DNAJB13 (DnaJ homolog subfamily B member 13; also TSARG3/TSARG6) is an HSP40/J-domain protein that, despite belonging to the co-chaperone family, acts principally as a structural component of the axonemal radial spoke complex. It is a homodimer found in the radial spoke stalk together with RSPH14, DYDC1, ROPN1L and NME5, and is required for the proper formation and function of the ciliary and flagellar axoneme. It localizes to epithelial motile (respiratory) cilia and to the sperm flagellum, where in spermatids it is enriched at the head-tail coupling apparatus and in mature sperm is distributed along the flagellum. Expression is largely restricted to testis and trachea. DNAJB13 supports the motility of sperm and cilia; biallelic loss-of-function variants cause autosomal-recessive primary ciliary dyskinesia (CILD34) with central-complex defects and male infertility.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0006457
protein folding
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Phylogenetic (IBA) transfer of generic HSP40 protein-folding activity from better-characterized DnaJ family members. DNAJB13's experimentally documented role is structural within the axonemal radial spoke, not autonomous folding.
Reason: No direct evidence that DNAJB13 functions as a protein-folding chaperone in vivo; it is a J-domain protein so a residual co-chaperone/folding role is plausible, but it is downstream and non-core relative to its radial-spoke structural function.
Supporting Evidence:
file:human/DNAJB13/DNAJB13-uniprot.txt
Functions as part of axonemal radial spoke complexes that play an important part in the motility of sperm and cilia.
|
|
GO:0051087
protein-folding chaperone binding
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: IBA transfer of chaperone-binding molecular function from the DnaJ family. DNAJB13 has a J domain that could engage HSP70, but no direct chaperone-binding data exist for this protein, whose established interactions are with radial-spoke partners.
Reason: Plausible from the conserved J domain but not experimentally demonstrated for DNAJB13; retained as non-core because the documented function is axonemal-structural.
Supporting Evidence:
file:human/DNAJB13/DNAJB13-uniprot.txt
DnaJ homolog subfamily B member 13
|
|
GO:0005829
cytosol
|
IBA
GO_REF:0000033 |
MARK AS OVER ANNOTATED |
Summary: IBA cytosol localization transferred from family members. DNAJB13's documented site of action is the ciliary/flagellar axoneme (radial spoke), not the bulk cytosol.
Reason: Conflicts with the experimentally established cilium/flagellum localization; cytosolic activity is a family-level inference unsupported for this axonemal protein.
Supporting Evidence:
file:human/DNAJB13/DNAJB13-uniprot.txt
SUBCELLULAR LOCATION: Cell projection, cilium, flagellum
|
|
GO:0006457
protein folding
|
IEA
GO_REF:0000002 |
KEEP AS NON CORE |
Summary: InterPro2GO electronic transfer of protein folding from the HSP40/DnaJ peptide-binding domain signature. Same caveat as the IBA folding term.
Reason: Domain-based prediction; not demonstrated for DNAJB13 whose core role is structural in the radial spoke.
Supporting Evidence:
file:human/DNAJB13/DNAJB13-uniprot.txt
HSP40/DnaJ peptide-binding domain
|
|
GO:0007017
microtubule-based process
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: Generic microtubule-based process, electronically assigned. Consistent with DNAJB13's role in the microtubule-based axoneme but uninformatively broad.
Reason: Consistent with axonemal biology but too general to be a core annotation; more specific terms (cilium movement, flagellated sperm motility) capture the function.
Supporting Evidence:
file:human/DNAJB13/DNAJB13-uniprot.txt
Functions as part of axonemal radial spoke complexes that play an important part in the motility of sperm and cilia.
|
|
GO:0031514
motile cilium
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Electronic localization to motile cilium, redundant with and corroborated by the direct IDA evidence (PMID:27486783).
Reason: Correct localization, independently supported by immunofluorescence in respiratory cilia.
Supporting Evidence:
file:human/DNAJB13/DNAJB13-uniprot.txt
Localizes both to epithelial motile cilium and the sperm flagellum
|
|
GO:0005515
protein binding
|
IPI
PMID:32296183 A reference map of the human binary protein interactome. |
KEEP AS NON CORE |
Summary: High-throughput binary yeast two-hybrid interactome (HuRI) capturing a set of partners (PLK4, TOM1L1, PIBF1, MSS51, ZC3H12A, SEPTIN1, LHX4, RAB3IP, MDFI, GORASP2, PICK1, ZRANB1). The bare protein binding term is uninformative and none of these partners map onto DNAJB13's radial-spoke biology.
