id: Q8TEB1
gene_symbol: DCAF11
product_type: PROTEIN
status: COMPLETE
taxon:
  id: NCBITaxon:9606
  label: Homo sapiens
description: DCAF11 (DDB1- and CUL4-associated factor 11; also called WD repeat-containing
  protein 23, WDR23) is a WD40-repeat protein that serves as a substrate-recognition
  receptor of the CRL4 (DDB1-CUL4-RBX1) cullin-RING E3 ubiquitin ligase. Through a
  conserved WDXR motif it docks onto the DDB1 adaptor of CUL4A- and CUL4B-based
  complexes and uses its C-terminal WD40 beta-propeller to present specific substrates
  for polyubiquitination and proteasomal degradation. Characterized substrates include
  the NRF2/NFE2L2 transcription factor (via the DIDLID sequence of its Neh2 domain),
  which links DCAF11 to the cellular antioxidant/oxidative-stress response, and the
  centromeric histone variant CENP-A, whose phospho-Ser68-primed degradation DCAF11
  mediates to maintain centromere identity. The protein localizes predominantly to
  the nucleoplasm, consistent with its nuclear substrates. The orthologous receptor
  in C. elegans (WDR-23) controls the NRF/Nrf2 ortholog SKN-1, and DCAF11 has also
  been exploited as a recruited ligase in covalent molecular-glue targeted protein
  degradation.
alternative_products:
- name: '1'
  id: Q8TEB1-1
- name: '2'
  id: Q8TEB1-2
  sequence_note: VSP_008424
- name: '3'
  id: Q8TEB1-3
  sequence_note: VSP_008423
existing_annotations:
- term:
    id: GO:0043161
    label: proteasome-mediated ubiquitin-dependent protein catabolic process
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  qualifier: involved_in
  review:
    summary: DCAF11 is the substrate receptor of the CRL4(DCAF11) E3 ligase and
      targets multiple substrates for proteasomal degradation, including NRF2 and
      CENP-A, and additionally p21Cip1/CDKN1A (CRL4B-DCAF11) and the stem-loop binding
      protein SLBP at the end of S phase. This IBA term correctly captures the core
      role in ubiquitin-dependent proteolysis and is supported by direct experimental
      data on substrate degradation.
    action: ACCEPT
    reason: Core biological process; supported phylogenetically and by direct
      degradation studies of NRF2 and CENP-A, with additional DCAF11-specific
      proteolytic substrates (p21Cip1, SLBP) reported in the primary literature and
      summarized in the falcon deep research.
    supported_by:
    - reference_id: PMID:34758320
      supporting_text: Deletion of DCAF11 hampers CENP-A degradation and causes its
        mislocalization.
    - reference_id: PMID:31586112
      supporting_text: DCAF11 and DDB1-Cul4/Roc1 bind to the DIDLID sequence of the
        Neh2 domain of Nrf2 to mediate its degradation.
    - reference_id: file:human/DCAF11/DCAF11-deep-research-falcon.md
      supporting_text: DCAF11 mediates the degradation of SLBP at the end of S phase
        through a phosphorylation-dependent mechanism
- term:
    id: GO:0080008
    label: Cul4-RING E3 ubiquitin ligase complex
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  qualifier: part_of
  review:
    summary: DCAF11 is an established component of the CRL4 (DDB1-CUL4) E3 ubiquitin
      ligase complex, acting as the DDB1-bound substrate receptor. This is the
      primary, well-supported complex membership annotation.
    action: ACCEPT
    reason: Core complex membership; supported by IBA, by direct IDA in PMID:16949367,
      and by ComplexPortal entries CPX-2403/CPX-2404.
    supported_by:
    - reference_id: PMID:16949367
      supporting_text: we identify 18 Ddb1- and Cul4-associated factors (DCAFs),
        including 14 containing WD40 repeats. DCAFs interact with multiple surfaces
        on Ddb1.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:19109893
  qualifier: enables
  review:
    summary: Generic protein-binding annotation from an interactome dataset with
      DDB1 (Q16531). The specific, informative function (DDB1-docked substrate
      receptor) is captured better by other terms; bare protein binding is
      uninformative.
