ETFB is the beta subunit of the electron-transfer flavoprotein (ETF), a soluble mitochondrial-matrix heterodimer (ETFA + ETFB) that carries a single FAD and one AMP. ETF is the common electron acceptor for a family of matrix FAD-dependent dehydrogenases acting in fatty-acid beta-oxidation, amino-acid catabolism, and choline degradation (including the acyl-CoA dehydrogenases, glutaryl-CoA dehydrogenase, and sarcosine dehydrogenase). Electrons abstracted from these dehydrogenases reduce the ETF-bound FAD, and ETF relays them to the inner-membrane ETF-ubiquinone oxidoreductase (ETFDH) and thence to the respiratory-chain ubiquinone pool, making ETF a third major electron entry point to ubiquinone alongside complexes I and II. The beta subunit provides the AMP-binding site (structural) and a solvent-exposed recognition loop that docks the partner dehydrogenases, positioning them for interprotein electron transfer. Biallelic loss-of-function variants in ETFB (like those in ETFA and ETFDH) cause multiple acyl-CoA dehydrogenase deficiency (MADD) / glutaric acidemia type II.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0009055
electron transfer activity
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phylogenetic (PAN-GO) inference that ETFB enables electron transfer activity. This is the core molecular function of the ETF heterodimer, in which the beta subunit is an integral partner. Well supported by structural, biochemical, and disease evidence.
Reason: Electron transfer activity is the defining, experimentally established molecular function of the ETF complex (accepting electrons from matrix dehydrogenases and relaying them to ETFDH), and ETFB is an obligate structural/recognition component of the electron-transferring heterodimer. The IBA is consistent with the human IDA/TAS annotations below.
Supporting Evidence:
PMID:8962055
electron shuttles between primary flavoprotein dehydrogenases involved in
PMID:25416781
ETF acts as a mobile electron carrier that shuttles electrons between several FAD-containing dehydrogenases present in the mitochondrial matrix and the membrane-bound ETF:quinone oxidoreductase
|
|
GO:0005739
mitochondrion
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Phylogenetic inference that ETFB is active in the mitochondrion. Correct but less precise than the mitochondrial matrix localization directly demonstrated for the human protein.
Reason: ETFB is a bona fide mitochondrial protein, but the specific and experimentally supported location is the mitochondrial matrix (GO:0005759, IDA below). Retain the broader mitochondrion term as non-core; the matrix term captures the precise location.
Supporting Evidence:
PMID:8504797
contains the information necessary to reach the mitochondrial matrix
|
|
GO:0033539
fatty acid beta-oxidation using acyl-CoA dehydrogenase
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phylogenetic inference that ETFB is involved in fatty-acid beta-oxidation via acyl-CoA dehydrogenases. ETF is the obligatory electron acceptor for the matrix acyl-CoA dehydrogenases of fatty-acid beta-oxidation, so this is a core biological process for the gene.
Reason: Fatty-acid beta-oxidation via acyl-CoA dehydrogenases depends on ETF accepting electrons from those dehydrogenases; loss of ETFB blocks this flux and causes MADD. Consistent with the human IDA annotation (PMID:25416781) and disease evidence (PMID:7912128).
Supporting Evidence:
PMID:25416781
e.g. medium chain acyl-CoA dehydrogenase (MCAD), are involved in β-oxidation of fatty acids
PMID:7912128
cDNA complements the genetic defect and restores the beta-oxidation flux to
|
|
GO:0005739
mitochondrion
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: ARBA machine-learning electronic annotation to mitochondrion. Correct but superseded in precision by the mitochondrial-matrix annotations.
Reason: Consistent with the experimentally supported mitochondrial-matrix localization; retain as a broader, non-core location term.
Supporting Evidence:
PMID:8504797
contains the information necessary to reach the mitochondrial matrix
|
|
GO:0005759
mitochondrial matrix
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: Electronic annotation mapping the UniProt subcellular-location term (Mitochondrion matrix) to GO:0005759. Matches the experimentally demonstrated matrix localization of ETFB.
Reason: ETFB is imported into and resides in the mitochondrial matrix; this is the precise, core cellular location, directly supported by import assays (PMID:8504797) and UniProt.
Supporting Evidence:
PMID:8504797
contains the information necessary to reach the mitochondrial matrix
|
|
GO:0009055
electron transfer activity
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: InterPro2GO electronic annotation of electron transfer activity based on the ETF beta-subunit domain signatures (IPR000049, IPR012255). Consistent with the core molecular function.
Reason: The InterPro-to-GO mapping correctly assigns the ETF electron transfer activity to ETFB via its family domains; redundant with, and supported by, the IDA/TAS/IBA annotations.
Supporting Evidence:
PMID:8962055
electron shuttles between primary flavoprotein dehydrogenases involved in
|
|
GO:0005515
protein binding
|
IPI
PMID:27499296 Mitochondrial Protein Interaction Mapping Identifies Regulat... |
MARK AS OVER ANNOTATED |
Summary: IntAct-curated physical interaction (IPI) of ETFB with ETFA (P13804) and ETFRF1/LYRM5 (Q6IPR1), from a mitochondrial interaction-mapping study. These are real, biologically meaningful interactions (ETFA is the partner subunit; ETFRF1 is the ETF deflavinase), but the GO term itself is the uninformative generic "protein binding".
Reason: The underlying interactions are genuine and important, but bare protein binding (GO:0005515) conveys no specific molecular function. Per curation policy the experimental IPI is retained rather than removed; the informative content (partner-subunit assembly, ETFRF1-mediated deflavination) is captured in core_functions and the ETF-complex annotation.
