DLG4

UniProt ID: P78352
Organism: Homo sapiens
Review Status: DRAFT
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Gene Description

DLG4 encodes PSD-95, a membrane-associated guanylate kinase family scaffold concentrated in the intracellular postsynaptic density of excitatory synapses. Its PDZ domains recognize receptor and accessory-protein tails, while its SH3–GK region recruits signaling and scaffold partners, including phosphorylation-dependent ligands. Together these contacts organize neurotransmitter receptors and downstream signaling machinery, support receptor targeting and maintain postsynaptic architecture. The GK-like domain functions in recognition rather than guanylate kinase catalysis. PSD-95 also occupies trafficking, presynaptic and non-neuronal junctional pools in particular contexts. Alternative N termini provide distinct targeting mechanisms, including the palmitoylation-associated alpha and L27-containing beta forms.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0002091 negative regulation of receptor internalization
ISS
GO_REF:0000024
KEEP AS NON CORE
Summary: PSD-95 can restrain beta-1-adrenergic receptor internalization.
Reason: The literal rat P31016 donor has experimental grounding in PMID:11526121. Its abstract explicitly contrasts PSD-95-mediated inhibition with MAGI-2-mediated enhancement of receptor internalization. Retain this receptor-specific regulatory context without making inhibition of all receptor internalization the primary DLG4 function; full original construct details were not recovered.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0005515 protein binding
IPI
PMID:10433268
Shank, a novel family of postsynaptic density proteins that ...
MODIFY
Summary: Specify recognition of the potassium-channel partner.
Reason: The source partner is rat Kcna4 P15385, a transmembrane potassium transporter. The PMID:10433268 abstract establishes the PSD-95/GKAP/Shank assembly but does not expose this exact Kcna4 panel. Independent curated PMID:7477295 two-hybrid/far-western records resolve the same human-DLG4/rat-Kcna4 pair and its tail-dependent interface. The refinement denotes transporter binding, not ion transport by DLG4 or the channel activity of a peptide reagent.
GO:0005515 protein binding
IPI
PMID:10433268
Shank, a novel family of postsynaptic density proteins that ...
MODIFY
Summary: Specify the GKAP scaffold interaction.
Reason: The literal P97836-5 partner is rat Dlgap1/GKAP isoform 3 (GKAP A), not an unspecified natural DLG4 isoform. The source abstract describes the PSD-95/GKAP/Shank ternary assembly and rat-brain coprecipitation; independent domain studies establish the GKAP interface. Scaffold-protein binding captures the partner role without claiming that coimmunoprecipitation alone measures a purified binary affinity.
Proposed replacements: scaffold protein binding
GO:0005515 protein binding
IPI
PMID:10725395
The neuregulin receptor ErbB-4 interacts with PDZ-containing...
MODIFY
Summary: Specify binding to the receptor tyrosine kinase ERBB4.
Reason: The original uses a human ERBB4 tail and human-brain two-hybrid library, reciprocal rat-forebrain coimmunoprecipitation, and QT-6 cells expressing human ERBB4 with a C-terminal deletion control. PSD-95 PDZ1/2 recognize the receptor tail. These complementary assays support receptor-tyrosine-kinase binding; the full PSD-95 expression-backbone species is not explicitly resolved, and neither receptor activation nor DLG4 kinase activity is inferred from binding.
Proposed replacements: receptor tyrosine kinase binding
GO:0005515 protein binding
IPI
PMID:10859302
GAKIN, a novel kinesin-like protein associates with the huma...
MODIFY
Summary: Specify the kinesin partner class.
Reason: Although the paper foregrounds hDlg/DLG1 in T lymphocytes, its complete abstract explicitly reports GAKIN binding to the PSD-95 guanylate-kinase-like domain and a negative p55 comparison. GAKIN is KIF13B, a kinesin. The controlled qualitative association supports kinesin binding; neither stoichiometric affinity nor a DLG4 transport assay is claimed, and the exact full-paper constructs remain inaccessible.
Proposed replacements: kinesin binding
GO:0005515 protein binding
IPI
PMID:11937501
Selectivity and promiscuity of the first and second PDZ doma...
MODIFY
Summary: Specify potassium-channel tail recognition.
Reason: The target-resolved curated records describe direct fluorescence-polarization and peptide-ELISA interactions between DLG4 PDZ1 and the cytoplasmic tail of a human voltage-gated potassium channel. These assays identify the interface of an established transporter partner; they do not establish DLG4 ion transport, native channel stoichiometry or all-product equivalence. The normal source is abstract-only, so the exact read scope is the abstract plus literal assay/construct records.
GO:0005515 protein binding
IPI
PMID:11937501
Selectivity and promiscuity of the first and second PDZ doma...
MODIFY
Summary: Specify the established ionotropic glutamate-receptor interface.
Reason: The source-specific curated assays test DLG4 PDZ domains with cytoplasmic NMDA-receptor tail peptides. These are receptor-derived interface measurements within the independently established PSD-95 receptor-adaptor mechanism, not evidence for a free-peptide biological function or a full-length affinity measurement. Preserve the literal receptor/isoform identifier and variant controls; the normal source remains abstract-only.
GO:0005515 protein binding
IPI
PMID:11937501
Selectivity and promiscuity of the first and second PDZ doma...
MODIFY
Summary: Specify potassium-channel tail recognition.
Reason: The target-resolved curated records describe direct fluorescence-polarization and peptide-ELISA interactions between DLG4 PDZ1 and the cytoplasmic tail of a human voltage-gated potassium channel. These assays identify the interface of an established transporter partner; they do not establish DLG4 ion transport, native channel stoichiometry or all-product equivalence. The normal source is abstract-only, so the exact read scope is the abstract plus literal assay/construct records.
GO:0005515 protein binding
IPI
PMID:11937501
Selectivity and promiscuity of the first and second PDZ doma...
MODIFY
Summary: Specify the established ionotropic glutamate-receptor interface.
Reason: The source-specific curated assays test DLG4 PDZ domains with cytoplasmic NMDA-receptor tail peptides. These are receptor-derived interface measurements within the independently established PSD-95 receptor-adaptor mechanism, not evidence for a free-peptide biological function or a full-length affinity measurement. Preserve the literal receptor/isoform identifier and variant controls; the normal source remains abstract-only.
GO:0005515 protein binding
IPI
PMID:11937501
Selectivity and promiscuity of the first and second PDZ doma...
MODIFY
Summary: Specify the established ionotropic glutamate-receptor interface.
Reason: The source-specific curated assays test DLG4 PDZ domains with cytoplasmic NMDA-receptor tail peptides. These are receptor-derived interface measurements within the independently established PSD-95 receptor-adaptor mechanism, not evidence for a free-peptide biological function or a full-length affinity measurement. Preserve the literal receptor/isoform identifier and variant controls; the normal source remains abstract-only.
GO:0005515 protein binding
IPI
PMID:11937501
Selectivity and promiscuity of the first and second PDZ doma...
MODIFY
Summary: Specify the established ionotropic glutamate-receptor interface.
Reason: The source-specific curated assays test DLG4 PDZ domains with cytoplasmic NMDA-receptor tail peptides. These are receptor-derived interface measurements within the independently established PSD-95 receptor-adaptor mechanism, not evidence for a free-peptide biological function or a full-length affinity measurement. Preserve the literal receptor/isoform identifier and variant controls; the normal source remains abstract-only.
GO:0005515 protein binding
IPI
PMID:11937501
Selectivity and promiscuity of the first and second PDZ doma...
KEEP AS NON CORE
Summary: Retain CRIPT-tail recognition as a supporting interaction.
Reason: The literal records measure DLG4 PDZ1/PDZ3 binding to human CRIPT residues 91–101 by fluorescence polarization and peptide ELISA. The positive interface is credible and independently corroborated, but these assays do not establish DLG4 microtubule binding, CRIPT-mediated cytoskeletal remodeling or a separate peptide-binding core. Retain the source assertion with its fragment scope.
GO:0005515 protein binding
IPI
PMID:12097473
Association of the kinesin superfamily motor protein KIF1Bal...
MODIFY
Summary: Specify binding to the KIF1Balpha kinesin partner.
Reason: The literal partner O60333-3 is the official KIF1Balpha product, whose reconstructed C terminus retains AGRETTV. The original uses a rat KIF1Balpha tail, GST and two-hybrid assays, terminal-valine mutation and rat-brain association. The imported human pair mapping and original rat construct are kept distinct. Controlled tail recognition supports kinesin binding, without a measured native stoichiometry or a claim that DLG4 itself transports cargo.
Proposed replacements: kinesin binding
GO:0005515 protein binding
IPI
PMID:12713445
Selective interaction of megalin with postsynaptic density-9...
KEEP AS NON CORE
Summary: Retain the nonneuronal megalin association.
Reason: The source and literal records identify LRP2/megalin cytoplasmic-tail recognition by PSD-95, with two-hybrid and overexpression coimmunoprecipitation evidence plus colocalization. Megalin is principally an endocytic receptor in this context; the assay does not establish a DLG4-specific signaling-receptor mechanism or transport activity. Preserve the positive association and nonneuronal context without forcing an unsupported functional subclass.
GO:0005515 protein binding
IPI
PMID:16767099
Altered neuregulin 1-erbB4 signaling contributes to NMDA rec...
KEEP AS NON CORE
Summary: Retain ERBB4 association with an explicit disputed-source qualification.
Reason: This human postmortem coimmunoprecipitation source has a verified editorial expression of concern (PMID:38114668), citing blot artifacts and possible duplicated bands; it has not been treated as a retraction. Independent PMID:10725395 supports the ERBB4/PSD-95 association. Retain the binding observation conservatively while declining to use the disputed disease-dependent signaling magnitude as a core claim.
GO:0005515 protein binding
IPI
PMID:17360663
HIV-tat induces formation of an LRP-PSD-95- NMDAR-nNOS compl...
KEEP AS NON CORE
Summary: Retain the contextual LRP1 complex association.
Reason: The separately recovered original examines human neuronal/astrocytic cultures in an HIV-Tat-associated LRP1/NMDAR complex context. Coimmunoprecipitation supports membership or association but does not isolate a purified PSD-95–LRP1 binary interface. Retain the positive source-specific association without converting the complex into a new ligand, enzymatic or disease-specific DLG4 function.
GO:0005515 protein binding
IPI
PMID:17360663
HIV-tat induces formation of an LRP-PSD-95- NMDAR-nNOS compl...
MODIFY
Summary: Specify NMDA-receptor association within the tested complex.
Reason: The source examines the LRP1/PSD-95/NMDAR complex in human neuronal and astrocytic cultures under the reported HIV-Tat context. Its coimmunoprecipitation is complex-level evidence; direct NMDA-receptor tail recognition is independently supported. The receptor-binding refinement uses the combined evidence and does not misdescribe this particular coimmunoprecipitation as a purified binary assay.
GO:0005515 protein binding
IPI
PMID:19118189
Preso, a novel PSD-95-interacting FERM and PDZ domain protei...
MODIFY
Summary: Specify recognition of the cytoskeletal regulator Preso.
Reason: The original identifies FRMPD4/Preso as a PSD-95-associated regulator of dendritic-spine actin organization and excitatory transmission, with interaction and domain-control experiments. GO:0005519 denotes binding a protein that modulates cytoskeletal reorganization, which fits Preso. It does not assert that PSD-95 itself catalyzes actin remodeling or that the independently documented SAP102 interaction is the only MAGUK tested.
GO:0005515 protein binding
IPI
PMID:19243221
Neto1 is a novel CUB-domain NMDA receptor-interacting protei...
KEEP AS NON CORE
Summary: Retain the NETO1 association in its cross-species construct context.
Reason: The original uses mouse Neto1 and yeast/heterologous experiments, including an explicitly human PSD-95 GW1 construct and PDZ1–3 in HEK-cell coimmunoprecipitation. The partner is a receptor-associated auxiliary protein; association does not establish that PSD-95 binds glutamate or that Neto1 itself is the NMDA receptor pore. Retain this supporting interaction rather than transfer the function of the whole receptor complex.
GO:0005515 protein binding
IPI
PMID:20018661
Identification of a small-molecule inhibitor of the PICK1 PD...
MODIFY
Summary: Specify the directly measured NMDA-receptor tail interface.
Reason: Recombinant PSD-95 PDZ1/2 binding to the NR2B tail is a positive fluorescence-polarization assay in this original. Negative results for screened small-molecule inhibitors do not negate the receptor interaction. This supports ionotropic glutamate-receptor binding while retaining the isolated-domain/tail assay scope.
GO:0005515 protein binding
IPI
PMID:20018661
Identification of a small-molecule inhibitor of the PICK1 PD...
KEEP AS NON CORE
Summary: Retain the positive CRIPT–PDZ3 control interaction.
Reason: The original directly uses CRIPT-tail binding to PSD-95 PDZ3 as a positive fluorescence-polarization control. It establishes a selective interface, not a whole-protein neuronal mechanism or general physiological recognition of free peptides. Negative inhibitor screens are not treated as negative CRIPT binding.
GO:0005515 protein binding
IPI
PMID:20962234
Regulation of synaptic Rac1 activity, long-term potentiation...
MODIFY
Summary: Specify binding to the BCR/ABR GTPase-activating proteins.
Reason: The original tests BCR and ABR motif-dependent PSD-95 interactions with yeast, GST/heterologous assays and rat-brain complexes. Both partners have GTPase-activating roles; this class describes the recognized partners without transferring GAP catalysis to DLG4. The study also shows their spine localization does not require the PSD-95 interaction, so binding is not converted into an obligatory targeting mechanism.
GO:0005515 protein binding
IPI
PMID:21653829
Protein interactome reveals converging molecular pathways am...
MODIFY
Summary: Specify recognition of postsynaptic DLGAP scaffolds.
Reason: The literal source tests a PSD-95 guanylate-kinase-like fragment (residues 546–724) against the identified DLGAP partner in the neuronal interaction map. The partner is a postsynaptic scaffold and the class is consistent with independent DLGAP/PSD-95 domain biology. Preserve the positive fragment interaction without claiming that every pair received the paper-wide orthogonal validation or that a full-length affinity was measured.
Proposed replacements: scaffold protein binding
GO:0005515 protein binding
IPI
PMID:21653829
Protein interactome reveals converging molecular pathways am...
MODIFY
Summary: Specify recognition of the SPAR GTPase-activating protein.
Reason: The map records PSD-95 fragments 298–550 and 546–724 interacting with SIPA1L1/SPAR. SPAR has a Rap GTPase-activating role, and independent targeted human PSD-95 SH3-GK experiments support the interaction. The class concerns the binding partner, not GAP activity of DLG4; high-throughput fragment detection is not relabeled as a native full-length complex assay.
GO:0005515 protein binding
IPI
PMID:21653829
Protein interactome reveals converging molecular pathways am...
MODIFY
Summary: Specify alpha-actinin recognition.
Reason: The literal neuronal-map assay links PSD-95 residues 298–550 to ACTN2, an F-actin-crosslinking alpha-actinin. GO:0051393 names that binding partner class without assigning actin binding or bundling to DLG4. The result is a retested fragment interaction, not a claim that this exact pair was among the randomly selected mammalian coimmunoprecipitation validations.
Proposed replacements: alpha-actinin binding
GO:0005515 protein binding
IPI
PMID:21653829
Protein interactome reveals converging molecular pathways am...
MODIFY
Summary: Specify the established NMDA-receptor partner class.
Reason: The literal human interaction record supports the PSD-95/NMDA-receptor pair in the cited two-hybrid mapping study. Independent receptor-tail assays establish the same class-specific interface. Preserve the exact mapped construct scope and do not equate a two-hybrid positive with a measured full-length membrane complex or an independent ion-channel activity of DLG4.
GO:0005515 protein binding
IPI
PMID:21653829
Protein interactome reveals converging molecular pathways am...
KEEP AS NON CORE
Summary: Retain the fragment-map RALBP1 association.
Reason: The literal neuronal-map record tests PSD-95 residues 298–550 against RALBP1. Although RALBP1 is a multifunctional GAP/scaffold, this fragment-screen result does not resolve which physiological RALBP1 role the DLG4 association serves. Keep the positive binding evidence without automatically importing a GAP, transporter or adaptor subclass from the partner annotation.
GO:0005515 protein binding
IPI
PMID:21653829
Protein interactome reveals converging molecular pathways am...
KEEP AS NON CORE
Summary: Retain the PRR16 fragment-map interaction.
Reason: The neuronal interaction map contains a positive, retested DLG4–PRR16 association. It does not establish a more specific partner-dependent molecular role for DLG4 or demonstrate that this individual pair underwent every orthogonal assay reported for the study. Preserve positive binding as non-core with the construct limitation.
GO:0005515 protein binding
IPI
PMID:21653829
Protein interactome reveals converging molecular pathways am...
MODIFY
Summary: Specify recognition of postsynaptic DLGAP scaffolds.
Reason: The literal source tests a PSD-95 guanylate-kinase-like fragment (residues 546–724) against the identified DLGAP partner in the neuronal interaction map. The partner is a postsynaptic scaffold and the class is consistent with independent DLGAP/PSD-95 domain biology. Preserve the positive fragment interaction without claiming that every pair received the paper-wide orthogonal validation or that a full-length affinity was measured.
Proposed replacements: scaffold protein binding
GO:0005515 protein binding
IPI
PMID:22117215
Guanylate kinase domains of the MAGUK family scaffold protei...
MODIFY
Summary: Specify phosphorylation-dependent recognition by the SH3-GK module.
Reason: The original explicitly uses human PSD-95 SH3-GK residues 426–724 or GK residues 531–724 to recognize phosphorylated DLGAP1, SPAR or LGN-derived ligands. The literal LGN partner is mouse Q8VDU0. These PSD-95 assays are distinct from the SAP97 structural experiments. Phosphoprotein binding captures the measured recognition mechanism; it does not infer kinase activity, all-product equivalence or full-length native stoichiometry.
Proposed replacements: phosphoprotein binding
GO:0005515 protein binding
IPI
PMID:22117215
Guanylate kinase domains of the MAGUK family scaffold protei...
MODIFY
Summary: Specify phosphorylation-dependent recognition by the SH3-GK module.
Reason: The original explicitly uses human PSD-95 SH3-GK residues 426–724 or GK residues 531–724 to recognize phosphorylated DLGAP1, SPAR or LGN-derived ligands. The literal LGN partner is mouse Q8VDU0. These PSD-95 assays are distinct from the SAP97 structural experiments. Phosphoprotein binding captures the measured recognition mechanism; it does not infer kinase activity, all-product equivalence or full-length native stoichiometry.
Proposed replacements: phosphoprotein binding
GO:0005515 protein binding
IPI
PMID:22117215
Guanylate kinase domains of the MAGUK family scaffold protei...
MODIFY
Summary: Specify phosphorylation-dependent recognition by the SH3-GK module.
Reason: The original explicitly uses human PSD-95 SH3-GK residues 426–724 or GK residues 531–724 to recognize phosphorylated DLGAP1, SPAR or LGN-derived ligands. The literal LGN partner is mouse Q8VDU0. These PSD-95 assays are distinct from the SAP97 structural experiments. Phosphoprotein binding captures the measured recognition mechanism; it does not infer kinase activity, all-product equivalence or full-length native stoichiometry.
Proposed replacements: phosphoprotein binding
GO:0005515 protein binding
IPI
PMID:23260144
Multiple autism-linked genes mediate synapse elimination via...
MODIFY
Summary: Specify binding to the E3 ubiquitin ligase MDM2.
Reason: The original includes PSD-95/MDM2 coimmunoprecipitation and recombinant GST/His interaction assays in the source-specific mouse/heterologous context. MDM2 is the E3 enzyme; PSD-95 is its binding partner and ubiquitination substrate. GO:0031625 captures that interaction without making DLG4 a ligase or a participant in proteolysis merely because it is degraded.
Proposed replacements: ubiquitin protein ligase binding
GO:0005515 protein binding
IPI
PMID:25780553
The association of GPR85 with PSD-95-neuroligin complex and ...
KEEP AS NON CORE
Summary: Retain motif-dependent association with the orphan receptor GPR85.
Reason: The actual original tests a human GPR85 C-terminal sequence against PSD-95 in mouse-brain and COS-cell extracts. Deleting YCVI abolishes the association and PDZ1 is implicated. This is controlled receptor-tail recognition, but the receptor remains orphan and the assay does not resolve a DLG4-dependent ligand-triggered signaling function. Keep the positive association without inferring a specific signaling subclass or transferring the reported GPR85-variant phenotypes.
GO:0005515 protein binding
IPI
PMID:27066583
Dysfunctional ADAM22 implicated in progressive encephalopath...
KEEP AS NON CORE
Summary: Retain ADAM22 association in the neuronal scaffold.
Reason: The source tests human ADAM22 variants: wild type and C401Y retain PSD-95 binding, whereas the frameshift removing the terminal PDZ-binding motif does not. ADAM22 is a noncatalytic metalloprotease-like receptor. This supports scaffold association without enzyme-binding inference from its family name or a claim that PSD-95 has ADAM22 ligand activity.
GO:0005515 protein binding
IPI
PMID:30126976
Proteome-wide analysis of phospho-regulated PDZ domain inter...
KEEP AS NON CORE
Summary: Retain the source-specific PDZ3–tail interaction.
Reason: The literal source records a DLG4 PDZ3 construct (residues 313–388) against a nine-residue partner tail in the phosphomimetic phage-display study. The library compares native and S/T-to-Glu variants; such a display hit is not full-length physiological validation or direct evidence of phosphorylation in cells. Preserve the positive interface without assigning a separate peptide function or automatically transferring the full partner class to DLG4.
GO:0005515 protein binding
IPI
PMID:30126976
Proteome-wide analysis of phospho-regulated PDZ domain inter...
MODIFY
Summary: Specify Preso recognition using the independent physiological evidence.
Reason: The source maps DLG4 PDZ3 to the FRMPD4/Preso C-terminal tail, with the phosphomimetic-library scope retained. Independent PMID:19118189 establishes Preso as a PSD-95-associated cytoskeletal regulator. GO:0005519 therefore has biological support beyond the peptide-display reagent; no full-length validation is claimed for the display experiment itself.
GO:0005515 protein binding
IPI
PMID:30126976
Proteome-wide analysis of phospho-regulated PDZ domain inter...
KEEP AS NON CORE
Summary: Retain the source-specific PDZ3–tail interaction.
Reason: The literal source records a DLG4 PDZ3 construct (residues 313–388) against a nine-residue partner tail in the phosphomimetic phage-display study. The library compares native and S/T-to-Glu variants; such a display hit is not full-length physiological validation or direct evidence of phosphorylation in cells. Preserve the positive interface without assigning a separate peptide function or automatically transferring the full partner class to DLG4.
GO:0005515 protein binding
IPI
PMID:30126976
Proteome-wide analysis of phospho-regulated PDZ domain inter...
KEEP AS NON CORE
Summary: Retain the source-specific PDZ3–tail interaction.
Reason: The literal source records a DLG4 PDZ3 construct (residues 313–388) against a nine-residue partner tail in the phosphomimetic phage-display study. The library compares native and S/T-to-Glu variants; such a display hit is not full-length physiological validation or direct evidence of phosphorylation in cells. Preserve the positive interface without assigning a separate peptide function or automatically transferring the full partner class to DLG4.
GO:0005515 protein binding
IPI
PMID:30126976
Proteome-wide analysis of phospho-regulated PDZ domain inter...
KEEP AS NON CORE
Summary: Retain the source-specific PDZ3–tail interaction.
Reason: The literal source records a DLG4 PDZ3 construct (residues 313–388) against a nine-residue partner tail in the phosphomimetic phage-display study. The library compares native and S/T-to-Glu variants; such a display hit is not full-length physiological validation or direct evidence of phosphorylation in cells. Preserve the positive interface without assigning a separate peptide function or automatically transferring the full partner class to DLG4.
GO:0005515 protein binding
IPI
PMID:30126976
Proteome-wide analysis of phospho-regulated PDZ domain inter...
KEEP AS NON CORE
Summary: Retain the source-specific PDZ3–tail interaction.
Reason: The literal source records a DLG4 PDZ3 construct (residues 313–388) against a nine-residue partner tail in the phosphomimetic phage-display study. The library compares native and S/T-to-Glu variants; such a display hit is not full-length physiological validation or direct evidence of phosphorylation in cells. Preserve the positive interface without assigning a separate peptide function or automatically transferring the full partner class to DLG4.
GO:0005515 protein binding
IPI
PMID:30126976
Proteome-wide analysis of phospho-regulated PDZ domain inter...
KEEP AS NON CORE
Summary: Retain the source-specific PDZ3–tail interaction.
Reason: The literal source records a DLG4 PDZ3 construct (residues 313–388) against a nine-residue partner tail in the phosphomimetic phage-display study. The library compares native and S/T-to-Glu variants; such a display hit is not full-length physiological validation or direct evidence of phosphorylation in cells. Preserve the positive interface without assigning a separate peptide function or automatically transferring the full partner class to DLG4.
GO:0005515 protein binding
IPI
PMID:30126976
Proteome-wide analysis of phospho-regulated PDZ domain inter...
KEEP AS NON CORE
Summary: Retain the source-specific PDZ3–tail interaction.
Reason: The literal source records a DLG4 PDZ3 construct (residues 313–388) against a nine-residue partner tail in the phosphomimetic phage-display study. The library compares native and S/T-to-Glu variants; such a display hit is not full-length physiological validation or direct evidence of phosphorylation in cells. Preserve the positive interface without assigning a separate peptide function or automatically transferring the full partner class to DLG4.
GO:0005515 protein binding
IPI
PMID:33961781
Dual proteome-scale networks reveal cell-specific remodeling...
KEEP AS NON CORE
Summary: Retain the APBA1 co-complex association.
Reason: The exact BioPlex record is human APBA1–DLG4 anti-tag coimmunoprecipitation, with the tandem C-terminal tag on APBA1. This is positive co-complex association, not necessarily direct binary binding. The separate zero composite for APBA1 tail/domain measurements does not refute this whole-cell association, and no extra adaptor subclass is inferred from it.
GO:0005515 protein binding
IPI
PMID:35914814
Chr21 protein-protein interactions: enrichment in proteins i...
KEEP AS NON CORE
Summary: Retain the TIAM1 fragment interaction.
Reason: The human-brain interaction-map record identifies DLG4 residues 131–306 with TIAM1. The paper-specific DSCAM control fragment is a different construct and is not substituted for the DLG4 record. Retain the positive fragment association without assuming a native neuronal complex or importing a GEF-regulatory role merely from the TIAM1 partner identity.
GO:0005515 protein binding
IPI
PMID:35914814
Chr21 protein-protein interactions: enrichment in proteins i...
MODIFY
Summary: Specify the established NMDA-receptor partner class.