    action: MARK_AS_OVER_ANNOTATED
    reason: Bare protein binding (GO:0005515) is uninformative; the meaningful
      DDB1 interaction is captured by the substrate-receptor MF and complex terms.
    supported_by:
    - reference_id: PMID:19109893
      supporting_text: Structural basis of UV DNA-damage recognition by the DDB1-DDB2
        complex.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:22190034
  qualifier: enables
  review:
    summary: Interaction with HIV-1 Vif (P12504) from a viral-host interactome
      screen. Represents viral hijacking of CRL machinery, not an endogenous
      DCAF11 function; the bare protein-binding term is uninformative.
    action: MARK_AS_OVER_ANNOTATED
    reason: Xeno viral-host interactome hit; bare protein binding does not inform
      endogenous gene function.
    supported_by:
    - reference_id: PMID:22190034
      supporting_text: Global landscape of HIV-human protein complexes.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:28514442
  qualifier: enables
  review:
    summary: Generic protein-binding annotation with DDB1 (Q16531) from a large-scale
      interactome map. Uninformative as a bare term; the DDB1 interaction is already
      captured by complex/substrate-receptor terms.
    action: MARK_AS_OVER_ANNOTATED
    reason: Bare protein binding from high-throughput interactome; not specifically
      informative.
    supported_by:
    - reference_id: PMID:28514442
      supporting_text: Architecture of the human interactome defines protein
        communities and disease networks.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:32296183
  qualifier: enables
  review:
    summary: Generic protein-binding annotation from a binary (Y2H) interactome map
      with high-throughput partners (AGR2, TNNI1, TNNI2, RCN1, GPSM1) lacking
      functional follow-up. Bare protein binding is uninformative and these are
      likely non-physiological screen hits.
    action: MARK_AS_OVER_ANNOTATED
    reason: High-throughput binary interactome partners without functional validation;
      bare protein binding uninformative.
    supported_by:
    - reference_id: PMID:32296183
      supporting_text: A reference map of the human binary protein interactome.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:33961781
  qualifier: enables
  review:
    summary: Generic protein-binding annotation with DDB1 (Q16531) from a
      proteome-scale interactome dataset. Uninformative bare term; DDB1 interaction
      already represented by complex/substrate-receptor annotations.
    action: MARK_AS_OVER_ANNOTATED
    reason: Bare protein binding from large-scale interactome; not specifically
      informative.
    supported_by:
    - reference_id: PMID:33961781
      supporting_text: Dual proteome-scale networks reveal cell-specific remodeling
        of the human interactome.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:35271311
  qualifier: enables
  review:
    summary: Generic protein-binding annotation with DDB1 (Q16531) from the OpenCell
      endogenous-tagging interactome. Uninformative as bare protein binding; the
      DDB1 interaction is captured by the substrate-receptor and complex terms.
    action: MARK_AS_OVER_ANNOTATED
    reason: Bare protein binding from high-throughput interactome; not specifically
      informative.
    supported_by:
    - reference_id: PMID:35271311
      supporting_text: 'OpenCell: Endogenous tagging for the cartography of human
        cellular organization.'
- term:
    id: GO:0016567
    label: protein ubiquitination
  evidence_type: IEA
  original_reference_id: GO_REF:0000041
  qualifier: involved_in
  review:
    summary: DCAF11 functions in protein ubiquitination as the substrate receptor of
      the CRL4(DCAF11) ligase. This UniPathway-derived IEA term is consistent with
      direct evidence that DCAF11 mediates substrate ubiquitination.
    action: ACCEPT
    reason: Correct process annotation, supported by experimental substrate
      ubiquitination data.
    supported_by:
    - reference_id: PMID:34758320
      supporting_text: DCAF11 (DDB1 and CUL4 associated factor 11/WDR23) is the E3
        ligase that specifically mediates the observed polyubiquitination.
