EMC1

UniProt ID: Q8N766
Organism: Homo sapiens
Review Status: COMPLETE
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Gene Description

EMC1 (ER membrane protein complex subunit 1) is the large lumenal scaffold subunit of the endoplasmic reticulum membrane protein complex (EMC), a conserved nine- to ten-subunit transmembrane-domain insertase and chaperone of the ER. The 993-residue protein has a cleaved N-terminal signal peptide, an extensive lumenal region (~residues 23-962) that folds into a GOLD-like/WD40-YVTN beta-propeller, a single C-terminal transmembrane helix, and a short cytoplasmic tail, making it a single-pass type I membrane protein. As part of the EMC it enables the energy-independent insertion of newly synthesized membrane proteins into the ER membrane, with a preference for transmembrane domains that are weakly hydrophobic or carry destabilizing charged or aromatic residues. The complex inserts tail-anchored proteins post-translationally and inserts the first transmembrane domains of multipass proteins such as G protein-coupled receptors co-translationally, setting their N-exo topology in cooperation with the Sec61 translocon. The catalytic insertion vestibule of the complex is formed by the EMC3 and EMC6 subunits; EMC1 itself is non-catalytic and serves as a lumenal structural scaffold and assembly platform. EMC1 is broadly expressed and resides in the ER membrane, and biallelic or monoallelic variants cause CAVIPMR (cerebellar atrophy, visual impairment, and psychomotor retardation), an autosomal recessive neurodegenerative disorder.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0072546 EMC complex
IBA
GO_REF:0000033
ACCEPT
Summary: EMC1 is a constitutive subunit of the ER membrane protein complex (EMC); the phylogenetic (IBA) assignment of EMC complex membership matches the experimentally demonstrated composition and is a core localization/complex annotation.
Reason: Core complex membership; EMC1 is the large lumenal scaffold subunit of the EMC, supported experimentally and conserved across the EMC1 family.
Supporting Evidence:
file:human/EMC1/EMC1-uniprot.txt
Component of the ER membrane protein complex (EMC).
GO:0005789 endoplasmic reticulum membrane
IEA
GO_REF:0000044
ACCEPT
Summary: Electronic transfer of the UniProt subcellular location to ER membrane, consistent with direct experimental localization evidence.
Reason: Correct compartment; EMC1 is an ER membrane protein, redundant with IDA evidence.
Supporting Evidence:
file:human/EMC1/EMC1-uniprot.txt
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
GO:0072546 EMC complex
IEA
GO_REF:0000002
ACCEPT
Summary: InterPro-based electronic assignment of EMC complex membership, consistent with the experimental IDA/IBA annotations.
Reason: Correct; EMC1 is a defining EMC subunit, redundant with stronger evidence.
Supporting Evidence:
file:human/EMC1/EMC1-uniprot.txt
Component of the ER membrane protein complex (EMC).
GO:0005515 protein binding
IPI
PMID:32353859
A SARS-CoV-2 protein interaction map reveals targets for dru...
KEEP AS NON CORE
Summary: High-throughput SARS-CoV-2 affinity-purification interactome capturing an interaction between EMC1 and the viral ORF8 protein (P0DTC8). The bare protein binding term is uninformative and the partner is a viral xenobiotic protein, not a core EMC functional interaction.
Reason: Records a real virus-host interactome capture (EMC1 with SARS-CoV-2 ORF8) but bare protein binding is uninformative and the partner does not reflect EMC1's core ER-insertase scaffolding role; not elevated to core.
Supporting Evidence:
file:human/EMC1/EMC1-uniprot.txt
Q8N766; P0DTC8: 8; Xeno; NbExp=3; IntAct=EBI-1044442, EBI-25475900;
GO:0005515 protein binding
IPI
PMID:33060197
Comparative host-coronavirus protein interaction networks re...
KEEP AS NON CORE
Summary: Comparative coronavirus host-interactome screen capturing the EMC1-SARS-CoV-2 ORF8 (P0DTC8) interaction. Bare protein binding is uninformative and the partner is a viral protein unrelated to EMC1's core function.
Reason: Real virus-host interactome capture but bare protein binding is uninformative; the viral partner does not inform EMC1's core ER membrane-insertase scaffolding role.
Supporting Evidence:
file:human/EMC1/EMC1-uniprot.txt
Q8N766; P0DTC8: 8; Xeno; NbExp=3; IntAct=EBI-1044442, EBI-25475900;
GO:0005515 protein binding
IPI
PMID:36217030
