id: Q96IG2
gene_symbol: FBXL20
product_type: PROTEIN
status: COMPLETE
taxon:
  id: NCBITaxon:9606
  label: Homo sapiens
description: >-
  FBXL20 (F-box/LRR-repeat protein 20; FBL2; the mouse ortholog is named
  SCRAPPER) is a substrate-recognition subunit of an SCF (SKP1-CUL1-RBX1) E3
  ubiquitin ligase complex. Its F-box motif binds SKP1, linking it to the
  CUL1-RBX1 catalytic core, while its leucine-rich repeat domain provides
  substrate selectivity, directing substrate-specific polyubiquitination and
  proteasomal degradation. FBXL20 carries a C-terminal CAAX motif that is
  isoprenylated, targeting it to membranes, and its localization governs which
  substrates it engages. A well-characterized human substrate is VPS34/PIK3C3,
  the catalytic subunit of class III PI3K: FBXL20 binds VPS34 through its
  C-terminal LRR region (engaging the VPS34 C2 domain) and, downstream of DNA
  damage, promotes CDK-dependent (VPS34 Thr159) phosphodegron-gated
  ubiquitination and proteasomal degradation of VPS34. FBXL20 is itself a
  p53-inducible gene (and a miR-3151 target), so the p53 to FBXL20 to VPS34 axis
  lowers PtdIns3P output, dampening autophagy and slowing endosomal receptor
  (e.g. EGFR) degradation under genotoxic stress. FBXL20 also promotes
  ubiquitination and degradation of PR55alpha/PPP2R2A, a regulatory B subunit of
  the PP2A serine/threonine phosphatase. In the nervous system the
  SCRAPPER/FBXL20 ortholog is a membrane-associated presynaptic regulator that
  ubiquitinates the active-zone protein RIM1/RIMS1, controlling synaptic vesicle
  release and neurotransmission; accordingly the protein has documented roles at
  the presynapse and at glutamatergic synapses (largely inferred from the mouse
  ortholog). FBXL20 acts in the cytoplasm/cytosol and at membranes.
alternative_products:
- name: '1'
  id: Q96IG2-1
- name: '2'
  id: Q96IG2-2
  sequence_note: VSP_030769
existing_annotations:
- term:
    id: GO:0005737
    label: cytoplasm
  evidence_type: IEA
  original_reference_id: GO_REF:0000044
  qualifier: located_in
  review:
    summary: Electronic transfer of cytoplasmic localization from the UniProt subcellular location, consistent with a cytosolic SCF substrate receptor.
    action: ACCEPT
    reason: Correct localization for a cytosolic SCF F-box protein; consistent with the cytosolic Reactome annotations.
    supported_by:
    - reference_id: file:human/FBXL20/FBXL20-uniprot.txt
      supporting_text: 'Cytoplasm {ECO:0000250}.'
- term:
    id: GO:0098793
    label: presynapse
  evidence_type: IEA
  original_reference_id: GO_REF:0000108
  qualifier: located_in
  review:
    summary: Inter-ontology logical inference placing FBXL20 at the presynapse, consistent with the SCRAPPER ortholog's presynaptic role in regulating RIM1 and synaptic vesicle release.
    action: KEEP_AS_NON_CORE
    reason: Plausible localization inferred from the mouse SCRAPPER ortholog's presynaptic function; not directly demonstrated for the human protein, and secondary to the core SCF substrate-receptor activity.
    supported_by:
    - reference_id: file:human/FBXL20/FBXL20-uniprot.txt
      supporting_text: Role in neural transmission (By similarity).
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:27705803
  qualifier: enables
  review:
    summary: Interaction with SKP1 (P63208) from a Polycomb complexome map. Bare protein binding is uninformative.
    action: KEEP_AS_NON_CORE
    reason: Records the FBXL20-SKP1 association required for SCF assembly, but bare protein binding is uninformative per curation guidelines.
    supported_by:
    - reference_id: file:human/FBXL20/FBXL20-uniprot.txt
      supporting_text: 'Q96IG2; P63208: SKP1; NbExp=8; IntAct=EBI-8835647, EBI-307486;'
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:32296183
  qualifier: enables
  review:
    summary: Interaction with SKP1 (P63208) from a binary interactome reference map. Bare protein binding is uninformative.
    action: KEEP_AS_NON_CORE
    reason: High-throughput SKP1 interaction; bare protein binding is uninformative.