Supporting Evidence:
PMID:27499296
LYRM5 interacts with and deflavinates
|
|
GO:0005515
protein binding
|
IPI
PMID:33961781 Dual proteome-scale networks reveal cell-specific remodeling... |
MARK AS OVER ANNOTATED |
Summary: IntAct-curated interactions of ETFB with ETFA (P13804) and ETFRF1 (Q6IPR1) from the proteome-scale BioPlex AP-MS interactome. Uninformative generic protein-binding term.
Reason: High-throughput AP-MS interactome data; the ETFA and ETFRF1 interactions are consistent with the known ETF complex biology, but the generic protein binding term adds no specific functional information. Retained as an experimental IPI per policy.
Supporting Evidence:
PMID:33961781
BioPlex 3.0, results from affinity purification
|
|
GO:0005515
protein binding
|
IPI
PMID:40205054 Multimodal cell maps as a foundation for structural and func... |
MARK AS OVER ANNOTATED |
Summary: IntAct-curated interaction of ETFB with ETFA (P13804) from a multimodal (AP-MS + immunofluorescence) cell-map study. Generic protein-binding term.
Reason: The ETFA interaction reflects the constitutive ETF heterodimer, but the bare protein binding term is uninformative. Retained as an experimental IPI per policy; specific content is captured by the ETF-complex annotation.
Supporting Evidence:
PMID:40205054
interacting partners were identified by tandem MS (AP–MS)
|
|
GO:0033539
fatty acid beta-oxidation using acyl-CoA dehydrogenase
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Combined multi-method electronic annotation (with mouse ortholog Q9DCW4) to fatty-acid beta-oxidation using acyl-CoA dehydrogenase. Consistent with the curated IDA/IBA annotations of the same term.
Reason: Redundant electronic support for a core biological process that is independently established experimentally (PMID:25416781) and by disease complementation (PMID:7912128).
Supporting Evidence:
PMID:25416781
e.g. medium chain acyl-CoA dehydrogenase (MCAD), are involved in β-oxidation of fatty acids
|
|
GO:0005759
mitochondrial matrix
|
NAS
PMID:8504797 cDNA cloning and mitochondrial import of the beta-subunit of... |
ACCEPT |
Summary: ComplexPortal (CPX-2731) non-traceable-author-statement assignment of the matrix location, citing the ETFB cloning/import study. Correct core location.
Reason: The cited study demonstrated that beta-ETF is imported into the mitochondrial matrix; the matrix is the established core location of the ETF complex.
Supporting Evidence:
PMID:8504797
contains the information necessary to reach the mitochondrial matrix
|
|
GO:0009063
amino acid catabolic process
|
IDA
PMID:25416781 Human METTL20 is a mitochondrial lysine methyltransferase th... |
ACCEPT |
Summary: ComplexPortal IDA assigning ETFB to amino-acid catabolism, reflecting that several ETF-partner dehydrogenases (e.g. glutaryl-CoA and isovaleryl-CoA dehydrogenases) act in amino-acid oxidation. ETF is their obligatory electron acceptor.
Reason: ETF accepts electrons from dehydrogenases involved in amino-acid catabolism (glutaryl-CoA, isovaleryl-CoA dehydrogenases), and ETFB methylation reduces electron uptake from GCDH; loss of ETFB disrupts amino-acid catabolic flux (part of the MADD phenotype). A core biological process, though broader than the fatty-acid term.
Supporting Evidence:
PMID:25416781
glutaryl-CoA dehydrogenase (GCDH) and isovaleryl-CoA dehydrogenase, are involved in the oxidation of amino acids
|
|
GO:0022904
respiratory electron transport chain
|
IDA
PMID:25416781 Human METTL20 is a mitochondrial lysine methyltransferase th... |
ACCEPT |
Summary: ComplexPortal IDA linking ETFB to the respiratory electron transport chain. ETF relays electrons from matrix dehydrogenases into the ubiquinone pool via ETFDH, acting as a third major electron entry point after complexes I and II.
Reason: ETF feeds electrons into the respiratory-chain ubiquinone pool through ETFDH; the cited study explicitly frames ETF as the third major provider of electrons to the ubiquinone pool of the respiratory chain. Core process.
Supporting Evidence:
PMID:25416781
it is the third major provider of electrons to the ubiquinone pool of the mitochondrial respiratory chain
|
|
GO:0033539
fatty acid beta-oxidation using acyl-CoA dehydrogenase
|
IDA
PMID:25416781 Human METTL20 is a mitochondrial lysine methyltransferase th... |
ACCEPT |
Summary: ComplexPortal IDA for fatty-acid beta-oxidation using acyl-CoA dehydrogenase. The cited study shows ETFB receives electrons from medium-chain acyl-CoA dehydrogenase (MCAD), a core beta-oxidation enzyme.
Reason: Directly supported experimental annotation for a core beta-oxidation process. ETF is the electron acceptor for the acyl-CoA dehydrogenases of fatty-acid beta-oxidation, and ETFB methylation modulates electron uptake from MCAD.
Supporting Evidence:
PMID:25416781
reduced its ability to receive electrons from the medium chain acyl-CoA dehydrogenase and the glutaryl-CoA dehydrogenase
|
|
GO:0045251
electron transfer flavoprotein complex
|
IPI
PMID:8962055 Three-dimensional structure of human electron transfer flavo... |
ACCEPT |
Summary: ComplexPortal part_of annotation to the electron transfer flavoprotein complex, based on the human ETF crystal structure showing the alpha/beta heterodimer. This is the specific, core complex for ETFB.
Reason: The 2.1-A crystal structure defines ETF as a heterodimer in which the beta subunit contributes the third structural domain and the AMP site; ETFB is an obligate part of the ETF complex (ComplexPortal CPX-2731). Precise and correct.
