FBXO22 (F-box only protein 22, FBX22p44) is a 403-residue F-box protein that serves as the substrate-recognition receptor of a SCF (SKP1-CUL1-F-box)-type CUL1-RING E3 ubiquitin ligase complex. It binds the SCF core through an N-terminal F-box motif (residues ~21-67) that docks onto SKP1, while a C-terminal FIST-C/substrate-binding region engages target proteins; in the assembled SCF, the catalytic RING subunit RBX1 recruits the ubiquitin-charged E2, so FBXO22 itself contributes substrate selection rather than catalysis. Through this adaptor role FBXO22 directs polyubiquitination and proteasomal degradation of a defined set of substrates and thereby influences chromatin/transcriptional regulation, the DNA-damage and senescence response, oxidative-stress signaling, nutrient sensing, immune-checkpoint control, and antiviral defense. Documented substrates include the histone demethylases KDM4A/JMJD2A (controlling H3K9 and H3K36 methylation) and KDM4B (when KDM4B is complexed with tamoxifen-bound estrogen receptor, governing selective-estrogen-receptor- modulator pharmacology in breast cancer), methylated TP53 (in complex with KDM4A, at late senescence), the transcription factor BACH1 (upon oxidative-stress-induced exposure of its degron), nuclear (but not cytoplasmic) PTEN (ubiquitinated at Lys221), the immune-checkpoint ligand PD-L1 (CD274; degradation sensitizes cells to DNA-damaging therapy), the co-chaperone BAG3 (via an ERK-dependent phosphodegron, S377), the kinase MTOR (both K27-linked ubiquitination at Lys2066 upon amino-acid depletion to inhibit mTORC1, and degradation of the Ser2448-phosphorylated form), the transcription factor KLF4, and sarcomeric proteins; it also degrades the SARS-CoV-2 3C-like proteinase NSP5 via K48-linked chains to restrict viral replication. Many of these recognition events are post-translational-mark dependent (methylation marks, or phosphodegrons such as ERK-phosphorylated S377 of BAG3), consistent with a C-terminal substrate-binding region that reads modified degrons. A surface cysteine (Cys326) in the C-terminal domain can be covalently engaged by small molecules, making FBXO22 a recruitable E3 for targeted protein degradation. FBXO22 is broadly expressed with enrichment in liver and cardiac muscle and localizes to both the cytoplasm and nucleus, with its subcellular distribution modulated by EIF2AK4/GCN2-dependent phosphorylation at Thr-127. Biallelic loss-of-function causes Tayoun-Maawali syndrome (TYMAS), an autosomal-recessive multisystem developmental disorder.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
| GO:0000209 protein polyubiquitination | IBA GO_REF:0000033 | ACCEPT | Summary: Phylogenetic assignment of involvement in protein polyubiquitination, consistent with FBXO22's role as the substrate-recognition subunit of an SCF E3 ligase that directs polyubiquitination of substrates. Reason: Core biological role; FBXO22 mediates polyubiquitination of substrates such as KDM4A, KDM4B, methylated TP53, BACH1, nuclear PTEN, PD-L1, BAG3, MTOR and NSP5 through the SCF complex. Supporting Evidence: file:human/FBXO22/FBXO22-uniprot.txt Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex file:human/FBXO22/FBXO22-deep-research-falcon.md FBXO22 contains an N-terminal **F-box domain** mediating SCF assembly via SKP1, and a C-terminal **FIST/FIST-C** substrate-binding region (e.g., KDM4A binding mapped to the FBXO22 FIST-C domain). |
| GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process | IBA GO_REF:0000033 | ACCEPT | Summary: Phylogenetic assignment of a positive regulatory role in proteasomal ubiquitin-dependent catabolism, consistent with FBXO22 promoting proteasomal degradation of its substrates. Reason: Supported by multiple experimental studies in which FBXO22 promotes proteasome-dependent degradation of substrates (e.g. KDM4A, NSP5). Supporting Evidence: file:human/FBXO22/FBXO22-uniprot.txt Promotes the proteasome-dependent degradation of key sarcomeric proteins |