    supported_by:
    - reference_id: file:human/FBXL20/FBXL20-uniprot.txt
      supporting_text: 'Q96IG2; P63208: SKP1; NbExp=8; IntAct=EBI-8835647, EBI-307486;'
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:33961781
  qualifier: enables
  review:
    summary: Interaction with SKP1 (P63208) from a cell-specific proteome-scale interactome. Bare protein binding is uninformative.
    action: KEEP_AS_NON_CORE
    reason: High-throughput SKP1 interaction; bare protein binding is uninformative.
    supported_by:
    - reference_id: file:human/FBXL20/FBXL20-uniprot.txt
      supporting_text: 'Q96IG2; P63208: SKP1; NbExp=8; IntAct=EBI-8835647, EBI-307486;'
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:34731788
  qualifier: enables
  review:
    summary: Interaction with PPP2R2A/PR55alpha (P63151), the FBXL20 substrate identified in the p53/FBXL20/PR55alpha study. Bare protein binding is uninformative.
    action: KEEP_AS_NON_CORE
    reason: Records the functionally important FBXL20-PR55alpha substrate interaction, but bare protein binding is uninformative; the relationship is captured by the catabolic-process context.
    supported_by:
    - reference_id: PMID:34731788
      supporting_text: the protein-stability of PR55α via FBXL20, a p53-target gene that serves as a substrate recognition component of the SCF (Skp1_Cullin1_F-box) E3 ubiquitin ligase complex
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:40205054
  qualifier: enables
  review:
    summary: Interaction with SKP1 (P63208) from a multimodal cell-map genomics study. Bare protein binding is uninformative.
    action: KEEP_AS_NON_CORE
    reason: High-throughput SKP1 interaction; bare protein binding is uninformative.
    supported_by:
    - reference_id: file:human/FBXL20/FBXL20-uniprot.txt
      supporting_text: 'Q96IG2; P63208: SKP1; NbExp=8; IntAct=EBI-8835647, EBI-307486;'
- term:
    id: GO:0045202
    label: synapse
  evidence_type: IEA
  original_reference_id: GO_REF:0000107
  qualifier: is_active_in
  review:
    summary: Ortholog-based electronic assignment of synaptic activity, reflecting the mouse SCRAPPER ortholog's synaptic function.
    action: KEEP_AS_NON_CORE
    reason: Plausible from the mouse ortholog (SCRAPPER), but not directly demonstrated for the human protein; secondary to the core SCF substrate-receptor activity.
    supported_by:
    - reference_id: file:human/FBXL20/FBXL20-uniprot.txt
      supporting_text: Role in neural transmission (By similarity).
- term:
    id: GO:0098685
    label: Schaffer collateral - CA1 synapse
  evidence_type: IEA
  original_reference_id: GO_REF:0000107
  qualifier: is_active_in
  review:
    summary: Ortholog-based electronic assignment of activity at the Schaffer collateral-CA1 synapse, from the mouse SCRAPPER ortholog.
    action: KEEP_AS_NON_CORE
    reason: Highly specific synaptic localization inferred from the mouse ortholog; not demonstrated for the human protein and secondary to the core activity.
    supported_by:
    - reference_id: file:human/FBXL20/FBXL20-uniprot.txt
      supporting_text: Role in neural transmission (By similarity).
- term:
    id: GO:0098978
    label: glutamatergic synapse
  evidence_type: IEA
  original_reference_id: GO_REF:0000107
  qualifier: is_active_in
  review:
    summary: Ortholog-based electronic assignment of activity at glutamatergic synapses, from the mouse SCRAPPER ortholog.
    action: KEEP_AS_NON_CORE
    reason: Plausible from the mouse ortholog; not directly demonstrated for the human protein and secondary to the core activity.
    supported_by:
    - reference_id: file:human/FBXL20/FBXL20-uniprot.txt
      supporting_text: Role in neural transmission (By similarity).
- term:
    id: GO:0099575
    label: regulation of protein catabolic process at presynapse, modulating synaptic
      transmission
  evidence_type: IEA
  original_reference_id: GO_REF:0000107
  qualifier: involved_in
  review:
    summary: Ortholog-based electronic assignment of presynaptic protein-catabolism regulation, reflecting the SCRAPPER ortholog's ubiquitination of the active-zone protein RIM1 to control synaptic vesicle release.
    action: KEEP_AS_NON_CORE
    reason: Plausible role inferred from the mouse SCRAPPER ortholog (RIM1 ubiquitination at the presynapse); not directly demonstrated for the human protein and a context-specific process distinct from the generic core activity.
    supported_by:
    - reference_id: file:human/FBXL20/FBXL20-uniprot.txt
      supporting_text: Role in neural transmission (By similarity).
