FBP1

UniProt ID: P09467
Organism: Homo sapiens
Review Status: COMPLETE
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Gene Description

FBP1 encodes fructose-1,6-bisphosphatase 1 (liver FBPase; EC 3.1.3.11), a cytosolic, Mg2+-dependent homotetrameric phosphatase that hydrolyses fructose 1,6-bisphosphate to fructose 6-phosphate and inorganic phosphate. This irreversible reaction bypasses the phosphofructokinase step of glycolysis and is a committed, flux-controlling step of gluconeogenesis in liver and kidney, allowing glucose to be synthesised from lactate, glycerol and gluconeogenic amino acids. The enzyme is allosterically inhibited by AMP and competitively inhibited by fructose 2,6-bisphosphate, which together coordinate it reciprocally with phosphofructokinase-1. Hepatic FBP1 is also required for tolerance of dietary fructose. In some cancer cells, notably clear cell renal carcinoma, a nuclear FBP1 pool binds the HIF-alpha inhibitory domain and represses HIF target genes independently of catalytic activity, and FBP1 is frequently silenced in tumours. Biallelic loss-of-function variants cause autosomal recessive fructose-1,6-bisphosphatase deficiency, with episodic fasting- or illness-induced hypoglycemia and lactic acidosis.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0000122 negative regulation of transcription by RNA polymerase II
IMP
PMID:25043030
Fructose-1,6-bisphosphatase opposes renal carcinoma progress...
KEEP AS NON CORE
Summary: Negative regulation of RNA polymerase II transcription (IMP, PMID:25043030): nuclear FBP1 binds the HIF inhibitory domain and represses HIF target genes.
Reason: Moonlighting, catalytic-activity-independent function reported in ccRCC cells; well supported but not the gene's core (enzymatic) role.
Supporting Evidence:
PMID:25043030
FBP1 restrains cell proliferation, glycolysis and the pentose phosphate pathway in a catalytic-activity-independent manner, by inhibiting nuclear HIF function via direct interaction with the HIF inhibitory domain.
PMID:25043030
These results suggest that FBP1 interferes with HIF function through a catalytic activity-independent mechanism.
GO:0005515 protein binding
IPI
PMID:10222032
cDNA sequence and kinetic properties of human lung fructose(...
REMOVE
Summary: IPI 'protein binding' with PFKFB1 (PMID:10222032).
Reason: Bare 'protein binding' carries no functional information about FBP1. The interaction may well be real (FBP1 is reported in large binary interactome screens), but it does not describe an activity of FBP1, and the source supports no more informative molecular function term for it. Removal does not mean the interaction is false. The cited abstract is a kinetic study reporting inhibition by fructose 2,6-bisphosphate (the PFKFB product) and AMP; it does not report physical binding to PFKFB in the abstract, so the partner cannot be verified here.
Supporting Evidence:
PMID:10222032
Like the liver isoenzyme, lung Fru(1,6)Pase is significantly less inhibited by AMP than the muscle enzyme.
GO:0005515 protein binding
IPI
PMID:16189514
Towards a proteome-scale map of the human protein-protein in...
REMOVE
Summary: IPI 'protein binding' with FXR2 (PMID:16189514).
Reason: Bare 'protein binding' carries no functional information about FBP1. The interaction may well be real (FBP1 is reported in large binary interactome screens), but it does not describe an activity of FBP1, and the source supports no more informative molecular function term for it. Removal does not mean the interaction is false.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
Catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate in the presence of divalent cations, acting as a rate-limiting enzyme in gluconeogenesis.
GO:0005515 protein binding
IPI
PMID:16275660
Identification of VCP/p97, carboxyl terminus of Hsp70-intera...
REMOVE
Summary: IPI 'protein binding' with BIN1 (PMID:16275660).
Reason: Bare 'protein binding' carries no functional information about FBP1. The interaction may well be real (FBP1 is reported in large binary interactome screens), but it does not describe an activity of FBP1, and the source supports no more informative molecular function term for it. Removal does not mean the interaction is false.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
Catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate in the presence of divalent cations, acting as a rate-limiting enzyme in gluconeogenesis.
GO:0005515 protein binding
IPI
PMID:25043030
Fructose-1,6-bisphosphatase opposes renal carcinoma progress...
REMOVE
Summary: IPI 'protein binding' with HIF1A (PMID:25043030).
Reason: Bare 'protein binding' carries no functional information about FBP1. The interaction may well be real (FBP1 is reported in large binary interactome screens), but it does not describe an activity of FBP1, and the source supports no more informative molecular function term for it. Removal does not mean the interaction is false. The functional content of this HIF interaction (FBP1 binding the HIF inhibitory domain to repress HIF target genes) is already captured more informatively by the GO:0061629 annotation from the same paper.
Supporting Evidence:
PMID:25043030
FBP1 restrains cell proliferation, glycolysis and the pentose phosphate pathway in a catalytic-activity-independent manner, by inhibiting nuclear HIF function via direct interaction with the HIF inhibitory domain.
GO:0005515 protein binding
IPI
PMID:25043030
Fructose-1,6-bisphosphatase opposes renal carcinoma progress...
REMOVE
Summary: IPI 'protein binding' with EPAS1 (HIF-2 alpha) (PMID:25043030).
Reason: Bare 'protein binding' carries no functional information about FBP1. The interaction may well be real (FBP1 is reported in large binary interactome screens), but it does not describe an activity of FBP1, and the source supports no more informative molecular function term for it. Removal does not mean the interaction is false. The functional content of this HIF interaction (FBP1 binding the HIF inhibitory domain to repress HIF target genes) is already captured more informatively by the GO:0061629 annotation from the same paper.
Supporting Evidence:
PMID:25043030
FBP1 restrains cell proliferation, glycolysis and the pentose phosphate pathway in a catalytic-activity-independent manner, by inhibiting nuclear HIF function via direct interaction with the HIF inhibitory domain.
GO:0005515 protein binding
IPI
PMID:25416956
A proteome-scale map of the human interactome network.
REMOVE
Summary: IPI 'protein binding' with FBP2 (muscle FBPase isozyme) (PMID:25416956).
Reason: Bare 'protein binding' carries no functional information about FBP1. The interaction may well be real (FBP1 is reported in large binary interactome screens), but it does not describe an activity of FBP1, and the source supports no more informative molecular function term for it. Removal does not mean the interaction is false. FBP1/FBP2 co-assembly is a hetero-oligomerisation of two FBPase isozymes, recurrently detected in yeast two-hybrid screens; its physiological significance is not established.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
SUBUNIT: Homotetramer.
GO:0005515 protein binding
IPI
PMID:25910212
Widespread macromolecular interaction perturbations in human...
REMOVE
Summary: IPI 'protein binding' with FBP2 (muscle FBPase isozyme) (PMID:25910212).
Reason: Bare 'protein binding' carries no functional information about FBP1. The interaction may well be real (FBP1 is reported in large binary interactome screens), but it does not describe an activity of FBP1, and the source supports no more informative molecular function term for it. Removal does not mean the interaction is false. FBP1/FBP2 co-assembly is a hetero-oligomerisation of two FBPase isozymes, recurrently detected in yeast two-hybrid screens; its physiological significance is not established.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