- term:
    id: GO:0031464
    label: Cul4A-RING E3 ubiquitin ligase complex
  evidence_type: NAS
  original_reference_id: PMID:16949367
  qualifier: part_of
  review:
    summary: DCAF11 assembles into the CUL4A variant of the CRL4 complex
      (ComplexPortal CPX-2403). This more specific child of GO:0080008 is supported;
      keep as a valid but non-core specialization, with GO:0080008 as the core term.
    action: KEEP_AS_NON_CORE
    reason: Valid CUL4A-variant complex membership (ComplexPortal CPX-2403); more
      specific than the core GO:0080008 annotation.
    supported_by:
    - reference_id: PMID:16949367
      supporting_text: DCAFs interact with multiple surfaces on Ddb1, and the
        interaction of WD40-containing DCAFs with Ddb1 requires a conserved WDXR
        motif.
- term:
    id: GO:0031465
    label: Cul4B-RING E3 ubiquitin ligase complex
  evidence_type: NAS
  original_reference_id: PMID:16949367
  qualifier: part_of
  review:
    summary: DCAF11 assembles into the CUL4B variant of the CRL4 complex
      (ComplexPortal CPX-2404). This more specific child of GO:0080008 is supported;
      keep as a valid but non-core specialization, with GO:0080008 as the core term.
    action: KEEP_AS_NON_CORE
    reason: Valid CUL4B-variant complex membership (ComplexPortal CPX-2404); more
      specific than the core GO:0080008 annotation.
    supported_by:
    - reference_id: PMID:16949367
      supporting_text: DCAFs interact with multiple surfaces on Ddb1, and the
        interaction of WD40-containing DCAFs with Ddb1 requires a conserved WDXR
        motif.
- term:
    id: GO:0080135
    label: regulation of cellular response to stress
  evidence_type: NAS
  original_reference_id: PMID:31586112
  qualifier: involved_in
  review:
    summary: By targeting NRF2 for degradation, DCAF11 modulates the NRF2-driven
      antioxidant/oxidative-stress response. This regulatory process annotation is
      supported but is a downstream/indirect consequence of the core ligase
      function rather than a core activity.
    action: KEEP_AS_NON_CORE
    reason: Supported via the NRF2/oxidative-stress axis but downstream of the core
      ubiquitin-ligase substrate-receptor function.
    supported_by:
    - reference_id: PMID:31586112
      supporting_text: DCAF11 and DDB1-Cul4/Roc1 bind to the DIDLID sequence of the
        Neh2 domain of Nrf2 to mediate its degradation.
- term:
    id: GO:1902412
    label: regulation of mitotic cytokinesis
  evidence_type: NAS
  original_reference_id: PMID:34758320
  qualifier: involved_in
  review:
    summary: The cited paper shows DCAF11 mediates phospho-Ser68 CENP-A degradation
      to maintain centromere identity and prevent ectopic CENP-A localization during
      the cell cycle; it does not demonstrate a role in cytokinesis. This label
      over-reaches the evidence.
    action: MARK_AS_OVER_ANNOTATED
    reason: The publication concerns CENP-A/centromere homeostasis, not mitotic
      cytokinesis; the term is an imprecise over-interpretation.
    supported_by:
    - reference_id: PMID:34758320
      supporting_text: the Ser68 phosphorylation plays an important role in
        regulating cellular CENP-A homeostasis via DCAF11-mediated degradation to
        prevent ectopic localization of CENP-A during the cell cycle.
