FBXO36 (F-box only protein 36) is a small (188 aa) F-box protein that serves as a substrate-recognition component of an SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex (a Cullin-RING ligase 1, CRL1). It contains a single F-box domain (residues 91-137) through which it docks onto the adaptor SKP1, which in turn bridges to the scaffold CUL1; the catalytic RING subunit RBX1 recruits the ubiquitin-charged E2 enzyme. Within such complexes, the F-box protein contributes substrate selectivity rather than catalytic activity, directing assembly of polyubiquitin chains on bound substrates to target them for proteasomal degradation. FBXO36 belongs to the "FBXO" (F-box only, lacking recognizable C-terminal substrate-binding domains such as WD40 or LRR) class and remains very poorly characterized: no endogenous substrate, catalytic context, or subcellular localization has been experimentally validated. The strongest direct functional data come from a high-content siRNA screen of ubiquitin-pathway regulators of TNF signaling, in which FBXO36 depletion increased TNF-induced nuclear NF-kappa-B accumulation, prolonged late-stage I-kappa-B and JNK phosphorylation, sensitized cells to TNF+cycloheximide apoptosis, and raised steady-state beta-catenin levels; these phenotypes were interpreted as FBXO36 being a candidate modifier of SCF-dependent (e.g. SCF-betaTrCP) ubiquitin signaling, although no direct FBXO36 substrate was established. FBXO36 has also been noted among F-box genes with testis-enriched expression and appears in lower-confidence human genetic associations (a rare-variant lipoprotein-trait signal, lung-adenocarcinoma prognosis) that require replication. It is broadly but lowly expressed and has two annotated splice isoforms.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
| GO:0019005 SCF ubiquitin ligase complex | NAS PMID:34445249 The SCF Complex Is Essential to Maintain Genome and Chromoso... | ACCEPT | Summary: FBXO36 is the variable F-box (substrate-recognition) subunit of an SCF (SKP1-CUL1-F-box) E3 ubiquitin ligase complex, docking onto SKP1/CUL1 via its F-box domain. This is the core localization/complex membership for an F-box protein. Reason: Directly supported by the UniProt FUNCTION/SUBUNIT records (substrate-recognition component of SCF; interacts with SKP1 and CUL1) and by a dedicated SCF complex entry in ComplexPortal (CPX-7976, SCF E3 ubiquitin ligase complex, FBXO36 variant). Correct core complex membership. Supporting Evidence: file:human/FBXO36/FBXO36-uniprot.txt Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. file:human/FBXO36/FBXO36-uniprot.txt Directly interacts with SKP1 and CUL1. |
| GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | NAS PMID:34445249 The SCF Complex Is Essential to Maintain Genome and Chromoso... | ACCEPT | Summary: As the substrate-recognition subunit of an SCF E3 ligase, FBXO36 contributes to SCF-dependent ubiquitination of substrates that targets them for proteasomal degradation. This is the core biological process for an SCF F-box protein. Reason: Consistent with the canonical role of SCF complexes (poly-ubiquitination of substrates for proteasomal degradation, with the F-box protein determining substrate specificity) as described in the cited review and the UniProt annotation, and with the functional placement of FBXO36 as an F-box/SCF (CRL1) substrate-recognition receptor. The specific endogenous substrate(s) of FBXO36 are not yet established (Falcon-sourced literature confirms no validated substrate, though FBXO36 perturbation alters SCF-dependent TNF/NF-kappa-B signaling outputs), but membership in an SCF ligase directly entails this process. Supporting Evidence: file:human/FBXO36/FBXO36-uniprot.txt Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. PMID:34445249 primarily modify protein substrates with poly-ubiquitin chains to target them for proteasomal degradation. These SCF complexes are distinguishable by variable F-box proteins, which determine substrate specificity. file:human/FBXO36/FBXO36-deep-research-falcon.md although **no endogenous FBXO36 substrate has been directly validated** in the retrieved literature |
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Download this section (compressed HTML)Q: What are the physiological substrate(s) of the FBXO36-containing SCF complex, and in which tissues or cellular contexts does FBXO36 act as the substrate receptor? Is the TNF/NF-kappa-B and beta-catenin phenotype of FBXO36 depletion due to a direct SCF(FBXO36) substrate or an indirect effect on the SCF-betaTrCP axis?
Q: Does FBXO36 substrate recognition depend on a post-translational degron (e.g. phosphodegron) on its targets, as is typical for F-box proteins, and what determines its specificity given it lacks a recognizable C-terminal substrate-binding domain?
Q: Where does FBXO36 localize, and does its testis-enriched expression reflect a specific role in spermatogenesis?
Experiment: Affinity-purify epitope-tagged FBXO36 (and an F-box-deletion mutant that cannot assemble into SCF) followed by quantitative mass spectrometry, optionally combined with proteasome/neddylation inhibition, to identify candidate substrates that accumulate specifically with the assembly-competent receptor.
Experiment: Reconstitute the FBXO36 SCF complex in vitro (SKP1-CUL1-RBX1-FBXO36 with an E1, E2, ubiquitin and ATP) and perform ubiquitination assays on candidate substrates to confirm that FBXO36 confers substrate-dependent ubiquitin-chain assembly.
Experiment: Test in TNF-responsive cells whether the NF-kappa-B/JNK/beta-catenin phenotypes of FBXO36 depletion reflect a direct SCF(FBXO36) substrate (via ubiquitin-proteomics after FBXO36 perturbation) versus an indirect effect on SCF-betaTrCP-dependent I-kappa-B/beta-catenin turnover.
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