EMC1 (ER membrane protein complex subunit 1) is the large lumenal scaffold subunit of the endoplasmic reticulum membrane protein complex (EMC), a conserved nine- to ten-subunit transmembrane-domain insertase and chaperone of the ER. The 993-residue protein has a cleaved N-terminal signal peptide, an extensive lumenal region (~residues 23-962) that folds into a GOLD-like/WD40-YVTN beta-propeller, a single C-terminal transmembrane helix, and a short cytoplasmic tail, making it a single-pass type I membrane protein. As part of the EMC it enables the energy-independent insertion of newly synthesized membrane proteins into the ER membrane, with a preference for transmembrane domains that are weakly hydrophobic or carry destabilizing charged or aromatic residues. The complex inserts tail-anchored proteins post-translationally and inserts the first transmembrane domains of multipass proteins such as G protein-coupled receptors co-translationally, setting their N-exo topology in cooperation with the Sec61 translocon. The catalytic insertion vestibule of the complex is formed by the EMC3 and EMC6 subunits; EMC1 itself is non-catalytic and serves as a lumenal structural scaffold and assembly platform. EMC1 is broadly expressed and resides in the ER membrane, and biallelic or monoallelic variants cause CAVIPMR (cerebellar atrophy, visual impairment, and psychomotor retardation), an autosomal recessive neurodegenerative disorder.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
| GO:0072546 EMC complex | IBA GO_REF:0000033 | ACCEPT | Summary: EMC1 is a constitutive subunit of the ER membrane protein complex (EMC); the phylogenetic (IBA) assignment of EMC complex membership matches the experimentally demonstrated composition and is a core localization/complex annotation. Reason: Core complex membership; EMC1 is the large lumenal scaffold subunit of the EMC, supported experimentally and conserved across the EMC1 family. Supporting Evidence: file:human/EMC1/EMC1-uniprot.txt Component of the ER membrane protein complex (EMC). |
| GO:0005789 endoplasmic reticulum membrane | IEA GO_REF:0000044 | ACCEPT | Summary: Electronic transfer of the UniProt subcellular location to ER membrane, consistent with direct experimental localization evidence. Reason: Correct compartment; EMC1 is an ER membrane protein, redundant with IDA evidence. Supporting Evidence: file:human/EMC1/EMC1-uniprot.txt SUBCELLULAR LOCATION: Endoplasmic reticulum membrane |
| GO:0072546 EMC complex | IEA GO_REF:0000002 | ACCEPT | Summary: InterPro-based electronic assignment of EMC complex membership, consistent with the experimental IDA/IBA annotations. Reason: Correct; EMC1 is a defining EMC subunit, redundant with stronger evidence. Supporting Evidence: file:human/EMC1/EMC1-uniprot.txt Component of the ER membrane protein complex (EMC). |
| GO:0005515 protein binding | IPI PMID:32353859 A SARS-CoV-2 protein interaction map reveals targets for dru... | KEEP AS NON CORE | Summary: High-throughput SARS-CoV-2 affinity-purification interactome capturing an interaction between EMC1 and the viral ORF8 protein (P0DTC8). The bare protein binding term is uninformative and the partner is a viral xenobiotic protein, not a core EMC functional interaction. Reason: Records a real virus-host interactome capture (EMC1 with SARS-CoV-2 ORF8) but bare protein binding is uninformative and the partner does not reflect EMC1's core ER-insertase scaffolding role; not elevated to core. Supporting Evidence: file:human/EMC1/EMC1-uniprot.txt Q8N766; P0DTC8: 8; Xeno; NbExp=3; IntAct=EBI-1044442, EBI-25475900; |
| GO:0005515 protein binding | IPI PMID:33060197 Comparative host-coronavirus protein interaction networks re... | KEEP AS NON CORE | Summary: Comparative coronavirus host-interactome screen capturing the EMC1-SARS-CoV-2 ORF8 (P0DTC8) interaction. Bare protein binding is uninformative and the partner is a viral protein unrelated to EMC1's core function. Reason: Real virus-host interactome capture but bare protein binding is uninformative; the viral partner does not inform EMC1's core ER membrane-insertase scaffolding role. Supporting Evidence: file:human/EMC1/EMC1-uniprot.txt Q8N766; P0DTC8: 8; Xeno; NbExp=3; IntAct=EBI-1044442, EBI-25475900; |
| GO:0005515 protein binding | IPI PMID:36217030 A comprehensive SARS-CoV-2-human protein-protein interactome... | KEEP AS NON CORE | Summary: Comprehensive SARS-CoV-2-human protein-protein interactome capturing the EMC1-ORF8 (P0DTC8) interaction. Bare protein binding is uninformative and the partner is a viral protein. Reason: Real virus-host interactome capture; bare protein binding is uninformative and the viral partner is not part of EMC1's core insertase scaffolding function. Supporting Evidence: file:human/EMC1/EMC1-uniprot.txt Q8N766; P0DTC8: 8; Xeno; NbExp=3; IntAct=EBI-1044442, EBI-25475900; |