Reason: The literal human interaction record supports the PSD-95/NMDA-receptor pair in the cited two-hybrid mapping study. Independent receptor-tail assays establish the same class-specific interface. Preserve the exact mapped construct scope and do not equate a two-hybrid positive with a measured full-length membrane complex or an independent ion-channel activity of DLG4.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the TTC24 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for A2A3L6 (TTC24; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.71313467, PDZ2=4.95032285, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the E6 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for A4U7F2 (E6; taxon 37120); maximum source COMP values by tested domain are PDZ1=4.57731572, PDZ2=4.95559468, PDZ3=4.22878709. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SMCHD1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for A6NHR9 (SMCHD1; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.81503968, PDZ2=4.15087457, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SLC15A5 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for A6NIM6 (SLC15A5; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.29042338, PDZ2=4.22215443, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the NCBP2L association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for A6PVI3 (NCBP2L; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.24621548, PDZ2=4.63914613, PDZ3=4.166638. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the KCNJ18 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for B7U540 (KCNJ18; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.66202413, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The PPP1R3G source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for B7ZBB8 (PPP1R3G; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.012306 to 0.021925), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
PMID:36115835
pairs that fell below holdup quantification threshold should not be considered as β€œnon-interactions”.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the TMEM178B association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for H3BS89 (TMEM178B; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=3.495263. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the CCL24 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O00175 (CCL24; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.63562141, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ARVCF association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O00192 (ARVCF; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.2, PDZ2=4.81, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SLC1A7 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O00341 (SLC1A7; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.43946332, PDZ2=4.66763364, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the CCRL2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O00421 (CCRL2; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.70574057, PDZ2=4.66355474, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the DLL1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O00548 (DLL1; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.93, PDZ2=4.39, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The CACNA1A source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O00555 (CACNA1A; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.14765 to 0.0034204), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The PODXL source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O00592 (PODXL; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.020234 to -0.0036475), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the CES2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O00748 (CES2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=4.00291642, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the CLDN4 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O14493 (CLDN4; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.53676732, PDZ2=0, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the CIT association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O14578 (CIT; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=3.61997396. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The NHERF1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O14745 (NHERF1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.02236 to -0.00665), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the RGS12 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O14924 (RGS12; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.22, PDZ2=4.13, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The TECPR2 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O15040 (TECPR2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.10774 to 0.011311), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The AXIN1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O15169 (AXIN1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.034748 to 0.0025692), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SLC16A3 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O15427 (SLC16A3; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.90339086, PDZ2=4.20358255, PDZ3=3.93946331. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ABCC4 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O15439 (ABCC4; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.22572465, PDZ2=4.22906153, PDZ3=3.85283303. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the CLDN3 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O15551 (CLDN3; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.63037365, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the PLXNB1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O43157 (PLXNB1; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.6823779, PDZ2=4.20282772, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ARHGAP6 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O43182 (ARHGAP6; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.13175304, PDZ2=4.42062894, PDZ3=3.46083268. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The GRID2 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O43424 (GRID2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.061566 to 0.040882), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The AKAP10 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O43572 (AKAP10; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.059764 to 0.011674), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The PRKN source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O60260 (PRKN; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range 0.0057621 to 0.045725), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the EVI5 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O60447 (EVI5; taxon 9606); maximum source COMP values by tested domain are PDZ1=5.78883695, PDZ2=5.8671601, PDZ3=4.44292385. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SLC16A7 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O60669 (SLC16A7; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=4.11227095, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The LPXN source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O60711 (LPXN; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range 0.0033358 to 0.021005), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The CYTIP source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O60759 (CYTIP; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.02788 to 0.00583), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the RAMP3 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O60896 (RAMP3; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.0164687, PDZ2=3.97843429, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The NOS1AP source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O75052 (NOS1AP; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.096993 to 0.037344), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The SDC3 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O75056 (SDC3; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.11179 to -0.004912), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the FZD7 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O75084 (FZD7; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.39709875, PDZ2=4.68940004, PDZ3=4.01950325. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the LRP4 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O75096 (LRP4; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.16588307, PDZ2=4.68789973, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The BANF1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O75531 (BANF1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.092659 to 0.0305), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the STK16 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O75716 (STK16; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.87278647, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SLC22A3 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O75751 (SLC22A3; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.54934176, PDZ2=0, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the CIB2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O75838 (CIB2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=3.49941559. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the DGKI association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O75912 (DGKI; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.61441891, PDZ2=4.97147496, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the FCHSD2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O94868 (FCHSD2; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.88883909, PDZ2=4.20165093, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SLCO2B1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O94956 (SLCO2B1; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.82831603, PDZ2=3.91485286, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The SBF1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O95248 (SBF1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.047985 to 0.029254), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ABCC6 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O95255 (ABCC6; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.54875336, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The CLDN7 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O95471 (CLDN7; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range 0.03118 to 0.046386), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ABCA1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O95477 (ABCA1; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.52, PDZ2=5.25, PDZ3=3.78. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The CLDN9 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O95484 (CLDN9; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.053869 to 0.048811), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The CLDN14 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O95500 (CLDN14; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.017297 to 0.031125), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SEMA4F association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O95754 (SEMA4F; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.67129187, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the CLDN1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for O95832 (CLDN1; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.59968389, PDZ2=0, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the TGFA association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P01135 (TGFA; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.75113375, PDZ2=4.82430874, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the E6 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 6 sequence-supported measurement(s) for P03126 (E6; taxon 333760); maximum source COMP values by tested domain are PDZ1=4.72821247, PDZ2=4.66473498, PDZ3=5.06144244. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the Tax association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P03409 (Tax; taxon 11926); maximum source COMP values by tested domain are PDZ1=5.21794545, PDZ2=5.51048738, PDZ3=5.33663621. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the MAS1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P04201 (MAS1; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.97996409, PDZ2=4.45452983, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ERBB2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P04626 (ERBB2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.47558014, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the GYPC association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P04921 (GYPC; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.60703067, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the E6 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P06427 (E6; taxon 10586); maximum source COMP values by tested domain are PDZ1=4.57001477, PDZ2=4.77198838, PDZ3=5.32016033. The selected nonzero composite supports the isolated PDZ–ligand interface. The three unmatched HPV33-E6 phosphopeptide candidates are excluded from the selected mapping; the positive interpretation uses sequence-supported measurements. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the E6 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 6 sequence-supported measurement(s) for P06463 (E6; taxon 333761); maximum source COMP values by tested domain are PDZ1=5.10527909, PDZ2=5.46125705, PDZ3=5.73528449. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The ADRB2 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P07550 (ADRB2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range 0.0129 to 0.03303), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the IGF1R association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P08069 (IGF1R; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.76483572, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the PFKM association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P08237 (PFKM; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.93283903, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ADRB1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P08588 (ADRB1; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.03432495, PDZ2=4.22260487, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the TMEM225B association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P0DP42 (TMEM225B; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.59615495, PDZ2=4.049807, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The POLR1D source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P0DPB6 (POLR1D; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.055257 to 0.044521), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The E source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P0DTC4 (E; taxon 2697049); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.0025863 to 0.017853), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The KIT source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P10721 (KIT; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.011862 to 0.016607), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the HSPA5 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P11021 (HSPA5; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.50289662, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SLC2A1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P11166 (SLC2A1; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.50757116, PDZ2=3.94960459, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SLC2A3 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P11169 (SLC2A3; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.12245866, PDZ2=4.21291421, PDZ3=3.69631721. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
MODIFY
Summary: Specify the independently supported BCR partner class.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P11274 (BCR; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.67191575, PDZ2=4.8124892, PDZ3=3.69592016. Independent BCR/ABR motif-controlled cellular and brain assays establish the GTPase-activating partner context. This does not give DLG4 GAP activity. The PDZ-domain/reagent measurements do not establish a native full-length complex, endogenous affinity or equivalent behavior of all DLG4 products.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The SRC source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P12931 (SRC; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.010196 to 0.048364), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The CFTR source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P13569 (CFTR; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.0058475 to 0.012191), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the NCF1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P14598 (NCF1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=4.51025812, PDZ3=3.66833886. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The JUP source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P14923 (JUP; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.11481 to 0.005817), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the CD46 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P15529 (CD46; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.69782878, PDZ3=4.30413982. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The ATP2A2 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P16615-3 (ATP2A2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.14914 to 0.019254), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the PRKCA association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P17252 (PRKCA; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.07099146, PDZ2=4.53253206, PDZ3=3.87534123. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The GJA1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P17302 (GJA1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.020955 to 0.018277), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the E6 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P17386 (E6; taxon 10585); maximum source COMP values by tested domain are PDZ1=5.0249168, PDZ2=5.35902182, PDZ3=5.09869107. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The PRKACA source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P17612 (PRKACA; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.10687 to 0.0097164), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the TYRP1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P17643 (TYRP1; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.90572965, PDZ2=4.10833643, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ATP2B1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P20020 (ATP2B1; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.06281728, PDZ2=4.14506443, PDZ3=4.00628512. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The NEB source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P20929 (NEB; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.085583 to -0.0089703), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
MODIFY
Summary: Specify the independently supported KCNA4 partner class.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P22459 (KCNA4; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.66579999, PDZ2=5.19232449, PDZ3=0. Independent target-resolved KCNA4 tail assays establish a potassium-transporter interface. DLG4 is not itself a potassium channel. The PDZ-domain/reagent measurements do not establish a native full-length complex, endogenous affinity or equivalent behavior of all DLG4 products.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the KCNA5 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P22460 (KCNA5; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.83687197, PDZ2=4.43378082, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The UQCRC2 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P22695 (UQCRC2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.084672 to 0.025273), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the PTPRG association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P23470 (PTPRG; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.59015532, PDZ2=5.01415076, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the PTPRZ1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P23471 (PTPRZ1; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.65445793, PDZ2=5.09003229, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the MCC association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P23508 (MCC; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.83384861, PDZ3=3.94853477. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ATP2B4 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P23634 (ATP2B4; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.77671475, PDZ2=5.17842314, PDZ3=4.64869516. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The CXCR1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P25024 (CXCR1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.10245 to 0.015896), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the APC association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P25054 (APC; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.38, PDZ2=4.98, PDZ3=4.5. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ADRA1D association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P25100 (ADRA1D; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.88859811, PDZ2=4.54495654, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The CTNNA2 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P26232 (CTNNA2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.089519 to 0.017868), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the U2AF2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P26368 (U2AF2; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.61604701, PDZ2=0, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the E6 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P26554 (E6; taxon 10595); maximum source COMP values by tested domain are PDZ1=4.89663073, PDZ2=4.99166488, PDZ3=4.75116585. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ACVR2A association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P27037 (ACVR2A; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.32538268, PDZ3=3.70886832. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the E6 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P27228 (E6; taxon 10587); maximum source COMP values by tested domain are PDZ1=5.09080267, PDZ2=5.50663889, PDZ3=5.19609602. The selected nonzero composite supports the isolated PDZ–ligand interface. The unmatched HPV35-E6 phosphopeptide candidate with a nonzero composite is excluded. Independently sequence-supported measurements remain positive, so the conclusion does not rely on that identity mismatch. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the HTR2A association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P28223 (HTR2A; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.69172586, PDZ2=4.74163993, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the HTR2C association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P28335 (HTR2C; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.94106256, PDZ2=4.63586792, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The SDC4 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P31431 (SDC4; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.084339 to 0.023143), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the GUCY1A2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P33402 (GUCY1A2; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.02613472, PDZ2=4.49952514, PDZ3=4.86427089. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the MCM7 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P33993 (MCM7; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.76490952, PDZ2=5.11706385, PDZ3=4.33126241. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The SDC2 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P34741 (SDC2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.050506 to 0.034741), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the CRHR1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P34998 (CRHR1; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.55629176, PDZ2=4.9250185, PDZ3=4.43078855. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The CTNNA1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P35221 (CTNNA1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.09218 to -0.013873), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The CTNNB1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P35222 (CTNNB1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.039353 to 0.025787), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The SSTR5 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P35346 (SSTR5; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.10738 to 0.012355), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SCN4A association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P35499 (SCN4A; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.97778826, PDZ2=5.7112339, PDZ3=4.38826616. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
MODIFY
Summary: Specify the independently supported ACTN2 partner class.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P35609 (ACTN2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.60771572, PDZ3=0. The independent neuronal fragment map records the ACTN2 interaction, and the partner is an alpha-actinin crosslinker. The refinement concerns the recognized partner, not actin-crosslinking by DLG4. The PDZ-domain/reagent measurements do not establish a native full-length complex, endogenous affinity or equivalent behavior of all DLG4 products.
Proposed replacements: alpha-actinin binding
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the GJC1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P36383 (GJC1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.50773595, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the MAP2K2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P36507 (MAP2K2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=4.11529486, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the L2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P36762 (L2; taxon 10616); maximum source COMP values by tested domain are PDZ1=3.62, PDZ2=0, PDZ3=4.26. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the E6 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P36809 (E6; taxon 10611); maximum source COMP values by tested domain are PDZ1=4.92276181, PDZ2=5.44554092, PDZ3=4.35149536. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SLC26A3 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P40879 (SLC26A3; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.66097571, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The GRM5 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P41594 (GRM5; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.079183 to 0.003448), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the GRIA2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P42262 (GRIA2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.73072066, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The GRIA3 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P42263 (GRIA3; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.039443 to 0.025226), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SLC1A3 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P43003 (SLC1A3; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.48893477, PDZ2=0, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The SLC1A1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P43005 (SLC1A1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.084367 to 0.015682), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SLC1A4 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P43007 (SLC1A4; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.78601479, PDZ2=3.91318894, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The PTGIR source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P43119 (PTGIR; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.099655 to 0.0012969), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The GRK6 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P43250 (GRK6; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.096984 to 0.042701), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the GPR6 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P46095 (GPR6; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.74560959, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The SLCO1A2 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P46721 (SLCO1A2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.055248 to 0.036508), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The YAP1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P46937 (YAP1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range 0.015434 to 0.038008), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the GPR12 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P47775 (GPR12; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.9221589, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The MTNR1A source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P48039 (MTNR1A; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.11001 to 0.01618), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the KCNJ1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P48048 (KCNJ1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.59374066, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the KCNJ4 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P48050 (KCNJ4; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=4.17034321, PDZ3=4.11944846. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The SLC9A3 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P48764 (SLC9A3; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.073914 to 0.0087458), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The ADGRE5 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P48960 (ADGRE5; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.063332 to 0.014258), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the PTH2R association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P49190 (PTH2R; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.50773834, PDZ2=0, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The PRLHR source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P49683 (PRLHR; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.086497 to 0.0081248), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the GNG4 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P50150 (GNG4; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.05795778, PDZ2=3.95464689, PDZ3=4.16759521. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The PDLIM4 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P50479-1 (PDLIM4; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.041629 to 0.04683), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The PDLIM4 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P50479-2 (PDLIM4; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.04073 to -0.03136), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The RAB9A source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P51151 (RAB9A; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.071916 to 0.032651), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The EFNB2 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P52799 (EFNB2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.035999 to 0.028306), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the MAPK12 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P53778 (MAPK12; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=4.4470796, PDZ3=4.03024491. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SLC16A1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P53985 (SLC16A1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.49641771, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the EPHB3 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P54753 (EPHB3; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.66444252, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the CLDN8 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P56748 (CLDN8; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.79068616, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The CLDN20 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P56880 (CLDN20; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.04726 to 0.010273), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The JAM2 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P57087 (JAM2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.065122 to 0.045071), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the PTEN association with its measured fragment scope.