SUBUNIT: Homotetramer.
GO:0005515 protein binding
IPI
PMID:28514442
Architecture of the human interactome defines protein commun...
REMOVE
Summary: IPI 'protein binding' with FBP2 (muscle FBPase isozyme) (PMID:28514442).
Reason: Bare 'protein binding' carries no functional information about FBP1. The interaction may well be real (FBP1 is reported in large binary interactome screens), but it does not describe an activity of FBP1, and the source supports no more informative molecular function term for it. Removal does not mean the interaction is false. FBP1/FBP2 co-assembly is a hetero-oligomerisation of two FBPase isozymes, recurrently detected in yeast two-hybrid screens; its physiological significance is not established.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
SUBUNIT: Homotetramer.
GO:0005515 protein binding
IPI
PMID:31515488
Extensive disruption of protein interactions by genetic vari...
REMOVE
Summary: IPI 'protein binding' with FBP2 (muscle FBPase isozyme) (PMID:31515488).
Reason: Bare 'protein binding' carries no functional information about FBP1. The interaction may well be real (FBP1 is reported in large binary interactome screens), but it does not describe an activity of FBP1, and the source supports no more informative molecular function term for it. Removal does not mean the interaction is false. FBP1/FBP2 co-assembly is a hetero-oligomerisation of two FBPase isozymes, recurrently detected in yeast two-hybrid screens; its physiological significance is not established.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
SUBUNIT: Homotetramer.
GO:0005515 protein binding
IPI
PMID:31515488
Extensive disruption of protein interactions by genetic vari...
REMOVE
Summary: IPI 'protein binding' with FXR2 (PMID:31515488).
Reason: Bare 'protein binding' carries no functional information about FBP1. The interaction may well be real (FBP1 is reported in large binary interactome screens), but it does not describe an activity of FBP1, and the source supports no more informative molecular function term for it. Removal does not mean the interaction is false.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
Catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate in the presence of divalent cations, acting as a rate-limiting enzyme in gluconeogenesis.
GO:0005515 protein binding
IPI
PMID:32296183
A reference map of the human binary protein interactome.
REMOVE
Summary: IPI 'protein binding' with FBP2 (muscle FBPase isozyme) (PMID:32296183).
Reason: Bare 'protein binding' carries no functional information about FBP1. The interaction may well be real (FBP1 is reported in large binary interactome screens), but it does not describe an activity of FBP1, and the source supports no more informative molecular function term for it. Removal does not mean the interaction is false. FBP1/FBP2 co-assembly is a hetero-oligomerisation of two FBPase isozymes, recurrently detected in yeast two-hybrid screens; its physiological significance is not established.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
SUBUNIT: Homotetramer.
GO:0005515 protein binding
IPI
PMID:32814053
Interactome Mapping Provides a Network of Neurodegenerative ...
REMOVE
Summary: IPI 'protein binding' with HTT (PMID:32814053).
Reason: Bare 'protein binding' carries no functional information about FBP1. The interaction may well be real (FBP1 is reported in large binary interactome screens), but it does not describe an activity of FBP1, and the source supports no more informative molecular function term for it. Removal does not mean the interaction is false.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
Catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate in the presence of divalent cations, acting as a rate-limiting enzyme in gluconeogenesis.
GO:0005515 protein binding
IPI
PMID:33961781
Dual proteome-scale networks reveal cell-specific remodeling...
REMOVE
Summary: IPI 'protein binding' with FBP2 (muscle FBPase isozyme) (PMID:33961781).
Reason: Bare 'protein binding' carries no functional information about FBP1. The interaction may well be real (FBP1 is reported in large binary interactome screens), but it does not describe an activity of FBP1, and the source supports no more informative molecular function term for it. Removal does not mean the interaction is false. FBP1/FBP2 co-assembly is a hetero-oligomerisation of two FBPase isozymes, recurrently detected in yeast two-hybrid screens; its physiological significance is not established.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
SUBUNIT: Homotetramer.
GO:0005515 protein binding
IPI
PMID:8387495
Isolation of a human liver fructose-1,6-bisphosphatase cDNA ...
REMOVE
Summary: IPI 'protein binding' with PFKFB2 (PMID:8387495).
Reason: Bare 'protein binding' carries no functional information about FBP1. The interaction may well be real (FBP1 is reported in large binary interactome screens), but it does not describe an activity of FBP1, and the source supports no more informative molecular function term for it. Removal does not mean the interaction is false. The cited abstract is a kinetic study reporting inhibition by fructose 2,6-bisphosphate (the PFKFB product) and AMP; it does not report physical binding to PFKFB in the abstract, so the partner cannot be verified here.
Supporting Evidence:
PMID:8387495
the human enzyme was more sensitive to inhibition by fructose-2,6-bisphosphate (Ki = 0.3 microM) and AMP (Ki = 12 microM) than the rat liver form
GO:0005576 extracellular region
IEA
GO_REF:0000107
MARK AS OVER ANNOTATED
Summary: Extracellular region (IEA, Ensembl orthology transfer).
Reason: FBP1 is a cytosolic enzyme with no signal peptide; extracellular detection reflects exosome cargo at most and is not a site of action.
Supporting Evidence:
Reactome:R-HSA-70479
Cytosolic FBP (fructose-1,6-bisphosphatase) tetramers catalyze the physiologically irreversible hydrolysis of F1,6PP (fructose-1,6-bisphosphate) to form Fru(6)P (fructose-6-phosphate) and Pi (orthophosphate).
GO:0005634 nucleus
IMP
PMID:25043030
Fructose-1,6-bisphosphatase opposes renal carcinoma progress...
KEEP AS NON CORE
Summary: Nuclear localization (IMP, PMID:25043030): in VHL-deficient ccRCC cells a nuclear FBP1 pool co-localizes with HIF at hypoxia-response elements.
Reason: A real but context-specific nuclear pool supporting a catalytic-activity-independent repression of HIF targets; FBP1's principal site of action is the cytosol.
Supporting Evidence:
PMID:25043030
FBP1 restrains cell proliferation, glycolysis and the pentose phosphate pathway in a catalytic-activity-independent manner, by inhibiting nuclear HIF function via direct interaction with the HIF inhibitory domain.
GO:0005737 cytoplasm
IBA
GO_REF:0000033
ACCEPT
Summary: Cytoplasm localization (IBA).
Reason: Gluconeogenic FBPase acts in the cytosol, where the second part of gluconeogenesis takes place.
Supporting Evidence:
Reactome:R-HSA-70479
Cytosolic FBP (fructose-1,6-bisphosphatase) tetramers catalyze the physiologically irreversible hydrolysis of F1,6PP (fructose-1,6-bisphosphate) to form Fru(6)P (fructose-6-phosphate) and Pi (orthophosphate).
GO:0005737 cytoplasm
IDA
PMID:20096900
Novel compound heterozygous mutations in the fructose-1,6-bi...
ACCEPT
Summary: Cytoplasmic localization (IDA, PMID:20096900).
Reason: FBP1 is a soluble cytosolic enzyme; consistent with Reactome and UniProt.
Supporting Evidence:
Reactome:R-HSA-70479
Cytosolic FBP (fructose-1,6-bisphosphatase) tetramers catalyze the physiologically irreversible hydrolysis of F1,6PP (fructose-1,6-bisphosphate) to form Fru(6)P (fructose-6-phosphate) and Pi (orthophosphate).
GO:0005829 cytosol
IBA