Reason: Records real but uninformative high-throughput binary interactions; bare protein binding is not elevated to core per curation guidelines and no specific informative MF is justified by these heterogeneous Y2H hits.
Supporting Evidence:
file:human/DNAJB13/DNAJB13-uniprot.txt
P59910; O00444: PLK4; NbExp=3; IntAct=EBI-11514233, EBI-746202
|
|
GO:0001534
radial spoke
|
IEA
GO_REF:0000107 |
ACCEPT |
Summary: DNAJB13 is a component of the axonemal radial spoke stalk; this is its defining structural localization, supported by orthology, ComplexPortal curation and the Chlamydomonas radial-spoke ortholog.
Reason: Radial spoke membership is the central, well-supported cellular component for DNAJB13.
Supporting Evidence:
file:human/DNAJB13/DNAJB13-uniprot.txt
Component of the axonemal radial
|
|
GO:0005737
cytoplasm
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: Broad cytoplasm localization transferred from the mouse ortholog. Too general; the specific compartment is the ciliary/flagellar axoneme.
Reason: Technically the axoneme is cytoplasmic, but the term is uninformatively broad relative to the documented cilium/flagellum localization.
Supporting Evidence:
file:human/DNAJB13/DNAJB13-uniprot.txt
SUBCELLULAR LOCATION: Cell projection, cilium, flagellum
|
|
GO:0005930
axoneme
|
IEA
GO_REF:0000107 |
ACCEPT |
Summary: Axoneme localization transferred from the mouse ortholog and consistent with radial-spoke membership; the radial spoke attaches to the axonemal doublet microtubules.
Reason: Correct and specific localization for a radial-spoke component.
Supporting Evidence:
file:human/DNAJB13/DNAJB13-uniprot.txt
Component of the axonemal radial
|
|
GO:0036126
sperm flagellum
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Sperm flagellum localization, corroborated by the direct IDA evidence (PMID:27486783).
Reason: Correct localization, independently demonstrated experimentally.
Supporting Evidence:
file:human/DNAJB13/DNAJB13-uniprot.txt
Localizes both to epithelial motile cilium and the sperm flagellum
|
|
GO:0120212
sperm head-tail coupling apparatus
|
IEA
GO_REF:0000107 |
ACCEPT |
Summary: Localization to the sperm head-tail coupling apparatus, where DNAJB13 is rapidly enriched during spermatid elongation (By similarity to mouse).
Reason: Supported by the UniProt subcellular-location note from the mouse ortholog; a genuine sperm sub-compartment localization.
Supporting Evidence:
file:human/DNAJB13/DNAJB13-uniprot.txt
rapidly enriched in the coupling apparatus with the elongation of the spermatid
|
|
GO:0097225
sperm midpiece
|
IDA
GO_REF:0000052 |
ACCEPT |
Summary: HPA immunofluorescence localization to the sperm midpiece, consistent with distribution along the sperm flagellum.
Reason: Direct antibody-based localization consistent with flagellar distribution.
Supporting Evidence:
file:human/DNAJB13/DNAJB13-uniprot.txt
In mature spermatzoa evenly distributed along the flagellum
|
|
GO:0097228
sperm principal piece
|
IDA
GO_REF:0000052 |
ACCEPT |
Summary: HPA immunofluorescence localization to the sperm principal piece, consistent with flagellar distribution.
Reason: Direct antibody-based localization consistent with flagellar distribution.
Supporting Evidence:
file:human/DNAJB13/DNAJB13-uniprot.txt
In mature spermatzoa evenly distributed along the flagellum
|
|
GO:0097229
sperm end piece
|
IDA
GO_REF:0000052 |
ACCEPT |
Summary: HPA immunofluorescence localization to the sperm end piece, consistent with even distribution along the mature sperm flagellum.
Reason: Direct antibody-based localization consistent with flagellar distribution.
Supporting Evidence:
file:human/DNAJB13/DNAJB13-uniprot.txt
In mature spermatzoa evenly distributed along the flagellum
|
|
GO:0001534
radial spoke
|
NAS
PMID:36417862 Differential requirements of IQUB for the assembly of radial... |
ACCEPT |
Summary: ComplexPortal/NAS assignment of DNAJB13 to the radial spoke, based on identification of RS1 components in mammalian sperm flagella.
Reason: Reinforces the core radial-spoke membership with mammalian RS1 compositional data.