Supporting Evidence:
PMID:8962055
third domain is made up entirely by the beta subunit
|
|
GO:0005739
mitochondrion
|
IDA
GO_REF:0000052 |
KEEP AS NON CORE |
Summary: HPA immunofluorescence-based IDA placing ETFB in the mitochondrion. Consistent with the established mitochondrial-matrix localization.
Reason: Correct mitochondrial localization at organelle resolution; the more precise matrix term is the core location. Retain as non-core.
Supporting Evidence:
PMID:8504797
contains the information necessary to reach the mitochondrial matrix
|
|
GO:0005515
protein binding
|
IPI
PMID:35362222 S1P defects cause a new entity of cataract, alopecia, oral m... |
MARK AS OVER ANNOTATED |
Summary: UniProt/IntAct IPI recording interaction of ETFB with ETFA (P13804) and MBTPS1/S1P (Q14703). MBTPS1 forms a trimeric complex with ETFA/ETFB that promotes FAD incorporation and stabilizes the heterodimer. Real interactions, but the GO term is generic protein binding.
Reason: The MBTPS1 and ETFA interactions are genuine and functionally meaningful (MBTPS1 stabilizes and flavinates the ETF heterodimer), but the bare protein binding term is uninformative. Retained as an experimental IPI per policy; the regulatory content is noted in the notes and core functions rather than as protein binding.
Supporting Evidence:
PMID:35362222
protein that forms a trimeric complex with ETFA/ETFB. S1P enhances ETFA/ETFB
|
|
GO:0005739
mitochondrion
|
HTP
PMID:34800366 Quantitative high-confidence human mitochondrial proteome an... |
KEEP AS NON CORE |
Summary: High-throughput assignment of ETFB to the mitochondrion from a high-confidence quantitative mitochondrial-proteome study. Consistent with the established localization.
Reason: Corroborates mitochondrial localization at organelle resolution; the matrix term is the precise core location. Retain as non-core.
Supporting Evidence:
PMID:8504797
contains the information necessary to reach the mitochondrial matrix
|
|
GO:0005759
mitochondrial matrix
|
TAS
Reactome:R-HSA-8931858 |
ACCEPT |
Summary: Reactome traceable-author-statement (ETFBKMT/METTL20 methylation reaction) placing ETFB in the mitochondrial matrix. Correct core location.
Reason: Consistent with the experimentally established matrix localization; the Reactome reaction annotation correctly reflects the matrix compartment where ETFB is methylated and functions.
Supporting Evidence:
PMID:8504797
contains the information necessary to reach the mitochondrial matrix
|
|
GO:0005759
mitochondrial matrix
|
IDA
PMID:8504797 cDNA cloning and mitochondrial import of the beta-subunit of... |
ACCEPT |
Summary: UniProt IDA for mitochondrial matrix, from the beta-ETF cloning study demonstrating energy-dependent import of the polypeptide into the matrix. Directly supports the core location.
Reason: The cited import experiments show that the cDNA-encoded beta-ETF reaches the mitochondrial matrix; this is the primary experimental evidence for the core location.
Supporting Evidence:
PMID:8504797
contains the information necessary to reach the mitochondrial matrix
|
|
GO:0009055
electron transfer activity
|
IDA
PMID:25416781 Human METTL20 is a mitochondrial lysine methyltransferase th... |
ACCEPT |
Summary: UniProt IDA for electron transfer activity, from the METTL20/ETFB study that measured ETF-mediated electron transfer from acyl-CoA dehydrogenases to an artificial acceptor and showed methylation of ETFB reduces this activity. Core molecular function.
Reason: Direct assay evidence that ETFB participates in electron transfer (accepting electrons from MCAD and GCDH), and that modification of the ETFB recognition loop modulates the rate. This is the defining molecular function.
Supporting Evidence:
PMID:25416781
reduced its ability to receive electrons from the medium chain acyl-CoA dehydrogenase and the glutaryl-CoA dehydrogenase
|
|
GO:0005759
mitochondrial matrix
|
TAS
Reactome:R-HSA-169260 |
ACCEPT |
Summary: Reactome TAS (electron transfer from fatty-acid beta-oxidation to ETF) placing ETFB in the matrix compartment. Correct core location.
Reason: Consistent with experimentally established matrix localization; Reactome correctly situates the ETF electron-uptake reaction in the mitochondrial matrix.
Supporting Evidence:
PMID:8504797
contains the information necessary to reach the mitochondrial matrix
|
|
GO:0005759
mitochondrial matrix
|
TAS
Reactome:R-HSA-169270 |
ACCEPT |
Summary: Reactome TAS (ETFDH re-oxidizes reduced ETF, reducing CoQ) placing ETFB in the matrix. Correct core location.
Reason: Consistent with the established matrix localization of ETF; correctly reflects the compartment of the ETF/ETFDH electron-relay reaction.
Supporting Evidence:
PMID:8504797
contains the information necessary to reach the mitochondrial matrix
|
|
GO:0009055
electron transfer activity
|
TAS
PMID:7912128 Mutations and polymorphisms of the gene encoding the beta-su... |
ACCEPT |
Summary: TAS for electron transfer activity, citing the ETFB glutaric-acidemia-II mutation study. The GA2B mutation R164Q reduces ETF electron transfer activity, supporting the core molecular function.
Reason: Disease-mutation evidence corroborates that ETFB is required for ETF electron transfer activity; complementation with wild-type beta-ETF cDNA restores beta-oxidation flux. Consistent with the IDA/IBA annotations.
Supporting Evidence:
PMID:7912128
cDNA complements the genetic defect and restores the beta-oxidation flux to
|
|
GO:0005759
mitochondrial matrix
|
TAS
PMID:8617498 Assignment of Etfdh, Etfb, and Etfa to chromosomes 3, 7, and... |
ACCEPT |
Summary: TAS for mitochondrial matrix, citing the mouse Etf/Etfdh chromosomal mapping paper, which states ETF is located in the mitochondrial matrix and is an obligatory electron acceptor for several dehydrogenases. Correct core location.