GO_REF:0000033
ACCEPT
Summary: Cytosol localization (IBA).
Reason: Gluconeogenic FBPase acts in the cytosol, where the second part of gluconeogenesis takes place.
Supporting Evidence:
Reactome:R-HSA-70479
Cytosolic FBP (fructose-1,6-bisphosphatase) tetramers catalyze the physiologically irreversible hydrolysis of F1,6PP (fructose-1,6-bisphosphate) to form Fru(6)P (fructose-6-phosphate) and Pi (orthophosphate).
GO:0005829 cytosol
TAS
Reactome:R-HSA-70479
ACCEPT
Summary: Cytosol localization (TAS).
Reason: Gluconeogenic FBPase acts in the cytosol, where the second part of gluconeogenesis takes place.
Supporting Evidence:
Reactome:R-HSA-70479
Cytosolic FBP (fructose-1,6-bisphosphatase) tetramers catalyze the physiologically irreversible hydrolysis of F1,6PP (fructose-1,6-bisphosphate) to form Fru(6)P (fructose-6-phosphate) and Pi (orthophosphate).
GO:0005829 cytosol
TAS
Reactome:R-HSA-9944719
ACCEPT
Summary: Cytosol location derived from the Reactome event in which TCF19:NuRD represses FBP1 gene expression (the cytosolic FBP1 protein is the event output).
Reason: The location of the protein product is correct (cytosol), even though the event itself concerns gene repression.
Supporting Evidence:
Reactome:R-HSA-9944719
FBP1 encodes fructose-1,6-bisphosphatase 1, a rate-limiting enzyme in gluconeogenesis
Reactome:R-HSA-70479
Cytosolic FBP (fructose-1,6-bisphosphatase) tetramers catalyze the physiologically irreversible hydrolysis of F1,6PP (fructose-1,6-bisphosphate) to form Fru(6)P (fructose-6-phosphate) and Pi (orthophosphate).
GO:0005975 carbohydrate metabolic process
IEA
GO_REF:0000002
MODIFY
Summary: Over-general InterPro-derived process term (carbohydrate metabolic process).
Reason: Correct but too general; the specific process is gluconeogenesis.
Proposed replacements: gluconeogenesis
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
Catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate in the presence of divalent cations, acting as a rate-limiting enzyme in gluconeogenesis.
GO:0006000 fructose metabolic process
IEA
GO_REF:0000117
KEEP AS NON CORE
Summary: Fructose metabolic process (IEA).
Reason: Hepatic FBP1 is required for disposal of dietary fructose carbon into glucose, and its loss causes fructose intolerance (liver-specific Fbp1 knockout mice; patients must avoid fructose). Valid but secondary to gluconeogenesis.
Supporting Evidence:
PMID:36964915
By contrast, liver-specific deletion of Fbp1 in adult mice leads to fructose intolerance, as manifested by substantial weight loss, hepatomegaly, and liver injury after exposure to a high-fructose diet.
GO:0006000 fructose metabolic process
TAS
PMID:7558035
Human fructose-1,6-bisphosphatase gene (FBP1): exon-intron o...
KEEP AS NON CORE
Summary: Fructose metabolic process (TAS).
Reason: Hepatic FBP1 is required for disposal of dietary fructose carbon into glucose, and its loss causes fructose intolerance (liver-specific Fbp1 knockout mice; patients must avoid fructose). Valid but secondary to gluconeogenesis.
Supporting Evidence:
PMID:7558035
Fructose-1,6-bisphosphatase (EC 3.1.3.11) is a key regulatory enzyme of gluconeogenesis that catalyzes the hydrolysis of fructose-1,6-bisphosphate to generate fructose-6-phosphate and inorganic phosphate.
GO:0006002 fructose 6-phosphate metabolic process
IDA
PMID:16442285
Benzoxazole benzenesulfonamides are novel allosteric inhibit...
KEEP AS NON CORE
Summary: Fructose 6-phosphate metabolic process (IDA).
Reason: Fructose 6-phosphate is the product of the FBPase reaction; accurate but less informative than gluconeogenesis.
Supporting Evidence:
PMID:16442285
We have identified benzoxazole benzenesulfonamide 1 as a novel allosteric inhibitor of fructose-1,6-bisphosphatase (FBPase-1).
GO:0006002 fructose 6-phosphate metabolic process
IDA
PMID:8387495
Isolation of a human liver fructose-1,6-bisphosphatase cDNA ...
KEEP AS NON CORE
Summary: Fructose 6-phosphate metabolic process (IDA).
Reason: Fructose 6-phosphate is the product of the FBPase reaction; accurate but less informative than gluconeogenesis.
Supporting Evidence:
PMID:8387495
Approximately 50% of the expressed human fructose-1,6-bisphosphatase was soluble and enzymatically active
GO:0006002 fructose 6-phosphate metabolic process
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: Fructose 6-phosphate metabolic process (IEA).
Reason: Fructose 6-phosphate is the product of the FBPase reaction; accurate but less informative than gluconeogenesis.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
Catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate in the presence of divalent cations, acting as a rate-limiting enzyme in gluconeogenesis.
GO:0006094 gluconeogenesis
IBA
GO_REF:0000033
ACCEPT
Summary: Core process. Phylogenetically inferred participation in gluconeogenesis.
Reason: FBP1 catalyses a committed, irreversible step of gluconeogenesis (fructose 1,6-bisphosphate to fructose 6-phosphate); the enzyme does part of the work of the pathway.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
Catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate in the presence of divalent cations, acting as a rate-limiting enzyme in gluconeogenesis.
PMID:7558035
Fructose-1,6-bisphosphatase (EC 3.1.3.11) is a key regulatory enzyme of gluconeogenesis that catalyzes the hydrolysis of fructose-1,6-bisphosphate to generate fructose-6-phosphate and inorganic phosphate.
GO:0006094 gluconeogenesis
IEA
GO_REF:0000120
ACCEPT
Summary: Core process. Electronic (UniPathway) annotation to gluconeogenesis.
Reason: FBP1 catalyses a committed, irreversible step of gluconeogenesis (fructose 1,6-bisphosphate to fructose 6-phosphate); the enzyme does part of the work of the pathway.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
Catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate in the presence of divalent cations, acting as a rate-limiting enzyme in gluconeogenesis.
PMID:7558035
Fructose-1,6-bisphosphatase (EC 3.1.3.11) is a key regulatory enzyme of gluconeogenesis that catalyzes the hydrolysis of fructose-1,6-bisphosphate to generate fructose-6-phosphate and inorganic phosphate.
GO:0006094 gluconeogenesis
IMP
PMID:19259699
Novel FBP1 gene mutations in Arab patients with fructose-1,6...
ACCEPT
Summary: Core process. Patient FBP1 loss-of-function variants (PMID:19259699) cause impaired gluconeogenesis.
Reason: FBP1 catalyses the irreversible fructose-1,6-bisphosphatase step of gluconeogenesis; its loss blocks the pathway, which is the basis of FBPase deficiency.
Supporting Evidence:
PMID:19259699
Deficiency of fructose-1,6-bisphosphatase (FBP) results in impaired gluconeogenesis, which is characterized by episodes of hyperventilation, apnea, hypoglycemia, and metabolic and lactic acidosis.
GO:0006094 gluconeogenesis
IMP
PMID:20096900
Novel compound heterozygous mutations in the fructose-1,6-bi...
ACCEPT
Summary: Core process. Patient FBP1 loss-of-function variants (PMID:20096900) cause impaired gluconeogenesis.
Reason: FBP1 catalyses the irreversible fructose-1,6-bisphosphatase step of gluconeogenesis; its loss blocks the pathway, which is the basis of FBPase deficiency.
Supporting Evidence:
PMID:20096900
Fructose-1,6-bisphosphatase (FBPase) deficiency is an autosomal recessive disorder caused by a mutation of the fructose-1,6-bisphosphatase 1 (FBP1) gene and results in impaired gluconeogenesis.
GO:0006094 gluconeogenesis
ISS
GO_REF:0000024
ACCEPT
Summary: Core process. Sequence-similarity transfer from rat FBP1.
Reason: FBP1 catalyses a committed, irreversible step of gluconeogenesis (fructose 1,6-bisphosphate to fructose 6-phosphate); the enzyme does part of the work of the pathway.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
Catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate in the presence of divalent cations, acting as a rate-limiting enzyme in gluconeogenesis.
PMID:7558035
Fructose-1,6-bisphosphatase (EC 3.1.3.11) is a key regulatory enzyme of gluconeogenesis that catalyzes the hydrolysis of fructose-1,6-bisphosphate to generate fructose-6-phosphate and inorganic phosphate.
GO:0006094 gluconeogenesis
TAS
Reactome:R-HSA-70263
ACCEPT
Summary: Core process. Reactome gluconeogenesis pathway.
Reason: FBP1 catalyses a committed, irreversible step of gluconeogenesis (fructose 1,6-bisphosphate to fructose 6-phosphate); the enzyme does part of the work of the pathway.
Supporting Evidence:
Reactome:R-HSA-70263
Hydrolysis of fructose 1,6 bisphosphate to fructose 6 phosphate is catalyzed by fructose 1,6 bisphosphatase
PMID:7558035
Fructose-1,6-bisphosphatase (EC 3.1.3.11) is a key regulatory enzyme of gluconeogenesis that catalyzes the hydrolysis of fructose-1,6-bisphosphate to generate fructose-6-phosphate and inorganic phosphate.
GO:0006111 regulation of gluconeogenesis
IMP
PMID:7558035
Human fructose-1,6-bisphosphatase gene (FBP1): exon-intron o...
MARK AS OVER ANNOTATED
Summary: IMP annotation to regulation of gluconeogenesis from the FBP1 gene-structure/mutation-screening paper.
Reason: FBP1 is described as a 'key regulatory enzyme' in the pathway sense (an allosterically controlled, flux-controlling step), which GO captures as direct participation in gluconeogenesis plus its own catalytic activity, not as regulation of the process by a separate regulator. The cached abstract also reports no causal mutation in the subjects screened.
Supporting Evidence:
PMID:7558035
Fructose-1,6-bisphosphatase (EC 3.1.3.11) is a key regulatory enzyme of gluconeogenesis that catalyzes the hydrolysis of fructose-1,6-bisphosphate to generate fructose-6-phosphate and inorganic phosphate.
GO:0016208 AMP binding
IDA
PMID:10222032
cDNA sequence and kinetic properties of human lung fructose(...
KEEP AS NON CORE
Summary: AMP binding (IDA, PMID:10222032): AMP is the physiological allosteric inhibitor of FBPase, binding a site distinct from the active site.
Reason: Allosteric AMP binding is a well-established regulatory property of FBP1 (UniProt; inhibitor studies exploit the AMP site), but it regulates rather than constitutes the catalytic function.
Supporting Evidence:
PMID:10222032
Like the liver isoenzyme, lung Fru(1,6)Pase is significantly less inhibited by AMP than the muscle enzyme.
file:human/FBP1/FBP1-uniprot.txt
AMP acts as an allosteric inhibitor.
GO:0016208 AMP binding
IDA
PMID:18650089
Allosteric FBPase inhibitors gain 10(5) times in potency whe...
KEEP AS NON CORE
Summary: AMP binding (IDA, PMID:18650089): AMP is the physiological allosteric inhibitor of FBPase, binding a site distinct from the active site.
Reason: Allosteric AMP binding is a well-established regulatory property of FBP1 (UniProt; inhibitor studies exploit the AMP site), but it regulates rather than constitutes the catalytic function.
Supporting Evidence:
PMID:18650089
In its active form FBPase exists as a homotetramer and is allosterically regulated by AMP.
GO:0016208 AMP binding
IDA
PMID:8387495
Isolation of a human liver fructose-1,6-bisphosphatase cDNA ...
KEEP AS NON CORE
Summary: AMP binding (IDA, PMID:8387495): AMP is the physiological allosteric inhibitor of FBPase, binding a site distinct from the active site.
Reason: Allosteric AMP binding is a well-established regulatory property of FBP1 (UniProt; inhibitor studies exploit the AMP site), but it regulates rather than constitutes the catalytic function.
Supporting Evidence:
PMID:8387495
the human enzyme was more sensitive to inhibition by fructose-2,6-bisphosphate (Ki = 0.3 microM) and AMP (Ki = 12 microM) than the rat liver form
GO:0016791 phosphatase activity
IEA
GO_REF:0000002
MODIFY
Summary: Over-general InterPro-derived hydrolase term (GO:0016791).
Reason: Correct but uninformative parent of the specific activity.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
Catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate in the presence of divalent cations, acting as a rate-limiting enzyme in gluconeogenesis.
GO:0030308 negative regulation of cell growth
IDA
PMID:19881551
Warburg effect revisited: an epigenetic link between glycoly...
MARK AS OVER ANNOTATED
Summary: Negative regulation of cell growth (IDA, PMID:19881551): restoring FBP1 expression reduces growth of gastric cancer cells.
Reason: Re-expression in transformed cells that have epigenetically silenced FBP1 shows a tumour-suppressive effect, but this is an indirect metabolic consequence rather than a process FBP1 regulates in normal physiology.
Supporting Evidence:
PMID:19881551
Restoration of FBP1 expression reduced growth and glycolysis in gastric cancer cells.
GO:0031667 response to nutrient levels
IEA
GO_REF:0000107
MARK AS OVER ANNOTATED
Summary: response to nutrient levels (IEA, Ensembl orthology transfer from rodent expression studies).
Reason: FBP1 expression is hormonally and nutritionally regulated (induced by fasting/glucagon-cAMP, repressed by insulin), but being transcriptionally regulated by a signal is not participation in the cellular response to it.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
Catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate in the presence of divalent cations, acting as a rate-limiting enzyme in gluconeogenesis.
GO:0032869 cellular response to insulin stimulus
IEA
GO_REF:0000107
MARK AS OVER ANNOTATED
Summary: cellular response to insulin stimulus (IEA, Ensembl orthology transfer from rodent expression studies).
Reason: FBP1 expression is hormonally and nutritionally regulated (induced by fasting/glucagon-cAMP, repressed by insulin), but being transcriptionally regulated by a signal is not participation in the cellular response to it.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
Catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate in the presence of divalent cations, acting as a rate-limiting enzyme in gluconeogenesis.
GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity
EXP
PMID:17350621
Glu 69 is essential for the high sensitivity of muscle fruct...
ACCEPT
Summary: Core molecular function: hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate and phosphate (EC 3.1.3.11). EXP annotation from PMID:17350621, whose abstract concerns the muscle isozyme (FBP2) and calcium inhibition; UniProt nevertheless cites it for FBP1 catalytic activity and kinetic constants, presumably with the liver enzyme as comparator in the full text.
Reason: The activity is unequivocally correct for FBP1 and is independently established by recombinant expression of the human liver enzyme (PMID:8387495). The curator saw the full text, which is not cached; deferring to the annotation.
Supporting Evidence:
PMID:17350621
Muscle fructose-1,6-bisphosphatase (FBPase) is highly sensitive toward inhibition by AMP and calcium ions.
PMID:8387495
Approximately 50% of the expressed human fructose-1,6-bisphosphatase was soluble and enzymatically active
GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity
IBA
GO_REF:0000033
ACCEPT
Summary: Core molecular function: hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate and phosphate (EC 3.1.3.11). Phylogenetic inference from the FBPase class 1 family.
Reason: Catalytic activity is conserved across the class 1 FBPase family and is experimentally established for the human enzyme itself (the target appears among the IBD sources, as expected).
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
Catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate in the presence of divalent cations, acting as a rate-limiting enzyme in gluconeogenesis.
PMID:8387495
Approximately 50% of the expressed human fructose-1,6-bisphosphatase was soluble and enzymatically active
GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity
IDA
PMID:16442285
Benzoxazole benzenesulfonamides are novel allosteric inhibit...
ACCEPT
Summary: Core molecular function: hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate and phosphate (EC 3.1.3.11). Activity measured on purified human FBPase in allosteric-inhibitor studies (PMID:16442285).
Reason: Inhibitor studies necessarily assay the catalytic activity of the human enzyme.
Supporting Evidence:
PMID:16442285
We have identified benzoxazole benzenesulfonamide 1 as a novel allosteric inhibitor of fructose-1,6-bisphosphatase (FBPase-1).
GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity
IDA
PMID:18650089
Allosteric FBPase inhibitors gain 10(5) times in potency whe...
ACCEPT
Summary: Core molecular function: hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate and phosphate (EC 3.1.3.11). Activity measured on purified human FBPase in allosteric-inhibitor studies (PMID:18650089).
Reason: Inhibitor studies necessarily assay the catalytic activity of the human enzyme.
Supporting Evidence:
PMID:18650089
Human fructose-1,6-bisphosphatase (FBPase, EC 3.1.3.11) is a key gluconeogenic enzyme, responsible for the hydrolysis of fructose-1,6-bisphosphate to fructose-6-phosphate
GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity
IDA
PMID:8387495
Isolation of a human liver fructose-1,6-bisphosphatase cDNA ...
ACCEPT
Summary: Core molecular function: hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate and phosphate (EC 3.1.3.11). Recombinant human liver FBPase expressed in E. coli is enzymatically active; Asp118/Asp121 mutants lose activity.
Reason: Direct biochemical demonstration of the activity of the human enzyme.
Supporting Evidence:
PMID:8387495
Approximately 50% of the expressed human fructose-1,6-bisphosphatase was soluble and enzymatically active
PMID:8387495
Crystallographic analyses have suggested that Asp-118 and Asp-121 are catalytic residues located in a negatively charged pocket that binds divalent metal cations.
GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity
IEA
GO_REF:0000120
ACCEPT
Summary: Core molecular function: hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate and phosphate (EC 3.1.3.11). Electronic (EC mapping) annotation.
Reason: Correct; matches EC 3.1.3.11 assigned from characterization of the human enzyme.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
Catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate in the presence of divalent cations, acting as a rate-limiting enzyme in gluconeogenesis.
GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity
IMP
PMID:19259699
Novel FBP1 gene mutations in Arab patients with fructose-1,6...
ACCEPT
Summary: Core molecular function: hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate and phosphate (EC 3.1.3.11). IMP from disease-causing FBP1 variants in Arab FBPase-deficient patients.
Reason: Loss-of-function patient variants confirm that FBP1 carries the FBPase activity whose loss causes the disease.
Supporting Evidence:
PMID:19259699
Deficiency of fructose-1,6-bisphosphatase (FBP) results in impaired gluconeogenesis, which is characterized by episodes of hyperventilation, apnea, hypoglycemia, and metabolic and lactic acidosis.
GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity
IMP
PMID:20096900
Novel compound heterozygous mutations in the fructose-1,6-bi...
ACCEPT
Summary: Core molecular function: hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate and phosphate (EC 3.1.3.11). IMP: patient G164S and 838delT FBP1 proteins are enzymatically inactive in COS-7 cells.
Reason: Direct mutational evidence for the activity.
Supporting Evidence:
PMID:20096900
Transient transfection studies using COS-7 cells demonstrated that FBPase proteins with G164S or 838delT mutations were enzymatically inactive.
GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity
IMP
PMID:7558035
Human fructose-1,6-bisphosphatase gene (FBP1): exon-intron o...
ACCEPT
Summary: Core molecular function: hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate and phosphate (EC 3.1.3.11). IMP from a gene-structure and mutation-screening paper; the abstract reports that no causal coding mutation was found in the two subjects screened.
Reason: The cached abstract does not show the mutant phenotype the IMP rests on, but the function is unequivocally correct for FBP1 and the curator had the full text; deferring.
Supporting Evidence:
PMID:7558035
Fructose-1,6-bisphosphatase (EC 3.1.3.11) is a key regulatory enzyme of gluconeogenesis that catalyzes the hydrolysis of fructose-1,6-bisphosphate to generate fructose-6-phosphate and inorganic phosphate.
GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity
TAS
Reactome:R-HSA-70479
ACCEPT
Summary: Core molecular function: hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate and phosphate (EC 3.1.3.11). Reactome: cytosolic FBP tetramers hydrolyze F1,6PP.
Reason: Reactome correctly describes the gluconeogenic FBPase reaction.
Supporting Evidence:
Reactome:R-HSA-70479
Cytosolic FBP (fructose-1,6-bisphosphatase) tetramers catalyze the physiologically irreversible hydrolysis of F1,6PP (fructose-1,6-bisphosphate) to form Fru(6)P (fructose-6-phosphate) and Pi (orthophosphate).
GO:0042578 phosphoric ester hydrolase activity
IEA
GO_REF:0000002
MODIFY
Summary: Over-general InterPro-derived hydrolase term (GO:0042578).
Reason: Correct but uninformative parent of the specific activity.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
Catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate in the presence of divalent cations, acting as a rate-limiting enzyme in gluconeogenesis.
GO:0042802 identical protein binding
IPI
PMID:16169070
A human protein-protein interaction network: a resource for ...
KEEP AS NON CORE
Summary: Self-interaction (PMID:16169070) reflecting the FBP1 homotetramer.
Reason: FBPase is an obligate homotetramer whose allosteric R/T transition depends on the tetrameric assembly; the self-interaction is real and structurally established but is a structural property supporting the catalytic function rather than a distinct activity.
Supporting Evidence:
PMID:18650089
In its active form FBPase exists as a homotetramer and is allosterically regulated by AMP.
file:human/FBP1/FBP1-uniprot.txt
SUBUNIT: Homotetramer.
GO:0042802 identical protein binding
IPI
PMID:16189514
Towards a proteome-scale map of the human protein-protein in...
KEEP AS NON CORE
Summary: Self-interaction (PMID:16189514) reflecting the FBP1 homotetramer.
Reason: FBPase is an obligate homotetramer whose allosteric R/T transition depends on the tetrameric assembly; the self-interaction is real and structurally established but is a structural property supporting the catalytic function rather than a distinct activity.
Supporting Evidence:
PMID:18650089
In its active form FBPase exists as a homotetramer and is allosterically regulated by AMP.
file:human/FBP1/FBP1-uniprot.txt
SUBUNIT: Homotetramer.
GO:0042802 identical protein binding
IPI
PMID:16442285
Benzoxazole benzenesulfonamides are novel allosteric inhibit...
KEEP AS NON CORE
Summary: Self-interaction (PMID:16442285) reflecting the FBP1 homotetramer.
Reason: FBPase is an obligate homotetramer whose allosteric R/T transition depends on the tetrameric assembly; the self-interaction is real and structurally established but is a structural property supporting the catalytic function rather than a distinct activity.
Supporting Evidence:
PMID:18650089
In its active form FBPase exists as a homotetramer and is allosterically regulated by AMP.
file:human/FBP1/FBP1-uniprot.txt
SUBUNIT: Homotetramer.
GO:0042802 identical protein binding
IPI
PMID:18650089
Allosteric FBPase inhibitors gain 10(5) times in potency whe...
KEEP AS NON CORE
