FBXL13

UniProt ID: Q8NEE6
Organism: Homo sapiens
Review Status: COMPLETE
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Gene Description

FBXL13 (F-box and leucine-rich repeat protein 13; also Dynein regulatory complex subunit 6, DRC6) is a multi-domain protein with an N-terminal region, an F-box domain, and an extensive C-terminal leucine-rich repeat (LRR) array. It has two distinct, tissue-dependent roles. As an SCF (SKP1-CUL1-F-box) E3 ubiquitin ligase substrate-recognition subunit, FBXL13 docks onto SKP1/CUL1 through its F-box domain and uses its LRRs to recruit substrates; it localizes to the centrosome (diffusely cytoplasmic with clear centrosomal enrichment), where it binds centrosomal proteins (Centrin-2, Centrin-3 via its N-terminus, CEP152, and CEP192 via its C-terminal region) and specifically targets CEP192 (notably the CEP192 isoform 3) for SCF/F-box-dependent polyubiquitination and proteasomal degradation, binding the N-terminal region of CEP192; the bound Centrins are not detectably degraded. By fine-tuning CEP192 abundance it downregulates centrosomal gamma-tubulin recruitment, modulates microtubule nucleation/regrowth, restrains centrosome overduplication, and promotes cell migration. Independently, in motile cilia and flagella FBXL13/DRC6 is a structural component of the nexin-dynein regulatory complex (N-DRC), a regulator of axonemal dynein activity and ciliary/flagellar beating; within the N-DRC its lysine-rich C-terminus contributes to the electrostatic distal link between neighbouring doublet microtubules. The ciliary role is less firmly established functionally: in mice Fbxl13/Drc6 knockouts show normal spermatogenesis, sperm morphology and motility and normal tracheal multicilia, suggesting the N-DRC role is dispensable or redundant under tested conditions. It is expressed broadly with enrichment in testis and stomach and in ciliated tissues.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0005813 centrosome
IEA
GO_REF:0000044
ACCEPT
Summary: Electronic transfer of centrosome localization from the UniProt subcellular location, which is itself supported by experimental immunofluorescence (PMID:29348145). The centrosome is where FBXL13 acts on CEP192.
Reason: Correct localization for the SCF-FBXL13 / CEP192 function; supported by the experimental study showing FBXL13 is enriched at centrosomes.
Supporting Evidence:
file:human/FBXL13/FBXL13-uniprot.txt
Cytoplasm, cytoskeleton, microtubule organizing center, centrosome {ECO:0000269|PubMed:29348145}.
PMID:29348145
FBXL13, a binding determinant of SCF (SKP1-CUL1-F-box)-family E3 ubiquitin ligases, is enriched at centrosomes
GO:0010824 regulation of centrosome duplication
NAS
PMID:29348145
FBXL13 directs the proteolysis of CEP192 to regulate centros...
ACCEPT
Summary: FBXL13 regulates centrosome homeostasis by degrading CEP192, a key factor in centrosome duplication and microtubule nucleation. Annotation captures the centrosomal regulatory role demonstrated experimentally.
Reason: Directly supported by the CEP192 degradation study; FBXL13 modulates centrosomal gamma-tubulin and microtubule arrays via CEP192 turnover.
Supporting Evidence:
PMID:29348145
CEP192 is a key factor in the initiation process of centrosome duplication and in the control of centrosome microtubule nucleation
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
NAS
PMID:33234069
The FBXL family of F-box proteins: variations on a theme.
ACCEPT
Summary: Family/ComplexPortal assignment that FBXL13 acts in SCF-dependent proteasomal degradation. For FBXL13 this is experimentally grounded by the SCF-FBXL13-mediated proteasomal degradation of CEP192.
Reason: Core biological process; FBXL13 is a documented SCF substrate receptor that targets CEP192 (notably isoform 3) for proteasomal degradation in an F-box/SCF-dependent manner (CEP192 ubiquitination is lost with the FBXL13 deltaF-box mutant).
Supporting Evidence:
PMID:29348145
CEP192 is specifically targeted for proteasomal degradation by FBXL13
file:human/FBXL13/FBXL13-deep-research-falcon.md
In vivo ubiquitylation assays show CEP192 polyubiquitylation is supported by FBXL13 WT and is impaired when FBXL13 is depleted, and also impaired with an FBXL13 Ξ”F-box mutant that cannot form a functional SCF complex (cannot recruit SKP1).
GO:0003341 cilium movement
NAS
PMID:37258679
Axonemal structures reveal mechanoregulatory and disease mec...
KEEP AS NON CORE
Summary: As N-DRC subunit DRC6, FBXL13 is part of the nexin-dynein regulatory complex that regulates axonemal dynein activity and ciliary beating. ComplexPortal NAS assignment from the axoneme cryo-EM structural study.
Reason: Supported by the N-DRC role; this is a distinct, tissue-specific (ciliary/flagellar) function separate from the centrosomal SCF role and not demonstrated by FBXL13-specific perturbation in this paper.
Supporting Evidence:
PMID:37258679
the nexin–dynein regulatory complex (N-DRC)
GO:0005930 axoneme
NAS
PMID:37258679
Axonemal structures reveal mechanoregulatory and disease mec...
KEEP AS NON CORE
Summary: FBXL13/DRC6 is an axonemal N-DRC subunit; localization to the axoneme is consistent with the cryo-EM structure and the UniProt flagellum-axoneme annotation.
Reason: Correct localization for the N-DRC/ciliary role; distinct from the core centrosomal SCF localization.
Supporting Evidence:
file:human/FBXL13/FBXL13-uniprot.txt
Cytoplasm, cytoskeleton, flagellum axoneme {ECO:0000250|UniProtKB:A8JHD7}.
GO:0005931 axonemal nexin link
NAS
PMID:37258679
Axonemal structures reveal mechanoregulatory and disease mec...
KEEP AS NON CORE