| GO:0005783 endoplasmic reticulum | IEA GO_REF:0000120 | ACCEPT | Summary: Electronic assignment of the parent endoplasmic reticulum compartment, consistent with the more specific ER membrane localization that is experimentally supported. Reason: Correct compartment; EMC1 is an ER membrane protein, so the parent ER term is accurate, though GO:0005789 (ER membrane) is more informative. Supporting Evidence: file:human/EMC1/EMC1-uniprot.txt SUBCELLULAR LOCATION: Endoplasmic reticulum membrane |
| GO:0005789 endoplasmic reticulum membrane | NAS PMID:29242231 The ER membrane protein complex is a transmembrane domain in... | ACCEPT | Summary: ComplexPortal NAS annotation of EMC1 ER membrane localization, consistent with the direct experimental (IDA) evidence and the UniProt subcellular location. Reason: Correct compartment; EMC1 resides in the ER membrane as part of the EMC, redundant with IDA evidence. Supporting Evidence: file:human/EMC1/EMC1-uniprot.txt SUBCELLULAR LOCATION: Endoplasmic reticulum membrane |
| GO:0045050 protein insertion into ER membrane by stop-transfer membrane-anchor sequence | IDA PMID:29242231 The ER membrane protein complex is a transmembrane domain in... | ACCEPT | Summary: As a subunit of the EMC, EMC1 participates in the insertion of transmembrane segments (including stop-transfer/membrane-anchor sequences) into the ER membrane. This is a complex-level contribution reflecting EMC1's membership in the insertase complex. Reason: Correct complex-level process annotation (involved_in); the EMC is a demonstrated transmembrane-domain insertase and EMC1 is a constitutive subunit. EMC1 itself is the non-catalytic lumenal scaffold but the process is correctly attributed to the complex. Supporting Evidence: PMID:29242231 EMC is a transmembrane domain insertase file:human/EMC1/EMC1-uniprot.txt stop-transfer membrane-anchor sequences become ER membrane spanning |
| GO:0071816 tail-anchored membrane protein insertion into ER membrane | IDA PMID:29242231 The ER membrane protein complex is a transmembrane domain in... | ACCEPT | Summary: As a constitutive EMC subunit, EMC1 participates in the post-translational insertion of tail-anchored proteins into the ER membrane, a directly demonstrated EMC activity. This is a core complex-level process annotation; EMC1 itself is the non-catalytic lumenal scaffold. Reason: Core EMC-mediated process; the EMC is a demonstrated transmembrane-domain insertase that inserts tail-anchored proteins, and EMC1 is a defining subunit. Supporting Evidence: PMID:29242231 EMC is a transmembrane domain insertase file:human/EMC1/EMC1-uniprot.txt post-translational insertion of tail-anchored/TA proteins in |
| GO:0072546 EMC complex | IPI PMID:32439656 Structural basis for membrane insertion by the human ER memb... | ACCEPT | Summary: ComplexPortal IPI assignment of EMC complex membership based on the cryo-EM structure of the human EMC. Core structural identity of EMC1 as the large lumenal scaffold subunit. Reason: Structurally demonstrated core EMC membership. Supporting Evidence: file:human/EMC1/EMC1-uniprot.txt Component of the ER membrane protein complex (EMC). |
| GO:0032977 membrane insertase activity | IMP PMID:29809151 The ER membrane protein complex interacts cotranslationally ... | ACCEPT | Summary: IMP evidence (cotranslational multipass biogenesis study) that the EMC has membrane insertase activity, to which EMC1 contributes as a subunit. The contributes_to qualifier is appropriate because the catalytic insertion vestibule is formed by EMC3 and EMC6, while EMC1 is the non-catalytic lumenal scaffold that supports complex function. Reason: Correct complex-level MF with contributes_to qualifier; EMC1 supports the insertase activity of the whole complex though it is not itself catalytic. Supporting Evidence: PMID:32439656 occurs via an enclosed hydrophilic file:human/EMC1/EMC1-uniprot.txt enables the energy-independent insertion into endoplasmic |
| GO:0032977 membrane insertase activity | IMP PMID:30415835 EMC Is Required to Initiate Accurate Membrane Protein Topoge... | ACCEPT | Summary: IMP evidence (topogenesis study) supporting the EMC's membrane insertase activity, to which EMC1 contributes as the lumenal scaffold subunit. The contributes_to qualifier correctly reflects that EMC1 is non-catalytic while the complex performs the insertion. Reason: Correct complex-level MF with contributes_to qualifier; EMC1 supports the insertase activity of the EMC. Supporting Evidence: file:human/EMC1/EMC1-uniprot.txt enables the energy-independent insertion into endoplasmic |