- term:
    id: GO:2000300
    label: regulation of synaptic vesicle exocytosis
  evidence_type: IEA
  original_reference_id: GO_REF:0000107
  qualifier: involved_in
  review:
    summary: Ortholog-based electronic assignment of synaptic-vesicle-exocytosis regulation, reflecting the SCRAPPER ortholog's control of presynaptic release.
    action: KEEP_AS_NON_CORE
    reason: Plausible role inferred from the mouse ortholog; not directly demonstrated for the human protein and downstream of the core SCF substrate-receptor activity.
    supported_by:
    - reference_id: file:human/FBXL20/FBXL20-uniprot.txt
      supporting_text: Role in neural transmission (By similarity).
- term:
    id: GO:0031146
    label: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
  evidence_type: NAS
  original_reference_id: PMID:33234069
  qualifier: involved_in
  review:
    summary: ComplexPortal author statement that FBXL20 functions in SCF-dependent proteasomal protein catabolism. Captures the core biological process.
    action: ACCEPT
    reason: Core biological process for an SCF F-box substrate receptor; supported by PR55alpha degradation (PMID:34731788) and the SCRAPPER ortholog's RIM1 turnover.
    supported_by:
    - reference_id: PMID:34731788
      supporting_text: substrate recognition component of the SCF (Skp1_Cullin1_F-box) E3 ubiquitin ligase complex that promotes proteasomal degradation of its targeted proteins
- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-8952618
  qualifier: located_in
  review:
    summary: Reactome cytosolic localization within generic CRL1/NEDD8-cycle reactions.
    action: KEEP_AS_NON_CORE
    reason: Generic CRL-cycle pathway annotation; reflects shared cytosolic CRL machinery rather than FBXL20-specific function.
    supported_by:
    - reference_id: file:human/FBXL20/FBXL20-uniprot.txt
      supporting_text: 'Cytoplasm {ECO:0000250}.'
- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-8952620
  qualifier: located_in
  review:
    summary: Reactome cytosolic localization within a generic CRL1 NEDD8-binding reaction.
    action: KEEP_AS_NON_CORE
    reason: Generic CRL-cycle pathway annotation; reflects shared cytosolic CRL machinery.
    supported_by:
    - reference_id: file:human/FBXL20/FBXL20-uniprot.txt
      supporting_text: 'Cytoplasm {ECO:0000250}.'
- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-8955241
  qualifier: located_in
  review:
    summary: Reactome cytosolic localization within a generic CAND1/CRL reaction.
    action: KEEP_AS_NON_CORE
    reason: Generic CRL-cycle pathway annotation; reflects shared cytosolic CRL machinery.
    supported_by:
    - reference_id: file:human/FBXL20/FBXL20-uniprot.txt
      supporting_text: 'Cytoplasm {ECO:0000250}.'
- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-8955289
  qualifier: located_in
  review:
    summary: Reactome cytosolic localization within a generic COMMD/CAND1/CRL reaction.
    action: KEEP_AS_NON_CORE
    reason: Generic CRL-cycle pathway annotation; reflects shared cytosolic CRL machinery.
    supported_by:
    - reference_id: file:human/FBXL20/FBXL20-uniprot.txt
      supporting_text: 'Cytoplasm {ECO:0000250}.'
- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-8956040
  qualifier: located_in
  review:
    summary: Reactome cytosolic localization within a generic COP9-signalosome deneddylation reaction.
    action: KEEP_AS_NON_CORE
    reason: Generic CRL-cycle pathway annotation; reflects shared cytosolic CRL machinery.
    supported_by:
    - reference_id: file:human/FBXL20/FBXL20-uniprot.txt
      supporting_text: 'Cytoplasm {ECO:0000250}.'
- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-8956200
  qualifier: located_in
  review:
    summary: Reactome cytosolic localization within a generic DCUN1D3/CRL1 reaction.
    action: KEEP_AS_NON_CORE
    reason: Generic CRL-cycle pathway annotation; reflects shared cytosolic CRL machinery.
    supported_by:
    - reference_id: file:human/FBXL20/FBXL20-uniprot.txt
      supporting_text: 'Cytoplasm {ECO:0000250}.'
- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-983140
  qualifier: located_in
  review:
    summary: Reactome cytosolic localization within a generic E2-to-substrate ubiquitin-transfer reaction.
    action: KEEP_AS_NON_CORE
    reason: Generic ubiquitination pathway annotation; reflects shared cytosolic machinery.
    supported_by:
    - reference_id: file:human/FBXL20/FBXL20-uniprot.txt
      supporting_text: 'Cytoplasm {ECO:0000250}.'
- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-983147
  qualifier: located_in
  review:
    summary: Reactome cytosolic localization within a generic E3-release reaction.
    action: KEEP_AS_NON_CORE
    reason: Generic ubiquitination pathway annotation; reflects shared cytosolic machinery.
    supported_by:
    - reference_id: file:human/FBXL20/FBXL20-uniprot.txt
      supporting_text: 'Cytoplasm {ECO:0000250}.'
- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-983156
  qualifier: located_in
  review:
    summary: Reactome cytosolic localization within a generic substrate-polyubiquitination reaction.
    action: KEEP_AS_NON_CORE
    reason: Generic ubiquitination pathway annotation; reflects shared cytosolic machinery.
    supported_by:
    - reference_id: file:human/FBXL20/FBXL20-uniprot.txt
      supporting_text: 'Cytoplasm {ECO:0000250}.'
- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-983157
  qualifier: located_in
  review:
    summary: Reactome cytosolic localization within a generic E3-substrate-E2 interaction reaction.
    action: KEEP_AS_NON_CORE
    reason: Generic ubiquitination pathway annotation; reflects shared cytosolic machinery.
    supported_by:
    - reference_id: file:human/FBXL20/FBXL20-uniprot.txt
      supporting_text: 'Cytoplasm {ECO:0000250}.'
- term:
    id: GO:1990756
    label: ubiquitin-like ligase-substrate adaptor activity
  evidence_type: IDA
  original_reference_id: PMID:34731788
  qualifier: enables
  review:
    summary: Proposed core molecular function. As the LRR substrate-recognition subunit of SCF(FBXL20), FBXL20 selects substrates (PR55alpha/PPP2R2A in human cells; RIM1 for the SCRAPPER ortholog) for SCF-dependent ubiquitination. This more informative MF term is not in the GOA.
    action: NEW
    reason: Captures the precise molecular function of FBXL20 as an SCF substrate-recognition adaptor, more informative than the bare protein binding annotations.
    supported_by:
    - reference_id: PMID:34731788
      supporting_text: substrate recognition component of the SCF (Skp1_Cullin1_F-box) E3 ubiquitin ligase complex that promotes proteasomal degradation of its targeted proteins
references:
- id: GO_REF:0000044
  title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location
    vocabulary mapping, accompanied by conservative changes to GO terms applied by
    UniProt
  findings: []
- id: GO_REF:0000107
  title: Automatic transfer of experimentally verified manual GO annotation data to
    orthologs using Ensembl Compara
  findings: []
- id: GO_REF:0000108
  title: Automatic assignment of GO terms using logical inference, based on on inter-ontology
    links
  findings: []
- id: PMID:27705803
  title: A High-Density Map for Navigating the Human Polycomb Complexome.
  findings: []
  reference_review:
    relevance: LOW
    correctness: VERIFIED
    review_notes: High-throughput complexome map; source of an SKP1 interaction (bare protein binding).
- id: PMID:32296183
  title: A reference map of the human binary protein interactome.
  findings: []
  reference_review:
    relevance: LOW
    correctness: VERIFIED
    review_notes: Binary interactome reference map; source of an SKP1 interaction (bare protein binding).
- id: PMID:33234069
  title: 'The FBXL family of F-box proteins: variations on a theme.'
  findings: []
  reference_review:
    relevance: MEDIUM
    correctness: VERIFIED
    review_notes: Review of the FBXL family; basis for the ComplexPortal NAS SCF-catabolic-process annotation.
- id: PMID:33961781
  title: Dual proteome-scale networks reveal cell-specific remodeling of the human
    interactome.
  findings: []
  reference_review:
    relevance: LOW
    correctness: VERIFIED
    review_notes: High-throughput interactome; source of an SKP1 interaction (bare protein binding).
- id: PMID:34731788
  title: p53/FBXL20 axis negatively regulates the protein stability of PR55α, a regulatory
    subunit of PP2A Ser/Thr phosphatase.
  findings:
  - statement: FBXL20 is a p53-target gene whose product is the substrate-recognition component of an SCF E3 ligase that promotes ubiquitination and proteasomal degradation of PR55alpha/PPP2R2A; FBXL20 knockdown reduces PR55alpha ubiquitination and increases its stability.
    reference_section_type: ABSTRACT
  reference_review:
    relevance: HIGH
    correctness: VERIFIED
    review_notes: PubMed-verified (Neoplasia 2021), full text available; establishes PR55alpha/PPP2R2A as a human SCF(FBXL20) substrate and the p53 regulatory axis.