Summary: Self-interaction (PMID:18650089) reflecting the FBP1 homotetramer.
Reason: FBPase is an obligate homotetramer whose allosteric R/T transition depends on the tetrameric assembly; the self-interaction is real and structurally established but is a structural property supporting the catalytic function rather than a distinct activity.
Supporting Evidence:
PMID:18650089
In its active form FBPase exists as a homotetramer and is allosterically regulated by AMP.
file:human/FBP1/FBP1-uniprot.txt
SUBUNIT: Homotetramer.
GO:0042802 identical protein binding
IPI
PMID:21516116
Next-generation sequencing to generate interactome datasets.
KEEP AS NON CORE
Summary: Self-interaction (PMID:21516116) reflecting the FBP1 homotetramer.
Reason: FBPase is an obligate homotetramer whose allosteric R/T transition depends on the tetrameric assembly; the self-interaction is real and structurally established but is a structural property supporting the catalytic function rather than a distinct activity.
Supporting Evidence:
PMID:18650089
In its active form FBPase exists as a homotetramer and is allosterically regulated by AMP.
file:human/FBP1/FBP1-uniprot.txt
SUBUNIT: Homotetramer.
GO:0042802 identical protein binding
IPI
PMID:25416956
A proteome-scale map of the human interactome network.
KEEP AS NON CORE
Summary: Self-interaction (PMID:25416956) reflecting the FBP1 homotetramer.
Reason: FBPase is an obligate homotetramer whose allosteric R/T transition depends on the tetrameric assembly; the self-interaction is real and structurally established but is a structural property supporting the catalytic function rather than a distinct activity.
Supporting Evidence:
PMID:18650089
In its active form FBPase exists as a homotetramer and is allosterically regulated by AMP.
file:human/FBP1/FBP1-uniprot.txt
SUBUNIT: Homotetramer.
GO:0042802 identical protein binding
IPI
PMID:25502805
A massively parallel pipeline to clone DNA variants and exam...
KEEP AS NON CORE
Summary: Self-interaction (PMID:25502805) reflecting the FBP1 homotetramer.
Reason: FBPase is an obligate homotetramer whose allosteric R/T transition depends on the tetrameric assembly; the self-interaction is real and structurally established but is a structural property supporting the catalytic function rather than a distinct activity.
Supporting Evidence:
PMID:18650089
In its active form FBPase exists as a homotetramer and is allosterically regulated by AMP.
file:human/FBP1/FBP1-uniprot.txt
SUBUNIT: Homotetramer.
GO:0042802 identical protein binding
IPI
PMID:25910212
Widespread macromolecular interaction perturbations in human...
KEEP AS NON CORE
Summary: Self-interaction (PMID:25910212) reflecting the FBP1 homotetramer.
Reason: FBPase is an obligate homotetramer whose allosteric R/T transition depends on the tetrameric assembly; the self-interaction is real and structurally established but is a structural property supporting the catalytic function rather than a distinct activity.
Supporting Evidence:
PMID:18650089
In its active form FBPase exists as a homotetramer and is allosterically regulated by AMP.
file:human/FBP1/FBP1-uniprot.txt
SUBUNIT: Homotetramer.
GO:0042802 identical protein binding
IPI
PMID:31515488
Extensive disruption of protein interactions by genetic vari...
KEEP AS NON CORE
Summary: Self-interaction (PMID:31515488) reflecting the FBP1 homotetramer.
Reason: FBPase is an obligate homotetramer whose allosteric R/T transition depends on the tetrameric assembly; the self-interaction is real and structurally established but is a structural property supporting the catalytic function rather than a distinct activity.
Supporting Evidence:
PMID:18650089
In its active form FBPase exists as a homotetramer and is allosterically regulated by AMP.
file:human/FBP1/FBP1-uniprot.txt
SUBUNIT: Homotetramer.
GO:0042802 identical protein binding
IPI
PMID:32296183
A reference map of the human binary protein interactome.
KEEP AS NON CORE
Summary: Self-interaction (PMID:32296183) reflecting the FBP1 homotetramer.
Reason: FBPase is an obligate homotetramer whose allosteric R/T transition depends on the tetrameric assembly; the self-interaction is real and structurally established but is a structural property supporting the catalytic function rather than a distinct activity.
Supporting Evidence:
PMID:18650089
In its active form FBPase exists as a homotetramer and is allosterically regulated by AMP.
file:human/FBP1/FBP1-uniprot.txt
SUBUNIT: Homotetramer.
GO:0045820 negative regulation of glycolysis
IDA
PMID:19881551
Warburg effect revisited: an epigenetic link between glycoly...
KEEP AS NON CORE
Summary: Negative regulation of glycolysis (IDA, PMID:19881551).
Reason: FBP1 opposes glycolytic flux, partly because it catalyses the reverse of the phosphofructokinase step (futile-cycle direction) and, in ccRCC, partly through HIF repression. Real in the cancer-cell settings studied, but secondary to the gluconeogenic role.
Supporting Evidence:
PMID:19881551
Fructose-1,6-bisphosphatase-1 (FBP1), which functions to antagonize glycolysis was downregulated through NF-kappaB pathway in Ras-transformed NIH3T3 cells.
GO:0045820 negative regulation of glycolysis
IMP
PMID:25043030
Fructose-1,6-bisphosphatase opposes renal carcinoma progress...
KEEP AS NON CORE
Summary: Negative regulation of glycolysis (IMP, PMID:25043030).
Reason: FBP1 opposes glycolytic flux, partly because it catalyses the reverse of the phosphofructokinase step (futile-cycle direction) and, in ccRCC, partly through HIF repression. Real in the cancer-cell settings studied, but secondary to the gluconeogenic role.
Supporting Evidence:
PMID:25043030
First, FBP1 antagonizes glycolytic flux in renal tubular epithelial cells, the presumptive ccRCC cell of origin, thereby inhibiting a potential Warburg effect.
GO:0046580 negative regulation of Ras protein signal transduction
IDA
PMID:19881551
Warburg effect revisited: an epigenetic link between glycoly...
MARK AS OVER ANNOTATED
Summary: Negative regulation of Ras protein signal transduction (IDA, PMID:19881551).
Reason: The abstract reports that Ras, via NF-kappaB, downregulates FBP1 (FBP1 is downstream of, and repressed by, Ras signalling) and that FBP1 restoration suppresses anchorage-independent growth of Ras-transformed cells. That supports FBP1 opposing a Ras-driven phenotype, not FBP1 regulating Ras signal transduction itself.
Supporting Evidence:
PMID:19881551
Fructose-1,6-bisphosphatase-1 (FBP1), which functions to antagonize glycolysis was downregulated through NF-kappaB pathway in Ras-transformed NIH3T3 cells.
GO:0046872 metal ion binding
IMP
PMID:8387495
Isolation of a human liver fructose-1,6-bisphosphatase cDNA ...
KEEP AS NON CORE
Summary: Metal ion binding (IMP, PMID:8387495): Asp118/Asp121 form a divalent-cation pocket required for catalysis.
Reason: Correct (FBPase binds three Mg2+ per subunit) and part of the catalytic mechanism; a more specific term would be magnesium ion binding (GO:0000287), but the general term is accurate.
Supporting Evidence:
PMID:8387495
Crystallographic analyses have suggested that Asp-118 and Asp-121 are catalytic residues located in a negatively charged pocket that binds divalent metal cations.
file:human/FBP1/FBP1-uniprot.txt
Note=Binds 3 Mg(2+) ions per subunit.
GO:0048029 monosaccharide binding
IEA
GO_REF:0000107
MARK AS OVER ANNOTATED
Summary: Monosaccharide binding (IEA), transferred from rat FBP1.
Reason: Binding of the sugar-phosphate substrate and of fructose 2,6-bisphosphate is intrinsic to the catalytic/regulatory function and is better represented by the catalytic activity term; 'monosaccharide binding' adds no information.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
Catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate in the presence of divalent cations, acting as a rate-limiting enzyme in gluconeogenesis.