Reason: The published SD1 workbook resolves 6 sequence-supported measurement(s) for P60484 (PTEN; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.98232436, PDZ2=4.57892578, PDZ3=3.5582274. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The DCAF7 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P61962 (DCAF7; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.039062 to 0.0063689), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The HNRNPK source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P61978-2 (HNRNPK; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.134 to 0.030102), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The TBPL1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P62380 (TBPL1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.022019 to 0.030909), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The TUBB4B source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P68371 (TUBB4B; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.093752 to -0.043245), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the CLDN10 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P78369 (CLDN10; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.52412399, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the JAG1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P78504 (JAG1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.77873992, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ADAM17 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for P78536 (ADAM17; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.32090257, PDZ2=4.34357572, PDZ3=4.42360791. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The PLCB2 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q00722 (PLCB2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.029193 to 0.03796), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the CACNA1D association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q01668 (CACNA1D; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=4.02429144, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The SLC6A3 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q01959 (SLC6A3; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range 0.0099859 to 0.039598), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the APBA1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q02410 (APBA1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. Zero composite values do not establish biological noninteraction. Independent BioPlex anti-tag coimmunoprecipitation detects the human APBA1–DLG4 complex. This is positive co-complex evidence despite the unresolved isolated PDZ-tail measurement; it is not proof of a purified direct interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the MUC3A association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q02505 (MUC3A; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=4.16300789, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the GHRHR association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q02643 (GHRHR; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.63241461, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the FKBP4 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q02790 (FKBP4; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.58817805, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The PTH1R source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q03431 (PTH1R; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.0017568 to 0.011724), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
MODIFY
Summary: Specify the independently supported GRIN1 partner class.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q05586-2 (GRIN1; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.1, PDZ2=4.31, PDZ3=0. The exact GRIN1-2 receptor product and corresponding tail are retained. Independent domain assays support the receptor interface; natural GRIN1 products with different tails are not assumed equivalent. The PDZ-domain/reagent measurements do not establish a native full-length complex, endogenous affinity or equivalent behavior of all DLG4 products.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The TYRO3 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q06418 (TYRO3; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.098407 to 0.01187), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SLC34A1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q06495-1 (SLC34A1; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.51128595, PDZ2=0, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The VAC14 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q08AM6 (VAC14; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.056418 to 0.030069), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
MODIFY
Summary: Specify the independently supported KCNA1 partner class.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q09470 (KCNA1; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.07842764, PDZ2=4.43134245, PDZ3=3.53119908. Independent target-resolved Kv1 channel assays corroborate recognition of the KCNA1 transporter tail, without assigning transport activity to the scaffold. The PDZ-domain/reagent measurements do not establish a native full-length complex, endogenous affinity or equivalent behavior of all DLG4 products.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
MODIFY
Summary: Specify the independently supported GRIN2A partner class.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q12879 (GRIN2A; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.71434773, PDZ2=5.2909802, PDZ3=0. Independent GRIN2A-tail and neuronal interaction-map assays establish the NMDA-receptor interface, beyond the peptide reagent alone. The PDZ-domain/reagent measurements do not establish a native full-length complex, endogenous affinity or equivalent behavior of all DLG4 products.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The TRAF2 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q12933 (TRAF2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.020543 to -0.01622), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the FOXI1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q12951 (FOXI1; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.47831865, PDZ2=4.62292524, PDZ3=3.57272672. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The GRIK2 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q13002 (GRIK2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.048281 to 0.037935), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the TIAM1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q13009 (TIAM1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.88, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The independent human-brain map also detects TIAM1 with DLG4 residues 131–306. This supports association but does not establish a full-length physiological GEF-regulatory function. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The PPFIA1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q13136 (PPFIA1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.12299 to 0.019886), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
MODIFY
Summary: Specify the independently supported GRIN2B partner class.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q13224 (GRIN2B; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.37, PDZ2=4.86, PDZ3=0. Independent controlled NR2B-tail and interaction-map assays establish this NMDA-receptor recognition mechanism; negative small-molecule inhibitor tests do not negate the positive receptor interface. The PDZ-domain/reagent measurements do not establish a native full-length complex, endogenous affinity or equivalent behavior of all DLG4 products.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The CTBP1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q13363 (CTBP1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.11894 to 0.022996), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The AQP6 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q13520 (AQP6; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.055498 to 0.018901), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the DGKZ association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q13574 (DGKZ; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.7211979, PDZ2=4.9551531, PDZ3=3.83661831. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the MTMR1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q13613 (MTMR1; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.21, PDZ2=4.7, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The ARHGEF7 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q14155-1 (ARHGEF7; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range 0.01928 to 0.025209), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the FZD2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q14332 (FZD2; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.84704489, PDZ2=4.9221943, PDZ3=4.24220707. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the KCNJ12 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q14500 (KCNJ12; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.22488325, PDZ2=4.55642065, PDZ3=4.31471098. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the FAT1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q14517 (FAT1; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.41442565, PDZ2=4.80142606, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SCN5A association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q14524 (SCN5A; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.45566927, PDZ2=4.731512, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the KCNB1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q14721 (KCNB1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=4.0854157, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SLC17A1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q14916 (SLC17A1; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.82484421, PDZ2=4.03676532, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
MODIFY
Summary: Specify the independently supported GRIN2C partner class.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q14957 (GRIN2C; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.6828158, PDZ2=5.32512959, PDZ3=3.77701987. Independent target-resolved NR2C-tail fluorescence-polarization/ELISA records support the same NMDA-receptor interface. No full-length affinity is inferred from the fragment measurements. The PDZ-domain/reagent measurements do not establish a native full-length complex, endogenous affinity or equivalent behavior of all DLG4 products.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
MODIFY
Summary: Specify the independently supported FRMPD4 partner class.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q14CM0 (FRMPD4; taxon 9606); maximum source COMP values by tested domain are PDZ1=5.04871461, PDZ2=5.59916477, PDZ3=5.25131075. Independent Preso/FRMPD4 interaction and spine-actin experiments establish the partner as a cytoskeletal regulator. The term describes binding that regulator, not actin-remodeling activity of DLG4. The PDZ-domain/reagent measurements do not establish a native full-length complex, endogenous affinity or equivalent behavior of all DLG4 products.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the KARS1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q15046 (KARS1; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.13287536, PDZ2=4.35358436, PDZ3=3.57691983. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the PLCB4 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q15147 (PLCB4; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.13096648, PDZ2=4.24573733, PDZ3=3.94768785. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the NECTIN1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q15223 (NECTIN1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.73211211, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
MODIFY
Summary: Specify the independently supported ERBB4 partner class.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q15303 (ERBB4; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.87607252, PDZ2=4.96827769, PDZ3=4.23021007. Independent human-tail two-hybrid, rat-forebrain and controlled cellular assays establish ERBB4 recognition. The disputed PMID:16767099 disease-context result is not required for this refinement. The PDZ-domain/reagent measurements do not establish a native full-length complex, endogenous affinity or equivalent behavior of all DLG4 products.
Proposed replacements: receptor tyrosine kinase binding
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the RALBP1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q15311 (RALBP1; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.97224918, PDZ2=4.57643435, PDZ3=4.86756875. The selected nonzero composite supports the isolated PDZ–ligand interface. Separate phage-display and neuronal-fragment records support RALBP1 association. Its multiple GAP/scaffold roles do not by themselves identify the physiological function of this DLG4 interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the RPS6KA1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 12 sequence-supported measurement(s) for Q15418 (RPS6KA1; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.8, PDZ2=3.85, PDZ3=3.49. The selected nonzero composite supports the isolated PDZ–ligand interface. The source includes modified and unmodified RPS6KA1 reagents. The unmodified PDZ1 measurement has composite 3.67923818; the retained interaction is therefore not based solely on a phosphopeptide. This does not establish a DLG4 kinase-regulatory mechanism. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The NHERF2 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q15599 (NHERF2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.04184 to 0.00728), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the TRIP6 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q15654 (TRIP6; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.90918753, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SLC1A5 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q15758 (SLC1A5; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.55886104, PDZ2=0, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the EFNB3 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q15768 (EFNB3; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.54174605, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The PKN2 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q16513 (PKN2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.088417 to 0.024499), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the C3AR1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q16581 (C3AR1; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.58189078, PDZ2=4.65013541, PDZ3=3.54040955. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The DUSP5 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q16690 (DUSP5; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.064515 to 0.027372), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The SLC5A12 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q1EHB4 (SLC5A12; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.11151 to 0.004493), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the PRR16 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q569H4 (PRR16; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.78205571, PDZ2=5.20249325, PDZ3=4.12270396. The selected nonzero composite supports the isolated PDZ–ligand interface. The neuronal map independently records PRR16 association, but the physiological function of that interface remains unresolved. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SDK2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q58EX2 (SDK2; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.24194104, PDZ2=4.4887391, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SLC45A4 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q5BKX6 (SLC45A4; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.33169, PDZ2=4.59205745, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the XKR7 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q5GH72 (XKR7; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.93818811, PDZ2=4.91152891, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The CRB2 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q5IJ48 (CRB2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range 0.0015819 to 0.020656), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The ZNF831 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q5JPB2 (ZNF831; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.04531 to 0.048308), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the IQSEC2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q5JU85 (IQSEC2; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.81778978, PDZ2=5.31254897, PDZ3=4.17853611. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The DGKK source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q5KSL6 (DGKK; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.019447 to 0.024244), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SAPCD1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q5SSQ6 (SAPCD1; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.47807465, PDZ2=4.52782253, PDZ3=4.5921791. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The PDZK1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q5T2W1 (PDZK1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.00434 to 0.02184), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The GPRC6A source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q5T6X5 (GPRC6A; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.055573 to 0.038536), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ARHGEF16 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q5VV41 (ARHGEF16; taxon 9606); maximum source COMP values by tested domain are PDZ1=5.12500561, PDZ2=5.44432793, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ATRNL1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q5VV63 (ATRNL1; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.3301385, PDZ2=4.43285596, PDZ3=3.87071177. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the TMEM215 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q68D42 (TMEM215; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.68, PDZ2=4.66, PDZ3=3.64. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The ARHGAP17 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q68EM7 (ARHGAP17; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range 0.00061949 to 0.041645), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The DENND5A source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q6IQ26 (DENND5A; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.086687 to 0.046144), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The KCNV1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q6PIU1 (KCNV1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.074462 to 0.041023), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SLC2A7 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q6PXP3 (SLC2A7; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=4.10698028, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The CSPG4 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q6UVK1 (CSPG4; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range 0.011471 to 0.040614), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the KCNT2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q6UVM3 (KCNT2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.62321392, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the KIRREL2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q6UWL6 (KIRREL2; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.06483548, PDZ2=4.47681088, PDZ3=3.86430391. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The CES3 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q6UWW8 (CES3; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.089715 to 0.018619), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the TMIGD1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q6UXZ0 (TMIGD1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.78372797, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The DCHS2 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q6V1P9 (DCHS2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.08011 to 0.017863), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the NPSR1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q6W5P4 (NPSR1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=3.49185152. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The PLEKHG7 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q6ZR37 (PLEKHG7; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.053826 to 0.045552), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the RASSF6 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q6ZTQ3 (RASSF6; taxon 9606); maximum source COMP values by tested domain are PDZ1=5.03650552, PDZ2=5.47936249, PDZ3=4.39282736. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the GOLT1A association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q6ZVE7 (GOLT1A; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.04442921, PDZ2=4.71468156, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the RSRC2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q7L4I2 (RSRC2; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.49172018, PDZ2=0, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the NET1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q7Z628 (NET1; taxon 9606); maximum source COMP values by tested domain are PDZ1=5.20735135, PDZ2=5.76764534, PDZ3=4.91779595. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ORF putative E6 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q81964 (ORF putative E6; taxon 37115); maximum source COMP values by tested domain are PDZ1=5.10591576, PDZ2=5.45149662, PDZ3=4.20967964. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the E6 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q82005 (E6; taxon 51033); maximum source COMP values by tested domain are PDZ1=3.96692603, PDZ2=4.13834805, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ADGRA1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q86SQ6 (ADGRA1; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.99199611, PDZ2=5.08169623, PDZ3=4.60511899. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The MYPN source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q86TC9 (MYPN; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.022966 to 0.040857), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the MARCHF3 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q86UD3 (MARCHF3; taxon 9606); maximum source COMP values by tested domain are PDZ1=5.4838791, PDZ2=6.03249026, PDZ3=4.93768507. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ZSCAN30 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q86W11 (ZSCAN30; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.59093259, PDZ2=4.9483022, PDZ3=4.21531111. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The UNC93A source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q86WB7 (UNC93A; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.075295 to -0.0024687), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the DGKH association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q86XP1 (DGKH; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.85150275, PDZ2=3.91825111, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the RNF130 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q86XS8 (RNF130; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.51340959, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The TRIM50 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q86XT4 (TRIM50; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.077472 to -0.0011704), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the MARCHF9 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q86YJ5 (MARCHF9; taxon 9606); maximum source COMP values by tested domain are PDZ1=5.05813444, PDZ2=5.27009156, PDZ3=4.80628349. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the PLEKHH2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8IVE3 (PLEKHH2; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.90971141, PDZ2=3.70406577, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The FMNL3 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8IVF7 (FMNL3; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.090267 to 0.028581), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the NOSTRIN association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8IVI9 (NOSTRIN; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=3.50341266. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The SLC22A9 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8IVM8 (SLC22A9; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.15696 to 0.0076471), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the TMEM151B association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8IW70 (TMEM151B; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.97872211, PDZ2=4.58582585, PDZ3=4.10700362. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ADGRA3 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8IWK6 (ADGRA3; taxon 9606); maximum source COMP values by tested domain are PDZ1=5.21027861, PDZ2=5.41393063, PDZ3=4.93644403. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The SCN4B source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8IWT1 (SCN4B; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.0028669 to 0.039853), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The AMOTL1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8IY63 (AMOTL1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.14056 to 0.0046505), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ABCA7 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8IZY2 (ABCA7; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.69711357, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the NLGN4X association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8N0W4 (NLGN4X; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.5135919, PDZ2=3.97488658, PDZ3=4.03889104. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the DOCK4 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8N1I0 (DOCK4; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=3.68962198. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the LNX2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8N448 (LNX2; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.44, PDZ2=4.36, PDZ3=3.58. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The SH2D3C source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8N5H7 (SH2D3C; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.044091 to 0.031879), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The CLDN19 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8N6F1 (CLDN19; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.067769 to -0.005553), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the KIR3DL3 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8N743 (KIR3DL3; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.03601652, PDZ2=4.21942624, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the TMEM178A association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8NBL3 (TMEM178A; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.33523612, PDZ2=4.61018738, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the LSM14A association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8ND56-2 (LSM14A; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.70866812, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The TNRC6A source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8NDV7 (TNRC6A; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.031025 to 0.031728), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The GARIN6 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8NEG0 (GARIN6; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range 0.0058261 to 0.043044), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the TRPV3 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8NET8 (TRPV3; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.35563093, PDZ2=4.40257652, PDZ3=4.19889165. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The GOT1L1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8NHS2 (GOT1L1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.071247 to 0.030826), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the GAS2L2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8NHY3 (GAS2L2; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.03406325, PDZ2=4.68891322, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the VANGL1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8TAA9 (VANGL1; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.39955355, PDZ2=4.70844033, PDZ3=4.51441237. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the FAM110D association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8TAY7 (FAM110D; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.83461773, PDZ2=5.62643418, PDZ3=4.42439748. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The LNX1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8TBB1 (LNX1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.03652 to 0.03091), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The SHKBP1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8TBC3 (SHKBP1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.01141 to 0.02682), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the FAM110B association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8TC76 (FAM110B; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.06212909, PDZ2=4.52942106, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The MYOZ3 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8TDC0 (MYOZ3; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.015649 to 0.044622), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the FAT3 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8TDW7 (FAT3; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.36324359, PDZ2=4.56909767, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the RAPGEF6 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8TEU7 (RAPGEF6; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.6, PDZ2=4.05, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The SHROOM3 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8TF72 (SHROOM3; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range 0.0139 to 0.03771), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the PPP1R13L association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8WUF5 (PPP1R13L; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.54416213, PDZ2=0, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The HDAC7 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8WUI4 (HDAC7; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.0076847 to 0.017814), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the GAB3 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8WWW8 (GAB3; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.78926443, PDZ2=4.03012557, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The PALLD source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8WX93-1 (PALLD; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.0061944 to 0.022944), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the CNKSR2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8WXI2 (CNKSR2; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.4, PDZ2=4.98, PDZ3=3.74. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the CACNG8 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q8WXS5 (CACNG8; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.39622883, PDZ2=4.94035868, PDZ3=4.89343071. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The AQP3 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q92482 (AQP3; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.11161 to 0.0040908), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The MYO18A source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q92614 (MYO18A; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.02619 to -0.0068), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the LPAR1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q92633 (LPAR1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=4.00921787, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the CREBBP association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q92793 (CREBBP; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.53937028, PDZ2=0, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The EZH1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q92800 (EZH1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.082826 to 0.026067), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the KCNJ9 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q92806 (KCNJ9; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.67033783, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The CAVIN3 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q969G5 (CAVIN3; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.057901 to 0.046069), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the EXOC4 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q96A65 (EXOC4; taxon 9606); maximum source COMP values by tested domain are PDZ1=5.24907997, PDZ2=5.85463744, PDZ3=4.50028343. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the OTULIN association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q96BN8 (OTULIN; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.10785699, PDZ2=4.19854418, PDZ3=3.95587561. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the BPIFA2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q96DR5 (BPIFA2; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.37859885, PDZ2=4.56220051, PDZ3=3.71683507. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ARHGEF26 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q96DR7 (ARHGEF26; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.6781923, PDZ2=4.84660014, PDZ3=3.80474195. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SIPA1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q96FS4 (SIPA1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.53911203, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the KIRREL1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q96J84 (KIRREL1; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.32324967, PDZ2=4.63991329, PDZ3=4.39983914. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The PDLIM2 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q96JY6 (PDLIM2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.01353 to 0.03071), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the PBK association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q96KB5 (PBK; taxon 9606); maximum source COMP values by tested domain are PDZ1=5.11095666, PDZ2=5.55266621, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the GJD4 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q96KN9 (GJD4; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=4.10568938, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ZNF599 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q96NL3 (ZNF599; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.97711753, PDZ2=5.6361064, PDZ3=4.38083402. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ADGRA2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q96PE1 (ADGRA2; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.94292019, PDZ2=5.21833552, PDZ3=4.4710828. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the KCNA7 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q96RP8 (KCNA7; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.63777205, PDZ2=5.11122954, PDZ3=4.16414226. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The SLC22A12 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q96S37 (SLC22A12; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.068967 to 0.042131), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the PKP4 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q99569 (PKP4; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.26312795, PDZ2=4.62202505, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the PTPN18 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q99952 (PTPN18; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.06760935, PDZ2=4.25779907, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the RASL11B association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9BPW5 (RASL11B; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.65139037, PDZ2=5.08077907, PDZ3=4.92663997. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the AGMAT association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9BSE5 (AGMAT; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.69301243, PDZ2=5.28592914, PDZ3=4.23082169. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the RTKN association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9BST9 (RTKN; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.19, PDZ2=4.27, PDZ3=4.35. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the FAM167B association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9BTA0 (FAM167B; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.34598407, PDZ2=4.125192, PDZ3=4.38311961. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the MKNK1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9BUB5 (MKNK1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=3.50159769. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The JAM3 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9BX67 (JAM3; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.086711 to -0.02005), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The TBC1D10A source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9BXI6 (TBC1D10A; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.10946 to -0.0083517), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The ACE2 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9BYF1 (ACE2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.04762 to 0.03948), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the PRKD2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9BZL6 (PRKD2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.47988198, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The CNTNAP4 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9C0A0 (CNTNAP4; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.03205 to -0.00466), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SEMA4C association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9C0C4 (SEMA4C; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.98982991, PDZ2=4.22096797, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the TANC1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9C0D5 (TANC1; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.72895975, PDZ2=5.03635158, PDZ3=4.27174335. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The EGLN1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9GZT9 (EGLN1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.076095 to 0.017206), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the MUC3B association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9H195 (MUC3B; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=4.13548821, PDZ3=3.81697741. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The TRPV6 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9H1D0 (TRPV6; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.097028 to 0.020404), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the FZD8 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9H461 (FZD8; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.69243053, PDZ2=0, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The CCDC134 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9H6E4 (CCDC134; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.11546 to 0.029564), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the PLEKHA2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9HB19 (PLEKHA2; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.6938966, PDZ2=4.38131295, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The PLEKHA1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9HB21 (PLEKHA1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.04489 to 0.038746), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The CACYBP source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9HB71 (CACYBP; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.00405 to -0.00167), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the LRRC4 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9HBW1 (LRRC4; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.43572756, PDZ2=4.7615865, PDZ3=4.17005522. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the TANC2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9HCD6 (TANC2; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.31931019, PDZ2=4.59596149, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the NRXN3 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9HDB5 (NRXN3; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.66805004, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the E6 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9IR59 (E6; taxon 129724); maximum source COMP values by tested domain are PDZ1=4.64993161, PDZ2=4.89636311, PDZ3=4.43219713. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The MYOZ1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9NP98 (MYOZ1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.0061703 to 0.00073031), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The MYOZ2 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9NPC6 (MYOZ2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.029613 to 0.018274), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the AKIP1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9NQ31 (AKIP1; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.59598678, PDZ2=0, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the PLCB1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9NQ66 (PLCB1; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.5089717, PDZ2=0, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the PDLIM7 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9NR12-1 (PDLIM7; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.49, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the BAZ1A association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9NRL2 (BAZ1A; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.85217711, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the CYSLTR2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9NS75 (CYSLTR2; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.91588795, PDZ2=5.37768706, PDZ3=6.54993384. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the IGSF5 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9NSI5 (IGSF5; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.15001776, PDZ2=4.49021791, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the LRRC4B association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9NT99 (LRRC4B; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.01973906, PDZ2=4.55407697, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the RNF146 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9NTX7 (RNF146; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.60135946, PDZ2=5.06919341, PDZ3=3.50291756. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The TRMT13 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9NUP7 (TRMT13; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.10428 to 0.020026), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ASNSD1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9NWL6 (ASNSD1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.53923198, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The NDE1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9NXR1-2 (NDE1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.066519 to 0.037306), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SLCO1C1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9NYB5 (SLCO1C1; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.28942701, PDZ2=4.78183298, PDZ3=4.18327426. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the DACT1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9NYF0 (DACT1; taxon 9606); maximum source COMP values by tested domain are PDZ1=5.01977756, PDZ2=5.22079099, PDZ3=4.26143119. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The PTTG2 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9NZH5 (PTTG2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.10236 to 0.040309), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the CRIPT association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9P021 (CRIPT; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.37100686, PDZ2=4.90202596, PDZ3=5.39382842. The selected nonzero composite supports the isolated PDZ–ligand interface. Independent fluorescence-polarization experiments use CRIPT as a positive PDZ3 ligand. This supports interface recognition without asserting that DLG4 itself binds microtubules. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ADAM22 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9P0K1 (ADAM22; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.91733325, PDZ2=4.18203965, PDZ3=4.22817602. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The WHRN source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9P202 (WHRN; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.059623 to 0.007172), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The KIF17 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9P2E2 (KIF17; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.015577 to 0.015427), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the MARCHF4 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9P2E8 (MARCHF4; taxon 9606); maximum source COMP values by tested domain are PDZ1=5.03056502, PDZ2=5.27869676, PDZ3=4.87489991. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the RRBP1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9P2E9 (RRBP1; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.12152416, PDZ2=4.27260014, PDZ3=3.63911023. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The CGN source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9P2M7 (CGN; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.02914 to 0.0491), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the GP1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9Q6P4 (GP1; taxon 1968826); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.70420783, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the MYOT association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9UBF9 (MYOT; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.53466706, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the COMMD3 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9UBI1 (COMMD3; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.97499475, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the CACNG4 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9UBN1 (CACNG4; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.51439251, PDZ2=4.88499739, PDZ3=4.84616526. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The EPHA6 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9UF33 (EPHA6; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.020175 to 0.0076249), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ASIC3 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9UHC3 (ASIC3; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.77909517, PDZ2=3.97089556, PDZ3=3.59644717. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The CNTNAP2 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9UHC6 (CNTNAP2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.061394 to 0.029414), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SLC23A1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9UHI7 (SLC23A1; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.90259226, PDZ2=4.15359898, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The APPL1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9UKG1 (APPL1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.070605 to 0.029092), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the GJD2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9UKL4 (GJD2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.65443667, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The HCN2 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9UL51 (HCN2; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.027285 to 0.019879), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The TRPC5 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9UL62 (TRPC5; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.10701 to 0.0068688), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The NRXN1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9ULB1 (NRXN1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.03109 to 0.04482), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the KIDINS220 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9ULH0 (KIDINS220; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.49568499, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The SHROOM4 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9ULL8 (SHROOM4; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.00081 to 0.03215), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the FZD4 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9ULV1 (FZD4; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.85319204, PDZ2=4.92360797, PDZ3=3.7891747. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the FZD10 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9ULW2 (FZD10; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.01433092, PDZ2=4.1105081, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the FZD1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9UP38 (FZD1; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.70290095, PDZ2=4.93635798, PDZ3=3.75645904. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the PDZRN3 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9UPQ7 (PDZRN3; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.84, PDZ2=4.15, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the TNRC6B association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9UPQ9 (TNRC6B; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.4990353, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SORCS3 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9UPU3 (SORCS3; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.2609041, PDZ2=4.28212597, PDZ3=3.71073082. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the CTNND2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9UQB3 (CTNND2; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.36884966, PDZ2=4.71934906, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the SCN8A association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9UQD0 (SCN8A; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.52135502, PDZ3=4.60374011. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
MODIFY
Summary: Specify the independently supported DLGAP4 partner class.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9Y2H0 (DLGAP4; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The three PDZ-tail composites are zero, but the independent neuronal map records a DLG4 GK-domain (546–724) interaction with the DLGAP4 scaffold. This domain-specific positive evidence supports scaffold binding without falsely converting the PDZ measurements to positives. The PDZ-domain/reagent measurements do not establish a native full-length complex, endogenous affinity or equivalent behavior of all DLG4 products.
Proposed replacements: scaffold protein binding
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the GDA association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9Y2T3 (GDA; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.8323311, PDZ2=4.41900015, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The GRIP1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9Y3R0 (GRIP1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.10325 to 0.04323), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the RAPGEF2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9Y4G8 (RAPGEF2; taxon 9606); maximum source COMP values by tested domain are PDZ1=3.59, PDZ2=3.95, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The KCTD3 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9Y597 (KCTD3; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.04247 to -0.01213), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the MMP24 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9Y5R2 (MMP24; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=4.02867703, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the FLVCR1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9Y5Y0 (FLVCR1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.840994, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the F11R association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9Y624 (F11R; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.47452094, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the ADGRG1 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9Y653 (ADGRG1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=3.60224244, PDZ3=0. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the CACNG2 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9Y698 (CACNG2; taxon 9606); maximum source COMP values by tested domain are PDZ1=4.50348399, PDZ2=4.88907458, PDZ3=4.68570494. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The SLCO1B1 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9Y6L6 (SLCO1B1; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.064187 to 0.026596), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The USH1C source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9Y6N9 (USH1C; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range 0.01736 to 0.03569), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
UNDECIDED
Summary: The CAPN6 source-pair assertion remains unresolved at the recovered measurement level.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9Y6Q1 (CAPN6; taxon 9606); maximum source COMP values by tested domain are PDZ1=0, PDZ2=0, PDZ3=0. The selected DAPF records are below the normalized binding-intensity quantification threshold of 0.05 (range -0.11709 to 0.015553), and none has a positive matched fluorescence-polarization measurement. Their zero composite is a censored assay result, not zero affinity. Negative binding intensities represent no measurable depletion relative to the control and experimental noise, not negative affinity. The original study explicitly cautions that below-threshold pairs are not demonstrated noninteractions. The imported positive IPI assertion is preserved, but binding for these specific fragments remains unquantified; neither a credible positive interface nor absence of binding is established. Retain source-specific uncertainty without inferring a native full-length role.
