ERLN

UniProt ID: P0DI80
Organism: Homo sapiens
Review Status: COMPLETE
Aliases:
SMIM6 C17orf110 ELN
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Gene Description

Endoregulin (ERLN, also known as ELN and SMIM6) is a 62-amino-acid single-pass transmembrane micropeptide of the endoplasmic reticulum membrane and a member of the regulin family of sarco/endoplasmic reticulum Ca2+-ATPase (SERCA) regulators that also includes phospholamban (PLN), sarcolipin (SLN), myoregulin (MRLN), another-regulin (ARLN) and DWORF (STRIT1). It has a short cytosolic N-terminal region, a C-terminal transmembrane helix carrying the conserved SERCA-binding motif, and a short luminal tail. Unlike the muscle regulins, it is expressed mainly in non-muscle epithelia and endothelia, where its distribution overlaps that of SERCA3. The peptide binds SERCA in the same transmembrane groove as phospholamban and inhibits the pump: the mouse peptide lowers the apparent Ca2+ affinity of SERCA3a and SERCA2b in cell homogenates, the purified human peptide lowers the maximal turnover rate of purified SERCA1a in reconstituted membranes, and its expression reduces ER Ca2+ stores in cultured cells. Endoregulin also forms homo-oligomers and hetero-oligomers with other regulins, while binding SERCA as a monomer. No loss-of-function phenotype or disease association has been reported.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0005789 endoplasmic reticulum membrane
IEA
GO_REF:0000044
ACCEPT
Summary: Electronic mapping of the UniProt subcellular location (ER membrane, single-pass), which UniProt bases on the mouse ortholog Q3U0I6.
Reason: Correct and appropriately specific. Endoregulin is a single-TM peptide whose only known partner is the ER-resident SERCA pump; the mouse peptide colocalises with SERCA2b in reticulated ER membranes (PMID:27923914). The location is a prerequisite of its core function (inhibition of SERCA within the ER membrane). No human experimental localisation study was found, but the human peptide is functional in reconstituted membranes with SERCA and interacts with other ER-resident regulins in cells (PMID:34445594, PMID:36523160), and the TM helix and binding motif are conserved.
Supporting Evidence:
PMID:27923914
Similar to MLN, PLN, and SLN, ALN and ELN perfectly colocalized with mCherry-SERCA2b in a pattern consistent with the reticulated membranes of the ER
PMID:34445594
Like their muscle-specific counterparts, ELN and ALN localize to the ER membrane
GO:0005789 endoplasmic reticulum membrane
ISS
GO_REF:0000024
ACCEPT
Summary: Curator transfer of the mouse Q3U0I6 IDA ER membrane annotation (PMID:27923914) to human endoregulin.
Reason: The donor annotation is sound (mouse ELN colocalises with SERCA2b in the ER of COS-7 cells, PMID:27923914) and the human and mouse peptides share the transmembrane helix and SERCA-binding motif. Human experimental localisation data are lacking, so this ISS is the appropriate evidence for human, and it underpins the core function.
Supporting Evidence:
PMID:27923914
Similar to MLN, PLN, and SLN, ALN and ELN perfectly colocalized with mCherry-SERCA2b in a pattern consistent with the reticulated membranes of the ER
GO:0042030 ATPase inhibitor activity
IDA
PMID:34445594
Nothing Regular about the Regulins: Distinct Functional Prop...
NEW
Summary: Proposed new annotation: endoregulin binds SERCA and directly inhibits its Ca2+-ATPase activity.
Reason: Human GOA has no molecular function for ERLN, although this is the defining activity of the gene. The strongest human evidence is PMID:34445594, in which recombinant human ELN co-reconstituted with purified SERCA1a in proteoliposomes lowered the pump's maximal turnover rate. A purified two-component system shows that the peptide itself performs the inhibition, so the participation test for an enzyme-regulator function is met: ELN is the regulator, not a substrate or an indirect requirement. Mouse data corroborate it (PMID:27923914): the mouse peptide co-immunoprecipitates with SERCA2b, is competed off by PLN (same binding groove), and lowers the apparent Ca2+ affinity of SERCA3a. The two studies differ in mechanism (a Vmax effect on SERCA1a versus a KCa effect on SERCA3a) and in isoform, but both show inhibition, and a later live-cell assay found that ELN lowers ER Ca2+ stores (PMID:39921961, abstract only). Comparator check: PLN carries GO:0042030 (IDA and IBA), and SLN carries the more general GO:0004857 enzyme inhibitor activity (not an ancestor of GO:0042030 in current GO; both sit under GO:0140678 molecular function inhibitor activity). The regulins standing in the same role therefore carry this term, and its absence from ERLN reflects how recently the gene was characterised, not a convention. GO:0042030 is chosen over GO:0141110 transporter inhibitor activity for consistency with PLN and because the assay read out ATPase turnover.
Supporting Evidence:
PMID:34445594
With the exception of MLN, recombinant human peptides were expressed as a maltose-binding protein (MBP) fusion
PMID:34445594
whereas ELN selectively alters the turnover rate (Vmax) of SERCA (Figure 7C)
PMID:27923914
All of the micropeptides formed a stable complex with Myc-SERCA2b, but not with the Myc-tag alone
PMID:27923914
coexpression of ALN or ELN caused a significant reduction in the apparent affinity for Ca2+ of SERCA2b and SERCA3a, respectively
GO:1901895 negative regulation of ATPase-coupled calcium transmembrane transporter activity
IDA
PMID:34445594
Nothing Regular about the Regulins: Distinct Functional Prop...
NEW
Summary: Proposed new annotation: by binding SERCA, endoregulin reduces the pump's Ca2+ transport activity.
Reason: This is the process-level expression of the ATPase inhibitor activity, and endoregulin carries out the regulatory step itself by binding the pump. It is therefore a participant, not an upstream requirement. Mouse Q3U0I6 already carries this term (IDA, PMID:27923914, as acts_upstream_of_or_within), from oxalate-supported Ca2+ uptake assays. For human, the reconstitution assay with the purified human peptide (PMID:34445594) provides direct evidence. Comparator check: SLN carries this term by IDA and PLN carries its parent GO:1901894. Broader physiological processes (tissue Ca2+ signalling, epithelial function) are not proposed, because there are no loss-of-function data.
Supporting Evidence:
PMID:34445594
whereas ELN selectively alters the turnover rate (Vmax) of SERCA (Figure 7C)
PMID:27923914
Together, these findings reveal that vertebrates encode five structurally related transmembrane micropeptides that inhibit Ca2+ uptake by diverse SERCA isoforms.