Reason: The cited review-style statement correctly places ETF in the mitochondrial matrix, consistent with human experimental import data.
Supporting Evidence:
PMID:8617498
obligatory electron acceptor for several dehydrogenases
|
ETFB is the beta subunit of the electron-transfer flavoprotein (ETF), a soluble
mitochondrial-matrix FAD-containing heterodimer (ETFA + ETFB). ETF is the common
electron acceptor for the matrix FAD-dependent acyl-CoA dehydrogenases (fatty-acid
beta-oxidation and amino-acid catabolism), relaying electrons to ETF-ubiquinone
oxidoreductase (ETFDH) and thence to the respiratory-chain ubiquinone pool.
Supporting text:
- [file:UniProt P38117 FUNCTION "Heterodimeric electron transfer flavoprotein that accepts electrons from several mitochondrial dehydrogenases, including acyl-CoA dehydrogenases, glutaryl-CoA and sarcosine dehydrogenase"]
- [file:UniProt P38117 FUNCTION "It transfers the electrons to the main mitochondrial respiratory chain via ETF-ubiquinone oxidoreductase"]
- [PMID:8962055 abstract "They function as electron shuttles between primary flavoprotein dehydrogenases involved in mitochondrial fatty acid and amino acid catabolism and the membrane-bound electron transfer flavoprotein ubiquinone oxidoreductase."]
- PMID:25416781
- PMID:25416781
falcon DR file not present within poll window; grounded in UniProt, cached PMIDs, Reactome,
and the MADD disorder KB.
id: P38117
gene_symbol: ETFB
product_type: PROTEIN
status: INITIALIZED
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: ETFB is the beta subunit of the electron-transfer flavoprotein (ETF),
a soluble mitochondrial-matrix heterodimer (ETFA + ETFB) that carries a single FAD
and one AMP. ETF is the common electron acceptor for a family of matrix FAD-dependent
dehydrogenases acting in fatty-acid beta-oxidation, amino-acid catabolism, and choline
degradation (including the acyl-CoA dehydrogenases, glutaryl-CoA dehydrogenase, and
sarcosine dehydrogenase). Electrons abstracted from these dehydrogenases reduce the
ETF-bound FAD, and ETF relays them to the inner-membrane ETF-ubiquinone oxidoreductase
(ETFDH) and thence to the respiratory-chain ubiquinone pool, making ETF a third major
electron entry point to ubiquinone alongside complexes I and II. The beta subunit
provides the AMP-binding site (structural) and a solvent-exposed recognition loop that
docks the partner dehydrogenases, positioning them for interprotein electron transfer.
Biallelic loss-of-function variants in ETFB (like those in ETFA and ETFDH) cause multiple
acyl-CoA dehydrogenase deficiency (MADD) / glutaric acidemia type II.
alternative_products:
- name: '1'
id: P38117-1
- name: '2'
id: P38117-2
sequence_note: VSP_017850
existing_annotations:
- term:
id: GO:0009055
label: electron transfer activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: Phylogenetic (PAN-GO) inference that ETFB enables electron transfer activity.
This is the core molecular function of the ETF heterodimer, in which the beta
subunit is an integral partner. Well supported by structural, biochemical, and
disease evidence.
action: ACCEPT
reason: Electron transfer activity is the defining, experimentally established molecular
function of the ETF complex (accepting electrons from matrix dehydrogenases and
relaying them to ETFDH), and ETFB is an obligate structural/recognition component
of the electron-transferring heterodimer. The IBA is consistent with the human
IDA/TAS annotations below.
supported_by:
- reference_id: PMID:8962055
supporting_text: electron shuttles between primary flavoprotein dehydrogenases involved in
- reference_id: PMID:25416781
supporting_text: "ETF acts as a mobile electron carrier that shuttles electrons between several FAD-containing dehydrogenases present in the mitochondrial matrix and the membrane-bound ETF:quinone oxidoreductase"
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: Phylogenetic inference that ETFB is active in the mitochondrion. Correct
but less precise than the mitochondrial matrix localization directly demonstrated
for the human protein.
action: KEEP_AS_NON_CORE
reason: ETFB is a bona fide mitochondrial protein, but the specific and experimentally
supported location is the mitochondrial matrix (GO:0005759, IDA below). Retain
the broader mitochondrion term as non-core; the matrix term captures the precise
location.
supported_by:
- reference_id: PMID:8504797
supporting_text: contains the information necessary to reach the mitochondrial matrix
- term:
id: GO:0033539
label: fatty acid beta-oxidation using acyl-CoA dehydrogenase
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: Phylogenetic inference that ETFB is involved in fatty-acid beta-oxidation
via acyl-CoA dehydrogenases. ETF is the obligatory electron acceptor for the
matrix acyl-CoA dehydrogenases of fatty-acid beta-oxidation, so this is a core
biological process for the gene.
action: ACCEPT
reason: Fatty-acid beta-oxidation via acyl-CoA dehydrogenases depends on ETF accepting
electrons from those dehydrogenases; loss of ETFB blocks this flux and causes MADD.
