FBXL13 (F-box and leucine-rich repeat protein 13; also Dynein regulatory complex subunit 6, DRC6) is a multi-domain protein with an N-terminal region, an F-box domain, and an extensive C-terminal leucine-rich repeat (LRR) array. It has two distinct, tissue-dependent roles. As an SCF (SKP1-CUL1-F-box) E3 ubiquitin ligase substrate-recognition subunit, FBXL13 docks onto SKP1/CUL1 through its F-box domain and uses its LRRs to recruit substrates; it localizes to the centrosome (diffusely cytoplasmic with clear centrosomal enrichment), where it binds centrosomal proteins (Centrin-2, Centrin-3 via its N-terminus, CEP152, and CEP192 via its C-terminal region) and specifically targets CEP192 (notably the CEP192 isoform 3) for SCF/F-box-dependent polyubiquitination and proteasomal degradation, binding the N-terminal region of CEP192; the bound Centrins are not detectably degraded. By fine-tuning CEP192 abundance it downregulates centrosomal gamma-tubulin recruitment, modulates microtubule nucleation/regrowth, restrains centrosome overduplication, and promotes cell migration. Independently, in motile cilia and flagella FBXL13/DRC6 is a structural component of the nexin-dynein regulatory complex (N-DRC), a regulator of axonemal dynein activity and ciliary/flagellar beating; within the N-DRC its lysine-rich C-terminus contributes to the electrostatic distal link between neighbouring doublet microtubules. The ciliary role is less firmly established functionally: in mice Fbxl13/Drc6 knockouts show normal spermatogenesis, sperm morphology and motility and normal tracheal multicilia, suggesting the N-DRC role is dispensable or redundant under tested conditions. It is expressed broadly with enrichment in testis and stomach and in ciliated tissues.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
| GO:0005813 centrosome | IEA GO_REF:0000044 | ACCEPT | Summary: Electronic transfer of centrosome localization from the UniProt subcellular location, which is itself supported by experimental immunofluorescence (PMID:29348145). The centrosome is where FBXL13 acts on CEP192. Reason: Correct localization for the SCF-FBXL13 / CEP192 function; supported by the experimental study showing FBXL13 is enriched at centrosomes. Supporting Evidence: file:human/FBXL13/FBXL13-uniprot.txt Cytoplasm, cytoskeleton, microtubule organizing center, centrosome {ECO:0000269|PubMed:29348145}. PMID:29348145 FBXL13, a binding determinant of SCF (SKP1-CUL1-F-box)-family E3 ubiquitin ligases, is enriched at centrosomes |
| GO:0010824 regulation of centrosome duplication | NAS PMID:29348145 FBXL13 directs the proteolysis of CEP192 to regulate centros... | ACCEPT | Summary: FBXL13 regulates centrosome homeostasis by degrading CEP192, a key factor in centrosome duplication and microtubule nucleation. Annotation captures the centrosomal regulatory role demonstrated experimentally. Reason: Directly supported by the CEP192 degradation study; FBXL13 modulates centrosomal gamma-tubulin and microtubule arrays via CEP192 turnover. Supporting Evidence: PMID:29348145 CEP192 is a key factor in the initiation process of centrosome duplication and in the control of centrosome microtubule nucleation |
| GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | NAS PMID:33234069 The FBXL family of F-box proteins: variations on a theme. | ACCEPT | Summary: Family/ComplexPortal assignment that FBXL13 acts in SCF-dependent proteasomal degradation. For FBXL13 this is experimentally grounded by the SCF-FBXL13-mediated proteasomal degradation of CEP192. Reason: Core biological process; FBXL13 is a documented SCF substrate receptor that targets CEP192 (notably isoform 3) for proteasomal degradation in an F-box/SCF-dependent manner (CEP192 ubiquitination is lost with the FBXL13 deltaF-box mutant). Supporting Evidence: PMID:29348145 CEP192 is specifically targeted for proteasomal degradation by FBXL13 file:human/FBXL13/FBXL13-deep-research-falcon.md In vivo ubiquitylation assays show CEP192 polyubiquitylation is supported by FBXL13 WT and is impaired when FBXL13 is depleted, and also impaired with an FBXL13 ΞF-box mutant that cannot form a functional SCF complex (cannot recruit SKP1). |