- term:
    id: GO:0005654
    label: nucleoplasm
  evidence_type: IDA
  original_reference_id: GO_REF:0000052
  qualifier: located_in
  review:
    summary: Immunofluorescence (HPA) localizes DCAF11 to the nucleoplasm, consistent
      with its nuclear substrates (NRF2, CENP-A) and with the nuclear CRL4 cycle.
    action: ACCEPT
    reason: Direct immunofluorescence localization, consistent with nuclear substrate
      biology.
    supported_by:
    - reference_id: file:human/DCAF11/DCAF11-uniprot.txt
      supporting_text: 'GO; GO:0005654; C:nucleoplasm; IDA:HPA.'
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:16949367
  qualifier: enables
  review:
    summary: This IPI captures the functionally meaningful interactions with DDB1
      and the cullins (Q16531/Q13619/Q13620) that constitute CRL4(DCAF11) assembly.
      The specific, informative function is the DDB1-docked substrate-receptor
      activity rather than bare protein binding.
    action: MODIFY
    reason: The interaction with DDB1/CUL4 reflects the substrate-receptor adaptor
      role; replace uninformative protein binding with the specific MF term.
    proposed_replacement_terms:
    - id: GO:1990756
      label: ubiquitin-like ligase-substrate adaptor activity
    supported_by:
    - reference_id: PMID:16949367
      supporting_text: we identify 18 Ddb1- and Cul4-associated factors (DCAFs),
        including 14 containing WD40 repeats. DCAFs interact with multiple surfaces
        on Ddb1.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:27018634
  qualifier: enables
  review:
    summary: Interaction with an E. coli type III secretion system effector (Q8XB62)
      from a pathogen-effector screen. Not an endogenous DCAF11 function; the bare
      protein-binding term is uninformative.
    action: MARK_AS_OVER_ANNOTATED
    reason: Pathogen effector interactome hit; bare protein binding does not inform
      endogenous gene function.
    supported_by:
    - reference_id: PMID:27018634
      supporting_text: Quantitative Mass Spectrometry Identifies Novel Host Binding
        Partners for Pathogenic Escherichia coli Type III Secretion System Effectors.
- term:
    id: GO:0005654
    label: nucleoplasm
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-8952638
  qualifier: located_in
  review:
    summary: Reactome places the CRL4 complex (here DCAF11) in the nucleoplasm during
      the neddylation/deneddylation regulatory cycle. Consistent with the IDA
      nucleoplasm localization.
    action: ACCEPT
    reason: Nucleoplasm localization corroborated by independent IDA evidence.
    supported_by:
    - reference_id: file:human/DCAF11/DCAF11-uniprot.txt
      supporting_text: 'GO; GO:0005654; C:nucleoplasm; IDA:HPA.'
- term:
    id: GO:0005654
    label: nucleoplasm
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-8952639
  qualifier: located_in
  review:
    summary: Reactome places the CRL4 complex (here DCAF11) in the nucleoplasm during
      the neddylation regulatory cycle. Consistent with the IDA nucleoplasm
      localization.
    action: ACCEPT
    reason: Nucleoplasm localization corroborated by independent IDA evidence.
    supported_by:
    - reference_id: file:human/DCAF11/DCAF11-uniprot.txt
      supporting_text: 'GO; GO:0005654; C:nucleoplasm; IDA:HPA.'
- term:
    id: GO:0005654
    label: nucleoplasm
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-8955245
  qualifier: located_in
  review:
    summary: Reactome places the CRL4 complex (here DCAF11) in the nucleoplasm during
      the CAND1 exchange cycle. Consistent with the IDA nucleoplasm localization.
    action: ACCEPT
    reason: Nucleoplasm localization corroborated by independent IDA evidence.
    supported_by:
    - reference_id: file:human/DCAF11/DCAF11-uniprot.txt
      supporting_text: 'GO; GO:0005654; C:nucleoplasm; IDA:HPA.'