Consistent with the human IDA annotation (PMID:25416781) and disease evidence
(PMID:7912128).
supported_by:
- reference_id: PMID:25416781
supporting_text: "e.g. medium chain acyl-CoA dehydrogenase (MCAD), are involved in β-oxidation of fatty acids"
- reference_id: PMID:7912128
supporting_text: cDNA complements the genetic defect and restores the beta-oxidation flux to
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: located_in
review:
summary: ARBA machine-learning electronic annotation to mitochondrion. Correct but
superseded in precision by the mitochondrial-matrix annotations.
action: KEEP_AS_NON_CORE
reason: Consistent with the experimentally supported mitochondrial-matrix localization;
retain as a broader, non-core location term.
supported_by:
- reference_id: PMID:8504797
supporting_text: contains the information necessary to reach the mitochondrial matrix
- term:
id: GO:0005759
label: mitochondrial matrix
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: Electronic annotation mapping the UniProt subcellular-location term
(Mitochondrion matrix) to GO:0005759. Matches the experimentally demonstrated
matrix localization of ETFB.
action: ACCEPT
reason: ETFB is imported into and resides in the mitochondrial matrix; this is the
precise, core cellular location, directly supported by import assays (PMID:8504797)
and UniProt.
supported_by:
- reference_id: PMID:8504797
supporting_text: contains the information necessary to reach the mitochondrial matrix
- term:
id: GO:0009055
label: electron transfer activity
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: enables
review:
summary: InterPro2GO electronic annotation of electron transfer activity based on
the ETF beta-subunit domain signatures (IPR000049, IPR012255). Consistent with
the core molecular function.
action: ACCEPT
reason: The InterPro-to-GO mapping correctly assigns the ETF electron transfer
activity to ETFB via its family domains; redundant with, and supported by, the
IDA/TAS/IBA annotations.
supported_by:
- reference_id: PMID:8962055
supporting_text: electron shuttles between primary flavoprotein dehydrogenases involved in
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:27499296
qualifier: enables
review:
summary: IntAct-curated physical interaction (IPI) of ETFB with ETFA (P13804) and
ETFRF1/LYRM5 (Q6IPR1), from a mitochondrial interaction-mapping study. These are
real, biologically meaningful interactions (ETFA is the partner subunit; ETFRF1
is the ETF deflavinase), but the GO term itself is the uninformative generic
"protein binding".
action: MARK_AS_OVER_ANNOTATED
reason: The underlying interactions are genuine and important, but bare protein
binding (GO:0005515) conveys no specific molecular function. Per curation policy
the experimental IPI is retained rather than removed; the informative content
(partner-subunit assembly, ETFRF1-mediated deflavination) is captured in
core_functions and the ETF-complex annotation.
supported_by:
- reference_id: PMID:27499296
supporting_text: LYRM5 interacts with and deflavinates
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:33961781
qualifier: enables
review:
summary: IntAct-curated interactions of ETFB with ETFA (P13804) and ETFRF1 (Q6IPR1)
from the proteome-scale BioPlex AP-MS interactome. Uninformative generic
protein-binding term.
action: MARK_AS_OVER_ANNOTATED
reason: High-throughput AP-MS interactome data; the ETFA and ETFRF1 interactions
are consistent with the known ETF complex biology, but the generic protein binding
term adds no specific functional information. Retained as an experimental IPI per
policy.
supported_by:
- reference_id: PMID:33961781
supporting_text: BioPlex 3.0, results from affinity purification
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:40205054
qualifier: enables
review:
summary: IntAct-curated interaction of ETFB with ETFA (P13804) from a multimodal
(AP-MS + immunofluorescence) cell-map study. Generic protein-binding term.
action: MARK_AS_OVER_ANNOTATED
reason: The ETFA interaction reflects the constitutive ETF heterodimer, but the
bare protein binding term is uninformative. Retained as an experimental IPI per
policy; specific content is captured by the ETF-complex annotation.
supported_by:
- reference_id: PMID:40205054
supporting_text: "interacting partners were identified by tandem MS (AP–MS)"
- term:
id: GO:0033539
label: fatty acid beta-oxidation using acyl-CoA dehydrogenase
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: involved_in
review:
summary: Combined multi-method electronic annotation (with mouse ortholog Q9DCW4)
to fatty-acid beta-oxidation using acyl-CoA dehydrogenase. Consistent with the
curated IDA/IBA annotations of the same term.
action: ACCEPT
reason: Redundant electronic support for a core biological process that is
independently established experimentally (PMID:25416781) and by disease
complementation (PMID:7912128).
supported_by:
- reference_id: PMID:25416781
supporting_text: "e.g. medium chain acyl-CoA dehydrogenase (MCAD), are involved in β-oxidation of fatty acids"
- term:
id: GO:0005759
label: mitochondrial matrix
evidence_type: NAS
original_reference_id: PMID:8504797
qualifier: located_in
review:
summary: ComplexPortal (CPX-2731) non-traceable-author-statement assignment of the
matrix location, citing the ETFB cloning/import study. Correct core location.
action: ACCEPT
reason: The cited study demonstrated that beta-ETF is imported into the mitochondrial
matrix; the matrix is the established core location of the ETF complex.
supported_by:
- reference_id: PMID:8504797
supporting_text: contains the information necessary to reach the mitochondrial matrix
- term:
id: GO:0009063
label: amino acid catabolic process
evidence_type: IDA
original_reference_id: PMID:25416781
qualifier: involved_in
review:
summary: ComplexPortal IDA assigning ETFB to amino-acid catabolism, reflecting that
several ETF-partner dehydrogenases (e.g. glutaryl-CoA and isovaleryl-CoA
dehydrogenases) act in amino-acid oxidation. ETF is their obligatory electron
acceptor.
action: ACCEPT
reason: ETF accepts electrons from dehydrogenases involved in amino-acid catabolism
(glutaryl-CoA, isovaleryl-CoA dehydrogenases), and ETFB methylation reduces
electron uptake from GCDH; loss of ETFB disrupts amino-acid catabolic flux (part
of the MADD phenotype). A core biological process, though broader than the
fatty-acid term.
supported_by:
- reference_id: PMID:25416781
supporting_text: "glutaryl-CoA dehydrogenase (GCDH) and isovaleryl-CoA dehydrogenase, are involved in the oxidation of amino acids"
- term:
id: GO:0022904
label: respiratory electron transport chain
evidence_type: IDA
original_reference_id: PMID:25416781
qualifier: involved_in
review:
summary: ComplexPortal IDA linking ETFB to the respiratory electron transport chain.