- id: PMID:40205054
  title: Multimodal cell maps as a foundation for structural and functional genomics.
  findings: []
  reference_review:
    relevance: LOW
    correctness: VERIFIED
    review_notes: High-throughput cell-map genomics; source of an SKP1 interaction (bare protein binding).
- id: Reactome:R-HSA-8952618
  title: AcM-UBE2M transfers NEDD8 to CRL1 E3 ubiquitin ligase complex
  findings: []
- id: Reactome:R-HSA-8952620
  title: NEDD8:AcM-UBE2M binds CRL1 E3 ubiquitin ligase complex
  findings: []
- id: Reactome:R-HSA-8955241
  title: CAND1 binds cytosolic CRL E3 ubiquitin ligases
  findings: []
- id: Reactome:R-HSA-8955289
  title: COMMDs displace CAND1 from cytosolic CRL E3 ubiquitin ligase complexes
  findings: []
- id: Reactome:R-HSA-8956040
  title: COP9 signalosome deneddylates cytosolic CRL E3 ubiquitin ligase complexes
  findings: []
- id: Reactome:R-HSA-8956200
  title: MyrG-DCUN1D3 binds CRL1 E3 ubiquitin ligase complex
  findings: []
- id: Reactome:R-HSA-983140
  title: Transfer of Ub from E2 to substrate and release of E2
  findings: []
- id: Reactome:R-HSA-983147
  title: Release of E3 from polyubiquitinated substrate
  findings: []
- id: Reactome:R-HSA-983156
  title: Polyubiquitination of substrate
  findings: []
- id: file:human/FBXL20/FBXL20-deep-research-falcon.md
  title: Falcon deep research report for human FBXL20
  findings:
  - statement: FBXL20 is the substrate-recognition subunit of an SCF (CUL1-SKP1-FBXL20) E3 ligase that promotes ubiquitination and proteasomal degradation of VPS34/PIK3C3, binding VPS34 through its C-terminal LRR region (VPS34 C2 domain).
    supporting_text: >-
      FBXL20 acts as the substrate-recognition component of an **SCF (SKP1-CUL1-FBXL20)**
      E3 ubiquitin ligase that promotes **ubiquitination and proteasomal degradation**
      of **VPS34 (PIK3C3)**, the catalytic subunit of class III PI3K complexes.
  - statement: DNA damage drives a p53 to FBXL20 to VPS34 checkpoint in which CDK-dependent VPS34 Thr159 phosphorylation creates a phosphodegron required for FBXL20-mediated ubiquitination.
    supporting_text: >-
      phosphorylation at **T159** is required for efficient FBXL20-mediated
      ubiquitination and degradation. Specifically, VPS34 **T159A** (nonphosphorylatable)
      is largely resistant, whereas **T159E** (phosphomimetic) remains sensitive
  - statement: By lowering VPS34 and PtdIns3P output, FBXL20 acts as a negative regulator of autophagy under genotoxic stress and slows endosomal degradation of receptors such as EGFR.
    supporting_text: >-
      FBXL20 knockdown increases VPS34 and increases an autophagy marker readout
      (LC3-II ratio), whereas FBXL20 overexpression lowers VPS34; collectively this
      supports FBXL20 as a **negative regulator of autophagy** under genotoxic stress
  - statement: FBXL20 contains a CAAX motif that is isoprenylated, directing it to membranes, and this localization is required for ubiquitylation-dependent degradation of RIM1.
    supporting_text: >-
      FBXL20 contains a **CAAX motif** that is **isoprenylated**, directing FBXL20 to
      **membranes**; this localization is required for ubiquitylation-dependent
      degradation of **RIM1** (RAB3-interacting molecule 1)
  reference_review:
    relevance: HIGH
    correctness: VERIFIED
    review_notes: >-
      Falcon adds the human VPS34/PIK3C3 substrate axis (Xiao et al. 2015 Genes &
      Dev, DOI 10.1101/gad.252528.114) and the CAAX-isoprenylation/membrane-localization
      requirement for RIM1 degradation (Skaar et al. 2013 Nat Rev Mol Cell Biol
      review). These are reported via author-year DOIs not in the PMID cache;
      cross-checked against UniProt and the existing PR55alpha study (PMID:34731788),
      and treated as well-supported leads rather than added as new GOA terms.