- term:
    id: GO:0005654
    label: nucleoplasm
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-8955285
  qualifier: located_in
  review:
    summary: Reactome places the CRL4 complex (here DCAF11) in the nucleoplasm during
      COMMD-mediated CAND1 displacement. Consistent with the IDA nucleoplasm
      localization.
    action: ACCEPT
    reason: Nucleoplasm localization corroborated by independent IDA evidence.
    supported_by:
    - reference_id: file:human/DCAF11/DCAF11-uniprot.txt
      supporting_text: 'GO; GO:0005654; C:nucleoplasm; IDA:HPA.'
- term:
    id: GO:0005654
    label: nucleoplasm
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-8956045
  qualifier: located_in
  review:
    summary: Reactome places the CRL4 complex (here DCAF11) in the nucleoplasm during
      COP9 signalosome-mediated deneddylation. Consistent with the IDA nucleoplasm
      localization.
    action: ACCEPT
    reason: Nucleoplasm localization corroborated by independent IDA evidence.
    supported_by:
    - reference_id: file:human/DCAF11/DCAF11-uniprot.txt
      supporting_text: 'GO; GO:0005654; C:nucleoplasm; IDA:HPA.'
- term:
    id: GO:0080008
    label: Cul4-RING E3 ubiquitin ligase complex
  evidence_type: IDA
  original_reference_id: PMID:16949367
  qualifier: part_of
  review:
    summary: Direct identification of DCAF11 in DDB1-CUL4A complexes by tandem-affinity
      purification and mass spectrometry establishes CRL4 complex membership. This is
      the core, experimentally grounded complex annotation.
    action: ACCEPT
    reason: Core complex membership directly demonstrated by affinity purification/MS.
    supported_by:
    - reference_id: PMID:16949367
      supporting_text: we identify 18 Ddb1- and Cul4-associated factors (DCAFs),
        including 14 containing WD40 repeats.
core_functions:
- description: Substrate-recognition receptor of the CRL4(DCAF11) cullin-RING E3
    ubiquitin ligase; uses its WD40 beta-propeller to bind substrates and a WDXR motif
    to dock on the DDB1 adaptor of CUL4A/CUL4B complexes, presenting substrates for
    polyubiquitination and proteasomal degradation.
  supported_by:
  - reference_id: PMID:16949367
    supporting_text: we identify 18 Ddb1- and Cul4-associated factors (DCAFs),
      including 14 containing WD40 repeats. DCAFs interact with multiple surfaces on
      Ddb1, and the interaction of WD40-containing DCAFs with Ddb1 requires a
      conserved WDXR motif.
  molecular_function:
    id: GO:1990756
    label: ubiquitin-like ligase-substrate adaptor activity
  in_complex:
    id: GO:0080008
    label: Cul4-RING E3 ubiquitin ligase complex
  directly_involved_in:
  - id: GO:0043161
    label: proteasome-mediated ubiquitin-dependent protein catabolic process
- description: Targets the NRF2/NFE2L2 transcription factor for ubiquitin-dependent
    degradation by binding the DIDLID sequence of its Neh2 domain, thereby tuning the
    NRF2-driven antioxidant/oxidative-stress transcriptional program.
  supported_by:
  - reference_id: PMID:31586112
    supporting_text: DCAF11 and DDB1-Cul4/Roc1 bind to the DIDLID sequence of the
      Neh2 domain of Nrf2 to mediate its degradation.
  - reference_id: PMID:31586112
    supporting_text: indicating that DCAF11 is a functional E3-ubiquitin ligase for
      Nrf2.
  - reference_id: file:human/DCAF11/DCAF11-deep-research-falcon.md
    supporting_text: DCAF11 binds to the DIDLID sequence within the Neh2 domain of
      NRF2, a motif that is distinct from the KEAP1-binding DLG and ETGE motifs
- description: Mediates phospho-Ser68-primed ubiquitination and degradation of the
    centromeric histone variant CENP-A to maintain centromere identity and prevent
    ectopic CENP-A localization during the cell cycle.
  supported_by:
  - reference_id: PMID:34758320
    supporting_text: DCAF11 (DDB1 and CUL4 associated factor 11/WDR23) is the E3
      ligase that specifically mediates the observed polyubiquitination.