PMID:8387495
the human enzyme was more sensitive to inhibition by fructose-2,6-bisphosphate (Ki = 0.3 microM) and AMP (Ki = 12 microM) than the rat liver form
GO:0048029 monosaccharide binding
ISS
GO_REF:0000024
MARK AS OVER ANNOTATED
Summary: Monosaccharide binding (ISS), transferred from rat FBP1.
Reason: Binding of the sugar-phosphate substrate and of fructose 2,6-bisphosphate is intrinsic to the catalytic/regulatory function and is better represented by the catalytic activity term; 'monosaccharide binding' adds no information.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
Catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate in the presence of divalent cations, acting as a rate-limiting enzyme in gluconeogenesis.
PMID:8387495
the human enzyme was more sensitive to inhibition by fructose-2,6-bisphosphate (Ki = 0.3 microM) and AMP (Ki = 12 microM) than the rat liver form
GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding
IMP
PMID:25043030
Fructose-1,6-bisphosphatase opposes renal carcinoma progress...
KEEP AS NON CORE
Summary: RNA polymerase II-specific DNA-binding transcription factor binding (IMP, PMID:25043030): FBP1 binds the HIF-1 alpha / HIF-2 alpha inhibitory domain.
Reason: An informative MF for the HIF interaction; context-specific moonlighting function, not the core enzymatic role.
Supporting Evidence:
PMID:25043030
FBP1 restrains cell proliferation, glycolysis and the pentose phosphate pathway in a catalytic-activity-independent manner, by inhibiting nuclear HIF function via direct interaction with the HIF inhibitory domain.
GO:0070062 extracellular exosome
HDA
PMID:19056867
Large-scale proteomics and phosphoproteomics of urinary exos...
KEEP AS NON CORE
Summary: Extracellular exosome (HDA, PMID:19056867) from proteomic surveys of urinary/prostatic exosomes.
Reason: Abundant cytosolic enzymes are routinely captured in exosome proteomes; the observation is real but has no known functional significance for FBP1.
Supporting Evidence:
Reactome:R-HSA-70479
Cytosolic FBP (fructose-1,6-bisphosphatase) tetramers catalyze the physiologically irreversible hydrolysis of F1,6PP (fructose-1,6-bisphosphate) to form Fru(6)P (fructose-6-phosphate) and Pi (orthophosphate).
GO:0070062 extracellular exosome
HDA
PMID:23533145
In-depth proteomic analyses of exosomes isolated from expres...
KEEP AS NON CORE
Summary: Extracellular exosome (HDA, PMID:23533145) from proteomic surveys of urinary/prostatic exosomes.
Reason: Abundant cytosolic enzymes are routinely captured in exosome proteomes; the observation is real but has no known functional significance for FBP1.
Supporting Evidence:
Reactome:R-HSA-70479
Cytosolic FBP (fructose-1,6-bisphosphatase) tetramers catalyze the physiologically irreversible hydrolysis of F1,6PP (fructose-1,6-bisphosphate) to form Fru(6)P (fructose-6-phosphate) and Pi (orthophosphate).
GO:0071286 cellular response to magnesium ion
IDA
PMID:10222032
cDNA sequence and kinetic properties of human lung fructose(...
MARK AS OVER ANNOTATED
Summary: Cellular response to magnesium ion (IDA, PMID:10222032), from kinetic characterization of purified lung FBPase.
Reason: Mg2+ is a catalytic cofactor of FBPase; dependence of in vitro enzyme kinetics on Mg2+ is cofactor usage, not a cellular response process.
Supporting Evidence:
PMID:10222032
Like the liver isoenzyme, lung Fru(1,6)Pase is significantly less inhibited by AMP than the muscle enzyme.
file:human/FBP1/FBP1-uniprot.txt
Note=Binds 3 Mg(2+) ions per subunit.
GO:0071320 cellular response to cAMP
IEA
GO_REF:0000107
MARK AS OVER ANNOTATED
Summary: cellular response to cAMP (IEA, Ensembl orthology transfer from rodent expression studies).
Reason: FBP1 expression is hormonally and nutritionally regulated (induced by fasting/glucagon-cAMP, repressed by insulin), but being transcriptionally regulated by a signal is not participation in the cellular response to it.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
Catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate in the presence of divalent cations, acting as a rate-limiting enzyme in gluconeogenesis.
GO:0071466 cellular response to xenobiotic stimulus
IDA
PMID:16442285
Benzoxazole benzenesulfonamides are novel allosteric inhibit...
REMOVE
Summary: Cellular response to xenobiotic stimulus (IDA, PMID:16442285): medicinal-chemistry studies of synthetic allosteric FBPase inhibitors.
Reason: Inhibition of the purified enzyme by drug candidates binding the AMP site is a pharmacological property of the protein, not a cellular response process carried out by FBP1. The cited abstracts describe in vitro inhibitor binding only.
Supporting Evidence:
PMID:16442285
We have identified benzoxazole benzenesulfonamide 1 as a novel allosteric inhibitor of fructose-1,6-bisphosphatase (FBPase-1).
GO:0071466 cellular response to xenobiotic stimulus
IDA
PMID:18650089
Allosteric FBPase inhibitors gain 10(5) times in potency whe...
REMOVE
Summary: Cellular response to xenobiotic stimulus (IDA, PMID:18650089): medicinal-chemistry studies of synthetic allosteric FBPase inhibitors.
Reason: Inhibition of the purified enzyme by drug candidates binding the AMP site is a pharmacological property of the protein, not a cellular response process carried out by FBP1. The cited abstracts describe in vitro inhibitor binding only.
Supporting Evidence:
PMID:18650089
Human fructose-1,6-bisphosphatase (FBPase, EC 3.1.3.11) is a key gluconeogenic enzyme, responsible for the hydrolysis of fructose-1,6-bisphosphate to fructose-6-phosphate
GO:0071475 cellular hyperosmotic salinity response
IEA
GO_REF:0000107
REMOVE
Summary: cellular hyperosmotic salinity response (IEA, Ensembl orthology transfer).
Reason: Propagated from expression-change observations in another species; no evidence that FBP1 participates in this response in human, and the response is unrelated to its gluconeogenic function.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
Catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate in the presence of divalent cations, acting as a rate-limiting enzyme in gluconeogenesis.
GO:0071477 cellular hypotonic salinity response
IEA
GO_REF:0000107
REMOVE
Summary: cellular hypotonic salinity response (IEA, Ensembl orthology transfer).
Reason: Propagated from expression-change observations in another species; no evidence that FBP1 participates in this response in human, and the response is unrelated to its gluconeogenic function.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
Catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate in the presence of divalent cations, acting as a rate-limiting enzyme in gluconeogenesis.
GO:0097403 cellular response to raffinose
IEA
GO_REF:0000107
REMOVE
Summary: cellular response to raffinose (IEA, Ensembl orthology transfer).
Reason: Propagated from expression-change observations in another species; no evidence that FBP1 participates in this response in human, and the response is unrelated to its gluconeogenic function.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
Catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate in the presence of divalent cations, acting as a rate-limiting enzyme in gluconeogenesis.
GO:1904628 cellular response to phorbol 13-acetate 12-myristate
IEA
GO_REF:0000107
REMOVE
Summary: cellular response to phorbol 13-acetate 12-myristate (IEA, Ensembl orthology transfer).
Reason: Propagated from expression-change observations in another species; no evidence that FBP1 participates in this response in human, and the response is unrelated to its gluconeogenic function.
Supporting Evidence:
file:human/FBP1/FBP1-uniprot.txt
Catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate in the presence of divalent cations, acting as a rate-limiting enzyme in gluconeogenesis.