Supporting Evidence:
PMID:36417862
this study elucidates the RS1 components and function in mammalian flagella
|
|
GO:0030317
flagellated sperm motility
|
NAS
PMID:36417862 Differential requirements of IQUB for the assembly of radial... |
ACCEPT |
Summary: DNAJB13, as a radial-spoke component, is required for sperm flagellar motility; loss causes male infertility from sperm motility defects.
Reason: Well supported biological-process annotation; radial spoke (RS1) loss abolishes sperm motility and DNAJB13 mutation causes male infertility.
Supporting Evidence:
PMID:36417862
the absence of IQUB only resulted in male infertility, owing to the sperm motility defect
|
|
GO:0036126
sperm flagellum
|
NAS
PMID:36417862 Differential requirements of IQUB for the assembly of radial... |
ACCEPT |
Summary: Sperm flagellum localization (NAS, ComplexPortal), redundant with the direct IDA evidence.
Reason: Correct localization corroborated by experimental IDA.
Supporting Evidence:
file:human/DNAJB13/DNAJB13-uniprot.txt
Localizes both to epithelial motile cilium and the sperm flagellum
|
|
GO:0003341
cilium movement
|
NAS
PMID:36417862 Differential requirements of IQUB for the assembly of radial... |
ACCEPT |
Summary: DNAJB13 participates in cilium movement as a radial-spoke component; radial spokes modulate beat frequency, amplitude and waveform.
Reason: Supported by the radial-spoke role and by the CILD34 motile-cilia phenotype caused by DNAJB13 loss.
Supporting Evidence:
PMID:36417862
It modulates the beat frequency, amplitude, and waveform of the flagella and cilia
|
|
GO:0005929
cilium
|
NAS
PMID:36417862 Differential requirements of IQUB for the assembly of radial... |
ACCEPT |
Summary: Cilium localization (NAS), a broader parent of the specific motile-cilium localization.
Reason: Correct, though less specific than motile cilium; consistent with all evidence.
Supporting Evidence:
file:human/DNAJB13/DNAJB13-uniprot.txt
SUBCELLULAR LOCATION: Cell projection, cilium, flagellum
|
|
GO:0005930
axoneme
|
NAS
PMID:36417862 Differential requirements of IQUB for the assembly of radial... |
ACCEPT |
Summary: Axoneme localization (NAS), redundant with the IEA axoneme annotation and consistent with radial-spoke membership.
Reason: Correct specific localization for a radial-spoke component.
Supporting Evidence:
PMID:36417862
The T-shaped radial spoke (RS) is a protein complex attached to the A microtubule of the outer doublet microtubules
|
|
GO:0097729
9+2 motile cilium
|
NAS
PMID:36417862 Differential requirements of IQUB for the assembly of radial... |
ACCEPT |
Summary: Localization to the 9+2 motile cilium, the axonemal architecture bearing radial spokes and a central pair.
Reason: Correct and specific; radial spokes are a defining feature of the 9+2 motile axoneme.
Supporting Evidence:
PMID:36417862
it extends toward the central pair
|
|
GO:0001534
radial spoke
|
ISS
GO_REF:0000024 |
ACCEPT |
Summary: Sequence/orthology-based assignment of DNAJB13 to the radial spoke (from mouse Q80Y75), consistent with all other radial-spoke evidence.
Reason: Core localization, supported across multiple evidence lines.
Supporting Evidence:
file:human/DNAJB13/DNAJB13-uniprot.txt
Component of the axonemal radial
|
|
GO:0120212
sperm head-tail coupling apparatus
|
ISS
GO_REF:0000024 |
ACCEPT |
Summary: ISS localization to the sperm head-tail coupling apparatus from the mouse ortholog, matching the UniProt note on spermatid enrichment.
Reason: Consistent with the documented spermatid coupling-apparatus enrichment.
Supporting Evidence:
file:human/DNAJB13/DNAJB13-uniprot.txt
Tightly attached to the implantation fossa during the maturation of the spermatid
|
|
GO:0031514
motile cilium
|
IDA
PMID:27486783 Mutations in DNAJB13, Encoding an HSP40 Family Member, Cause... |
ACCEPT |
Summary: Direct immunofluorescence demonstration of DNAJB13 in epithelial motile (respiratory) cilia, lost in the CILD34 patient.
Reason: Strongest evidence localization; directly observed in human respiratory cilia.
Supporting Evidence:
file:human/DNAJB13/DNAJB13-uniprot.txt
Localizes both to epithelial motile cilium and the sperm flagellum
|
|
GO:0036126
sperm flagellum
|
IDA
PMID:27486783 Mutations in DNAJB13, Encoding an HSP40 Family Member, Cause... |
ACCEPT |
Summary: Direct immunofluorescence demonstration of DNAJB13 in the sperm flagellum, absent in the CILD34 patient with the Met278Arg variant.