  - reference_id: PMID:34758320
    supporting_text: Deletion of DCAF11 hampers CENP-A degradation and causes its
      mislocalization.
proposed_new_terms: []
suggested_questions:
- question: What is the full repertoire of endogenous CRL4(DCAF11) substrates, and which degrons/recognition motifs does the DCAF11 WD40 propeller read?
- question: Does DCAF11 preferentially partner with CUL4A versus CUL4B in specific cellular contexts, and is there substrate specialization between the two variants?
- question: How is CRL4(DCAF11) activity itself regulated (neddylation/CAND1 exchange, expression control such as TFEB repression) under oxidative and proteotoxic stress?
suggested_experiments:
- description: Define the CRL4(DCAF11) substrate landscape using global protein-stability profiling (e.g., quantitative diGly ubiquitinome and degradation/half-life proteomics) comparing DCAF11-knockout versus wild-type cells.
- description: Determine a cryo-EM or crystal structure of DCAF11 bound to DDB1 and to a substrate degron peptide (e.g., NRF2 Neh2 DIDLID or phospho-CENP-A) to map the recognition surface.
- description: Test for genetic separation of function between CUL4A- and CUL4B-based CRL4(DCAF11) complexes by selective depletion and substrate-stabilization readouts.
references:
- id: GO_REF:0000033
  title: Annotation inferences using phylogenetic trees
  findings: []
- id: GO_REF:0000041
  title: Gene Ontology annotation based on UniPathway vocabulary mapping
  findings: []
- id: GO_REF:0000052
  title: Gene Ontology annotation based on curation of immunofluorescence data
  findings: []
- id: PMID:16949367
  title: A family of diverse Cul4-Ddb1-interacting proteins includes Cdt2, which is
    required for S phase destruction of the replication factor Cdt1.
  findings:
  - statement: DCAF11 is one of 18 DDB1- and CUL4-associated factors (DCAFs) that
      serve as substrate receptors, docking on DDB1 via a conserved WDXR motif.
    supporting_text: we identify 18 Ddb1- and Cul4-associated factors (DCAFs),
      including 14 containing WD40 repeats. DCAFs interact with multiple surfaces on
      Ddb1, and the interaction of WD40-containing DCAFs with Ddb1 requires a
      conserved WDXR motif.
- id: PMID:16964240
  title: Molecular architecture and assembly of the DDB1-CUL4A ubiquitin ligase machinery.
  findings:
  - statement: WD40-repeat DCAFs dock on the DDB1 double-beta-propeller of the
      DDB1-CUL4A-ROC1 ligase to present substrates for ubiquitination.
    supporting_text: DDB1 uses one beta-propeller domain for cullin scaffold binding
      and a variably attached separate double-beta-propeller fold for substrate
      presentation.
- id: PMID:19109893
  title: Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex.
  findings: []
- id: PMID:22190034
  title: Global landscape of HIV-human protein complexes.
  findings: []
- id: PMID:27018634
  title: Quantitative Mass Spectrometry Identifies Novel Host Binding Partners for
    Pathogenic Escherichia coli Type III Secretion System Effectors.
  findings: []
- id: PMID:28514442
  title: Architecture of the human interactome defines protein communities and disease
    networks.
  findings: []
- id: PMID:31586112
  title: TFEB activates Nrf2 by repressing its E3 ubiquitin ligase DCAF11 and promoting
    phosphorylation of p62.
  findings:
  - statement: DCAF11 is a functional E3 ubiquitin ligase substrate receptor for NRF2,
      binding the DIDLID sequence of the Neh2 domain to mediate its degradation; TFEB
      transcriptionally represses DCAF11 to stabilize NRF2.
    supporting_text: DCAF11 and DDB1-Cul4/Roc1 bind to the DIDLID sequence of the
      Neh2 domain of Nrf2 to mediate its degradation.