Supporting Evidence:
GO:0005515 protein binding
IPI
PMID:36115835
Quantitative fragmentomics allow affinity mapping of interac...
KEEP AS NON CORE
Summary: Retain the DUSP10 association with its measured fragment scope.
Reason: The published SD1 workbook resolves 3 sequence-supported measurement(s) for Q9Y6W6 (DUSP10; taxon 9606); maximum source COMP values by tested domain are PDZ1=5.16047647, PDZ2=5.46511872, PDZ3=4.005198. The selected nonzero composite supports the isolated PDZ–ligand interface. The assay does not establish the physiological role of the full-length pair. Retain positive binding without naming a free-peptide biological function or importing an enzymatic/receptor subclass solely from the partner identity.
GO:0005515 protein binding
IPI
PMID:7477295
Clustering of Shaker-type K+ channels by interaction with a ...
MODIFY
Summary: Specify binding to the identified potassium-channel partner.
Reason: The curated original-source records explicitly pair human DLG4 PDZ-region constructs with the indicated rat Kv1 channel, using two-hybrid and far-western assays and relevant tail/domain controls. The original abstract supports channel clustering, but the full paper was not independently recovered. Transmembrane-transporter binding describes the established interface class without making DLG4 a channel, asserting identical affinity for every Kv1 subtype or erasing the cross-species assay.
GO:0005515 protein binding
IPI
PMID:7477295
Clustering of Shaker-type K+ channels by interaction with a ...
MODIFY
Summary: Specify binding to the identified potassium-channel partner.
Reason: The curated original-source records explicitly pair human DLG4 PDZ-region constructs with the indicated rat Kv1 channel, using two-hybrid and far-western assays and relevant tail/domain controls. The original abstract supports channel clustering, but the full paper was not independently recovered. Transmembrane-transporter binding describes the established interface class without making DLG4 a channel, asserting identical affinity for every Kv1 subtype or erasing the cross-species assay.
GO:0005515 protein binding
IPI
PMID:7477295
Clustering of Shaker-type K+ channels by interaction with a ...
MODIFY
Summary: Specify binding to the identified potassium-channel partner.
Reason: The curated original-source records explicitly pair human DLG4 PDZ-region constructs with the indicated rat Kv1 channel, using two-hybrid and far-western assays and relevant tail/domain controls. The original abstract supports channel clustering, but the full paper was not independently recovered. Transmembrane-transporter binding describes the established interface class without making DLG4 a channel, asserting identical affinity for every Kv1 subtype or erasing the cross-species assay.
GO:0005515 protein binding
IPI
PMID:7477295
Clustering of Shaker-type K+ channels by interaction with a ...
MODIFY
Summary: Specify the independently supported human KCNA4 interaction.
Reason: This curated PMID:7477295 source has an abstract-only access boundary and no matched current raw pair was recovered for human KCNA4 P22459. Independent PMID:11937501 records directly test its cytoplasmic tail against DLG4 PDZ1 by fluorescence polarization and peptide ELISA. The biological refinement is therefore supported while the exact original panel remains unverified; no source identity is rewritten.
GO:0005515 protein binding
IPI
PMID:7477295
Clustering of Shaker-type K+ channels by interaction with a ...
MODIFY
Summary: Specify binding to the identified potassium-channel partner.
Reason: The curated original-source records explicitly pair human DLG4 PDZ-region constructs with the indicated rat Kv1 channel, using two-hybrid and far-western assays and relevant tail/domain controls. The original abstract supports channel clustering, but the full paper was not independently recovered. Transmembrane-transporter binding describes the established interface class without making DLG4 a channel, asserting identical affinity for every Kv1 subtype or erasing the cross-species assay.
GO:0005737 cytoplasm
IEA
GO_REF:0000120
MODIFY
Summary: Resolve broad cytoplasmic localization into supported intracellular pools.
Reason: The imported orthology/rule assignment is biologically sound. PSD-95 occupies a soluble cytosolic pool as well as the intracellular postsynaptic density and trafficking-associated endocytic-vesicle membrane. Rat/heterologous localization and the explicit P78352 Reactome entities independently support these locations. These replacements describe verified pools, not exclusive localization or equivalent trafficking of all three natural products.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: GRANULARITY MISMATCH
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0005737 cytoplasm
ISS
GO_REF:0000024
MODIFY
Summary: Resolve broad cytoplasmic localization into supported intracellular pools.
Reason: The imported orthology/rule assignment is biologically sound. PSD-95 occupies a soluble cytosolic pool as well as the intracellular postsynaptic density and trafficking-associated endocytic-vesicle membrane. Rat/heterologous localization and the explicit P78352 Reactome entities independently support these locations. These replacements describe verified pools, not exclusive localization or equivalent trafficking of all three natural products.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: GRANULARITY MISMATCH
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0005737 cytoplasm
ISS
GO_REF:0000024
MODIFY
Summary: Resolve broad cytoplasmic localization into supported intracellular pools.
Reason: The imported orthology/rule assignment is biologically sound. PSD-95 occupies a soluble cytosolic pool as well as the intracellular postsynaptic density and trafficking-associated endocytic-vesicle membrane. Rat/heterologous localization and the explicit P78352 Reactome entities independently support these locations. These replacements describe verified pools, not exclusive localization or equivalent trafficking of all three natural products.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: GRANULARITY MISMATCH
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0005783 endoplasmic reticulum
IEA
GO_REF:0000107
UNDECIDED
Summary: The specific endoplasmic-reticulum localization remains unresolved.
Reason: The literal mouse Q62108 donor carries an IDA assertion from PMID:16814779. Its accessible abstract establishes ER localization of BSRP proteins, but does not expose the PSD-95 experiment; the original was not recovered. This is an access limitation, not evidence of paralog misattribution or absence of an ER pool. Retain the source assertion unresolved rather than inferring it from the other neuronal locations. ORGANELLES ER check (2026-11-05): QuickGO confirms that this IDA from PMID:16814779 is the only ER annotation on mouse Q62108, the source of both this IEA projection and the ISS row; the paper has no PMC full text, so whether PSD-95 was assayed as an ER-localized protein or as a synaptic comparator cannot be checked. PSD-95 is a cytosolic, palmitoylated peripheral-membrane scaffold with no signal peptide or TM segment, so any ER pool would be a surface-associated one at the root, and no sub-compartment row is possible. Both rows stay UNDECIDED; MARK_AS_OVER_ANNOTATED would be the call if the full text shows PSD-95 only as a marker of another compartment.
Propagation Review
Root cause: UNRESOLVED
Sources checked:
UniProtKB:Q62108 UNRESOLVED
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0005783 endoplasmic reticulum
ISS
GO_REF:0000024
UNDECIDED
Summary: The specific endoplasmic-reticulum localization remains unresolved.
Reason: The literal mouse Q62108 donor carries an IDA assertion from PMID:16814779. Its accessible abstract establishes ER localization of BSRP proteins, but does not expose the PSD-95 experiment; the original was not recovered. This is an access limitation, not evidence of paralog misattribution or absence of an ER pool. Retain the source assertion unresolved rather than inferring it from the other neuronal locations. ORGANELLES ER check (2026-11-05): QuickGO confirms that this IDA from PMID:16814779 is the only ER annotation on mouse Q62108, the source of both this IEA projection and the ISS row; the paper has no PMC full text, so whether PSD-95 was assayed as an ER-localized protein or as a synaptic comparator cannot be checked. PSD-95 is a cytosolic, palmitoylated peripheral-membrane scaffold with no signal peptide or TM segment, so any ER pool would be a surface-associated one at the root, and no sub-compartment row is possible. Both rows stay UNDECIDED; MARK_AS_OVER_ANNOTATED would be the call if the full text shows PSD-95 only as a marker of another compartment.
Propagation Review
Root cause: UNRESOLVED
Sources checked:
UniProtKB:Q62108 UNRESOLVED
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0005829 cytosol
TAS
Reactome:R-HSA-6797554
ACCEPT
Summary: DLG4 has a supported cytosolic scaffold pool.
Reason: The exact Reactome event contains P78352 entity 6794267 in cytosol, through the DLG2/DLG3/DLG4 member set and postsynaptic scaffold assembly. This is not merely transfer of a reaction-wide compartment. Independent PSD-95 localization shows soluble cytosolic protein as well as membrane-associated pools.
GO:0005886 plasma membrane
EXP
PMID:12151521
Postsynaptic targeting of alternative postsynaptic density-9...
ACCEPT
Summary: DLG4 associates with the plasma membrane in several cellular contexts.
Reason: Plasma-membrane association is valid and deliberately retains the range of neuronal and nonneuronal contexts. The beta/alpha localization study, ortholog evidence and mouse embryonic epithelial imaging support multiple membrane pools, rather than an exclusive postsynaptic compartment. The HPA summary is currently uncertain and is not treated as the sole localization proof. Product-specific targeting mechanisms and the source-specific assay limitations remain separate.
GO:0005886 plasma membrane
IDA
GO_REF:0000052
ACCEPT
Summary: DLG4 associates with the plasma membrane in several cellular contexts.
Reason: Plasma-membrane association is valid and deliberately retains the range of neuronal and nonneuronal contexts. The beta/alpha localization study, ortholog evidence and mouse embryonic epithelial imaging support multiple membrane pools, rather than an exclusive postsynaptic compartment. The HPA summary is currently uncertain and is not treated as the sole localization proof. Product-specific targeting mechanisms and the source-specific assay limitations remain separate.
GO:0005886 plasma membrane
IEA
GO_REF:0000120
ACCEPT
Summary: DLG4 associates with the plasma membrane in several cellular contexts.
Reason: Plasma-membrane association is valid and deliberately retains the range of neuronal and nonneuronal contexts. The beta/alpha localization study, ortholog evidence and mouse embryonic epithelial imaging support multiple membrane pools, rather than an exclusive postsynaptic compartment. The HPA summary is currently uncertain and is not treated as the sole localization proof. Product-specific targeting mechanisms and the source-specific assay limitations remain separate.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0005886 plasma membrane
ISS
GO_REF:0000024
ACCEPT
Summary: DLG4 associates with the plasma membrane in several cellular contexts.
Reason: Plasma-membrane association is valid and deliberately retains the range of neuronal and nonneuronal contexts. The beta/alpha localization study, ortholog evidence and mouse embryonic epithelial imaging support multiple membrane pools, rather than an exclusive postsynaptic compartment. The HPA summary is currently uncertain and is not treated as the sole localization proof. Product-specific targeting mechanisms and the source-specific assay limitations remain separate.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0005886 plasma membrane
TAS
Reactome:R-HSA-416320
ACCEPT
Summary: DLG4 is a plasma-membrane-associated component of the modeled signaling assembly.
Reason: The event-specific typed Reactome input/output or catalyst-complex path reaches the actual P78352 DLG4 entity 202135, explicitly located at plasma membrane. It is a scaffold component; receptor gating, GEF catalysis and extracellular ligand binding belong to its partners. Preserve the modeled membrane location without transferring the activity of the whole complex to DLG4.
GO:0005886 plasma membrane
TAS
Reactome:R-HSA-432164
ACCEPT
Summary: DLG4 is a plasma-membrane-associated component of the modeled signaling assembly.
Reason: The event-specific typed Reactome input/output or catalyst-complex path reaches the actual P78352 DLG4 entity 202135, explicitly located at plasma membrane. It is a scaffold component; receptor gating, GEF catalysis and extracellular ligand binding belong to its partners. Preserve the modeled membrane location without transferring the activity of the whole complex to DLG4.
GO:0005886 plasma membrane
TAS
Reactome:R-HSA-451283
ACCEPT
Summary: DLG4 is a plasma-membrane-associated component of the modeled signaling assembly.
Reason: The event-specific typed Reactome input/output or catalyst-complex path reaches the actual P78352 DLG4 entity 202135, explicitly located at plasma membrane. It is a scaffold component; receptor gating, GEF catalysis and extracellular ligand binding belong to its partners. Preserve the modeled membrane location without transferring the activity of the whole complex to DLG4.
GO:0005886 plasma membrane
TAS
Reactome:R-HSA-451311
ACCEPT
Summary: DLG4 is a plasma-membrane-associated component of the modeled signaling assembly.
Reason: The event-specific typed Reactome input/output or catalyst-complex path reaches the actual P78352 DLG4 entity 202135, explicitly located at plasma membrane. It is a scaffold component; receptor gating, GEF catalysis and extracellular ligand binding belong to its partners. Preserve the modeled membrane location without transferring the activity of the whole complex to DLG4.
GO:0005886 plasma membrane
TAS
Reactome:R-HSA-5671993
ACCEPT
Summary: DLG4 is a plasma-membrane-associated component of the modeled signaling assembly.
Reason: The event-specific typed Reactome input/output or catalyst-complex path reaches the actual P78352 DLG4 entity 202135, explicitly located at plasma membrane. It is a scaffold component; receptor gating, GEF catalysis and extracellular ligand binding belong to its partners. Preserve the modeled membrane location without transferring the activity of the whole complex to DLG4.
GO:0005886 plasma membrane
TAS
Reactome:R-HSA-5672965
ACCEPT
Summary: DLG4 is a plasma-membrane-associated component of the modeled signaling assembly.
Reason: The event-specific typed Reactome input/output or catalyst-complex path reaches the actual P78352 DLG4 entity 202135, explicitly located at plasma membrane. It is a scaffold component; receptor gating, GEF catalysis and extracellular ligand binding belong to its partners. Preserve the modeled membrane location without transferring the activity of the whole complex to DLG4.
GO:0005886 plasma membrane
TAS
Reactome:R-HSA-5682794
ACCEPT
Summary: DLG4 is a plasma-membrane-associated component of the modeled signaling assembly.
Reason: The event-specific typed Reactome input/output or catalyst-complex path reaches the actual P78352 DLG4 entity 202135, explicitly located at plasma membrane. It is a scaffold component; receptor gating, GEF catalysis and extracellular ligand binding belong to its partners. Preserve the modeled membrane location without transferring the activity of the whole complex to DLG4.
GO:0005886 plasma membrane
TAS
Reactome:R-HSA-8849878
ACCEPT
Summary: DLG4 is a plasma-membrane-associated component of the modeled signaling assembly.
Reason: The event-specific typed Reactome input/output or catalyst-complex path reaches the actual P78352 DLG4 entity 202135, explicitly located at plasma membrane. It is a scaffold component; receptor gating, GEF catalysis and extracellular ligand binding belong to its partners. Preserve the modeled membrane location without transferring the activity of the whole complex to DLG4.
GO:0005886 plasma membrane
TAS
Reactome:R-HSA-8849891
ACCEPT
Summary: DLG4 is a plasma-membrane-associated component of the modeled signaling assembly.
Reason: The event-specific typed Reactome input/output or catalyst-complex path reaches the actual P78352 DLG4 entity 202135, explicitly located at plasma membrane. It is a scaffold component; receptor gating, GEF catalysis and extracellular ligand binding belong to its partners. Preserve the modeled membrane location without transferring the activity of the whole complex to DLG4.
GO:0005886 plasma membrane
TAS
Reactome:R-HSA-8849906
ACCEPT
Summary: DLG4 is a plasma-membrane-associated component of the modeled signaling assembly.
Reason: The event-specific typed Reactome input/output or catalyst-complex path reaches the actual P78352 DLG4 entity 202135, explicitly located at plasma membrane. It is a scaffold component; receptor gating, GEF catalysis and extracellular ligand binding belong to its partners. Preserve the modeled membrane location without transferring the activity of the whole complex to DLG4.
GO:0005912 adherens junction
NAS
PMID:23397623
Polarity protein complex Scribble/Lgl/Dlg and epithelial cel...
MODIFY
Summary: Generalize the epithelial location to the independently supported cell junction.
Reason: The examined PMID:23397623 adherens-junction mechanism explicitly concerns mammalian DLG1 and Scribble; it does not establish the cadherin-catenin-defined junction for DLG4. Independent original PMID:21920314 directly images mouse Dlg4 at epithelial cell junctions and broadly along the plasma membrane, supporting the less specific cell-junction assignment. This preserves positive epithelial localization without transferring DLG1-specific adherens-junction machinery.
Proposed replacements: cell junction
GO:0007165 signal transduction
TAS
PMID:10364559
Specific coupling of NMDA receptor activation to nitric oxid...
MODIFY
Summary: Specify the NMDA-receptor signaling context.
Reason: The source abstract directly reports that PSD-95 depletion uncouples NMDAR activation from nitric-oxide signaling while leaving receptor currents and calcium entry intact. Together with the established receptor-adaptor mechanism, this supports the existing NMDA-selective glutamate-receptor signaling term rather than undifferentiated signal transduction. The abstract does not establish the species or every construct; those are not invented.
GO:0007204 positive regulation of cytosolic calcium ion concentration
ISS
GO_REF:0000024
MODIFY
Summary: PSD-95 restrains the tested 5-HT2A receptor calcium response.
Reason: The literal donor annotation assigns positive regulation, but the indexed primary Results and Figure 3 of PMID:20531396 show that disrupting the 5-HT2A PDZ interface or reducing PSD-95 unmasks a receptor-dependent calcium response. A terminal-mutant peptide, scrambled RNA and a 5-HT2A antagonist provide controls. This supports negative regulation in that specific neuronal receptor assay, not a global assertion that DLG4 decreases calcium in every context. The original positive source term and donor identity remain unchanged. The indexed primary excerpts include calcium-imaging methods, but do not establish the species of the neuronal culture.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: REGULATORY SIGN INVERSION
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered. The primary receptor-specific experiment supports an inhibitory effect; the concern is the positive sign of this annotation, not the quality of the paper or donor ancestry.
Supporting Evidence:
PMID:20531396
it revealed functional 5-HT(2A) receptor-operated Ca(2+) responses in neurons, an effect mimicked by knockdown of PSD-95.
GO:0007268 chemical synaptic transmission
IBA
GO_REF:0000033
ACCEPT
Summary: DLG4 contributes to chemical synaptic transmission as a receptor scaffold.
Reason: The conserved adaptor organizes neurotransmitter receptors and associated signaling proteins. The PAINT assertion is placed on the actual ancestral lineage, the InterPro mapping is literal, and the mouse PSD-95 mutant study demonstrates altered synaptic plasticity. This is scaffold participation in transmission, not neurotransmitter release or channel activity attributed to DLG4.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
PANTHER:PTN000563569 SUPPORTS TRANSFER
Literal IBD at the Bilateria node on the actual human target path. Descendant evidence: MGI:MGI:1344351|FB:FBgn0001624. The target appearing among descendant sources is not circular evidence.
GO:0007268 chemical synaptic transmission
IEA
GO_REF:0000002
ACCEPT
Summary: DLG4 contributes to chemical synaptic transmission as a receptor scaffold.
Reason: The conserved adaptor organizes neurotransmitter receptors and associated signaling proteins. The PAINT assertion is placed on the actual ancestral lineage, the InterPro mapping is literal, and the mouse PSD-95 mutant study demonstrates altered synaptic plasticity. This is scaffold participation in transmission, not neurotransmitter release or channel activity attributed to DLG4.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
InterPro:IPR016313 SUPPORTS TRANSFER
The literal automated condition, mapping or source term was traced; the biological scope is assessed in the reason.
GO:0007268 chemical synaptic transmission
TAS
PMID:9853749
Enhanced long-term potentiation and impaired learning in mic...
ACCEPT
Summary: DLG4 contributes to chemical synaptic transmission as a receptor scaffold.
Reason: The conserved adaptor organizes neurotransmitter receptors and associated signaling proteins. The PAINT assertion is placed on the actual ancestral lineage, the InterPro mapping is literal, and the mouse PSD-95 mutant study demonstrates altered synaptic plasticity. This is scaffold participation in transmission, not neurotransmitter release or channel activity attributed to DLG4.
GO:0007399 nervous system development
IBA
GO_REF:0000033
KEEP AS NON CORE
Summary: Retain nervous-system development as a broader consequence of synaptic organization.
Reason: PAINT places the developmental function on the inherited DLG lineage, consistent with conserved synapse maturation. The human sequence/expression paper alone is not a developmental perturbation experiment. The broader developmental assertion remains supported by the integrated ortholog literature, while receptor/adaptor organization is the more informative core function.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
PANTHER:PTN000563569 SUPPORTS TRANSFER
Literal IBD at the Bilateria node on the actual human target path. Descendant evidence: MGI:MGI:1277959|RGD:2505|FB:FBgn0001624|MGI:MGI:1344351|RGD:619895|RGD:68424. The target appearing among descendant sources is not circular evidence.
GO:0007399 nervous system development
TAS
PMID:9286702
Human postsynaptic density-95 (PSD95): location of the gene ...
KEEP AS NON CORE
Summary: Retain nervous-system development as a broader consequence of synaptic organization.
Reason: PAINT places the developmental function on the inherited DLG lineage, consistent with conserved synapse maturation. The human sequence/expression paper alone is not a developmental perturbation experiment. The broader developmental assertion remains supported by the integrated ortholog literature, while receptor/adaptor organization is the more informative core function.
GO:0007612 learning
TAS
PMID:9853749
Enhanced long-term potentiation and impaired learning in mic...
KEEP AS NON CORE
Summary: Retain the learning phenotype as a non-core organismal process.
Reason: The source explicitly reports impaired spatial learning in PSD-95 mutant mice alongside shifted synaptic plasticity, despite unchanged NMDAR currents and gross synaptic morphology. This supports the curated organismal association, not a separate learning-specific molecular activity or a new human assay.
GO:0008021 synaptic vesicle
IEA
GO_REF:0000107
UNDECIDED
Summary: The precise synaptic-vesicle location is not resolved by the recovered evidence.
Reason: Mouse Q62108 has IDA grounding in PMID:16520334. Its accessible abstract directly describes PSD-95 at presynaptic photoreceptor membranes, while its statement about presynaptic vesicles concerns Mpp4. The full PSD-95 localization panels were not recovered. Do not equate a presynaptic membrane with a synaptic vesicle, but do not reject the curator assertion from this abstract-only boundary.
Propagation Review
Root cause: UNRESOLVED
Sources checked:
UniProtKB:Q62108 UNRESOLVED
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0008021 synaptic vesicle
ISS
GO_REF:0000024
UNDECIDED
Summary: The precise synaptic-vesicle location is not resolved by the recovered evidence.
Reason: Mouse Q62108 has IDA grounding in PMID:16520334. Its accessible abstract directly describes PSD-95 at presynaptic photoreceptor membranes, while its statement about presynaptic vesicles concerns Mpp4. The full PSD-95 localization panels were not recovered. Do not equate a presynaptic membrane with a synaptic vesicle, but do not reject the curator assertion from this abstract-only boundary.
Propagation Review
Root cause: UNRESOLVED
Sources checked:
UniProtKB:Q62108 UNRESOLVED
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0008076 voltage-gated potassium channel complex
ISS
GO_REF:0000024
ACCEPT
Summary: PSD-95 is a scaffold component of voltage-gated potassium-channel complexes.
Reason: The literal rat donor is grounded in PMID:20089912. Rat-brain co-immunoprecipitation detects PSD-95 with Kv1.2, ADAM22 and other scaffold components, while heterologous clustering supports assembly. This denotes complex membership; coexpression did not change the measured Kv1.2 electrophysiological properties and does not make PSD-95 a channel subunit that forms the pore.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0014069 postsynaptic density
IEA
GO_REF:0000120
MODIFY
Summary: Locate the scaffold within the intracellular postsynaptic density.
Reason: The donor and electronic assignments correctly place PSD-95 at the postsynaptic density. Direct ultrastructural and perturbation evidence places the protein in its intracellular scaffold component, where it organizes vertical filaments and associated receptor/scaffold structures. This refinement does not deny separately supported membrane or presynaptic pools.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: GRANULARITY MISMATCH
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0014069 postsynaptic density
ISS
GO_REF:0000024
MODIFY
Summary: Locate the scaffold within the intracellular postsynaptic density.
Reason: The donor and electronic assignments correctly place PSD-95 at the postsynaptic density. Direct ultrastructural and perturbation evidence places the protein in its intracellular scaffold component, where it organizes vertical filaments and associated receptor/scaffold structures. This refinement does not deny separately supported membrane or presynaptic pools.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: GRANULARITY MISMATCH
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0014069 postsynaptic density
ISS
GO_REF:0000024
MODIFY
Summary: Locate the scaffold within the intracellular postsynaptic density.
Reason: The donor and electronic assignments correctly place PSD-95 at the postsynaptic density. Direct ultrastructural and perturbation evidence places the protein in its intracellular scaffold component, where it organizes vertical filaments and associated receptor/scaffold structures. This refinement does not deny separately supported membrane or presynaptic pools.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: GRANULARITY MISMATCH
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0014069 postsynaptic density
ISS
GO_REF:0000024
MODIFY
Summary: Locate the scaffold within the intracellular postsynaptic density.
Reason: The donor and electronic assignments correctly place PSD-95 at the postsynaptic density. Direct ultrastructural and perturbation evidence places the protein in its intracellular scaffold component, where it organizes vertical filaments and associated receptor/scaffold structures. This refinement does not deny separately supported membrane or presynaptic pools.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: GRANULARITY MISMATCH
Sources checked:
UniProtKB:Q6AYP5 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0016020 membrane
IEA
GO_REF:0000107
MODIFY
Summary: Specify supported plasma-membrane and trafficking-vesicle membrane pools.
Reason: The mouse-derived membrane annotation is valid but omits the relevant locations. Independent localization and the exact human Reactome entities establish plasma-membrane association and an endocytic-vesicle membrane pool. DLG4 is a peripheral scaffold; this does not imply transmembrane topology or identical lipid anchoring of every product.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: GRANULARITY MISMATCH