A comprehensive SARS-CoV-2-human protein-protein interactome...
KEEP AS NON CORE
Summary: Comprehensive SARS-CoV-2-human protein-protein interactome capturing the EMC1-ORF8 (P0DTC8) interaction. Bare protein binding is uninformative and the partner is a viral protein.
Reason: Real virus-host interactome capture; bare protein binding is uninformative and the viral partner is not part of EMC1's core insertase scaffolding function.
Supporting Evidence:
file:human/EMC1/EMC1-uniprot.txt
Q8N766; P0DTC8: 8; Xeno; NbExp=3; IntAct=EBI-1044442, EBI-25475900;
GO:0005783 endoplasmic reticulum
IEA
GO_REF:0000120
ACCEPT
Summary: Electronic assignment of the parent endoplasmic reticulum compartment, consistent with the more specific ER membrane localization that is experimentally supported.
Reason: Correct compartment; EMC1 is an ER membrane protein, so the parent ER term is accurate, though GO:0005789 (ER membrane) is more informative.
Supporting Evidence:
file:human/EMC1/EMC1-uniprot.txt
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
GO:0005789 endoplasmic reticulum membrane
NAS
PMID:29242231
The ER membrane protein complex is a transmembrane domain in...
ACCEPT
Summary: ComplexPortal NAS annotation of EMC1 ER membrane localization, consistent with the direct experimental (IDA) evidence and the UniProt subcellular location.
Reason: Correct compartment; EMC1 resides in the ER membrane as part of the EMC, redundant with IDA evidence.
Supporting Evidence:
file:human/EMC1/EMC1-uniprot.txt
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
GO:0045050 protein insertion into ER membrane by stop-transfer membrane-anchor sequence
IDA
PMID:29242231
The ER membrane protein complex is a transmembrane domain in...
ACCEPT
Summary: As a subunit of the EMC, EMC1 participates in the insertion of transmembrane segments (including stop-transfer/membrane-anchor sequences) into the ER membrane. This is a complex-level contribution reflecting EMC1's membership in the insertase complex.
Reason: Correct complex-level process annotation (involved_in); the EMC is a demonstrated transmembrane-domain insertase and EMC1 is a constitutive subunit. EMC1 itself is the non-catalytic lumenal scaffold but the process is correctly attributed to the complex.
Supporting Evidence:
PMID:29242231
EMC is a transmembrane domain insertase
file:human/EMC1/EMC1-uniprot.txt
stop-transfer membrane-anchor sequences become ER membrane spanning
GO:0071816 tail-anchored membrane protein insertion into ER membrane
IDA
PMID:29242231
The ER membrane protein complex is a transmembrane domain in...
ACCEPT
Summary: As a constitutive EMC subunit, EMC1 participates in the post-translational insertion of tail-anchored proteins into the ER membrane, a directly demonstrated EMC activity. This is a core complex-level process annotation; EMC1 itself is the non-catalytic lumenal scaffold.
Reason: Core EMC-mediated process; the EMC is a demonstrated transmembrane-domain insertase that inserts tail-anchored proteins, and EMC1 is a defining subunit.
Supporting Evidence:
PMID:29242231
EMC is a transmembrane domain insertase
file:human/EMC1/EMC1-uniprot.txt
post-translational insertion of tail-anchored/TA proteins in
GO:0072546 EMC complex
IPI
PMID:32439656
Structural basis for membrane insertion by the human ER memb...
ACCEPT
Summary: ComplexPortal IPI assignment of EMC complex membership based on the cryo-EM structure of the human EMC. Core structural identity of EMC1 as the large lumenal scaffold subunit.
Reason: Structurally demonstrated core EMC membership.
Supporting Evidence:
file:human/EMC1/EMC1-uniprot.txt
Component of the ER membrane protein complex (EMC).
GO:0032977 membrane insertase activity
IMP
PMID:29809151
The ER membrane protein complex interacts cotranslationally ...
ACCEPT
Summary: IMP evidence (cotranslational multipass biogenesis study) that the EMC has membrane insertase activity, to which EMC1 contributes as a subunit. The contributes_to qualifier is appropriate because the catalytic insertion vestibule is formed by EMC3 and EMC6, while EMC1 is the non-catalytic lumenal scaffold that supports complex function.
Reason: Correct complex-level MF with contributes_to qualifier; EMC1 supports the insertase activity of the whole complex though it is not itself catalytic.
Supporting Evidence:
PMID:32439656
occurs via an enclosed hydrophilic
file:human/EMC1/EMC1-uniprot.txt
