FBXO15 (F-box only protein 15, FBX15) is a 510-amino-acid F-box protein of the "FBXO/other" class that serves as the substrate-recognition component of an SCF (SKP1-CUL1-F-box protein, also called CRL1) cullin-RING E3 ubiquitin ligase complex. Like other F-box proteins, it docks onto the SCF core through its F-box domain (residues 77-117), which binds the adaptor SKP1; SKP1 in turn bridges to the scaffold CUL1 and the catalytic RING subunit RBX1 that recruits the ubiquitin-charged E2 enzyme. FBXO15 therefore does not itself possess catalytic ubiquitin-transfer activity; it confers substrate specificity on the ligase, positioning a bound target protein for poly-ubiquitination and subsequent proteasomal degradation. Several substrates have been experimentally reported, often recruited through modification-dependent degrons: FBXO15 uniquely associates with and degrades cardiolipin synthase 1 (CLS1) in a PINK1-linked module (phospho-Thr219-dependent recognition; CLS1 Lys174 ubiquitination), an ER/cytosol-associated activity that limits mitochondrial cardiolipin and has been implicated in pneumonia/lung-injury models; it cooperates with the E2 CDC34/UBE2R1 to ubiquitinate the drug-efflux transporter P-glycoprotein (ABCB1/MDR1), so that FBXO15 loss raises P-gp levels and multidrug resistance; and in breast cancer it promotes ubiquitin-dependent degradation of the stemness/signaling factors SOX2 and STAT3, dampening EGFR/ERK/STAT3 signaling and acting as a tumor suppressor (higher FBXO15 expression correlating with better survival). In mouse embryonic stem cells the ortholog recognizes an acetyldegron on KBP (acetyl-Lys501) and is preferentially expressed in undifferentiated cells, linking it to pluripotency biology. FBXO15 is expressed broadly with enhancement in testis and fallopian tube. Two splice isoforms are produced, the shorter of which lacks the N-terminal region preceding the F-box domain. Despite these reports, most substrate-pathway links rest on individual studies and the integrated physiological role of human FBXO15 remains only partly defined.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
| GO:0019005 SCF ubiquitin ligase complex | IBA GO_REF:0000033 | ACCEPT | Summary: Phylogenetic assignment that FBXO15 is part of the SCF (SKP1-CUL1-F-box) E3 ubiquitin ligase complex, the core localization/assembly for an F-box substrate receptor. Reason: Core localization; FBXO15 is an F-box protein that, per UniProt, directly interacts with SKP1 and CUL1 and is the substrate-recognition component of the SCF complex. This is the central, family-conserved assignment. Supporting Evidence: file:human/FBXO15/FBXO15-uniprot.txt Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. |
| GO:1990756 ubiquitin-like ligase-substrate adaptor activity | NAS PMID:34445249 The SCF Complex Is Essential to Maintain Genome and Chromoso... | NEW | Summary: Proposed NEW molecular-function annotation. As an F-box protein, FBXO15 is the substrate-recognition (substrate-adaptor) subunit of an SCF/CRL1 E3 ligase; it does not itself catalyze ubiquitin transfer (the RING subunit RBX1 is catalytic). The appropriate informative MF for an F-box substrate receptor is ubiquitin-like ligase-substrate adaptor activity (GO:1990756) rather than ubiquitin protein ligase activity. GOA currently carries no MF annotation for FBXO15, so this is added as NEW. Reason: Captures the core substrate-adaptor molecular function of FBXO15 as an F-box protein; consistent with UniProt (substrate-recognition component directly interacting with SKP1 and CUL1) and the ComplexPortal FBXO15-variant SCF complex. Supporting Evidence: file:human/FBXO15/FBXO15-uniprot.txt Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. file:human/FBXO15/FBXO15-uniprot.txt Directly interacts with SKP1 and CUL1. |
| GO:0005515 protein binding | IPI PMID:32814053 Interactome Mapping Provides a Network of Neurodegenerative ... | KEEP AS NON CORE | Summary: IntAct interaction with junctophilin-3 (JPH3, Q8WXH2) captured in a neurodegenerative-disease yeast two-hybrid interactome. Records a real binary interaction, but bare protein binding is uninformative. Reason: Documents a real interaction (FBXO15-JPH3) but the bare protein binding term carries no functional information per curation guidelines; not a core function. Supporting Evidence: file:human/FBXO15/FBXO15-uniprot.txt Q8NCQ5; Q8WXH2: JPH3; NbExp=3; IntAct=EBI-6660598, EBI-1055254; |
| GO:0019005 SCF ubiquitin ligase complex | NAS PMID:34445249 The SCF Complex Is Essential to Maintain Genome and Chromoso... | ACCEPT | Summary: ComplexPortal author-statement assignment (CPX-7925, "SCF E3 ubiquitin ligase complex, FBXO15 variant") that FBXO15 is part of the SCF complex. Redundant with the IBA assignment and consistent with the UniProt SUBUNIT data. Reason: Core localization; consistent with UniProt (direct SKP1/CUL1 interaction) and with the ComplexPortal FBXO15-variant SCF complex. Redundant with the IBA SCF annotation. Supporting Evidence: file:human/FBXO15/FBXO15-uniprot.txt Directly interacts with SKP1 and CUL1. |
| GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | NAS PMID:34445249 The SCF Complex Is Essential to Maintain Genome and Chromoso... | ACCEPT | Summary: ComplexPortal author-statement assignment that FBXO15, as an SCF substrate receptor, participates in SCF-dependent proteasomal ubiquitin-dependent protein catabolism. This is the core biological process inferred for an F-box protein. Reason: Core biological process for an SCF substrate-recognition subunit; consistent with the reviewed SCF complexes targeting substrates for proteasomal degradation and with the UniProt FUNCTION/keyword (Ubl conjugation pathway). Falcon-sourced primary literature grounds this with specific reported substrates (CLS1, ABCB1/P-gp, SOX2, STAT3), confirming FBXO15 directs targets into SCF-dependent proteasomal degradation and matching the functional placement of FBXO15 as an F-box/SCF (CRL1) substrate-recognition receptor. Supporting Evidence: PMID:34445249 The SKP1, CUL1, F-box protein (SCF) complex encompasses a group of 69 SCF E3 ubiquitin ligase complexes that primarily modify protein substrates with poly-ubiquitin chains to target them for proteasomal degradation. file:human/FBXO15/FBXO15-deep-research-falcon.md its primary biochemical role is **proteinβprotein interactionβmediated substrate recruitment** to an SCF-type E3 ligase, enabling **target protein polyubiquitination** and **proteasomal degradation**. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-8952618 | KEEP AS NON CORE | Summary: Reactome generic cytosol localization within the neddylation/CRL pathway reactions. A plausible but generic localization not tied to a specific demonstrated FBXO15 function. Reason: Generic compartment from pathway-level Reactome curation (CRL neddylation); plausible for a cytosolic SCF subunit but not specific to FBXO15 and subsidiary to the SCF complex localization. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-8952620 | KEEP AS NON CORE | Summary: Reactome generic cytosol localization (NEDD8:UBE2M binds CRL1) propagated to all CRL1 F-box subunits. Generic, non-specific. Reason: Generic pathway-level Reactome compartment; subsidiary to the SCF complex localization and not a specific demonstrated FBXO15 site. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-8955241 | KEEP AS NON CORE | Summary: Reactome generic cytosol localization (CAND1 binds cytosolic CRL E3 ligases) propagated to CRL components. Generic, non-specific. Reason: Generic pathway-level Reactome compartment; subsidiary to the SCF complex localization. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-8955289 | KEEP AS NON CORE | Summary: Reactome generic cytosol localization (COMMDs displace CAND1 from cytosolic CRLs). Generic, non-specific. Reason: Generic pathway-level Reactome compartment; subsidiary to the SCF complex localization. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-8956040 | KEEP AS NON CORE | Summary: Reactome generic cytosol localization (COP9 signalosome deneddylates cytosolic CRLs). Generic, non-specific. Reason: Generic pathway-level Reactome compartment; subsidiary to the SCF complex localization. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-8956200 | KEEP AS NON CORE | Summary: Reactome generic cytosol localization (MyrG-DCUN1D3 binds CRL1) propagated to CRL1 subunits. Generic, non-specific. Reason: Generic pathway-level Reactome compartment; subsidiary to the SCF complex localization. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-983140 | KEEP AS NON CORE | Summary: Reactome generic cytosol localization (transfer of Ub from E2 to substrate) within the general ubiquitination machinery. Generic, non-specific. Reason: Generic pathway-level Reactome compartment; subsidiary to the SCF complex localization. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-983147 | KEEP AS NON CORE | Summary: Reactome generic cytosol localization (release of E3 from polyubiquitinated substrate). Generic, non-specific. Reason: Generic pathway-level Reactome compartment; subsidiary to the SCF complex localization. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-983156 | KEEP AS NON CORE | Summary: Reactome generic cytosol localization (polyubiquitination of substrate). Generic, non-specific. Reason: Generic pathway-level Reactome compartment; subsidiary to the SCF complex localization. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-983157 | KEEP AS NON CORE | Summary: Reactome generic cytosol localization (interaction of E3 with substrate and E2-Ub complex). Generic, non-specific. Reason: Generic pathway-level Reactome compartment; subsidiary to the SCF complex localization. |
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Download this section (compressed HTML)Q: Of the reported FBXO15 substrates (CLS1, ABCB1/P-gp, SOX2, STAT3 in human; KBP in mouse), which are bona fide direct, F-box/SKP1-dependent SCF(FBXO15) substrates, and do they reflect a common modification-dependent degron logic (phospho-degron for CLS1, acetyl-degron for KBP)?
Q: Does the FBXO15-PINK1-CLS1 axis represent a genuine physiological pathway for mitochondrial cardiolipin/lipid homeostasis, and is FBXO15 itself ER/cytosol-restricted (excluded from mitochondria) as reported?
Q: Is the testis/fallopian-tube-enhanced expression of FBXO15 reflective of a tissue-specific substrate or process, and does the pluripotency-associated expression seen for the mouse ortholog translate to a human stem-cell role?
Experiment: Affinity-purification mass spectrometry of tagged FBXO15 (full-length and the isoform-2 form lacking residues 1-76) from cells, validating SKP1/CUL1/RBX1 association and identifying candidate substrates enriched upon proteasome inhibition or by neddylation/CRL trapping; directly test CLS1, ABCB1, SOX2 and STAT3 for F-box-dependent ubiquitination.
Experiment: Reconstitute SCF(FBXO15) (SKP1-CUL1-RBX1-FBXO15) with CDC34/UBE2R1 and assay ubiquitination of CLS1 (and Thr219/Lys174 variants) and ABCB1 in vitro to confirm direct substrate-adaptor activity and the proposed degron/ubiquitination sites.
Experiment: Define the FBXO15 substrate repertoire by quantitative ubiquitinome/proteome profiling comparing FBXO15-knockout versus wild-type cells (and rescue), to detect proteins stabilized in the absence of FBXO15 as candidate SCF-FBXO15 targets across tissue contexts.
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