ETF relays electrons from matrix dehydrogenases into the ubiquinone pool via ETFDH,
acting as a third major electron entry point after complexes I and II.
action: ACCEPT
reason: ETF feeds electrons into the respiratory-chain ubiquinone pool through ETFDH;
the cited study explicitly frames ETF as the third major provider of electrons to
the ubiquinone pool of the respiratory chain. Core process.
supported_by:
- reference_id: PMID:25416781
supporting_text: it is the third major provider of electrons to the ubiquinone pool of the mitochondrial respiratory chain
- term:
id: GO:0033539
label: fatty acid beta-oxidation using acyl-CoA dehydrogenase
evidence_type: IDA
original_reference_id: PMID:25416781
qualifier: involved_in
review:
summary: ComplexPortal IDA for fatty-acid beta-oxidation using acyl-CoA dehydrogenase.
The cited study shows ETFB receives electrons from medium-chain acyl-CoA
dehydrogenase (MCAD), a core beta-oxidation enzyme.
action: ACCEPT
reason: Directly supported experimental annotation for a core beta-oxidation process.
ETF is the electron acceptor for the acyl-CoA dehydrogenases of fatty-acid
beta-oxidation, and ETFB methylation modulates electron uptake from MCAD.
supported_by:
- reference_id: PMID:25416781
supporting_text: reduced its ability to receive electrons from the medium chain acyl-CoA dehydrogenase and the glutaryl-CoA dehydrogenase
- term:
id: GO:0045251
label: electron transfer flavoprotein complex
evidence_type: IPI
original_reference_id: PMID:8962055
qualifier: part_of
review:
summary: ComplexPortal part_of annotation to the electron transfer flavoprotein
complex, based on the human ETF crystal structure showing the alpha/beta
heterodimer. This is the specific, core complex for ETFB.
action: ACCEPT
reason: The 2.1-A crystal structure defines ETF as a heterodimer in which the beta
subunit contributes the third structural domain and the AMP site; ETFB is an
obligate part of the ETF complex (ComplexPortal CPX-2731). Precise and correct.
supported_by:
- reference_id: PMID:8962055
supporting_text: third domain is made up entirely by the beta subunit
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IDA
original_reference_id: GO_REF:0000052
qualifier: located_in
review:
summary: HPA immunofluorescence-based IDA placing ETFB in the mitochondrion.
Consistent with the established mitochondrial-matrix localization.
action: KEEP_AS_NON_CORE
reason: Correct mitochondrial localization at organelle resolution; the more precise
matrix term is the core location. Retain as non-core.
supported_by:
- reference_id: PMID:8504797
supporting_text: contains the information necessary to reach the mitochondrial matrix
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:35362222
qualifier: enables
review:
summary: UniProt/IntAct IPI recording interaction of ETFB with ETFA (P13804) and
MBTPS1/S1P (Q14703). MBTPS1 forms a trimeric complex with ETFA/ETFB that promotes
FAD incorporation and stabilizes the heterodimer. Real interactions, but the GO
term is generic protein binding.
action: MARK_AS_OVER_ANNOTATED
reason: The MBTPS1 and ETFA interactions are genuine and functionally meaningful
(MBTPS1 stabilizes and flavinates the ETF heterodimer), but the bare protein
binding term is uninformative. Retained as an experimental IPI per policy; the
regulatory content is noted in the notes and core functions rather than as protein
binding.
supported_by:
- reference_id: PMID:35362222
supporting_text: protein that forms a trimeric complex with ETFA/ETFB. S1P enhances ETFA/ETFB
- term:
id: GO:0005739
label: mitochondrion
evidence_type: HTP
original_reference_id: PMID:34800366
qualifier: located_in
review:
summary: High-throughput assignment of ETFB to the mitochondrion from a
high-confidence quantitative mitochondrial-proteome study. Consistent with the
established localization.
action: KEEP_AS_NON_CORE
reason: Corroborates mitochondrial localization at organelle resolution; the matrix
term is the precise core location. Retain as non-core.
supported_by:
- reference_id: PMID:8504797
supporting_text: contains the information necessary to reach the mitochondrial matrix
- term:
id: GO:0005759
label: mitochondrial matrix
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8931858
qualifier: located_in
review:
summary: Reactome traceable-author-statement (ETFBKMT/METTL20 methylation reaction)
placing ETFB in the mitochondrial matrix. Correct core location.
action: ACCEPT
reason: Consistent with the experimentally established matrix localization; the
Reactome reaction annotation correctly reflects the matrix compartment where ETFB
is methylated and functions.
supported_by:
- reference_id: PMID:8504797
supporting_text: contains the information necessary to reach the mitochondrial matrix
- term:
id: GO:0005759
label: mitochondrial matrix
evidence_type: IDA
original_reference_id: PMID:8504797
qualifier: located_in
review:
summary: UniProt IDA for mitochondrial matrix, from the beta-ETF cloning study
demonstrating energy-dependent import of the polypeptide into the matrix.