Reason: Strongest evidence localization; directly observed in human sperm flagella.
Supporting Evidence:
PMID:27486783
the absence of endogenous DNAJB13 in cilia and sperm from this individual
|
|
GO:1904158
axonemal central apparatus assembly
|
IMP
PMID:27486783 Mutations in DNAJB13, Encoding an HSP40 Family Member, Cause... |
ACCEPT |
Summary: Loss of DNAJB13 in PCD patients produces central-complex (central apparatus) defects of the axoneme with normal dynein arms, implicating DNAJB13 in central-apparatus assembly/function.
Reason: Mutant-phenotype evidence; DNAJB13 deficiency causes axonemal central-complex defects, a core consequence of its radial-spoke role.
Supporting Evidence:
PMID:27486783
a PCD phenotype characterized by central complex (CC) defects but normal DA structure
|
Q: Does DNAJB13 retain any HSP70-stimulating co-chaperone activity within the radial spoke (e.g. chaperoning radial-spoke assembly), or is its J domain repurposed purely as a structural/dimerization module?
Q: Which radial-spoke partner interactions are direct, and does the Met278Arg instability act by disrupting incorporation into the assembled spoke?
Experiment: Cryo-EM of the mammalian radial spoke with and without DNAJB13 to define its structural position in the RS1 stalk and the effect of CILD34 variants on spoke architecture.
Experiment: In vitro J-domain functional assay (HSP70 ATPase stimulation) using recombinant DNAJB13 to test whether it has retained or lost canonical co-chaperone activity.
Experiment: Conditional Dnajb13 knockout in mouse multiciliated airway cells and spermatids with high-speed video microscopy to quantify the specific ciliary/flagellar beat defects.
*-deep-research*.md file found in this gene directory.ER proteostasis|Chaperone|HSP70 system|J-domain containing HSP70 cochaperone (branch ER) ; PN-node mapping: type=mapped, scope=ok_for_propagation_to_go, GO:0030544 Hsp70 protein binding (parents no_mapping)J-domain containing HSP70 cochaperone GO:0030544 projection (catalytically-divergent, no HSP70-binding evidence; function is structural radial-spoke). [MAP] Re-examine its ER-branch placement (protein is axonemal, not ER-resident).This file is generated from the current PROTEOSTASIS phase-1 dossier and local gene-review artifacts. Edit the source review, PN mapping, or dossier rather than this generated note when correcting the underlying curation.
id: P59910
gene_symbol: DNAJB13
product_type: PROTEIN
status: COMPLETE
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: DNAJB13 (DnaJ homolog subfamily B member 13; also TSARG3/TSARG6) is an HSP40/J-domain protein that, despite belonging to the co-chaperone family, acts principally as a structural component of the axonemal radial spoke complex. It is a homodimer found in the radial spoke stalk together with RSPH14, DYDC1, ROPN1L and NME5, and is required for the proper formation and function of the ciliary and flagellar axoneme. It localizes to epithelial motile (respiratory) cilia and to the sperm flagellum, where in spermatids it is enriched at the head-tail coupling apparatus and in mature sperm is distributed along the flagellum. Expression is largely restricted to testis and trachea. DNAJB13 supports the motility of sperm and cilia; biallelic loss-of-function variants cause autosomal-recessive primary ciliary dyskinesia (CILD34) with central-complex defects and male infertility.
alternative_products:
- name: '1'
id: P59910-1
- name: 2 (TSARG5)
id: P59910-2
sequence_note: VSP_008519, VSP_008520
existing_annotations:
- term:
id: GO:0006457
label: protein folding
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: Phylogenetic (IBA) transfer of generic HSP40 protein-folding activity from better-characterized DnaJ family members. DNAJB13's experimentally documented role is structural within the axonemal radial spoke, not autonomous folding.
action: KEEP_AS_NON_CORE
reason: No direct evidence that DNAJB13 functions as a protein-folding chaperone in vivo; it is a J-domain protein so a residual co-chaperone/folding role is plausible, but it is downstream and non-core relative to its radial-spoke structural function.
supported_by:
- reference_id: file:human/DNAJB13/DNAJB13-uniprot.txt
supporting_text: Functions as part of axonemal radial spoke complexes that play an important part in the motility of sperm and cilia.