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0016188 synaptic vesicle maturation
ISS
GO_REF:0000024
UNDECIDED
Summary: Synaptic-vesicle maturation needs source-level clarification.
Reason: The mouse donor carries IDA/IGI evidence from PMID:15603741. Its recovered abstract reports PSD-95 palmitoylation, postsynaptic clustering and AMPA-mediated transmission, but does not resolve the synaptic-vesicle-maturation experiment. Because the full original was unavailable, retain uncertainty rather than declaring a source error or extrapolating vesicle maturation from postsynaptic signaling.
Propagation Review
Root cause: UNRESOLVED
Sources checked:
UniProtKB:Q62108 UNRESOLVED
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0019900 kinase binding
IDA
PMID:21119615
DGKΞΉ regulates presynaptic release during mGluR-dependent LT...
KEEP AS NON CORE
Summary: Retain kinase recognition as a supporting scaffold interaction.
Reason: PSD-95 interacts with the lipid kinase DGKI in motif-controlled cellular experiments and rat-brain complexes. The literal InterPro mapping and matching ARBA conditions support the broad kinase-binding class; kinase binding does not imply DLG4 kinase activity. The DGKI source does not justify restricting this assertion to protein kinases, and partner recognition is part of a broader adaptor mechanism.
GO:0019900 kinase binding
IEA
GO_REF:0000120
KEEP AS NON CORE
Summary: Retain kinase recognition as a supporting scaffold interaction.
Reason: PSD-95 interacts with the lipid kinase DGKI in motif-controlled cellular experiments and rat-brain complexes. The literal InterPro mapping and matching ARBA conditions support the broad kinase-binding class; kinase binding does not imply DLG4 kinase activity. The DGKI source does not justify restricting this assertion to protein kinases, and partner recognition is part of a broader adaptor mechanism.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
ARBA:ARBA00028600 SUPPORTS TRANSFER
The literal automated condition, mapping or source term was traced; the biological scope is assessed in the reason.
InterPro:IPR016313 SUPPORTS TRANSFER
The literal automated condition, mapping or source term was traced; the biological scope is assessed in the reason.
GO:0019901 protein kinase binding
IBA
GO_REF:0000033
KEEP AS NON CORE
Summary: Retain inherited protein-kinase binding separately from the DGKI interaction.
Reason: The source is a genuine PAINT IBD on ancestral PTN001136892 with experimental rat-family grounding, including the Dlg4 lineage. Its protein-kinase claim is distinct from the lipid-kinase assay in PMID:21119615. Preserve the supported partner class without inferring catalysis or treating a source containing the target as circular.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
PANTHER:PTN001136892 SUPPORTS TRANSFER
Literal IBD at the Metazoa-Choanoflagellida node on the actual human target path. Descendant evidence: RGD:708527|RGD:68424|RGD:2505. The target appearing among descendant sources is not circular evidence.
GO:0019903 protein phosphatase binding
ISS
GO_REF:0000024
MODIFY
Summary: Generalize the experimentally grounded partner class to phosphatase binding.
Reason: The literal rat donor IPI evidence points to PMID:20410104. That original tests PSD-95 association with MTMR2, a phosphoinositide phosphatase, using motif controls and cellular/brain complexes. It does not establish protein-phosphatase substrate specificity for that partner. GO:0019902 retains the demonstrated phosphatase interaction without the erroneous protein-phosphatase restriction.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: GRANULARITY MISMATCH
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.The original partner MTMR2 is a lipid phosphatase; the protein-phosphatase restriction is not retained.
Proposed replacements: phosphatase binding
GO:0030054 cell junction
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: Retain an epithelial cell-junction pool.
Reason: Original PMID:21920314 explicitly examines all four mouse Dlgs and detects Dlg4 at epithelial cell junctions, broadly along the plasma membrane in the embryo. The source foregrounds Dlg3 but genuinely assays Dlg4. Preserve this nonneuronal context rather than replacing every junction location by a neuronal synapse.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0030054 cell junction
ISS
GO_REF:0000024
KEEP AS NON CORE
Summary: Retain an epithelial cell-junction pool.
Reason: Original PMID:21920314 explicitly examines all four mouse Dlgs and detects Dlg4 at epithelial cell junctions, broadly along the plasma membrane in the embryo. The source foregrounds Dlg3 but genuinely assays Dlg4. Preserve this nonneuronal context rather than replacing every junction location by a neuronal synapse.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0030160 synaptic receptor adaptor activity
ISS
GO_REF:0000024
ACCEPT
Summary: DLG4 physically organizes synaptic receptors and downstream signaling partners.
Reason: The rat orthology assertion and cached human GO-CAM model identify a receptor-adaptor role at the intracellular postsynaptic density. Direct receptor-tail and SH3-GK partner recognition support physical bridging within the integrated scaffold. This is not autonomous receptor or enzymatic activity.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
RGD:68424 SUPPORTS TRANSFER
The literal automated condition, mapping or source term was traced; the biological scope is assessed in the reason.
GO:0030165 PDZ domain binding
ISS
GO_REF:0000024
KEEP AS NON CORE
Summary: Retain the distinct capacity to bind partner PDZ domains.
Reason: The rat donor has experimental annotations from PMID:10644767, PMID:15024025 and PMID:25424568. This source term denotes binding a partner PDZ domain, not simply possessing three PDZ domains or binding receptor-tail peptides. Retain the curator-supported partner interaction class with this distinction; no additional specific partner mechanism is inferred from an unread full original.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
IEA
GO_REF:0000044
KEEP AS NON CORE
Summary: Retain axonal scaffold localization outside the major postsynaptic pool.
Reason: Direct ortholog experiments locate PSD-95 at juxtaparanodes and cerebellar basket-cell terminals. These support the subcellular-location mapping and demonstrate that postsynaptic enrichment is not an absolute exclusion from axons.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
UniProtKB-SubCell:SL-0279 SUPPORTS TRANSFER
The literal automated condition, mapping or source term was traced; the biological scope is assessed in the reason.
GO:0030425 dendrite
IEA
GO_REF:0000120
ACCEPT
Summary: DLG4 occupies dendritic signaling compartments.
Reason: The inherited dendritic location is consistent with direct neuronal localization, receptor organization and dendritic-spine ultrastructure. Dendritic shaft and soluble trafficking pools are not automatically reduced to the spine alone.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0030666 endocytic vesicle membrane
TAS
Reactome:R-HSA-416320
KEEP AS NON CORE
Summary: Retain the modeled endocytic-vesicle membrane pool.
Reason: The exact trafficking event R-HSA-416320 uses TARP-PSD95-Mdm2 input 416851 containing P78352 entity 416847 in endocytic-vesicle membrane and produces a corresponding plasma-membrane assembly. This supports a trafficking pool without assuming that every product or all receptor trafficking follows this route.
GO:0030674 protein-macromolecule adaptor activity
ISS
GO_REF:0000024
MODIFY
Summary: Specify the synaptic receptor-adaptor role.
Reason: The broad adaptor assertion fits DLG4, and curated GO-CAM context plus receptor/downstream partner recognition support the more informative synaptic receptor-adaptor term. A missing same-term row in the current mouse query does not erase the well-supported biological role or establish a circular source.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: GRANULARITY MISMATCH
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
No current same-term donor row was returned; independent biological evidence is described in the reason. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0030863 cortical cytoskeleton
IDA
PMID:12151521
Postsynaptic targeting of alternative postsynaptic density-9...
UNDECIDED
Summary: The particular cortical-cytoskeleton assertion remains unverified.
Reason: The source has positive alpha/beta synaptic localization evidence, but separately recovered primary excerpts did not settle this exact cortical-cytoskeleton experiment. The normal cache is abstract-only. Retain uncertainty without denying the established postsynaptic scaffold or inventing a cytoskeletal fractionation assay.
GO:0031594 neuromuscular junction
IBA
GO_REF:0000033
KEEP AS NON CORE
Summary: Retain the inherited neuromuscular-junction context as non-core.
Reason: PAINT places the assertion at the genuine bilaterian DLG ancestor with fly and mammalian descendant evidence; the corresponding InterPro mapping is literal. DLG4 is on that lineage, and donor count or an absence of a newly read human assay does not refute ancestral placement. This specialized junction context is not asserted as the predominant human DLG4 location.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
PANTHER:PTN000563569 SUPPORTS TRANSFER
Literal IBD at the Bilateria node on the actual human target path. Descendant evidence: MGI:MGI:107231|FB:FBgn0001624. The target appearing among descendant sources is not circular evidence.
GO:0031594 neuromuscular junction
IEA
GO_REF:0000002
KEEP AS NON CORE
Summary: Retain the inherited neuromuscular-junction context as non-core.
Reason: PAINT places the assertion at the genuine bilaterian DLG ancestor with fly and mammalian descendant evidence; the corresponding InterPro mapping is literal. DLG4 is on that lineage, and donor count or an absence of a newly read human assay does not refute ancestral placement. This specialized junction context is not asserted as the predominant human DLG4 location.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
InterPro:IPR016313 SUPPORTS TRANSFER
The literal automated condition, mapping or source term was traced; the biological scope is assessed in the reason.
GO:0031697 beta-1 adrenergic receptor binding
ISS
GO_REF:0000024
KEEP AS NON CORE
Summary: Retain beta-1-adrenergic receptor recognition.
Reason: The literal rat donor is experimentally grounded in PMID:11526121, whose abstract explicitly recognizes PSD-95 as a beta1 receptor partner and contrasts its trafficking effect with MAGI-2. Retain this receptor-specific interaction without inferring the behavior of all adrenergic receptors or universal internalization inhibition.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0031748 D1 dopamine receptor binding
ISS
GO_REF:0000024
KEEP AS NON CORE
Summary: Retain D1 dopamine receptor binding and its striatal context.
Reason: The donor original shows reciprocal endogenous D1R/PSD-95 co-immunoprecipitation in monkey striatum, rat-tail peptide pull-down with scrambled control, and receptor-mobility changes after PSD-95 depletion or interface disruption in rat neurons. This supports the receptor class while preserving species and pathological-model scope.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0031812 P2Y1 nucleotide receptor binding
ISS
GO_REF:0000024
KEEP AS NON CORE
Summary: Retain motif-dependent P2Y1 receptor association.
Reason: The actual donor original includes rat cortical reciprocal co-immunoprecipitation and HEK-cell experiments in which replacement or deletion of the P2Y1 C-terminal DTSL motif prevents PSD-95 association and recruitment. Earlier negative isolated-domain screening is explicitly discussed. The controlled cellular evidence supports the source-specific receptor class without claiming purified binary affinity.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0032281 AMPA glutamate receptor complex
IEA
GO_REF:0000107
ACCEPT
Summary: PSD-95 is an organizing component of AMPA-receptor assemblies.
Reason: The current mouse donor records include direct experimental complex annotations. DLG4 organizes AMPA-receptor-associated scaffolds and TARPs, consistent with its receptor-localization function. Complex membership does not imply that DLG4 binds the AMPA pore directly or itself forms an ion channel.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0032281 AMPA glutamate receptor complex
ISS
GO_REF:0000024
ACCEPT
Summary: PSD-95 is an organizing component of AMPA-receptor assemblies.
Reason: The current mouse donor records include direct experimental complex annotations. DLG4 organizes AMPA-receptor-associated scaffolds and TARPs, consistent with its receptor-localization function. Complex membership does not imply that DLG4 binds the AMPA pore directly or itself forms an ion channel.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0032839 dendrite cytoplasm
ISS
GO_REF:0000024
ACCEPT
Summary: Retain the dendritic cytoplasmic scaffold pool.
Reason: The rat donor location is consistent with neuronal dendritic localization and the intracellular postsynaptic-density scaffold. Preserve the dendrite-cytoplasm location without equating all cytoplasm with soluble cytosol.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0033130 acetylcholine receptor binding
ISS
GO_REF:0000024
KEEP AS NON CORE
Summary: Retain alpha7 nicotinic acetylcholine receptor association.
Reason: Original PMID:22593058 detects PSD-95 in alpha7 receptor co-affinity preparations from rat brain, with bead controls, and shows receptor-mobility/cluster-size changes after neuronal PSD-95 knockdown. This supports the curated receptor association; the read assays do not demonstrate a purified binary interface or a general activity for all acetylcholine-receptor classes.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0035176 social behavior
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: Retain the mouse social-behavior phenotype as non-core.
Reason: The literal mouse donor experiment reports altered choice-based social approach and vocalization, while free dyadic social behavior was not significantly changed. Preserve this context-dependent organismal assertion without treating social behavior as a separate direct molecular activity.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0035255 ionotropic glutamate receptor binding
IBA
GO_REF:0000033
ACCEPT
Summary: Ionotropic glutamate-receptor recognition is an established scaffold mechanism.
Reason: The PAINT placement is on the actual target lineage and direct ortholog receptor interactions support the inherited assertion. Target-resolved biochemical and cellular studies independently establish recognition of NMDA-receptor cytoplasmic tails. This denotes receptor binding, not ion-channel activity, glutamate ligand binding or identical affinity for every receptor/product.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
PANTHER:PTN004609043 SUPPORTS TRANSFER
Literal IBD at the Euteleostomi node on the actual human target path. Descendant evidence: MGI:MGI:1277959|RGD:2505|RGD:68424|RGD:68423. The target appearing among descendant sources is not circular evidence.
GO:0035255 ionotropic glutamate receptor binding
IEA
GO_REF:0000107
ACCEPT
Summary: Ionotropic glutamate-receptor recognition is an established scaffold mechanism.
Reason: The PAINT placement is on the actual target lineage and direct ortholog receptor interactions support the inherited assertion. Target-resolved biochemical and cellular studies independently establish recognition of NMDA-receptor cytoplasmic tails. This denotes receptor binding, not ion-channel activity, glutamate ligand binding or identical affinity for every receptor/product.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0035255 ionotropic glutamate receptor binding
ISS
GO_REF:0000024
ACCEPT
Summary: Ionotropic glutamate-receptor recognition is an established scaffold mechanism.
Reason: The PAINT placement is on the actual target lineage and direct ortholog receptor interactions support the inherited assertion. Target-resolved biochemical and cellular studies independently establish recognition of NMDA-receptor cytoplasmic tails. This denotes receptor binding, not ion-channel activity, glutamate ligand binding or identical affinity for every receptor/product.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0035255 ionotropic glutamate receptor binding
ISS
GO_REF:0000024
ACCEPT
Summary: Ionotropic glutamate-receptor recognition is an established scaffold mechanism.
Reason: The PAINT placement is on the actual target lineage and direct ortholog receptor interactions support the inherited assertion. Target-resolved biochemical and cellular studies independently establish recognition of NMDA-receptor cytoplasmic tails. This denotes receptor binding, not ion-channel activity, glutamate ligand binding or identical affinity for every receptor/product.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0035418 protein localization to synapse
IBA
GO_REF:0000033
ACCEPT
Summary: DLG4 helps position multiple proteins at synapses.
Reason: The source original tests assembly and targeting of PSD-95/GKAP/Shank complexes, and independent work shows receptor targeting. Because the cargo includes receptors and other scaffold/signaling proteins, protein localization to synapse remains a useful inclusive process rather than being collapsed to receptors alone. The PAINT target self-source is legitimate experimental grounding; the ARBA conditions also match the official protein.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
PANTHER:PTN000563569 SUPPORTS TRANSFER
Literal IBD at the Bilateria node on the actual human target path. Descendant evidence: RGD:68423|MGI:MGI:1344351|UniProtKB:P78352|MGI:MGI:107231|RGD:68424|MGI:MGI:1277959|RGD:2505. The target appearing among descendant sources is not circular evidence.
GO:0035418 protein localization to synapse
IDA
PMID:15496675
A functional role of postsynaptic density-95-guanylate kinas...
ACCEPT
Summary: DLG4 helps position multiple proteins at synapses.
Reason: The source original tests assembly and targeting of PSD-95/GKAP/Shank complexes, and independent work shows receptor targeting. Because the cargo includes receptors and other scaffold/signaling proteins, protein localization to synapse remains a useful inclusive process rather than being collapsed to receptors alone. The PAINT target self-source is legitimate experimental grounding; the ARBA conditions also match the official protein.
GO:0035418 protein localization to synapse
IEA
GO_REF:0000117
ACCEPT
Summary: DLG4 helps position multiple proteins at synapses.
Reason: The source original tests assembly and targeting of PSD-95/GKAP/Shank complexes, and independent work shows receptor targeting. Because the cargo includes receptors and other scaffold/signaling proteins, protein localization to synapse remains a useful inclusive process rather than being collapsed to receptors alone. The PAINT target self-source is legitimate experimental grounding; the ARBA conditions also match the official protein.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
ARBA:ARBA00090908 SUPPORTS TRANSFER
The literal automated condition, mapping or source term was traced; the biological scope is assessed in the reason.
GO:0035641 locomotory exploration behavior
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: Retain altered exploratory locomotion as a non-core phenotype.
Reason: The actual mouse knockout study reports reduced movement in a novel open field but unchanged homecage activity, with a pharmacological interaction. This is a context-dependent organismal consequence of neuronal scaffold function, not a dedicated motility mechanism.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0035865 cellular response to potassium ion
IEA
GO_REF:0000107
MARK AS OVER ANNOTATED
Summary: The cited potassium-stimulation result measures regulation of PSD-95 abundance.
Reason: Original PMID:26609151 shows PSD-95 loss after high-KCl stimulation, blocked by proteasome inhibition. The significant additional MAP1A-dependent effect concerns PSD-93, not PSD-95. These particular experiments establish regulated PSD-95 degradation without resolving a contribution by DLG4 to the cellular potassium-response process. The process assignment therefore exceeds the specific assay, while the measured change remains valid. This is not a universal rejection of response-term inference from regulated abundance.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: ROLE CONFLATION
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered. The original regulated-degradation observation is valid; its process interpretation is the scoped concern.
Supporting Evidence:
GO:0035865 cellular response to potassium ion
ISS
GO_REF:0000024
MARK AS OVER ANNOTATED
Summary: The cited potassium-stimulation result measures regulation of PSD-95 abundance.
Reason: Original PMID:26609151 shows PSD-95 loss after high-KCl stimulation, blocked by proteasome inhibition. The significant additional MAP1A-dependent effect concerns PSD-93, not PSD-95. These particular experiments establish regulated PSD-95 degradation without resolving a contribution by DLG4 to the cellular potassium-response process. The process assignment therefore exceeds the specific assay, while the measured change remains valid. This is not a universal rejection of response-term inference from regulated abundance.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: ROLE CONFLATION
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered. The original regulated-degradation observation is valid; its process interpretation is the scoped concern.
Supporting Evidence:
GO:0043005 neuron projection
IBA
GO_REF:0000033
MODIFY
Summary: Specify both dendritic and axonal projection locations.
Reason: The ancestral and InterPro neuron-projection mappings are valid. Direct neuronal studies support dendrites, while independent ortholog localization establishes axonal juxtaparanodes and presynaptic basket-cell terminals. Both are retained; predominant postsynaptic localization is not used to erase axonal evidence.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: GRANULARITY MISMATCH
Sources checked:
PANTHER:PTN000563569 SUPPORTS TRANSFER
Literal IBD at the Bilateria node on the actual human target path. Descendant evidence: RGD:68424|RGD:619895|MGI:MGI:1344351|FB:FBgn0001624|RGD:68423|MGI:MGI:107231|RGD:2505|MGI:MGI:1277959. The target appearing among descendant sources is not circular evidence.
Proposed replacements: axon dendrite
GO:0043005 neuron projection
IEA
GO_REF:0000002
MODIFY
Summary: Specify both dendritic and axonal projection locations.
Reason: The ancestral and InterPro neuron-projection mappings are valid. Direct neuronal studies support dendrites, while independent ortholog localization establishes axonal juxtaparanodes and presynaptic basket-cell terminals. Both are retained; predominant postsynaptic localization is not used to erase axonal evidence.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: GRANULARITY MISMATCH
Sources checked:
InterPro:IPR016313 SUPPORTS TRANSFER
The literal automated condition, mapping or source term was traced; the biological scope is assessed in the reason.
Proposed replacements: axon dendrite
GO:0043197 dendritic spine
IEA
GO_REF:0000120
ACCEPT
Summary: Dendritic spines are a major DLG4 scaffold location.
Reason: Direct ortholog imaging and structural perturbation localize PSD-95 to dendritic spines and their postsynaptic densities. The source-specific curated experimental evidence and independent neuronal studies agree; no all-product equivalence or exclusive spine localization is asserted.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0043197 dendritic spine
ISS
GO_REF:0000024
ACCEPT
Summary: Dendritic spines are a major DLG4 scaffold location.
Reason: Direct ortholog imaging and structural perturbation localize PSD-95 to dendritic spines and their postsynaptic densities. The source-specific curated experimental evidence and independent neuronal studies agree; no all-product equivalence or exclusive spine localization is asserted.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0043197 dendritic spine
ISS
GO_REF:0000024
ACCEPT
Summary: Dendritic spines are a major DLG4 scaffold location.
Reason: Direct ortholog imaging and structural perturbation localize PSD-95 to dendritic spines and their postsynaptic densities. The source-specific curated experimental evidence and independent neuronal studies agree; no all-product equivalence or exclusive spine localization is asserted.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0043226 organelle
IEA
GO_REF:0000117
MODIFY
Summary: Replace the very broad organelle mapping with the characterized postsynaptic scaffold location.
Reason: The actual ARBA condition set matches the official DLG4 FunFam assignments. The broad organelle label is less informative than direct localization to the intracellular postsynaptic density; the replacement describes this characterized scaffold compartment without denying separately reviewed trafficking or nonneuronal locations.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: GRANULARITY MISMATCH
Sources checked:
ARBA:ARBA00029065 SUPPORTS TRANSFER
The literal automated condition, mapping or source term was traced; the biological scope is assessed in the reason.
GO:0044224 juxtaparanode region of axon
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: Retain juxtaparanodal axonal localization.
Reason: The actual rat/mouse original directly locates PSD-95 at juxtaparanodes with relevant genetic and antibody controls. This is a distinct axonal scaffold pool. Loss of PSD-95/PSD-93 did not abolish Kv clustering there, so localization is not converted into a claim that DLG4 alone creates the juxtaparanodal channel cluster.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0044224 juxtaparanode region of axon
ISS
GO_REF:0000024
KEEP AS NON CORE
Summary: Retain juxtaparanodal axonal localization.
Reason: The actual rat/mouse original directly locates PSD-95 at juxtaparanodes with relevant genetic and antibody controls. This is a distinct axonal scaffold pool. Loss of PSD-95/PSD-93 did not abolish Kv clustering there, so localization is not converted into a claim that DLG4 alone creates the juxtaparanodal channel cluster.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0044224 juxtaparanode region of axon
ISS
GO_REF:0000024
KEEP AS NON CORE
Summary: Retain juxtaparanodal axonal localization.
Reason: The actual rat/mouse original directly locates PSD-95 at juxtaparanodes with relevant genetic and antibody controls. This is a distinct axonal scaffold pool. Loss of PSD-95/PSD-93 did not abolish Kv clustering there, so localization is not converted into a claim that DLG4 alone creates the juxtaparanodal channel cluster.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0044300 cerebellar mossy fiber
IEA
GO_REF:0000107
UNDECIDED
Summary: The exact cerebellar mossy-fiber assignment remains unresolved.
Reason: The mouse donor assertion is tied to PMID:23791195. The read original uses PSD-95 as a postsynaptic marker in cerebellar-granule-cell studies, but the retrieved passages do not resolve this particular mossy-fiber localization. A broad synaptic marker cannot by itself determine the axonal compartment; retain uncertainty rather than infer a wrong-gene annotation from the title.
Propagation Review
Root cause: UNRESOLVED
Sources checked:
UniProtKB:Q62108 UNRESOLVED
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0044306 neuron projection terminus
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: Retain a projection-terminal scaffold pool.
Reason: The source abstract places PSD-95 immunoreactivity at photoreceptor terminals, consistent with independently demonstrated presynaptic terminal localization. Preserve the inherited terminal context, while keeping the VIAAT localization foregrounded in the source separate from PSD-95 itself.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0044306 neuron projection terminus
ISS
GO_REF:0000024
KEEP AS NON CORE
Summary: Retain a projection-terminal scaffold pool.
Reason: The source abstract places PSD-95 immunoreactivity at photoreceptor terminals, consistent with independently demonstrated presynaptic terminal localization. Preserve the inherited terminal context, while keeping the VIAAT localization foregrounded in the source separate from PSD-95 itself.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0044309 neuron spine
IEA
GO_REF:0000107
MODIFY
Summary: Specify the demonstrated dendritic-spine location.
Reason: The source ortholog studies place PSD-95 in dendritic spines, including its colocalization with Shank3, rather than an unspecified neuron spine. The existing dendritic-spine term captures this evidence without adding a new location or implying that every alternative product was tested.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: GRANULARITY MISMATCH
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
Proposed replacements: dendritic spine
GO:0044309 neuron spine
ISS
GO_REF:0000024
MODIFY
Summary: Specify the demonstrated dendritic-spine location.
Reason: The source ortholog studies place PSD-95 in dendritic spines, including its colocalization with Shank3, rather than an unspecified neuron spine. The existing dendritic-spine term captures this evidence without adding a new location or implying that every alternative product was tested.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: GRANULARITY MISMATCH