Core Functions

Endoregulin is a single-pass ER membrane micropeptide that binds the SERCA Ca2+-ATPase in its transmembrane regulatory groove (the phospholamban site) and inhibits it. This reduces Ca2+ pumping into the ER in the non-muscle epithelial and endothelial cells where it is expressed, mainly alongside SERCA3. Direct inhibition has been shown with the purified human peptide (reduced SERCA turnover) and with the mouse peptide in cells (reduced apparent Ca2+ affinity of SERCA3a/SERCA2b).

Supporting Evidence:
  • PMID:34445594
    whereas ELN selectively alters the turnover rate (Vmax) of SERCA (Figure 7C)
  • PMID:27923914
    coexpression of ALN or ELN caused a significant reduction in the apparent affinity for Ca2+ of SERCA2b and SERCA3a, respectively

References

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Suggested Questions for Experts

Q: Does endoregulin inhibit SERCA by lowering apparent Ca2+ affinity (as reported for mouse ELN with SERCA3a in cell homogenates) or by lowering Vmax (as reported for the human peptide with SERCA1a in proteoliposomes)? Is the difference due to species, SERCA isoform or assay system?

Suggested experts: Seth L Robia, Howard S Young

Q: Is endogenous human endoregulin protein detectable in the SERCA3-expressing epithelia and endothelia in which its mRNA is found, and does it co-purify with SERCA3 there?

Suggested experts: Douglas M Anderson, Eric N Olson

Q: Does hetero-oligomerisation with other regulins (for example SLN or DWORF) sequester endoregulin away from SERCA in cells that co-express them?

Suggested experts: Seth L Robia

Suggested Experiments

Experiment: Knock out ERLN in a human epithelial cell line that expresses SERCA3 (for example an airway or intestinal epithelial line) and measure ER Ca2+ content with an ER-targeted ratiometric indicator, and SERCA KCa/Vmax in microsomes. Rescue with wild-type versus TM-helix binding-motif mutant endoregulin.

Hypothesis: Endogenous endoregulin tonically inhibits SERCA3 and limits ER Ca2+ stores in epithelial cells.

Experiment: Co-reconstitute purified human endoregulin with purified human SERCA3a and SERCA2b and measure Ca2+-dependent ATPase activity, to resolve the KCa-versus-Vmax discrepancy between the mouse and human studies.

Hypothesis: Human endoregulin inhibits its physiological partner SERCA3 by the same mechanism observed with SERCA1a.

πŸ“š Additional Documentation

Notes

(ERLN-notes.md)

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