Core Functions

Mg2+-dependent hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate in the cytosol, the irreversible, AMP- and fructose 2,6-bisphosphate-regulated step of gluconeogenesis in liver and kidney.

Directly Involved In:
Cellular Locations:
Supporting Evidence:
  • PMID:7558035
    Fructose-1,6-bisphosphatase (EC 3.1.3.11) is a key regulatory enzyme of gluconeogenesis that catalyzes the hydrolysis of fructose-1,6-bisphosphate to generate fructose-6-phosphate and inorganic phosphate.
  • PMID:8387495
    Approximately 50% of the expressed human fructose-1,6-bisphosphatase was soluble and enzymatically active
  • Reactome:R-HSA-70479
    Cytosolic FBP (fructose-1,6-bisphosphatase) tetramers catalyze the physiologically irreversible hydrolysis of F1,6PP (fructose-1,6-bisphosphate) to form Fru(6)P (fructose-6-phosphate) and Pi (orthophosphate).
  • PMID:20096900
    Transient transfection studies using COS-7 cells demonstrated that FBPase proteins with G164S or 838delT mutations were enzymatically inactive.

References

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Suggested Questions for Experts

Q: Is the nuclear, catalytic-activity-independent repression of HIF by FBP1 seen in ccRCC also operative in normal renal proximal tubule or hepatocytes, or only in tumour cells?

Q: Do FBP1-FBP2 hetero-oligomers, recurrently detected in binary interactome screens, form in tissues co-expressing both isozymes, and do they have distinct allosteric properties?

Suggested Experiments

Experiment: Chromatin immunoprecipitation and HIF reporter assays for FBP1 in primary human renal tubular epithelial cells under hypoxia, comparing wild-type and catalytically dead (e.g. G260R) FBP1, to test whether HIF repression is a physiological function outside cancer.

Experiment: Thermal-shift and pharmacological-chaperone screening of misfolding-class FBP1 deficiency variants to test whether residual activity can be rescued.

Deep Research

Falcon

(FBP1-deep-research-falcon.md)

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πŸ“š Additional Documentation

Notes

(FBP1-notes.md)

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πŸ“„ View Raw YAML

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