- id: Reactome:R-HSA-983157
  title: Interaction of E3 with substrate and E2-Ub complex
  findings: []
core_functions:
- description: Substrate-recognition subunit of an SCF (SKP1-CUL1-RBX1) E3 ubiquitin ligase complex that selects substrates for SCF-dependent polyubiquitination and proteasomal degradation; in human cells it targets PR55alpha/PPP2R2A (a PP2A regulatory subunit) downstream of p53.
  molecular_function:
    id: GO:1990756
    label: ubiquitin-like ligase-substrate adaptor activity
  locations:
  - id: GO:0005737
    label: cytoplasm
  supported_by:
  - reference_id: PMID:34731788
    supporting_text: substrate recognition component of the SCF (Skp1_Cullin1_F-box) E3 ubiquitin ligase complex that promotes proteasomal degradation of its targeted proteins
  directly_involved_in:
  - id: GO:0031146
    label: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
- description: As the SCF(FBXL20) substrate receptor, targets VPS34/PIK3C3 for phosphodegron-gated (VPS34 Thr159) ubiquitination and proteasomal degradation downstream of p53/DNA-damage signaling, lowering PtdIns3P output to negatively regulate autophagy and endosomal receptor (e.g. EGFR) trafficking.
  molecular_function:
    id: GO:1990756
    label: ubiquitin-like ligase-substrate adaptor activity
  locations:
  - id: GO:0005737
    label: cytoplasm
  supported_by:
  - reference_id: file:human/FBXL20/FBXL20-deep-research-falcon.md
    supporting_text: >-
      FBXL20 acts as the substrate-recognition component of an **SCF (SKP1-CUL1-FBXL20)**
      E3 ubiquitin ligase that promotes **ubiquitination and proteasomal degradation**
      of **VPS34 (PIK3C3)**, the catalytic subunit of class III PI3K complexes.
  directly_involved_in:
  - id: GO:0031146
    label: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
- description: Membrane-associated presynaptic SCF substrate receptor (SCRAPPER ortholog), targeted to membranes via CAAX-motif isoprenylation, that regulates protein catabolism at the presynapse to modulate synaptic vesicle release and neurotransmission, via ubiquitination of active-zone substrates such as RIM1/RIMS1.
  molecular_function:
    id: GO:1990756
    label: ubiquitin-like ligase-substrate adaptor activity
  locations:
  - id: GO:0098793
    label: presynapse
  supported_by:
  - reference_id: file:human/FBXL20/FBXL20-uniprot.txt
    supporting_text: Role in neural transmission (By similarity).
  - reference_id: file:human/FBXL20/FBXL20-deep-research-falcon.md
    supporting_text: >-
      FBXL20 contains a **CAAX motif** that is **isoprenylated**, directing FBXL20 to
      **membranes**; this localization is required for ubiquitylation-dependent
      degradation of **RIM1** (RAB3-interacting molecule 1)
  directly_involved_in:
  - id: GO:0099575
    label: regulation of protein catabolic process at presynapse, modulating synaptic
      transmission
proposed_new_terms: []
suggested_questions:
- question: Which of the FBXL20 functions established for the mouse SCRAPPER ortholog (RIM1 ubiquitination, regulation of synaptic vesicle release) are conserved and directly demonstrable for the human protein, and is CAAX isoprenylation required?
- question: How do the membrane/autophagy (VPS34/PIK3C3, p53-DNA-damage axis), synaptic (RIM1), and PP2A (PR55alpha) substrate-targeting activities of FBXL20 relate, and are they coordinated by CAAX-dependent localization or by distinct phosphodegrons?
suggested_experiments:
- description: Reconstitute SCF(FBXL20)-mediated ubiquitination in vitro with purified SKP1-CUL1-RBX1-FBXL20, an E2, and candidate substrates (VPS34/PIK3C3 phosphorylated at Thr159, PR55alpha/PPP2R2A, RIM1) to confirm direct ubiquitination, test phosphodegron dependence, and map sites.
- description: Use FBXL20 knockout/knockdown (and CAAX-motif mutants) in human neurons and epithelial cells with quantitative ubiquitinome/proteome profiling and autophagy/PtdIns3P readouts to define the endogenous substrate repertoire, test the p53-FBXL20-VPS34 autophagy checkpoint, and assess conservation of the presynaptic role.