enables the energy-independent insertion into endoplasmic
GO:0032977 membrane insertase activity
IMP
PMID:30415835
EMC Is Required to Initiate Accurate Membrane Protein Topoge...
ACCEPT
Summary: IMP evidence (topogenesis study) supporting the EMC's membrane insertase activity, to which EMC1 contributes as the lumenal scaffold subunit. The contributes_to qualifier correctly reflects that EMC1 is non-catalytic while the complex performs the insertion.
Reason: Correct complex-level MF with contributes_to qualifier; EMC1 supports the insertase activity of the EMC.
Supporting Evidence:
file:human/EMC1/EMC1-uniprot.txt
enables the energy-independent insertion into endoplasmic
GO:0045050 protein insertion into ER membrane by stop-transfer membrane-anchor sequence
IMP
PMID:29809151
The ER membrane protein complex interacts cotranslationally ...
ACCEPT
Summary: The EMC is required for cotranslational insertion of multipass membrane proteins in which stop-transfer membrane-anchor sequences become ER membrane-spanning helices; EMC1 is a constitutive subunit of this insertase. Core EMC process.
Reason: Core EMC-mediated process; supported by IMP of EMC subunits in the cotranslational multipass biogenesis study.
Supporting Evidence:
file:human/EMC1/EMC1-uniprot.txt
stop-transfer membrane-anchor sequences become ER membrane spanning
GO:0005789 endoplasmic reticulum membrane
IDA
PMID:22119785
Defining human ERAD networks through an integrative mapping ...
ACCEPT
Summary: Direct experimental ER membrane localization from the foundational ERAD-network mapping study that first identified the EMC. Core compartment for EMC1.
Reason: Experimentally supported core location.
Supporting Evidence:
file:human/EMC1/EMC1-uniprot.txt
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
GO:0005789 endoplasmic reticulum membrane
IDA
PMID:32439656
Structural basis for membrane insertion by the human ER memb...
ACCEPT
Summary: Direct (cryo-EM structural) evidence placing EMC1 in the ER membrane as a single-pass type I membrane subunit of the EMC. Core compartment.
Reason: Experimentally supported core location.
Supporting Evidence:
file:human/EMC1/EMC1-uniprot.txt
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
GO:0045050 protein insertion into ER membrane by stop-transfer membrane-anchor sequence
IMP
PMID:30415835
EMC Is Required to Initiate Accurate Membrane Protein Topoge...
ACCEPT
Summary: IMP evidence (topogenesis study) that the EMC inserts stop-transfer membrane-anchor sequences and sets the N-exo topology of multipass clients such as GPCRs; EMC1 is part of the insertase. Core EMC process.
Reason: Core EMC-mediated process.
Supporting Evidence:
file:human/EMC1/EMC1-uniprot.txt
stop-transfer membrane-anchor sequences become ER membrane spanning
GO:0032991 protein-containing complex
IDA
PMID:28246125
ZMPSTE24 defends against influenza and other pathogenic viru...
KEEP AS NON CORE
Summary: MGI IDA assignment of generic protein-containing complex membership, derived from the ZMPSTE24/IFITM antiviral study in which EMC1 appears as a co-purifying complex component. This is a generic parent of the specific EMC complex term and is uninformative on its own.
Reason: Correct but generic (a parent of GO:0072546 EMC complex); the EMC complex term captures the informative complex membership. Per guidelines an experimental IDA is retained, not removed.
Supporting Evidence:
file:human/EMC1/EMC1-uniprot.txt
Component of the ER membrane protein complex (EMC).
GO:0016020 membrane
IDA
PMID:22119785
Defining human ERAD networks through an integrative mapping ...
KEEP AS NON CORE
Summary: Direct generic membrane localization from the EMC-discovery study; a parent of the specific ER membrane term.
Reason: Correct but generic; the ER membrane term captures the informative localization.
Supporting Evidence:
file:human/EMC1/EMC1-uniprot.txt
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
GO:0072546 EMC complex
IDA
PMID:22119785
Defining human ERAD networks through an integrative mapping ...
ACCEPT
Summary: Direct experimental identification of EMC1 in the EMC by the foundational ERAD-network mapping study. Core structural identity of EMC1 as the large lumenal scaffold subunit.
Reason: Core EMC membership; directly demonstrated.
Supporting Evidence:
file:human/EMC1/EMC1-uniprot.txt
Component of the ER membrane protein complex (EMC).