| GO:0048742 regulation of skeletal muscle fiber development | IBA GO_REF:0000033 | MARK AS OVER ANNOTATED | Summary: Phylogenetic assignment of a role in skeletal muscle fiber development. FBXO22 is enriched in cardiac muscle and is reported to regulate sarcomeric protein turnover, but a specific role in skeletal muscle fiber development is thinly supported and likely propagated from family/ortholog context. Reason: FBXO22's documented muscle link is regulation of sarcomeric protein turnover (cardiac-enriched); a specific "skeletal muscle fiber development" process is not directly demonstrated for FBXO22 and appears to be an over-propagated IBA inference. Not a core function. |
| GO:0005634 nucleus | IEA GO_REF:0000120 | ACCEPT | Summary: Electronic (ortholog-based) assignment of nuclear localization. Concordant with the experimentally supported nuclear localization of FBXO22, where it acts on nuclear substrates such as KDM4A, methylated TP53 and BACH1. Reason: Correct compartment; redundant with the EXP nucleus annotations. FBXO22 acts on chromatin-associated/nuclear substrates. Supporting Evidence: file:human/FBXO22/FBXO22-uniprot.txt Nucleus {ECO:0000269|PubMed:37979583, ECO:0000269|PubMed:39223933} |
| GO:0005737 cytoplasm | IEA GO_REF:0000120 | ACCEPT | Summary: Electronic (ortholog-based) assignment of cytoplasmic localization, concordant with the experimentally supported cytoplasmic pool of FBXO22. Reason: Correct compartment; redundant with the EXP cytoplasm annotations. FBXO22 accumulates in the cytoplasm upon amino-acid depletion to ubiquitinate MTOR. Supporting Evidence: file:human/FBXO22/FBXO22-uniprot.txt Cytoplasm {ECO:0000269|PubMed:37979583, ECO:0000269|PubMed:39223933} |
| GO:0030018 Z disc | IEA GO_REF:0000044 | KEEP AS NON CORE | Summary: Electronic localization (UniProt subcellular-location mapping) to the Z disc/sarcomere, derived from a by-similarity (ECO:0000250) sarcomere annotation. This is an inferred, non-core localization tied to the proposed sarcomeric-protein-turnover role. Reason: The sarcomere/Z-line localization in UniProt is by-similarity (ECO:0000250), not experimentally demonstrated for human FBXO22; it reflects a peripheral, tissue-specific role rather than the core nuclear/cytoplasmic SCF function. Supporting Evidence: file:human/FBXO22/FBXO22-uniprot.txt Cytoplasm, myofibril, sarcomere, Z line |
| GO:0005515 protein binding | IPI PMID:21145461 Dynamics of cullin-RING ubiquitin ligase network revealed by... | KEEP AS NON CORE | Summary: High-throughput quantitative proteomics of the cullin-RING ligase network; the recorded partner is CUL1 (Q13616), the SCF scaffold FBXO22 assembles with. Bare protein binding is uninformative. Reason: Records a real and expected SCF-scaffold interaction (CUL1), but bare protein binding is uninformative per curation guidelines; the SCF-complex membership is captured by GO:0019005. Supporting Evidence: file:human/FBXO22/FBXO22-uniprot.txt Directly interacts with SKP1 and CUL1 |
| GO:0005515 protein binding | IPI PMID:26496610 A human interactome in three quantitative dimensions organiz... | KEEP AS NON CORE | Summary: High-throughput quantitative interactome (stoichiometries and abundances); the recorded partner is SKP1 (P63208), the F-box-binding SCF adaptor. Bare protein binding is uninformative. Reason: Records the expected F-box-SKP1 interaction but bare protein binding is uninformative; SCF membership is captured by GO:0019005. |
| GO:0005515 protein binding | IPI PMID:27705803 A High-Density Map for Navigating the Human Polycomb Complex... | KEEP AS NON CORE | Summary: High-throughput affinity-purification map of the human Polycomb complexome; the recorded partner is SKP1 (P63208). Bare protein binding is uninformative. Reason: High-throughput interaction (SKP1); bare protein binding is uninformative and not a core function. |