- term:
id: GO:0051087
label: protein-folding chaperone binding
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: IBA transfer of chaperone-binding molecular function from the DnaJ family. DNAJB13 has a J domain that could engage HSP70, but no direct chaperone-binding data exist for this protein, whose established interactions are with radial-spoke partners.
action: KEEP_AS_NON_CORE
reason: Plausible from the conserved J domain but not experimentally demonstrated for DNAJB13; retained as non-core because the documented function is axonemal-structural.
supported_by:
- reference_id: file:human/DNAJB13/DNAJB13-uniprot.txt
supporting_text: DnaJ homolog subfamily B member 13
- term:
id: GO:0005829
label: cytosol
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: IBA cytosol localization transferred from family members. DNAJB13's documented site of action is the ciliary/flagellar axoneme (radial spoke), not the bulk cytosol.
action: MARK_AS_OVER_ANNOTATED
reason: Conflicts with the experimentally established cilium/flagellum localization; cytosolic activity is a family-level inference unsupported for this axonemal protein.
supported_by:
- reference_id: file:human/DNAJB13/DNAJB13-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Cell projection, cilium, flagellum'
- term:
id: GO:0006457
label: protein folding
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: involved_in
review:
summary: InterPro2GO electronic transfer of protein folding from the HSP40/DnaJ peptide-binding domain signature. Same caveat as the IBA folding term.
action: KEEP_AS_NON_CORE
reason: Domain-based prediction; not demonstrated for DNAJB13 whose core role is structural in the radial spoke.
supported_by:
- reference_id: file:human/DNAJB13/DNAJB13-uniprot.txt
supporting_text: HSP40/DnaJ peptide-binding domain
- term:
id: GO:0007017
label: microtubule-based process
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: Generic microtubule-based process, electronically assigned. Consistent with DNAJB13's role in the microtubule-based axoneme but uninformatively broad.
action: KEEP_AS_NON_CORE
reason: Consistent with axonemal biology but too general to be a core annotation; more specific terms (cilium movement, flagellated sperm motility) capture the function.
supported_by:
- reference_id: file:human/DNAJB13/DNAJB13-uniprot.txt
supporting_text: Functions as part of axonemal radial spoke complexes that play an important part in the motility of sperm and cilia.
- term:
id: GO:0031514
label: motile cilium
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: located_in
review:
summary: Electronic localization to motile cilium, redundant with and corroborated by the direct IDA evidence (PMID:27486783).
action: ACCEPT
reason: Correct localization, independently supported by immunofluorescence in respiratory cilia.
supported_by:
- reference_id: file:human/DNAJB13/DNAJB13-uniprot.txt
supporting_text: Localizes both to epithelial motile cilium and the sperm flagellum
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:32296183
qualifier: enables
review:
summary: High-throughput binary yeast two-hybrid interactome (HuRI) capturing a set of partners (PLK4, TOM1L1, PIBF1, MSS51, ZC3H12A, SEPTIN1, LHX4, RAB3IP, MDFI, GORASP2, PICK1, ZRANB1). The bare protein binding term is uninformative and none of these partners map onto DNAJB13's radial-spoke biology.
action: KEEP_AS_NON_CORE
reason: Records real but uninformative high-throughput binary interactions; bare protein binding is not elevated to core per curation guidelines and no specific informative MF is justified by these heterogeneous Y2H hits.
supported_by:
- reference_id: file:human/DNAJB13/DNAJB13-uniprot.txt
supporting_text: 'P59910; O00444: PLK4; NbExp=3; IntAct=EBI-11514233, EBI-746202'
- term:
id: GO:0001534
label: radial spoke
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: part_of
review:
summary: DNAJB13 is a component of the axonemal radial spoke stalk; this is its defining structural localization, supported by orthology, ComplexPortal curation and the Chlamydomonas radial-spoke ortholog.
action: ACCEPT
reason: Radial spoke membership is the central, well-supported cellular component for DNAJB13.
supported_by:
- reference_id: file:human/DNAJB13/DNAJB13-uniprot.txt
supporting_text: Component of the axonemal radial
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: located_in
review:
summary: Broad cytoplasm localization transferred from the mouse ortholog. Too general; the specific compartment is the ciliary/flagellar axoneme.
action: KEEP_AS_NON_CORE
reason: Technically the axoneme is cytoplasmic, but the term is uninformatively broad relative to the documented cilium/flagellum localization.
supported_by:
- reference_id: file:human/DNAJB13/DNAJB13-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Cell projection, cilium, flagellum'
- term:
id: GO:0005930
label: axoneme
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: located_in
review:
summary: Axoneme localization transferred from the mouse ortholog and consistent with radial-spoke membership; the radial spoke attaches to the axonemal doublet microtubules.