Directly supports the core location.
action: ACCEPT
reason: The cited import experiments show that the cDNA-encoded beta-ETF reaches the
mitochondrial matrix; this is the primary experimental evidence for the core
location.
supported_by:
- reference_id: PMID:8504797
supporting_text: contains the information necessary to reach the mitochondrial matrix
- term:
id: GO:0009055
label: electron transfer activity
evidence_type: IDA
original_reference_id: PMID:25416781
qualifier: enables
review:
summary: UniProt IDA for electron transfer activity, from the METTL20/ETFB study
that measured ETF-mediated electron transfer from acyl-CoA dehydrogenases to an
artificial acceptor and showed methylation of ETFB reduces this activity. Core
molecular function.
action: ACCEPT
reason: Direct assay evidence that ETFB participates in electron transfer (accepting
electrons from MCAD and GCDH), and that modification of the ETFB recognition loop
modulates the rate. This is the defining molecular function.
supported_by:
- reference_id: PMID:25416781
supporting_text: reduced its ability to receive electrons from the medium chain acyl-CoA dehydrogenase and the glutaryl-CoA dehydrogenase
- term:
id: GO:0005759
label: mitochondrial matrix
evidence_type: TAS
original_reference_id: Reactome:R-HSA-169260
qualifier: located_in
review:
summary: Reactome TAS (electron transfer from fatty-acid beta-oxidation to ETF)
placing ETFB in the matrix compartment. Correct core location.
action: ACCEPT
reason: Consistent with experimentally established matrix localization; Reactome
correctly situates the ETF electron-uptake reaction in the mitochondrial matrix.
supported_by:
- reference_id: PMID:8504797
supporting_text: contains the information necessary to reach the mitochondrial matrix
- term:
id: GO:0005759
label: mitochondrial matrix
evidence_type: TAS
original_reference_id: Reactome:R-HSA-169270
qualifier: located_in
review:
summary: Reactome TAS (ETFDH re-oxidizes reduced ETF, reducing CoQ) placing ETFB in
the matrix. Correct core location.
action: ACCEPT
reason: Consistent with the established matrix localization of ETF; correctly
reflects the compartment of the ETF/ETFDH electron-relay reaction.
supported_by:
- reference_id: PMID:8504797
supporting_text: contains the information necessary to reach the mitochondrial matrix
- term:
id: GO:0009055
label: electron transfer activity
evidence_type: TAS
original_reference_id: PMID:7912128
qualifier: enables
review:
summary: TAS for electron transfer activity, citing the ETFB glutaric-acidemia-II
mutation study. The GA2B mutation R164Q reduces ETF electron transfer activity,
supporting the core molecular function.
action: ACCEPT
reason: Disease-mutation evidence corroborates that ETFB is required for ETF
electron transfer activity; complementation with wild-type beta-ETF cDNA restores
beta-oxidation flux. Consistent with the IDA/IBA annotations.
supported_by:
- reference_id: PMID:7912128
supporting_text: cDNA complements the genetic defect and restores the beta-oxidation flux to
- term:
id: GO:0005759
label: mitochondrial matrix
evidence_type: TAS
original_reference_id: PMID:8617498
qualifier: located_in
review:
summary: TAS for mitochondrial matrix, citing the mouse Etf/Etfdh chromosomal
mapping paper, which states ETF is located in the mitochondrial matrix and is an
obligatory electron acceptor for several dehydrogenases. Correct core location.
action: ACCEPT
reason: The cited review-style statement correctly places ETF in the mitochondrial
matrix, consistent with human experimental import data.
supported_by:
- reference_id: PMID:8617498
supporting_text: obligatory electron acceptor for several dehydrogenases
core_functions:
- description: Beta subunit of the electron-transfer flavoprotein (ETF) heterodimer;
together with ETFA it accepts electrons from matrix FAD-dependent dehydrogenases
and relays them to ETF-ubiquinone oxidoreductase, functioning as a mobile electron
carrier.
molecular_function:
id: GO:0009055
label: electron transfer activity
directly_involved_in:
- id: GO:0022904
label: respiratory electron transport chain
supported_by:
- reference_id: PMID:25416781
supporting_text: it is the third major provider of electrons to the ubiquinone pool of the mitochondrial respiratory chain
- reference_id: PMID:8962055
supporting_text: electron shuttles between primary flavoprotein dehydrogenases involved in
in_complex:
id: GO:0045251
label: electron transfer flavoprotein complex
locations:
- id: GO:0005759
label: mitochondrial matrix
- description: As part of ETF, accepts electrons from acyl-CoA dehydrogenases of
mitochondrial fatty-acid beta-oxidation (e.g. medium-chain acyl-CoA dehydrogenase),
coupling beta-oxidation to the respiratory chain; the ETFB recognition loop docks
these dehydrogenases.
molecular_function:
id: GO:0009055
label: electron transfer activity
directly_involved_in:
- id: GO:0033539
label: fatty acid beta-oxidation using acyl-CoA dehydrogenase
supported_by:
- reference_id: PMID:25416781
supporting_text: reduced its ability to receive electrons from the medium chain acyl-CoA dehydrogenase and the glutaryl-CoA dehydrogenase
- reference_id: PMID:7912128
supporting_text: cDNA complements the genetic defect and restores the beta-oxidation flux to
in_complex:
id: GO:0045251
label: electron transfer flavoprotein complex
locations:
- id: GO:0005759
label: mitochondrial matrix
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO
terms
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location
vocabulary mapping, accompanied by conservative changes to GO terms applied by
UniProt
findings: []
- id: GO_REF:0000052
title: Gene Ontology annotation based on curation of immunofluorescence data
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning models
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:25416781
title: Human METTL20 is a mitochondrial lysine methyltransferase that targets the
β subunit of electron transfer flavoprotein (ETFβ) and modulates its activity.
findings:
- statement: ETF is a mobile electron carrier that shuttles electrons from matrix
FAD-containing dehydrogenases to the membrane-bound ETF quinone oxidoreductase,
and is the third major provider of electrons to the respiratory-chain ubiquinone
pool after complexes I and II. METTL20/ETFBKMT trimethylates ETFB Lys-200/Lys-203
near the recognition loop, reducing electron uptake from MCAD and GCDH.
supporting_text: it is the third major provider of electrons to the ubiquinone pool of the mitochondrial respiratory chain
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: PMC full text; directly establishes ETFB electron-transfer function,
the recognition loop, and its methylation-based regulation. Verified verbatim.