| GO:0005515 protein binding | IPI PMID:32296183 A reference map of the human binary protein interactome. | KEEP AS NON CORE | Summary: Binary protein interactome reference map; the recorded partner is SKP1 (P63208). Bare protein binding is uninformative. Reason: High-throughput binary interactome (SKP1); bare protein binding is uninformative. |
| GO:0005515 protein binding | IPI PMID:33961781 Dual proteome-scale networks reveal cell-specific remodeling... | KEEP AS NON CORE | Summary: Proteome-scale BioPlex interactome; the recorded partner is SKP1 (P63208). Bare protein binding is uninformative. Reason: High-throughput interactome (SKP1); bare protein binding is uninformative. |
| GO:0005515 protein binding | IPI PMID:40205054 Multimodal cell maps as a foundation for structural and func... | KEEP AS NON CORE | Summary: Multimodal cell-map interactome study; the recorded partner is SKP1 (P63208). Bare protein binding is uninformative. Reason: High-throughput interactome (SKP1); bare protein binding is uninformative. |
| GO:0005634 nucleus | EXP PMID:37979583 The tRNA-GCN2-FBXO22-axis-mediated mTOR ubiquitination sense... | ACCEPT | Summary: Experimental evidence for nuclear localization of FBXO22, consistent with its action on nuclear substrates and its regulated nuclear/cytoplasmic partitioning. Reason: Experimentally supported localization; FBXO22 partitions between nucleus and cytoplasm, with cytoplasmic accumulation triggered by amino-acid depletion. Supporting Evidence: file:human/FBXO22/FBXO22-uniprot.txt Nucleus {ECO:0000269|PubMed:37979583, ECO:0000269|PubMed:39223933} |
| GO:0005634 nucleus | EXP PMID:39223933 E3 ubiquitin ligase FBXO22 inhibits SARS-CoV-2 replication v... | ACCEPT | Summary: Experimental evidence for nuclear localization of FBXO22 from the NSP5-degradation study. Reason: Experimentally supported localization corroborating the nucleus annotation. Supporting Evidence: file:human/FBXO22/FBXO22-uniprot.txt Nucleus {ECO:0000269|PubMed:37979583, ECO:0000269|PubMed:39223933} |
| GO:0005737 cytoplasm | EXP PMID:37979583 The tRNA-GCN2-FBXO22-axis-mediated mTOR ubiquitination sense... | ACCEPT | Summary: Experimental evidence for cytoplasmic localization; FBXO22 accumulates in the cytoplasm upon amino-acid depletion (GCN2/EIF2AK4-dependent Thr-127 phosphorylation) to ubiquitinate MTOR. Reason: Experimentally supported localization directly tied to the mTORC1-regulatory function. Supporting Evidence: file:human/FBXO22/FBXO22-uniprot.txt Amino acid depletion lead to a time-dependent increase of FBXO22 in the cytoplasm |
| GO:0005737 cytoplasm | EXP PMID:39223933 E3 ubiquitin ligase FBXO22 inhibits SARS-CoV-2 replication v... | ACCEPT | Summary: Experimental evidence for cytoplasmic localization from the NSP5-degradation study. Reason: Experimentally supported localization corroborating the cytoplasm annotation. Supporting Evidence: file:human/FBXO22/FBXO22-uniprot.txt Cytoplasm {ECO:0000269|PubMed:37979583, ECO:0000269|PubMed:39223933} |
| GO:0019005 SCF ubiquitin ligase complex | NAS PMID:34445249 The SCF Complex Is Essential to Maintain Genome and Chromoso... | ACCEPT | Summary: Membership in the SCF (SKP1-CUL1-F-box) E3 ubiquitin ligase complex, the defining macromolecular assembly for FBXO22 as an F-box substrate receptor. ComplexPortal records an SCF FBXO22 variant complex. Reason: Core component; FBXO22 is the F-box substrate receptor of an SCF complex, directly interacting with SKP1 and CUL1. Supporting Evidence: file:human/FBXO22/FBXO22-uniprot.txt Directly interacts with SKP1 and CUL1 |
| GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | NAS PMID:34445249 The SCF Complex Is Essential to Maintain Genome and Chromoso... | ACCEPT | Summary: Involvement in SCF-dependent proteasomal degradation, the core biological process executed by FBXO22 as an SCF substrate receptor. Reason: Core biological process; FBXO22-containing SCF targets substrates (e.g. KDM4A, methylated TP53, BACH1) for proteasomal degradation. Supporting Evidence: file:human/FBXO22/FBXO22-uniprot.txt Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex |
| GO:0005829 cytosol | TAS Reactome:R-HSA-8952618 | KEEP AS NON CORE | Summary: Reactome pathway-level cytosol localization within a generic CRL1 neddylation reaction (AcM-UBE2M transfers NEDD8 to CRL1). Generic compartment annotation propagated to all CRL1 members. Reason: Cytosol is consistent with the cytoplasmic pool of FBXO22, but this is a generic CRL-machinery Reactome annotation; the more informative compartment annotations are the EXP nucleus/cytoplasm terms. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-8952620 | KEEP AS NON CORE | Summary: Reactome cytosol localization within a generic CRL1 neddylation reaction (NEDD8:AcM-UBE2M binds CRL1). Generic compartment annotation. Reason: Generic CRL-machinery Reactome localization; redundant with and less informative than the EXP compartment annotations. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-8955241 | KEEP AS NON CORE | Summary: Reactome cytosol localization within a generic CRL reaction (CAND1 binds cytosolic CRL E3 ligases). Generic compartment annotation. Reason: Generic CRL-machinery Reactome localization; not a core, FBXO22-specific compartment annotation. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-8955289 | KEEP AS NON CORE | Summary: Reactome cytosol localization within a generic CRL reaction (COMMDs displace CAND1 from cytosolic CRL complexes). Generic compartment annotation. Reason: Generic CRL-machinery Reactome localization; not a core, FBXO22-specific compartment annotation. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-8956040 | KEEP AS NON CORE | Summary: Reactome cytosol localization within a generic CRL reaction (COP9 signalosome deneddylates cytosolic CRL complexes). Generic compartment annotation. Reason: Generic CRL-machinery Reactome localization; not a core, FBXO22-specific compartment annotation. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-8956200 | KEEP AS NON CORE | Summary: Reactome cytosol localization within a generic CRL1 reaction (MyrG-DCUN1D3 binds CRL1). Generic compartment annotation. Reason: Generic CRL-machinery Reactome localization; not a core, FBXO22-specific compartment annotation. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-983140 | KEEP AS NON CORE | Summary: Reactome cytosol localization within a generic ubiquitination reaction (transfer of Ub from E2 to substrate). Generic compartment annotation. Reason: Generic ubiquitination-machinery Reactome localization; not a core, FBXO22-specific compartment annotation. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-983147 | KEEP AS NON CORE | Summary: Reactome cytosol localization within a generic ubiquitination reaction (release of E3 from polyubiquitinated substrate). Generic compartment annotation. Reason: Generic ubiquitination-machinery Reactome localization; not a core, FBXO22-specific compartment annotation. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-983156 | KEEP AS NON CORE | Summary: Reactome cytosol localization within a generic ubiquitination reaction (polyubiquitination of substrate). Generic compartment annotation. Reason: Generic ubiquitination-machinery Reactome localization; not a core, FBXO22-specific compartment annotation. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-983157 | KEEP AS NON CORE | Summary: Reactome cytosol localization within a generic ubiquitination reaction (interaction of E3 with substrate and E2-Ub complex). Generic compartment annotation. Reason: Generic ubiquitination-machinery Reactome localization; not a core, FBXO22-specific compartment annotation. |