| GO:0045050 protein insertion into ER membrane by stop-transfer membrane-anchor sequence | IMP PMID:29809151 The ER membrane protein complex interacts cotranslationally ... | ACCEPT | Summary: The EMC is required for cotranslational insertion of multipass membrane proteins in which stop-transfer membrane-anchor sequences become ER membrane-spanning helices; EMC1 is a constitutive subunit of this insertase. Core EMC process. Reason: Core EMC-mediated process; supported by IMP of EMC subunits in the cotranslational multipass biogenesis study. Supporting Evidence: file:human/EMC1/EMC1-uniprot.txt stop-transfer membrane-anchor sequences become ER membrane spanning |
| GO:0005789 endoplasmic reticulum membrane | IDA PMID:22119785 Defining human ERAD networks through an integrative mapping ... | ACCEPT | Summary: Direct experimental ER membrane localization from the foundational ERAD-network mapping study that first identified the EMC. Core compartment for EMC1. Reason: Experimentally supported core location. Supporting Evidence: file:human/EMC1/EMC1-uniprot.txt SUBCELLULAR LOCATION: Endoplasmic reticulum membrane |
| GO:0005789 endoplasmic reticulum membrane | IDA PMID:32439656 Structural basis for membrane insertion by the human ER memb... | ACCEPT | Summary: Direct (cryo-EM structural) evidence placing EMC1 in the ER membrane as a single-pass type I membrane subunit of the EMC. Core compartment. Reason: Experimentally supported core location. Supporting Evidence: file:human/EMC1/EMC1-uniprot.txt SUBCELLULAR LOCATION: Endoplasmic reticulum membrane |
| GO:0045050 protein insertion into ER membrane by stop-transfer membrane-anchor sequence | IMP PMID:30415835 EMC Is Required to Initiate Accurate Membrane Protein Topoge... | ACCEPT | Summary: IMP evidence (topogenesis study) that the EMC inserts stop-transfer membrane-anchor sequences and sets the N-exo topology of multipass clients such as GPCRs; EMC1 is part of the insertase. Core EMC process. Reason: Core EMC-mediated process. Supporting Evidence: file:human/EMC1/EMC1-uniprot.txt stop-transfer membrane-anchor sequences become ER membrane spanning |
| GO:0032991 protein-containing complex | IDA PMID:28246125 ZMPSTE24 defends against influenza and other pathogenic viru... | KEEP AS NON CORE | Summary: MGI IDA assignment of generic protein-containing complex membership, derived from the ZMPSTE24/IFITM antiviral study in which EMC1 appears as a co-purifying complex component. This is a generic parent of the specific EMC complex term and is uninformative on its own. Reason: Correct but generic (a parent of GO:0072546 EMC complex); the EMC complex term captures the informative complex membership. Per guidelines an experimental IDA is retained, not removed. Supporting Evidence: file:human/EMC1/EMC1-uniprot.txt Component of the ER membrane protein complex (EMC). |
| GO:0016020 membrane | IDA PMID:22119785 Defining human ERAD networks through an integrative mapping ... | KEEP AS NON CORE | Summary: Direct generic membrane localization from the EMC-discovery study; a parent of the specific ER membrane term. Reason: Correct but generic; the ER membrane term captures the informative localization. Supporting Evidence: file:human/EMC1/EMC1-uniprot.txt SUBCELLULAR LOCATION: Endoplasmic reticulum membrane |
| GO:0072546 EMC complex | IDA PMID:22119785 Defining human ERAD networks through an integrative mapping ... | ACCEPT | Summary: Direct experimental identification of EMC1 in the EMC by the foundational ERAD-network mapping study. Core structural identity of EMC1 as the large lumenal scaffold subunit. Reason: Core EMC membership; directly demonstrated. Supporting Evidence: file:human/EMC1/EMC1-uniprot.txt Component of the ER membrane protein complex (EMC). |
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Download this section (compressed HTML)Q: How do CAVIPMR-causing variants in the EMC1 lumenal beta-propeller (e.g. T82M, G868R) impair EMC assembly or client insertion, and why is the nervous system particularly vulnerable?
Q: Does the EMC1 lumenal scaffold confer client selectivity, or does it act purely structurally to position the EMC3/EMC6 catalytic core?
Experiment: Reconstitute the human EMC lacking EMC1 (or carrying CAVIPMR variants) in proteoliposomes and measure insertion of tail-anchored and multipass substrates to define EMC1's structural contribution to insertase activity.
Experiment: Perform quantitative membrane proteomics in EMC1-knockout versus rescued neuronal cells to identify the EMC1-dependent client repertoire underlying CAVIPMR neurodegeneration.
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