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
Proposed replacements: dendritic spine
GO:0044877 protein-containing complex binding
ISS
GO_REF:0000024
KEEP AS NON CORE
Summary: Retain protein-complex binding as a broad supporting association.
Reason: The literal rat donor has several experimental complex-association sources. DLG4 recognizes receptor/scaffold assemblies, but this broad term does not specify which interface or establish direct binding to every constituent. Preserve the valid complex-level assertion separately from the more informative integrated receptor-adaptor function.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0045184 establishment of protein localization
IDA
PMID:15496675
A functional role of postsynaptic density-95-guanylate kinas...
MODIFY
Summary: Specify synaptic protein localization.
Reason: The original studies PSD-95/GKAP/Shank assembly and synaptic targeting. Protein localization to synapse is the directly relevant existing process, more informative than the unrestricted establishment-of-localization parent. The proposed preassembled transport model is not treated as direct measurement of motor-mediated transport.
Proposed replacements: protein localization to synapse
GO:0045197 establishment or maintenance of epithelial cell apical/basal polarity
NAS
PMID:23397623
Polarity protein complex Scribble/Lgl/Dlg and epithelial cel...
UNDECIDED
Summary: A DLG4-specific epithelial apicobasal-polarity role remains unresolved.
Reason: The examined full PMID:23397623 review attributes the operative mammalian polarity and adherens-junction mechanisms to DLG1 and Scribble. Separately, mouse Dlg4 is positively localized at epithelial cell junctions and broadly along plasma membrane, but localization alone does not demonstrate that it establishes apicobasal polarity. This is uncertainty about the specific process, not a blanket denial of epithelial DLG4 function.
GO:0045202 synapse
EXP
PMID:12151521
Postsynaptic targeting of alternative postsynaptic density-9...
MODIFY
Summary: Specify the postsynaptic scaffold while retaining separate presynaptic annotations.
Reason: The source neuronal localization and targeting evidence places DLG4 at postsynaptic specializations, and direct ultrastructure resolves the intracellular postsynaptic density. The refinement applies to the demonstrated synaptic scaffold; other source rows independently preserve presynaptic/axonal contexts and product-dependent trafficking.
GO:0045202 synapse
IDA
PMID:15496675
A functional role of postsynaptic density-95-guanylate kinas...
MODIFY
Summary: Specify the postsynaptic scaffold while retaining separate presynaptic annotations.
Reason: The source neuronal localization and targeting evidence places DLG4 at postsynaptic specializations, and direct ultrastructure resolves the intracellular postsynaptic density. The refinement applies to the demonstrated synaptic scaffold; other source rows independently preserve presynaptic/axonal contexts and product-dependent trafficking.
GO:0045202 synapse
IEA
GO_REF:0000120
MODIFY
Summary: Specify the postsynaptic scaffold while retaining separate presynaptic annotations.
Reason: The source neuronal localization and targeting evidence places DLG4 at postsynaptic specializations, and direct ultrastructure resolves the intracellular postsynaptic density. The refinement applies to the demonstrated synaptic scaffold; other source rows independently preserve presynaptic/axonal contexts and product-dependent trafficking.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: GRANULARITY MISMATCH
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0045211 postsynaptic membrane
IDA
PMID:12151521
Postsynaptic targeting of alternative postsynaptic density-9...
ACCEPT
Summary: Retain postsynaptic-membrane association.
Reason: Direct source localization and ortholog evidence support DLG4 association with the cytoplasmic face of postsynaptic membrane. This is compatible with an intracellular PSD scaffold and does not imply a transmembrane segment or universal alpha-like palmitoylation in the beta product.
GO:0045211 postsynaptic membrane
IEA
GO_REF:0000107
ACCEPT
Summary: Retain postsynaptic-membrane association.
Reason: Direct source localization and ortholog evidence support DLG4 association with the cytoplasmic face of postsynaptic membrane. This is compatible with an intracellular PSD scaffold and does not imply a transmembrane segment or universal alpha-like palmitoylation in the beta product.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0048169 regulation of long-term neuronal synaptic plasticity
ISS
GO_REF:0000024
ACCEPT
Summary: DLG4 regulates long-term synaptic plasticity through receptor-associated scaffolding.
Reason: Curated mouse genetic evidence and the original PSD-95 mutant phenotype demonstrate altered LTP/LTD induction. The scaffold organizes receptor signaling rather than catalyzing potentiation or depression, and its effects depend on synapse and experimental context.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0050806 positive regulation of synaptic transmission
IEA
GO_REF:0000107
ACCEPT
Summary: DLG4 can enhance synaptic transmission through receptor organization.
Reason: The donor annotations have independent experimental grounding and agree with the established ability of PSD-95 scaffolds to target functional AMPA receptors. Retain this direct synaptic regulatory function without asserting that all DLG4 perturbations increase transmission or that the protein releases transmitter.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0050806 positive regulation of synaptic transmission
ISS
GO_REF:0000024
ACCEPT
Summary: DLG4 can enhance synaptic transmission through receptor organization.
Reason: The donor annotations have independent experimental grounding and agree with the established ability of PSD-95 scaffolds to target functional AMPA receptors. Retain this direct synaptic regulatory function without asserting that all DLG4 perturbations increase transmission or that the protein releases transmitter.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0050885 neuromuscular process controlling balance
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: Retain the motor-balance phenotype as non-core.
Reason: The original mouse knockout study directly measures impaired rotarod performance and increased slips on the narrow balance beam, without an obvious gross cerebellar morphological defect. This supports the inherited organismal phenotype, not a dedicated molecular motor activity.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0060076 excitatory synapse
IEA
GO_REF:0000107
ACCEPT
Summary: DLG4 is an excitatory postsynaptic scaffold.
Reason: Direct neuronal localization and receptor-targeting evidence establish excitatory synaptic assemblies. The inherited assertion is consistent with the target mechanism and does not deny other independently documented cellular pools.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0060076 excitatory synapse
ISS
GO_REF:0000024
ACCEPT
Summary: DLG4 is an excitatory postsynaptic scaffold.
Reason: Direct neuronal localization and receptor-targeting evidence establish excitatory synaptic assemblies. The inherited assertion is consistent with the target mechanism and does not deny other independently documented cellular pools.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0060076 excitatory synapse
ISS
GO_REF:0000024
ACCEPT
Summary: DLG4 is an excitatory postsynaptic scaffold.
Reason: Direct neuronal localization and receptor-targeting evidence establish excitatory synaptic assemblies. The inherited assertion is consistent with the target mechanism and does not deny other independently documented cellular pools.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0060292 long-term synaptic depression
ISS
GO_REF:0000024
KEEP AS NON CORE
Summary: Retain long-term synaptic depression as a contextual scaffold-dependent process.
Reason: The rat-derived GO-CAM activity places the receptor adaptor in hippocampal LTD, with source-specific evidence. This is a recognized plasticity context of the same integrated scaffold rather than a distinct enzymatic core or a universal effect across all synapses.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
RGD:68424 SUPPORTS TRANSFER
The literal automated condition, mapping or source term was traced; the biological scope is assessed in the reason.
GO:0060997 dendritic spine morphogenesis
IEA
GO_REF:0000107
ACCEPT
Summary: DLG4 contributes to dendritic-spine organization.
Reason: Direct PSD-95 perturbation changes spine/PSD architecture; the mouse knockout study reports a specific spine-head change in basolateral amygdala without a general density change. Retain scaffold participation in morphogenesis while preserving region and assay dependence.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0060997 dendritic spine morphogenesis
ISS
GO_REF:0000024
ACCEPT
Summary: DLG4 contributes to dendritic-spine organization.
Reason: Direct PSD-95 perturbation changes spine/PSD architecture; the mouse knockout study reports a specific spine-head change in basolateral amygdala without a general density change. Retain scaffold participation in morphogenesis while preserving region and assay dependence.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0060997 dendritic spine morphogenesis
ISS
GO_REF:0000024
ACCEPT
Summary: DLG4 contributes to dendritic-spine organization.
Reason: Direct PSD-95 perturbation changes spine/PSD architecture; the mouse knockout study reports a specific spine-head change in basolateral amygdala without a general density change. Retain scaffold participation in morphogenesis while preserving region and assay dependence.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0065003 protein-containing complex assembly
IDA
PMID:15496675
A functional role of postsynaptic density-95-guanylate kinas...
ACCEPT
Summary: DLG4 assembles postsynaptic scaffold complexes.
Reason: The cited source directly studies PSD-95/GKAP/Shank assembly and domain-dependent targeting. This is structural participation in complex assembly, not merely being detected as a passenger in an unrelated complex; the same mechanism belongs within the integrated adaptor core.
GO:0071625 vocalization behavior
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: Retain the context-dependent vocalization phenotype.
Reason: The actual mouse study measures delayed first vocalization and fewer ultrasonic vocalizations in the tested social context. It supports the inherited organismal effect, without positing a separate vocalization-specific molecular function.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0071944 cell periphery
IEA
GO_REF:0000107
MODIFY
Summary: Specify the established plasma-membrane association.
Reason: The cell-periphery inference is compatible with direct neuronal and epithelial plasma-membrane localization. Plasma membrane is more informative while preserving nonneuronal and presynaptic contexts; no extracellular secretion or transmembrane topology is inferred.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: GRANULARITY MISMATCH
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
Proposed replacements: plasma membrane
GO:0097060 synaptic membrane
IEA
GO_REF:0000120
ACCEPT
Summary: Retain synaptic-membrane association across neuronal contexts.
Reason: The matching ARBA conditions and literal mouse donor are consistent with direct postsynaptic and presynaptic membrane observations. Keeping this inclusive location avoids erasing the photoreceptor and basket-terminal pools when summarizing the predominant postsynaptic function.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0097060 synaptic membrane
ISS
GO_REF:0000024
ACCEPT
Summary: Retain synaptic-membrane association across neuronal contexts.
Reason: The matching ARBA conditions and literal mouse donor are consistent with direct postsynaptic and presynaptic membrane observations. Keeping this inclusive location avoids erasing the photoreceptor and basket-terminal pools when summarizing the predominant postsynaptic function.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0097109 neuroligin family protein binding
ISS
GO_REF:0000024
ACCEPT
Summary: Neuroligin recognition contributes to the synaptic scaffold.
Reason: The literal rat donor source includes a controlled cellular neuroligin-4/PSD-95 association, and the accessible abstract explicitly distinguishes it from a negative ZO-1 comparison. The partner family fits synaptic adhesion/scaffold organization; complex detection is not a purified-affinity measurement.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0097110 scaffold protein binding
IEA
GO_REF:0000107
ACCEPT
Summary: DLG4 recognizes other scaffold proteins in the postsynaptic assembly.
Reason: The inherited scaffold-binding assertion agrees with direct GKAP/SPAR/Preso interactions and postsynaptic complex assembly. These interactions contribute to the same receptor-adaptor organization, not additional enzymatic or independently counted core activities.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0097110 scaffold protein binding
ISS
GO_REF:0000024
ACCEPT
Summary: DLG4 recognizes other scaffold proteins in the postsynaptic assembly.
Reason: The inherited scaffold-binding assertion agrees with direct GKAP/SPAR/Preso interactions and postsynaptic complex assembly. These interactions contribute to the same receptor-adaptor organization, not additional enzymatic or independently counted core activities.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0097113 AMPA glutamate receptor clustering
IBA
GO_REF:0000033
ACCEPT
Summary: DLG4 organizes AMPA receptors into synaptic assemblies.
Reason: PAINT places this function on the actual DLG4-clade ancestor with experimentally grounded rat evidence. Direct PSD-95 perturbation and the receptor-targeting study support AMPA clustering. The source PMID:19914352 foregrounds neuroligin targeting and is not claimed to supply an independently read AMPA panel; the biological assignment has independent grounding.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
PANTHER:PTN002750666 SUPPORTS TRANSFER
Literal IBD at the Euteleostomi node on the actual human target path. Descendant evidence: RGD:68424. The target appearing among descendant sources is not circular evidence.
GO:0097113 AMPA glutamate receptor clustering
ISS
GO_REF:0000024
ACCEPT
Summary: DLG4 organizes AMPA receptors into synaptic assemblies.
Reason: PAINT places this function on the actual DLG4-clade ancestor with experimentally grounded rat evidence. Direct PSD-95 perturbation and the receptor-targeting study support AMPA clustering. The source PMID:19914352 foregrounds neuroligin targeting and is not claimed to supply an independently read AMPA panel; the biological assignment has independent grounding.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0097113 AMPA glutamate receptor clustering
TAS
PMID:19914352
Postsynaptic scaffolding molecules modulate the localization...
ACCEPT
Summary: DLG4 organizes AMPA receptors into synaptic assemblies.
Reason: PAINT places this function on the actual DLG4-clade ancestor with experimentally grounded rat evidence. Direct PSD-95 perturbation and the receptor-targeting study support AMPA clustering. The source PMID:19914352 foregrounds neuroligin targeting and is not claimed to supply an independently read AMPA panel; the biological assignment has independent grounding.
GO:0097120 receptor localization to synapse
IBA
GO_REF:0000033
MODIFY
Summary: Specify neurotransmitter-receptor localization to postsynaptic specializations.
Reason: The inherited receptor-localization role is sound and direct PSD-95/PSD-93 perturbation demonstrates AMPA-receptor targeting at mature synapses. The more specific existing postsynaptic-specialization term captures this activity. Other cargo-localization annotations remain to cover nonreceptor partners; no redundant NEW process is added.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: GRANULARITY MISMATCH
Sources checked:
PANTHER:PTN001136892 SUPPORTS TRANSFER
Literal IBD at the Metazoa-Choanoflagellida node on the actual human target path. Descendant evidence: RGD:68423|MGI:MGI:1344351|RGD:1565055|MGI:MGI:107231|RGD:68424|MGI:MGI:1277959|RGD:2505. The target appearing among descendant sources is not circular evidence.
GO:0097120 receptor localization to synapse
ISS
GO_REF:0000024
MODIFY
Summary: Specify neurotransmitter-receptor localization to postsynaptic specializations.
Reason: The inherited receptor-localization role is sound and direct PSD-95/PSD-93 perturbation demonstrates AMPA-receptor targeting at mature synapses. The more specific existing postsynaptic-specialization term captures this activity. Other cargo-localization annotations remain to cover nonreceptor partners; no redundant NEW process is added.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: GRANULARITY MISMATCH
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0098609 cell-cell adhesion
IBA
GO_REF:0000033
KEEP AS NON CORE
Summary: Retain a non-core ancestral cell-adhesion contribution.
Reason: The actual IBD is placed at PTN001136892, on the human DLG4 lineage, with experimentally grounded DLG1/Scribble sources. DLG4 organizes transsynaptic adhesion-associated assemblies and has an independently documented epithelial cell-junction pool. These observations are compatible with the ancestral scaffold contribution; neither donor count nor lack of a new human adhesion assay refutes placement. Do not transfer the DLG1-specific epithelial polarity mechanism.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
PANTHER:PTN001136892 SUPPORTS TRANSFER
Literal IBD at the Metazoa-Choanoflagellida node on the actual human target path. Descendant evidence: UniProtKB:Q14160|UniProtKB:Q12959. The target appearing among descendant sources is not circular evidence.
GO:0098793 presynapse
IEA
GO_REF:0000044
KEEP AS NON CORE
Summary: Retain directly documented presynaptic localization.
Reason: The rat original directly detects PSD-95 in cerebellar basket-cell presynaptic terminals with antibody controls. Independent photoreceptor work corroborates a presynaptic pool. Predominant forebrain postsynaptic localization therefore does not justify removing the source-specific presynapse assertion.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
UniProtKB-SubCell:SL-0516 SUPPORTS TRANSFER
The literal automated condition, mapping or source term was traced; the biological scope is assessed in the reason.
GO:0098793 presynapse
ISS
GO_REF:0000024
KEEP AS NON CORE
Summary: Retain directly documented presynaptic localization.
Reason: The rat original directly detects PSD-95 in cerebellar basket-cell presynaptic terminals with antibody controls. Independent photoreceptor work corroborates a presynaptic pool. Predominant forebrain postsynaptic localization therefore does not justify removing the source-specific presynapse assertion.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0098794 postsynapse
IEA
GO_REF:0000120
MODIFY
Summary: Specify the intracellular postsynaptic-density scaffold.
Reason: The matching rule and ortholog location are valid but broader than the demonstrated scaffold compartment. Ultrastructural evidence places PSD-95 in the intracellular postsynaptic density; this refinement does not exclude the independently retained presynaptic pools.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: GRANULARITY MISMATCH
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0098839 postsynaptic density membrane
IBA
GO_REF:0000033
ACCEPT
Summary: Retain association with the postsynaptic-density membrane.
Reason: The genuine PAINT placement and direct ortholog membrane/scaffold observations support this location. DLG4 is associated with the intracellular face and protein scaffold, not an integral membrane receptor. The intracellular-PSD core location is compatible with this membrane association.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
PANTHER:PTN000563569 SUPPORTS TRANSFER
Literal IBD at the Bilateria node on the actual human target path. Descendant evidence: RGD:619895|RGD:68424. The target appearing among descendant sources is not circular evidence.
GO:0098919 structural constituent of postsynaptic density
IBA
GO_REF:0000033
ACCEPT
Summary: DLG4 provides structural organization within the postsynaptic density.
Reason: The literal PAINT ancestor and ortholog evidence are experimentally grounded. Direct ultrastructural perturbation demonstrates loss of PSD material and altered vertical-filament organization after PSD-95 depletion. This supports a structural contribution that cooperates with receptor-adaptor activity and is represented explicitly in the complementary structural core.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
PANTHER:PTN008381197 SUPPORTS TRANSFER
Literal IBD at the Craniata-Tunicata node on the actual human target path. Descendant evidence: RGD:68424|MGI:MGI:107231|MGI:MGI:1344351|RGD:68423. The target appearing among descendant sources is not circular evidence.
GO:0098919 structural constituent of postsynaptic density
ISS
GO_REF:0000024
ACCEPT
Summary: DLG4 provides structural organization within the postsynaptic density.
Reason: The literal PAINT ancestor and ortholog evidence are experimentally grounded. Direct ultrastructural perturbation demonstrates loss of PSD material and altered vertical-filament organization after PSD-95 depletion. This supports a structural contribution that cooperates with receptor-adaptor activity and is represented explicitly in the complementary structural core.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
MGI:MGI:1277959 SUPPORTS TRANSFER
The literal automated condition, mapping or source term was traced; the biological scope is assessed in the reason.
GO:0098919 structural constituent of postsynaptic density
ISS
GO_REF:0000024
ACCEPT
Summary: DLG4 provides structural organization within the postsynaptic density.
Reason: The literal PAINT ancestor and ortholog evidence are experimentally grounded. Direct ultrastructural perturbation demonstrates loss of PSD material and altered vertical-filament organization after PSD-95 depletion. This supports a structural contribution that cooperates with receptor-adaptor activity and is represented explicitly in the complementary structural core.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0098978 glutamatergic synapse
IEA
GO_REF:0000107
ACCEPT
Summary: Retain glutamatergic-synapse localization.
Reason: The donor experimental studies and independent AMPA/NMDA receptor-scaffold evidence establish the glutamatergic context. This is a cellular location and does not make DLG4 a glutamate receptor or transmitter-synthesizing enzyme.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0098989 NMDA selective glutamate receptor signaling pathway
ISS
GO_REF:0000024
ACCEPT
Summary: DLG4 participates in NMDA-receptor signaling by physical coupling.
Reason: The rat donor has experimental grounding, and the NMDAR/nitric-oxide study distinguishes downstream signaling effects from unchanged receptor currents and calcium entry. This supports receptor-associated scaffolding rather than channel or nitric-oxide synthase catalysis.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0099072 regulation of postsynaptic membrane neurotransmitter receptor levels
IBA
GO_REF:0000033
ACCEPT
Summary: DLG4 regulates receptor abundance at postsynaptic membrane.
Reason: The genuine ancestral assertion agrees with target-family manipulations that change synaptic AMPA receptor expression. Physical organization and stabilization of receptor-associated assemblies provide participation, not only a downstream behavioral phenotype.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
PANTHER:PTN000563569 SUPPORTS TRANSFER
Literal IBD at the Bilateria node on the actual human target path. Descendant evidence: MGI:MGI:1888986|MGI:MGI:107231|RGD:2505|MGI:MGI:1277959|MGI:MGI:1344351|RGD:68423. The target appearing among descendant sources is not circular evidence.
GO:0099092 postsynaptic density, intracellular component
ISS
GO_REF:0000024
ACCEPT
Summary: The intracellular postsynaptic density is the principal characterized scaffold compartment.
Reason: The rat-derived annotation is directly supported by PSD-95 ultrastructure and perturbation, and the curated human receptor-adaptor model uses the same location. This describes where the integrated core acts without asserting exclusive localization.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
RGD:68424 SUPPORTS TRANSFER
The literal automated condition, mapping or source term was traced; the biological scope is assessed in the reason.
GO:0099562 maintenance of postsynaptic density structure
IEA
GO_REF:0000108
ACCEPT
Summary: DLG4 helps maintain postsynaptic-density structure.
Reason: The electronic inference is grounded in the existing structural-constituent activity. Direct PSD-95 depletion alters PSD material and vertical-filament organization, providing independent support for maintenance rather than an inference based only on protein abundance.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
GO:0098919 SUPPORTS TRANSFER
The literal automated condition, mapping or source term was traced; the biological scope is assessed in the reason.
Supporting Evidence:
PMID:21525273
RNA interference knockdown of PSD-95 leads to loss of entire patches of PSD material
GO:0099645 neurotransmitter receptor localization to postsynaptic specialization membrane
IEA
GO_REF:0000107
ACCEPT
Summary: DLG4 targets neurotransmitter-receptor assemblies to postsynaptic specializations.
Reason: The literal mouse donor has experimental grounding in PMID:17046693. Its accessible abstract explicitly reports PSD-95-dependent AMPA-receptor targeting at mature synapses, while independent structural work supports receptor-associated scaffold organization. This is not a claim that every developmental stage or all natural products behave identically.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:0150012 positive regulation of neuron projection arborization
ISS
GO_REF:0000024
UNDECIDED
Summary: The specific dendritic-arborization mechanism needs the original source experiment.
Reason: The rat donor IGI points to PMID:25424568. Its accessible abstract establishes a Wnt5a/Fzd4 dendrite-growth mechanism, but does not expose the PSD-95 perturbation and interaction required for this exact inference. Full original access was not obtained. Retain uncertainty rather than transferring Fzd4 activity or declaring the curator mistaken from the abstract.
Propagation Review
Root cause: UNRESOLVED
Sources checked:
UniProtKB:P31016 UNRESOLVED
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:1904891 positive regulation of excitatory synapse assembly
IEA
GO_REF:0000107
ACCEPT
Summary: DLG4 contributes to assembly of excitatory postsynaptic structures.
Reason: The curated mouse experimental source and established receptor/scaffold assembly support this inherited process. DLG4 contributes structure and organizes receptor-associated partners, so the claim is more than a nonspecific necessity phenotype. It remains one integrated scaffold function rather than an independently counted catalytic activity.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:1904891 positive regulation of excitatory synapse assembly
ISS
GO_REF:0000024
ACCEPT
Summary: DLG4 contributes to assembly of excitatory postsynaptic structures.
Reason: The curated mouse experimental source and established receptor/scaffold assembly support this inherited process. DLG4 contributes structure and organizes receptor-associated partners, so the claim is more than a nonspecific necessity phenotype. It remains one integrated scaffold function rather than an independently counted catalytic activity.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
MGI:MGI:1277959 SUPPORTS TRANSFER
The literal automated condition, mapping or source term was traced; the biological scope is assessed in the reason.
GO:2000463 positive regulation of excitatory postsynaptic potential
ISS
GO_REF:0000024
ACCEPT
Summary: DLG4 can increase excitatory postsynaptic responses through receptor scaffolding.
Reason: The literal rat source has IDA/IMP grounding in PMID:12930820, consistent with receptor-targeting and synaptic-response studies. Retain the direct synaptic regulatory role without converting it into ion-channel activity or an assertion that every perturbation has the same sign.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
UniProtKB:P31016 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.
GO:2000821 regulation of grooming behavior
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: Retain the context-dependent grooming phenotype as non-core.
Reason: The actual mouse knockout study reports increased grooming in the homecage but not in a novel cage. This supports the inherited organismal effect with its assay context; it is not a separate grooming-specific molecular activity.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
UniProtKB:Q62108 SUPPORTS TRANSFER
The current donor record contains the exact transferred term; literal evidence/reference rows are retained in the source projection. This records donor/source tracing, not a claim that every cited original was recovered.