| GO:0004842 ubiquitin-protein transferase activity | TAS PMID:10531037 A family of mammalian F-box proteins. | MODIFY | Summary: Legacy F-box-family TAS annotation of ubiquitin-protein transferase activity. As an F-box substrate receptor, FBXO22 is the substrate-specific adaptor of the SCF; the catalytic transferase activity resides in the RBX1-RING/E2 module, not in the F-box protein itself. Reason: FBXO22 is the substrate-recognition subunit of the SCF, not the catalytic transferase. The essence (participation in ubiquitin transfer) is sound, but the more accurate molecular function is the ubiquitin-like ligase-substrate adaptor activity; replace the catalytic transferase term with GO:1990756. Proposed replacements: ubiquitin-like ligase-substrate adaptor activity Supporting Evidence: file:human/FBXO22/FBXO22-uniprot.txt Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex |
| GO:0006511 ubiquitin-dependent protein catabolic process | TAS PMID:10531035 Identification of a family of human F-box proteins. | KEEP AS NON CORE | Summary: Legacy TAS annotation (F-box family identification paper) of involvement in ubiquitin-dependent protein catabolism. Correct but generic relative to the SCF-dependent catabolism term. Reason: Correct but a generic parent of GO:0031146 (SCF-dependent proteasomal catabolism), which more specifically captures FBXO22's role. Supporting Evidence: PMID:10531035 F-box proteins are one of the four subunits of ubiquitin protein ligases called SCFs |
| GO:0036211 protein modification process | TAS PMID:10531035 Identification of a family of human F-box proteins. | MARK AS OVER ANNOTATED | Summary: Legacy TAS annotation of involvement in protein modification, a very high-level parent term. Uninformative relative to the specific (poly)ubiquitination/SCF-catabolism annotations. Reason: Extremely generic parent term; the specific protein polyubiquitination and SCF-dependent catabolism annotations fully and more informatively capture FBXO22's role. Supporting Evidence: PMID:10531035 F-box proteins are one of the four subunits of ubiquitin protein ligases called SCFs |
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Download this section (compressed HTML)Q: What structural determinants in the FBXO22 C-terminal FIST-C domain dictate its broad substrate repertoire (KDM4A, methylated TP53, BACH1, MTOR, KLF4, NSP5), and how are degrons such as the oxidation-exposed BACH1 bZIP region recognized?
Q: How is FBXO22's choice of ubiquitin-chain linkage controlled (K48-linked degradative chains on NSP5/most substrates vs K27-linked chains on MTOR), given that chain topology is normally set by the E2/RBX1 module rather than the F-box adaptor?
Q: To what extent do the diverse FBXO22 substrate-degradation activities each contribute to the Tayoun-Maawali syndrome phenotype caused by biallelic FBXO22 loss of function?
Experiment: Reconstitute SCF(FBXO22) ubiquitination in vitro with purified SKP1-CUL1-RBX1, an E2, and candidate substrates to confirm direct, adaptor-dependent substrate selection and to map lysine sites and chain linkages for each substrate.
Experiment: Perform quantitative ubiquitinome and proteome profiling in FBXO22-knockout versus wild-type cells under basal, amino-acid-starved, and oxidative-stress conditions to define the endogenous, context-dependent FBXO22 substrate repertoire.
Experiment: Dissect the regulated nuclear/cytoplasmic partitioning of FBXO22 by mutating the EIF2AK4/GCN2 phosphosite (Thr-127) and quantifying the effect on substrate-specific degradation (e.g. nuclear KDM4A vs cytoplasmic MTOR).
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