Summary: FBXL13/DRC6 sits at the distal tip of the N-DRC and contributes lysine-rich residues to the electrostatic link with the neighbouring doublet microtubule. Consistent with the cryo-EM structure placing DRC6 at the nexin link interface.
Reason: Structurally supported component of the axonemal nexin link via the N-DRC; a ciliary/flagellar function distinct from the core centrosomal SCF role.
Supporting Evidence:
PMID:37258679
the termini of DRC6, DRC9 and DRC10 point an additional 26 lysine residues towards the neighbouring DMT
GO:0030317 flagellated sperm motility
NAS
PMID:37258679
Axonemal structures reveal mechanoregulatory and disease mec...
KEEP AS NON CORE
Summary: Via its N-DRC/DRC6 role in regulating axonemal dynein, FBXL13 is implicated in flagellar/sperm motility; FBXL13 is enriched in testis/sperm. ComplexPortal NAS from the axoneme structural study. However, mouse Fbxl13/Drc6 knockouts have normal spermatogenesis, sperm morphology and motility parameters, indicating the function may be dispensable or redundant.
Reason: Plausible N-DRC-associated motility role consistent with testis/sperm expression, but inferred from complex membership rather than a direct FBXL13 motility phenotype; and mouse knockout data show no overt motility/fertility defect (possible redundancy with related FBXL proteins). Distinct from the core SCF function and retained as non-core.
Supporting Evidence:
file:human/FBXL13/FBXL13-uniprot.txt
a key regulator of ciliary/flagellar motility which maintains the alignment and integrity of the distal axoneme and regulates microtubule sliding in motile axonemes
file:human/FBXL13/FBXL13-deep-research-falcon.md
Fbxl13βˆ’/βˆ’ mice show **no overt abnormalities**, have **normal spermatogenesis and sperm morphology**, and sperm motility/velocity parameters (VAP/VSL/VCL) are reported as not significantly different; tracheal multicilia show preserved axonemal β€˜9+2’ arrangement and normal morphology.
GO:0005829 cytosol
TAS
Reactome:R-HSA-8952618
KEEP AS NON CORE
Summary: Reactome pathway-level cytosol annotation propagated across the generic CRL1/neddylation reaction set.
Reason: Plausible localization for a cytosolic SCF component, but derived from generic CRL pathway membership rather than FBXL13-specific evidence; the centrosome is the functionally relevant compartment.
Supporting Evidence:
file:human/FBXL13/FBXL13-uniprot.txt
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.
GO:0005829 cytosol
TAS
Reactome:R-HSA-8952620
KEEP AS NON CORE
Summary: Reactome pathway-level cytosol annotation from the generic CRL1 neddylation reaction set.
Reason: Plausible but redundant generic-pathway localization; not FBXL13-specific.
Supporting Evidence:
file:human/FBXL13/FBXL13-uniprot.txt
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.
GO:0005829 cytosol
TAS
Reactome:R-HSA-8955241
KEEP AS NON CORE
Summary: Reactome pathway-level cytosol annotation from the generic CRL (CAND1) reaction set.
Reason: Plausible but redundant generic-pathway localization; not FBXL13-specific.
Supporting Evidence:
file:human/FBXL13/FBXL13-uniprot.txt
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.
GO:0005829 cytosol
TAS
Reactome:R-HSA-8955289
KEEP AS NON CORE
Summary: Reactome pathway-level cytosol annotation from the generic CRL (COMMD/CAND1) reaction set.
Reason: Plausible but redundant generic-pathway localization; not FBXL13-specific.
Supporting Evidence:
file:human/FBXL13/FBXL13-uniprot.txt
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.
GO:0005829 cytosol
TAS
Reactome:R-HSA-8956040
KEEP AS NON CORE
Summary: Reactome pathway-level cytosol annotation from the generic CRL deneddylation (COP9) reaction set.
Reason: Plausible but redundant generic-pathway localization; not FBXL13-specific.
Supporting Evidence:
file:human/FBXL13/FBXL13-uniprot.txt
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.
GO:0005829 cytosol
TAS
Reactome:R-HSA-8956200
KEEP AS NON CORE
Summary: Reactome pathway-level cytosol annotation from the generic CRL1 (DCUN1D3) reaction set.
Reason: Plausible but redundant generic-pathway localization; not FBXL13-specific.
Supporting Evidence:
file:human/FBXL13/FBXL13-uniprot.txt
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.
GO:0005829 cytosol
TAS
Reactome:R-HSA-983140
KEEP AS NON CORE
Summary: Reactome pathway-level cytosol annotation from the generic ubiquitination reaction set (transfer of Ub from E2 to substrate).
Reason: Plausible but redundant generic-pathway localization; not FBXL13-specific.
Supporting Evidence:
file:human/FBXL13/FBXL13-uniprot.txt
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.
GO:0005829 cytosol
TAS
Reactome:R-HSA-983147
KEEP AS NON CORE
Summary: Reactome pathway-level cytosol annotation from the generic ubiquitination reaction set (release of E3 from substrate).
Reason: Plausible but redundant generic-pathway localization; not FBXL13-specific.
Supporting Evidence:
file:human/FBXL13/FBXL13-uniprot.txt
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.
GO:0005829 cytosol
TAS
Reactome:R-HSA-983156
KEEP AS NON CORE
Summary: Reactome pathway-level cytosol annotation from the generic ubiquitination reaction set (polyubiquitination of substrate).
Reason: Plausible but redundant generic-pathway localization; not FBXL13-specific.
Supporting Evidence:
file:human/FBXL13/FBXL13-uniprot.txt
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.
GO:0005829 cytosol
TAS
Reactome:R-HSA-983157
KEEP AS NON CORE
Summary: Reactome pathway-level cytosol annotation from the generic ubiquitination reaction set (interaction of E3 with substrate and E2-Ub).
Reason: Plausible but redundant generic-pathway localization; not FBXL13-specific.
Supporting Evidence:
file:human/FBXL13/FBXL13-uniprot.txt
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Core Functions

