mitochondrial membrane peptidase
          IMMP2L is required to cleave the transit peptide of cytochrome c1
          (Cyc1); uncleaved Cyc1 accumulates and AlphaFold2-Multimer modeling
          predicts altered Cyc1-Cyb contacts, with respiration reduced ~27%
          in MEFs and ~31% for succinate-driven kidney respiration.
        supporting_text: >-
          IMMP2L, an inner mitochondrial membrane peptidase, is required to
          cleave and remove the signal/transit peptide from cytochrome c1
          (Cyc1). In the knockout, uncleaved Cyc1 is detected and
          AlphaFold2-Multimer modeling predicts altered Cyc1-Cyb contacts.
          [as summarized in falcon deep research]
  - id: PMID:38393949
    title: >-
      Identification of MIMAS, a multifunctional mega-assembly integrating
      metabolic and respiratory biogenesis factors of mitochondria.
    findings:
      - statement: >-
          Yeast study identifying the MIMAS mega-assembly; links Imp2
          (IMMP2L homolog) to cytochrome c1 (Cyt1) processing after
          hemylation, supporting cytochrome c1 cleavage as a regulated late
          maturation step.
  - id: Reactome:R-HSA-164651
    title: Electron transfer from ubiquinol to cytochrome c of complex III
    findings:
      - statement: >-
          Reactome reaction R-HSA-164651 places CYC1 within Complex III at
          the inner mitochondrial membrane and shows the electron transfer
          from ubiquinol to cytochrome c.
  - id: Reactome:R-HSA-9906017
    title: Unknown peptidase cleaves UQCRFS1 subunit
    findings:
      - statement: >-
          Reactome pathway for UQCRFS1 N-terminal fragment cleavage during
          Complex III maturation; CYC1 is part of the IMM-localized complex
          undergoing this maturation step.
  - id: Reactome:R-HSA-9906042
    title: TTC19 clears UQCRFS1 fragments from Complex III
    findings:
      - statement: >-
          Reactome pathway for TTC19-mediated clearance of UQCRFS1 fragments
          from Complex III; CYC1 is part of the IMM-localized complex.
  - id: file:human/CYC1/CYC1-deep-research-openai.md
    title: Deep research report on P08574 (openai o3-deep-research-2025-06-26)
    findings:
      - statement: >-
          Detailed narrative review of CYC1 cytochrome c1 function, structure,
          maturation by HCCS, role in the Q-cycle as the electron donor to
          soluble cytochrome c, supercomplex organization, and clinical
          relevance (MC3DN6, insulin-responsive hyperglycemia).
  - id: file:human/CYC1/CYC1-deep-research-falcon.md
    title: Deep research report on P08574 (falcon Edison Scientific Literature)
    findings:
      - statement: >-
          Comprehensive 2024-2025 update on CYC1 function (electron-transfer
          subunit of complex III), topology (IMM, single C-proximal TM, heme
          domain in IMS), maturation (HCCS heme attachment, IMMP2L cleavage),
          and disease (MC3DN6 with p.Trp96Cys, p.Leu215Phe, p.Arg317Trp).
status: COMPLETE