- id: PMID:32296183
  title: A reference map of the human binary protein interactome.
  findings: []
- id: PMID:33961781
  title: Dual proteome-scale networks reveal cell-specific remodeling of the human
    interactome.
  findings: []
- id: PMID:34758320
  title: Phosphorylation at Ser68 facilitates DCAF11-mediated ubiquitination and degradation
    of CENP-A during the cell cycle.
  findings:
  - statement: DCAF11 is the E3 ligase that specifically mediates phospho-Ser68-primed
      polyubiquitination and degradation of CENP-A; its deletion impairs CENP-A
      degradation and causes mislocalization.
    supporting_text: DCAF11 (DDB1 and CUL4 associated factor 11/WDR23) is the E3
      ligase that specifically mediates the observed polyubiquitination. Deletion of
      DCAF11 hampers CENP-A degradation and causes its mislocalization.
- id: PMID:35271311
  title: 'OpenCell: Endogenous tagging for the cartography of human cellular organization.'
  findings: []
- id: Reactome:R-HSA-8952638
  title: AcM-UBE2M transfers NEDD8 to CRL4 E3 ubiquitin ligase complex
  findings: []
- id: Reactome:R-HSA-8952639
  title: NEDD8:AcM-UBE2M binds CRL4 E3 ubiquitin ligase complex
  findings: []
- id: Reactome:R-HSA-8955245
  title: CAND1 binds CRL4 E3 ubiquitin ligase in the nucleus
  findings: []
- id: Reactome:R-HSA-8955285
  title: COMMDs displace CAND1 from CRL4 E3 ubiquitin ligase complex
  findings: []
- id: Reactome:R-HSA-8956045
  title: COP9 signalosome deneddylates nuclear CRL4 E3 ubiquitin ligase complex
  findings: []
- id: file:human/DCAF11/DCAF11-deep-research-falcon.md
  title: Falcon deep research report for DCAF11
  findings:
  - statement: DCAF11/WDR23 is a CRL4 substrate receptor with multiple DCAF11-specific
      substrates reported in the primary literature, including NRF2 (DIDLID degron in
      the Neh2 domain), p21Cip1/CDKN1A (CRL4B-DCAF11, S-phase progression), and SLBP
      (phospho-dependent end-of-S-phase degradation); it has additionally been
      developed as a recruited E3 ligase for targeted protein degradation.
    supporting_text: DCAF11 (WDR23) is a multifunctional substrate receptor within the
      CRL4 E3 ubiquitin ligase complex that regulates diverse cellular processes
      including oxidative stress response, cell cycle progression, DNA damage repair,
      metabolic homeostasis, and host-pathogen interactions.
  reference_review:
    relevance: HIGH
    correctness: UNVERIFIED
    review_notes: "LLM-synthesized (Edison/falcon) deep research report. DCAF11-specific
      substrate/receptor claims that trace to primary papers are credible and useful:
      NRF2 via DIDLID (Lo 2017 PMID-pending / Park 2019 = PMID:31586112), p21/CDKN1A
      via CRL4B-DCAF11 (Chen 2017), SLBP end-of-S-phase degradation (Djakbarova 2016),
      and the 2023-2024 TPD/PROTAC work (Xue 2023, Wang 2024, Parker 2024) establishing
      DCAF11 as a recruited degrader for BRD4. These are not yet in GOA so are NOT added
      as new annotations here, but they corroborate the core ubiquitin-ligase
      substrate-receptor function. CAUTION / not relied upon: the report's isoform
      localization assignments (which UniProt isoform is nuclear vs cytoplasmic), the
      IDE link (explicitly indirect via NRF2 transcription, not a DCAF11 substrate),
      the GEN-1 / influenza PB2 K29 claims, and any family-level CRL4/DCAF
      generalization were treated as unverified family-or-inference material and not
      used to drive annotation actions. Mark UNVERIFIED pending primary-source
      confirmation."