action: ACCEPT
reason: Correct and specific localization for a radial-spoke component.
supported_by:
- reference_id: file:human/DNAJB13/DNAJB13-uniprot.txt
supporting_text: Component of the axonemal radial
- term:
id: GO:0036126
label: sperm flagellum
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: located_in
review:
summary: Sperm flagellum localization, corroborated by the direct IDA evidence (PMID:27486783).
action: ACCEPT
reason: Correct localization, independently demonstrated experimentally.
supported_by:
- reference_id: file:human/DNAJB13/DNAJB13-uniprot.txt
supporting_text: Localizes both to epithelial motile cilium and the sperm flagellum
- term:
id: GO:0120212
label: sperm head-tail coupling apparatus
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: located_in
review:
summary: Localization to the sperm head-tail coupling apparatus, where DNAJB13 is rapidly enriched during spermatid elongation (By similarity to mouse).
action: ACCEPT
reason: Supported by the UniProt subcellular-location note from the mouse ortholog; a genuine sperm sub-compartment localization.
supported_by:
- reference_id: file:human/DNAJB13/DNAJB13-uniprot.txt
supporting_text: rapidly enriched in the coupling apparatus with the elongation of the spermatid
- term:
id: GO:0097225
label: sperm midpiece
evidence_type: IDA
original_reference_id: GO_REF:0000052
qualifier: located_in
review:
summary: HPA immunofluorescence localization to the sperm midpiece, consistent with distribution along the sperm flagellum.
action: ACCEPT
reason: Direct antibody-based localization consistent with flagellar distribution.
supported_by:
- reference_id: file:human/DNAJB13/DNAJB13-uniprot.txt
supporting_text: In mature spermatzoa evenly distributed along the flagellum
- term:
id: GO:0097228
label: sperm principal piece
evidence_type: IDA
original_reference_id: GO_REF:0000052
qualifier: located_in
review:
summary: HPA immunofluorescence localization to the sperm principal piece, consistent with flagellar distribution.
action: ACCEPT
reason: Direct antibody-based localization consistent with flagellar distribution.
supported_by:
- reference_id: file:human/DNAJB13/DNAJB13-uniprot.txt
supporting_text: In mature spermatzoa evenly distributed along the flagellum
- term:
id: GO:0097229
label: sperm end piece
evidence_type: IDA
original_reference_id: GO_REF:0000052
qualifier: located_in
review:
summary: HPA immunofluorescence localization to the sperm end piece, consistent with even distribution along the mature sperm flagellum.
action: ACCEPT
reason: Direct antibody-based localization consistent with flagellar distribution.
supported_by:
- reference_id: file:human/DNAJB13/DNAJB13-uniprot.txt
supporting_text: In mature spermatzoa evenly distributed along the flagellum
- term:
id: GO:0001534
label: radial spoke
evidence_type: NAS
original_reference_id: PMID:36417862
qualifier: part_of
review:
summary: ComplexPortal/NAS assignment of DNAJB13 to the radial spoke, based on identification of RS1 components in mammalian sperm flagella.
action: ACCEPT
reason: Reinforces the core radial-spoke membership with mammalian RS1 compositional data.
supported_by:
- reference_id: PMID:36417862
supporting_text: this study elucidates the RS1 components and function in mammalian flagella
- term:
id: GO:0030317
label: flagellated sperm motility
evidence_type: NAS
original_reference_id: PMID:36417862
qualifier: involved_in
review:
summary: DNAJB13, as a radial-spoke component, is required for sperm flagellar motility; loss causes male infertility from sperm motility defects.
action: ACCEPT
reason: Well supported biological-process annotation; radial spoke (RS1) loss abolishes sperm motility and DNAJB13 mutation causes male infertility.
supported_by:
- reference_id: PMID:36417862
supporting_text: the absence of IQUB only resulted in male infertility, owing to the sperm motility defect
- term:
id: GO:0036126
label: sperm flagellum
evidence_type: NAS
original_reference_id: PMID:36417862
qualifier: located_in
review:
summary: Sperm flagellum localization (NAS, ComplexPortal), redundant with the direct IDA evidence.
action: ACCEPT
reason: Correct localization corroborated by experimental IDA.
supported_by:
- reference_id: file:human/DNAJB13/DNAJB13-uniprot.txt
supporting_text: Localizes both to epithelial motile cilium and the sperm flagellum
- term:
id: GO:0003341
label: cilium movement
evidence_type: NAS
original_reference_id: PMID:36417862
qualifier: involved_in
review:
summary: DNAJB13 participates in cilium movement as a radial-spoke component; radial spokes modulate beat frequency, amplitude and waveform.