| GO:0003341 cilium movement | NAS PMID:37258679 Axonemal structures reveal mechanoregulatory and disease mec... | KEEP AS NON CORE | Summary: As N-DRC subunit DRC6, FBXL13 is part of the nexin-dynein regulatory complex that regulates axonemal dynein activity and ciliary beating. ComplexPortal NAS assignment from the axoneme cryo-EM structural study. Reason: Supported by the N-DRC role; this is a distinct, tissue-specific (ciliary/flagellar) function separate from the centrosomal SCF role and not demonstrated by FBXL13-specific perturbation in this paper. Supporting Evidence: PMID:37258679 the nexinβdynein regulatory complex (N-DRC) |
| GO:0005930 axoneme | NAS PMID:37258679 Axonemal structures reveal mechanoregulatory and disease mec... | KEEP AS NON CORE | Summary: FBXL13/DRC6 is an axonemal N-DRC subunit; localization to the axoneme is consistent with the cryo-EM structure and the UniProt flagellum-axoneme annotation. Reason: Correct localization for the N-DRC/ciliary role; distinct from the core centrosomal SCF localization. Supporting Evidence: file:human/FBXL13/FBXL13-uniprot.txt Cytoplasm, cytoskeleton, flagellum axoneme {ECO:0000250|UniProtKB:A8JHD7}. |
| GO:0005931 axonemal nexin link | NAS PMID:37258679 Axonemal structures reveal mechanoregulatory and disease mec... | KEEP AS NON CORE | Summary: FBXL13/DRC6 sits at the distal tip of the N-DRC and contributes lysine-rich residues to the electrostatic link with the neighbouring doublet microtubule. Consistent with the cryo-EM structure placing DRC6 at the nexin link interface. Reason: Structurally supported component of the axonemal nexin link via the N-DRC; a ciliary/flagellar function distinct from the core centrosomal SCF role. Supporting Evidence: PMID:37258679 the termini of DRC6, DRC9 and DRC10 point an additional 26 lysine residues towards the neighbouring DMT |
| GO:0030317 flagellated sperm motility | NAS PMID:37258679 Axonemal structures reveal mechanoregulatory and disease mec... | KEEP AS NON CORE | Summary: Via its N-DRC/DRC6 role in regulating axonemal dynein, FBXL13 is implicated in flagellar/sperm motility; FBXL13 is enriched in testis/sperm. ComplexPortal NAS from the axoneme structural study. However, mouse Fbxl13/Drc6 knockouts have normal spermatogenesis, sperm morphology and motility parameters, indicating the function may be dispensable or redundant. Reason: Plausible N-DRC-associated motility role consistent with testis/sperm expression, but inferred from complex membership rather than a direct FBXL13 motility phenotype; and mouse knockout data show no overt motility/fertility defect (possible redundancy with related FBXL proteins). Distinct from the core SCF function and retained as non-core. Supporting Evidence: file:human/FBXL13/FBXL13-uniprot.txt a key regulator of ciliary/flagellar motility which maintains the alignment and integrity of the distal axoneme and regulates microtubule sliding in motile axonemes file:human/FBXL13/FBXL13-deep-research-falcon.md Fbxl13β/β mice show **no overt abnormalities**, have **normal spermatogenesis and sperm morphology**, and sperm motility/velocity parameters (VAP/VSL/VCL) are reported as not significantly different; tracheal multicilia show preserved axonemal β9+2β arrangement and normal morphology. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-8952618 | KEEP AS NON CORE | Summary: Reactome pathway-level cytosol annotation propagated across the generic CRL1/neddylation reaction set. Reason: Plausible localization for a cytosolic SCF component, but derived from generic CRL pathway membership rather than FBXL13-specific evidence; the centrosome is the functionally relevant compartment. Supporting Evidence: file:human/FBXL13/FBXL13-uniprot.txt Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-8952620 | KEEP AS NON CORE | Summary: Reactome pathway-level cytosol annotation from the generic CRL1 neddylation reaction set. Reason: Plausible but redundant generic-pathway localization; not FBXL13-specific. Supporting Evidence: file:human/FBXL13/FBXL13-uniprot.txt Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-8955241 | KEEP AS NON CORE | Summary: Reactome pathway-level cytosol annotation from the generic CRL (CAND1) reaction set. Reason: Plausible but redundant generic-pathway localization; not FBXL13-specific. Supporting Evidence: file:human/FBXL13/FBXL13-uniprot.txt Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-8955289 | KEEP AS NON CORE | Summary: Reactome pathway-level cytosol annotation from the generic CRL (COMMD/CAND1) reaction set. Reason: Plausible but redundant generic-pathway localization; not FBXL13-specific. Supporting Evidence: file:human/FBXL13/FBXL13-uniprot.txt Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-8956040 | KEEP AS NON CORE | Summary: Reactome pathway-level cytosol annotation from the generic CRL deneddylation (COP9) reaction set. Reason: Plausible but redundant generic-pathway localization; not FBXL13-specific. Supporting Evidence: file:human/FBXL13/FBXL13-uniprot.txt Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-8956200 | KEEP AS NON CORE | Summary: Reactome pathway-level cytosol annotation from the generic CRL1 (DCUN1D3) reaction set. Reason: Plausible but redundant generic-pathway localization; not FBXL13-specific. Supporting Evidence: file:human/FBXL13/FBXL13-uniprot.txt Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-983140 | KEEP AS NON CORE | Summary: Reactome pathway-level cytosol annotation from the generic ubiquitination reaction set (transfer of Ub from E2 to substrate). Reason: Plausible but redundant generic-pathway localization; not FBXL13-specific. Supporting Evidence: file:human/FBXL13/FBXL13-uniprot.txt Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-983147 | KEEP AS NON CORE | Summary: Reactome pathway-level cytosol annotation from the generic ubiquitination reaction set (release of E3 from substrate). Reason: Plausible but redundant generic-pathway localization; not FBXL13-specific. Supporting Evidence: file:human/FBXL13/FBXL13-uniprot.txt Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-983156 | KEEP AS NON CORE | Summary: Reactome pathway-level cytosol annotation from the generic ubiquitination reaction set (polyubiquitination of substrate). Reason: Plausible but redundant generic-pathway localization; not FBXL13-specific. Supporting Evidence: file:human/FBXL13/FBXL13-uniprot.txt Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-983157 | KEEP AS NON CORE | Summary: Reactome pathway-level cytosol annotation from the generic ubiquitination reaction set (interaction of E3 with substrate and E2-Ub). Reason: Plausible but redundant generic-pathway localization; not FBXL13-specific. Supporting Evidence: file:human/FBXL13/FBXL13-uniprot.txt Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. |
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Download this section (compressed HTML)Q: How are the two FBXL13 functions (centrosomal SCF-mediated CEP192 degradation versus structural N-DRC subunit in the axoneme) partitioned between tissues and isoforms?
Q: Does FBXL13 have ubiquitin-ligase substrates beyond CEP192 at the centrosome, and is its catalytic SCF activity required for any aspect of its ciliary role?
Experiment: Reconstitute SCF-FBXL13 (SKP1-CUL1-RBX1-FBXL13) in vitro and assay ubiquitination of CEP192 (and candidate centrosomal substrates) by an LRR-binding-deficient mutant to map substrate determinants.
Experiment: Generate FBXL13/DRC6 knockout in ciliated cells and motile-cilia models to test effects on N-DRC assembly, axonemal beat waveform and sperm/ciliary motility, separating the structural role from the SCF role.
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