Substrate-recognition subunit of an SCF (SKP1-CUL1-F-box) E3 ubiquitin ligase that localizes to the centrosome and targets CEP192 for proteasomal degradation, thereby regulating centrosomal gamma-tubulin levels, microtubule nucleation and cell migration.

Supporting Evidence:
  • PMID:29348145
    CEP192 is specifically targeted for proteasomal degradation by FBXL13

Structural subunit (DRC6) of the axonemal nexin-dynein regulatory complex (N-DRC) in motile cilia and flagella, contributing to the link between neighbouring doublet microtubules and to regulation of axonemal dynein activity and ciliary/flagellar beating.

Molecular Function:
structural molecule activity
Directly Involved In:
Cellular Locations:
Supporting Evidence:
  • PMID:37258679
    the termini of DRC6, DRC9 and DRC10 point an additional 26 lysine residues towards the neighbouring DMT

References

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Suggested Questions for Experts

Q: How are the two FBXL13 functions (centrosomal SCF-mediated CEP192 degradation versus structural N-DRC subunit in the axoneme) partitioned between tissues and isoforms?

Q: Does FBXL13 have ubiquitin-ligase substrates beyond CEP192 at the centrosome, and is its catalytic SCF activity required for any aspect of its ciliary role?

Suggested Experiments

Experiment: Reconstitute SCF-FBXL13 (SKP1-CUL1-RBX1-FBXL13) in vitro and assay ubiquitination of CEP192 (and candidate centrosomal substrates) by an LRR-binding-deficient mutant to map substrate determinants.

Experiment: Generate FBXL13/DRC6 knockout in ciliated cells and motile-cilia models to test effects on N-DRC assembly, axonemal beat waveform and sperm/ciliary motility, separating the structural role from the SCF role.

Deep Research

Falcon

(FBXL13-deep-research-falcon.md)

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πŸ“š Additional Documentation

Pn Notes

(FBXL13-pn-notes.md)

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