- id: PMID:27499296
title: Mitochondrial Protein Interaction Mapping Identifies Regulators of Respiratory
Chain Function.
findings:
- statement: ETFB interacts with ETFA and ETFRF1/LYRM5; LYRM5 acts as an ETF
deflavinase, removing FAD from the electron-transferring flavoprotein that
shuttles electrons to coenzyme Q.
supporting_text: LYRM5 interacts with and deflavinates
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: PMC full text; supports the ETFA/ETFRF1 interactions underlying the
IntAct protein-binding IPIs and the regulation of ETF flavination.
- id: PMID:33961781
title: Dual proteome-scale networks reveal cell-specific remodeling of the human
interactome.
findings:
- statement: Proteome-scale BioPlex AP-MS interactome; source of the IntAct-curated
ETFB interactions with ETFA and ETFRF1.
supporting_text: BioPlex 3.0, results from affinity purification
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: High-throughput interactome; supports the generic protein-binding
IPIs only (marked over-annotated).
- id: PMID:34800366
title: Quantitative high-confidence human mitochondrial proteome and its dynamics
in cellular context.
findings:
- statement: High-confidence quantitative human mitochondrial proteome; supports
mitochondrial localization of ETFB (HTP).
supporting_text: Quantitative high-confidence human mitochondrial proteome
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: HTP proteomics; corroborates mitochondrial localization at organelle
resolution.
- id: PMID:35362222
title: S1P defects cause a new entity of cataract, alopecia, oral mucosal disorder,
and psoriasis-like syndrome.
findings:
- statement: MBTPS1/S1P is a mitochondrial protein that forms a trimeric complex with
ETFA/ETFB, enhancing ETF flavination (FAD incorporation) and stabilizing the
heterodimer; loss impairs mitochondrial respiration and fatty-acid beta-oxidation.
supporting_text: protein that forms a trimeric complex with ETFA/ETFB. S1P enhances ETFA/ETFB
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: PMC full text; supports the ETFA/MBTPS1 protein-binding IPI and the
regulation of ETF stability/flavination.
- id: PMID:40205054
title: Multimodal cell maps as a foundation for structural and functional genomics.
findings:
- statement: Multimodal (AP-MS + immunofluorescence) cell map; source of the
IntAct-curated ETFB-ETFA interaction.
supporting_text: "interacting partners were identified by tandem MS (AP–MS)"
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: High-throughput cell-mapping study; supports the generic
protein-binding IPI only (marked over-annotated).
- id: PMID:7912128
title: Mutations and polymorphisms of the gene encoding the beta-subunit of the
electron transfer flavoprotein in three patients with glutaric acidemia type II.
findings:
- statement: Beta-ETF (ETFB) mutations cause glutaric acidemia type II; the R164Q
mutation reduces electron transfer activity, and wild-type beta-ETF cDNA restores
beta-oxidation flux in patient fibroblasts.
supporting_text: cDNA complements the genetic defect and restores the beta-oxidation flux to
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Abstract-only cache; establishes disease relevance and functional
requirement of ETFB for beta-oxidation flux. Verified verbatim from abstract.
- id: PMID:8504797
title: cDNA cloning and mitochondrial import of the beta-subunit of the human electron-transfer
flavoprotein.
findings:
- statement: The cloned beta-ETF (255 aa) polypeptide contains the information
necessary to reach the mitochondrial matrix via energy-dependent import, and
lacks a cleavable leader peptide; the mRNA is abundant in liver, heart, and
skeletal muscle.
supporting_text: contains the information necessary to reach the mitochondrial matrix
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Abstract-only cache; primary evidence for ETFB matrix localization.
Verified verbatim from abstract.
- id: PMID:8617498
title: 'Assignment of Etfdh, Etfb, and Etfa to chromosomes 3, 7, and 13: the mouse
homologs of genes responsible for glutaric acidemia type II in human.'
findings:
- statement: ETF (alpha/beta) is an obligatory electron acceptor for several
dehydrogenases and is located in the mitochondrial matrix; electrons are
transferred to the respiratory chain via ETFDH, and deficiency causes glutaric
acidemia type II.
supporting_text: obligatory electron acceptor for several dehydrogenases
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Abstract-only cache; supports matrix localization and obligatory
electron-acceptor role. Verified verbatim from abstract.
- id: PMID:8962055
title: Three-dimensional structure of human electron transfer flavoprotein to 2.1-A
resolution.
findings:
- statement: The 2.1-A crystal structure of human ETF shows a heterodimer of three
domains, the third contributed entirely by the beta subunit, with FAD in a cleft
between subunits; ETF functions as an electron shuttle between primary
flavoprotein dehydrogenases and ETF-ubiquinone oxidoreductase.
supporting_text: third domain is made up entirely by the beta subunit
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Abstract-only cache; structural basis for the ETF complex and the
beta-subunit domain. Verified verbatim from abstract.
- id: Reactome:R-HSA-169260
title: Reducing equivalents from beta-oxidation of fatty acids transfer to ETF
findings: []
- id: Reactome:R-HSA-169270
title: ETFDH oxidises ETF (reduced) to ETF, reduces CoQ to CoQH2
findings: []
- id: Reactome:R-HSA-8931858
title: ETFBKMT transfers 3xCH3 from 3xAdoMet to ETFB
findings: []