action: ACCEPT
reason: Supported by the radial-spoke role and by the CILD34 motile-cilia phenotype caused by DNAJB13 loss.
supported_by:
- reference_id: PMID:36417862
supporting_text: It modulates the beat frequency, amplitude, and waveform of the flagella and cilia
- term:
id: GO:0005929
label: cilium
evidence_type: NAS
original_reference_id: PMID:36417862
qualifier: located_in
review:
summary: Cilium localization (NAS), a broader parent of the specific motile-cilium localization.
action: ACCEPT
reason: Correct, though less specific than motile cilium; consistent with all evidence.
supported_by:
- reference_id: file:human/DNAJB13/DNAJB13-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Cell projection, cilium, flagellum'
- term:
id: GO:0005930
label: axoneme
evidence_type: NAS
original_reference_id: PMID:36417862
qualifier: located_in
review:
summary: Axoneme localization (NAS), redundant with the IEA axoneme annotation and consistent with radial-spoke membership.
action: ACCEPT
reason: Correct specific localization for a radial-spoke component.
supported_by:
- reference_id: PMID:36417862
supporting_text: The T-shaped radial spoke (RS) is a protein complex attached to the A microtubule of the outer doublet microtubules
- term:
id: GO:0097729
label: 9+2 motile cilium
evidence_type: NAS
original_reference_id: PMID:36417862
qualifier: located_in
review:
summary: Localization to the 9+2 motile cilium, the axonemal architecture bearing radial spokes and a central pair.
action: ACCEPT
reason: Correct and specific; radial spokes are a defining feature of the 9+2 motile axoneme.
supported_by:
- reference_id: PMID:36417862
supporting_text: it extends toward the central pair
- term:
id: GO:0001534
label: radial spoke
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: part_of
review:
summary: Sequence/orthology-based assignment of DNAJB13 to the radial spoke (from mouse Q80Y75), consistent with all other radial-spoke evidence.
action: ACCEPT
reason: Core localization, supported across multiple evidence lines.
supported_by:
- reference_id: file:human/DNAJB13/DNAJB13-uniprot.txt
supporting_text: Component of the axonemal radial
- term:
id: GO:0120212
label: sperm head-tail coupling apparatus
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: located_in
review:
summary: ISS localization to the sperm head-tail coupling apparatus from the mouse ortholog, matching the UniProt note on spermatid enrichment.
action: ACCEPT
reason: Consistent with the documented spermatid coupling-apparatus enrichment.
supported_by:
- reference_id: file:human/DNAJB13/DNAJB13-uniprot.txt
supporting_text: Tightly attached to the implantation fossa during the maturation of the spermatid
- term:
id: GO:0031514
label: motile cilium
evidence_type: IDA
original_reference_id: PMID:27486783
qualifier: located_in
review:
summary: Direct immunofluorescence demonstration of DNAJB13 in epithelial motile (respiratory) cilia, lost in the CILD34 patient.
action: ACCEPT
reason: Strongest evidence localization; directly observed in human respiratory cilia.
supported_by:
- reference_id: file:human/DNAJB13/DNAJB13-uniprot.txt
supporting_text: Localizes both to epithelial motile cilium and the sperm flagellum
- term:
id: GO:0036126
label: sperm flagellum
evidence_type: IDA
original_reference_id: PMID:27486783
qualifier: located_in
review:
summary: Direct immunofluorescence demonstration of DNAJB13 in the sperm flagellum, absent in the CILD34 patient with the Met278Arg variant.
action: ACCEPT
reason: Strongest evidence localization; directly observed in human sperm flagella.
supported_by:
- reference_id: PMID:27486783
supporting_text: the absence of endogenous DNAJB13 in cilia and sperm from this individual
- term:
id: GO:1904158
label: axonemal central apparatus assembly
evidence_type: IMP
original_reference_id: PMID:27486783
qualifier: involved_in
review:
summary: Loss of DNAJB13 in PCD patients produces central-complex (central apparatus) defects of the axoneme with normal dynein arms, implicating DNAJB13 in central-apparatus assembly/function.
action: ACCEPT
reason: Mutant-phenotype evidence; DNAJB13 deficiency causes axonemal central-complex defects, a core consequence of its radial-spoke role.
supported_by:
- reference_id: PMID:27486783
supporting_text: a PCD phenotype characterized by central complex (CC) defects but normal DA structure
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO terms
findings: []
- id: GO_REF:0000024
title: Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000052
title: Gene Ontology annotation based on curation of immunofluorescence data
findings: []
- id: GO_REF:0000107
title: Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning models
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:27486783
title: Mutations in DNAJB13, Encoding an HSP40 Family Member, Cause Primary Ciliary Dyskinesia and Male Infertility.