Core Functions

Constitutive large lumenal scaffold subunit of the ER membrane protein complex (EMC); EMC1 contributes to the complex's energy-independent membrane insertase activity that inserts transmembrane domains into the ER membrane, though the catalytic vestibule is formed by EMC3 and EMC6.

Molecular Function:
membrane insertase activity
In Complex:
EMC complex
Supporting Evidence:
  • file:human/EMC1/EMC1-uniprot.txt
    enables the energy-independent insertion into endoplasmic
  • PMID:32439656
    occurs via an enclosed hydrophilic

As part of the EMC, contributes to post-translational insertion of tail-anchored proteins and cotranslational insertion and N-exo topogenesis of multipass membrane proteins (including GPCRs) at the ER membrane.

Supporting Evidence:
  • file:human/EMC1/EMC1-uniprot.txt
    post-translational insertion of tail-anchored/TA proteins in

Within the EMC, EMC1 engages client transmembrane domains in a chaperone/holdase mode that is distinct from the EMC3/EMC6 insertase vestibule; EMC1 modulates client TMD orientation in the bilayer and stabilizes partially assembled membrane-protein complexes (e.g. CaV channel assembly intermediates).

Supporting Evidence:
  • PMID:40753078
    the EMC engages TMDs via its EMC1 subunit and modulates their orientation within the lipid bilayer
  • PMID:37196677
    EMC functions as a channel holdase that facilitates channel assembly

References

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Suggested Questions for Experts

Q: How do CAVIPMR-causing variants in the EMC1 lumenal beta-propeller (e.g. T82M, G868R) impair EMC assembly or client insertion, and why is the nervous system particularly vulnerable?

Q: Does the EMC1 lumenal scaffold confer client selectivity, or does it act purely structurally to position the EMC3/EMC6 catalytic core?

Suggested Experiments

Experiment: Reconstitute the human EMC lacking EMC1 (or carrying CAVIPMR variants) in proteoliposomes and measure insertion of tail-anchored and multipass substrates to define EMC1's structural contribution to insertase activity.

Experiment: Perform quantitative membrane proteomics in EMC1-knockout versus rescued neuronal cells to identify the EMC1-dependent client repertoire underlying CAVIPMR neurodegeneration.

Deep Research

Falcon

(EMC1-deep-research-falcon.md)

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πŸ“š Additional Documentation

Notes

(EMC1-notes.md)

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Pn Notes

(EMC1-pn-notes.md)

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