Core Functions

PSD-95 bridges synaptic receptors and downstream signaling/scaffold proteins through PDZ-mediated receptor recognition and SH3–GK partner recruitment. These contacts organize receptor targeting and signaling at excitatory postsynaptic sites.

Supporting Evidence:
  • PMID:22117215
    The bindings of PSD-95 SH3-GK to DLGAP1 and SPAR are also phosphorylation-dependent
  • PMID:17046693
    PSD-95 and PSD-93 independently mediate AMPA-R targeting at mature synapses.

PSD-95 provides structural elements of the intracellular postsynaptic density that maintain its protein organization and stabilize receptor-associated scaffold assemblies. This architectural role cooperates with its receptor-adaptor activity.

Supporting Evidence:

References

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Suggested Questions for Experts

Q: Which zero-composite or identity-unresolved PDZ fragment pairs can be confirmed with the exact native partner sequence and an independently controlled full-length assay?

Q: What trafficking and interaction properties distinguish the natural 721-residue product from PSD95-alpha and PSD95-beta?

Q: What target-resolved evidence supports the specific endoplasmic-reticulum, synaptic-vesicle, mossy-fiber-rosette and epithelial-polarity assertions that remain uncertain?

πŸ“š Additional Documentation

Notes

(DLG4-notes.md)

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Bioinformatics Results

(RESULTS.md)

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Source Guide

(DLG4-source-guide.md)

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πŸ“„ View Raw YAML

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