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Cached publication title matches PubMed; body confirms biallelic
DNAJB13 mutations cause PCD and male infertility via axonemal/radial-spoke and
sperm flagellar defects, and GOA anchors this PMID to GO:0031514/GO:0036126/GO:1904158
(IDA/IMP), supporting DNAJB13's core cilium/flagellum axoneme role.
findings:
- statement: Biallelic DNAJB13 mutations cause primary ciliary dyskinesia (CILD34) with central-complex defects but normal dynein arms, and male infertility from sperm flagellar dysfunction; DNAJB13 is required for proper formation and function of ciliary and flagellar axonemes.
reference_section_type: ABSTRACT
- statement: The Chlamydomonas ortholog of DNAJB13 localizes to the radial spokes; the p.Met278Arg variant causes protein instability and proteasomal degradation, with loss of endogenous DNAJB13 from cilia and sperm.
reference_section_type: ABSTRACT
- id: PMID:32296183
title: A reference map of the human binary protein interactome.
findings: []
- id: PMID:36417862
title: Differential requirements of IQUB for the assembly of radial spoke 1 and the motility of mouse cilia and flagella.
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Cached publication title matches PubMed; body confirms DNAJB13 is
a radial-spoke-1 stalk component in mammalian sperm flagella. Corroborates the
RS1/cilium-motility role (GOA anchors this PMID as NAS for radial spoke and
sperm flagellum); supporting rather than primary functional evidence.
findings:
- statement: The radial spoke modulates beat frequency, amplitude and waveform of flagella and cilia; RS1 components (including DNAJB13) were identified in mammalian sperm flagella, and loss of RS1 (via Iqub deletion) causes male infertility from sperm motility defects.
reference_section_type: ABSTRACT
- id: file:human/DNAJB13/DNAJB13-uniprot.txt
title: UniProt entry P59910 (DJB13_HUMAN), DnaJ homolog subfamily B member 13
findings:
- statement: Functions as part of axonemal radial spoke complexes important for sperm and cilia motility; homodimer; component of radial spoke complex 1 (RS1) spoke stalk; localizes to motile cilium and sperm flagellum.
reference_section_type: OTHER
core_functions:
- description: Structural component of the axonemal radial spoke (RS1 stalk) required for assembly and function of the ciliary/flagellar central apparatus and thereby for motility of sperm flagella and respiratory motile cilia.
molecular_function:
id: GO:0030674
label: protein-macromolecule adaptor activity
in_complex:
id: GO:0001534
label: radial spoke
locations:
- id: GO:0005930
label: axoneme
supported_by:
- reference_id: file:human/DNAJB13/DNAJB13-uniprot.txt
supporting_text: Functions as part of axonemal radial spoke complexes that play an important part in the motility of sperm and cilia.
- reference_id: PMID:27486783
supporting_text: a PCD phenotype characterized by central complex (CC) defects but normal DA structure
- description: Participates in cilium and flagellated sperm movement as part of the radial-spoke mechanochemical signal-transduction apparatus that regulates axonemal beat.
molecular_function:
id: GO:0030674
label: protein-macromolecule adaptor activity
locations:
- id: GO:0097729
label: 9+2 motile cilium
supported_by:
- reference_id: PMID:36417862
supporting_text: It modulates the beat frequency, amplitude, and waveform of the flagella and cilia
directly_involved_in:
- id: GO:0003341
label: cilium movement
proposed_new_terms: []
suggested_questions:
- question: Does DNAJB13 retain any HSP70-stimulating co-chaperone activity within the radial spoke (e.g. chaperoning radial-spoke assembly), or is its J domain repurposed purely as a structural/dimerization module?
- question: Which radial-spoke partner interactions are direct, and does the Met278Arg instability act by disrupting incorporation into the assembled spoke?
suggested_experiments:
- description: Cryo-EM of the mammalian radial spoke with and without DNAJB13 to define its structural position in the RS1 stalk and the effect of CILD34 variants on spoke architecture.
- description: In vitro J-domain functional assay (HSP70 ATPase stimulation) using recombinant DNAJB13 to test whether it has retained or lost canonical co-chaperone activity.
- description: Conditional Dnajb13 knockout in mouse multiciliated airway cells and spermatids with high-speed video microscopy to quantify the specific ciliary/flagellar beat defects.