FBXO47

UniProt ID: Q5MNV8
Organism: Homo sapiens
Review Status: COMPLETE
πŸ“ Provide Detailed Feedback

Gene Description

FBXO47 (F-box only protein 47) is a 452-residue F-box-domain-containing protein (F-box at residues 41-91, plus an FBXO47-specific armadillo-like region) belonging to the FBXO ("F-box only") subfamily of F-box proteins, which canonically act as substrate-recognition receptors that, together with SKP1, CUL1 and RBX1, assemble SCF (SKP1-cullin-F-box) E3 ubiquitin ligase complexes. FBXO47 is strongly enriched in testis (HPA testis-enriched; expressed in male germline cells) and was originally cloned from a testis library. Functional studies in mouse have established FBXO47 as a germ-cell protein essential for meiotic prophase I in spermatocytes: Fbxo47-null males are infertile with spermatocytes arresting around late zygotene/pachytene, showing incomplete homologous synapsis, persistent autosomal gamma-H2AX, and failure to form XY bodies. Mechanistically, FBXO47 acts at meiotic chromosome subcompartments through SKP1-associated regulation: it localizes to the nuclear periphery and co-localizes with the shelterin component TRF2, where it promotes telomere-inner nuclear membrane attachment by stabilizing TRF2 (impairing TRF2 ubiquitination) during the bouquet stage; FBXO47 also interacts with SKP1 and the axis protein HORMAD1, contributing to HORMAD1 turnover and meiotic double-strand-break/ recombination homeostasis, and has been proposed to act in a centromeric SCF module that preserves centromeric SKP1 to support centromere pairing. Notably, several of its documented activities involve preventing rather than promoting substrate degradation (TRF2, SKP1), so its in vivo role may diverge from a classical SCF substrate receptor that drives degradation. A curated SCF E3 ligase complex variant containing FBXO47 has been recorded (ComplexPortal CPX-8006). FBXO47 maps to 17q12; human genetics associates the locus with azoospermia, and a missense variant has been reported as a candidate in autosomal recessive intellectual disability.

Proposed New Ontology Terms

telomere attachment to nuclear envelope involved in meiotic telomere clustering (bouquet formation)

Definition: A meiotic-prophase-I biological process in which telomeres become tethered to and cluster at the inner nuclear membrane (the bouquet stage), facilitating homologous chromosome pairing and recombination. FBXO47's best-supported in vivo role is promoting this telomere-inner-nuclear-membrane attachment via stabilization of the shelterin protein TRF2; no existing FBXO47 annotation captures this specific telomere-INM/bouquet process. Proposed label and definition only; no GO ID invented.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0019005 SCF ubiquitin ligase complex
NAS
PMID:34445249
The SCF Complex Is Essential to Maintain Genome and Chromoso...
KEEP AS NON CORE
Summary: ComplexPortal NAS assertion that FBXO47 is part of an SCF E3 ubiquitin ligase complex, consistent with its F-box domain and the curated FBXO47-variant SCF complex (CPX-8006). FBXO47's essential, experimentally established biology is in meiotic prophase, not canonical SCF catalysis, so this is retained as non-core.
Reason: FBXO47 has an F-box domain and a curated SCF-complex variant (CPX-8006), and UniProt states it is part of an SCF complex, but this is inferred by similarity (ECO:0000250) and asserted (NAS) from a general SCF review (PMID:34445249) rather than demonstrated for FBXO47 specifically. Falcon-sourced primary literature (Hua 2019; Ma 2024) shows FBXO47 physically interacts with the SCF core component SKP1 in germ cells, which biochemically supports SCF-machinery association; however the in vivo essential function is in meiotic prophase (telomere-INM integration via TRF2 stabilization, centromere pairing) and several activities prevent rather than promote substrate degradation, so SCF-complex membership is kept as a non-core annotation rather than promoted to a core function. This is consistent with the functional placement of FBXO47 as an F-box/SCF (CRL1) substrate-recognition module while keeping the meiotic biology central.
Supporting Evidence:
file:human/FBXO47/FBXO47-uniprot.txt
Part of a SCF (SKP1-cullin-F-box) protein ligase complex.
file:human/FBXO47/FBXO47-deep-research-falcon.md
Evidence from co-immunoprecipitation indicates FBXO47 **interacts with SKP1**, supporting a model in which FBXO47 can act as an F-box/SCF-associated factor
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
NAS
PMID:34445249
The SCF Complex Is Essential to Maintain Genome and Chromoso...
UNDECIDED
Summary: ComplexPortal NAS assertion that FBXO47 participates in SCF-dependent proteasomal protein degradation. This is inferred from F-box family membership and a general SCF review, and the UniProt FUNCTION itself is only a "Probably" statement by similarity; the experimentally documented FBXO47 function is in meiosis and may not proceed via canonical SCF-dependent degradation in vivo.
Reason: The annotation rests on family-level inference (UniProt FUNCTION is a "Probably recognizes... promotes their ubiquitination and degradation" ECO:0000250 statement) and an NAS citation to a general SCF review (PMID:34445249) that does not characterize FBXO47. Falcon-sourced primary literature complicates rather than confirms this term: while one study reports FBXO47 can target HORMAD1 for polyubiquitination and degradation (supporting some SCF-dependent catabolic activity), the best-characterized FBXO47 activities are protective/stabilizing (impairing ubiquitination of TRF2 and of SKP1), i.e. opposing degradation. The functionally validated in vivo role of FBXO47 (mouse knockouts) is in meiotic prophase / telomere-INM integration / centromere pairing; whether FBXO47's essential function proceeds via canonical SCF-dependent proteasomal degradation of substrates in vivo is not established. Marked UNDECIDED rather than ACCEPT/REMOVE because the underlying biochemical claim cannot be verified from the available evidence and the gene's documented activities point in both directions.
Supporting Evidence:
file:human/FBXO47/FBXO47-uniprot.txt
Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation.
file:human/FBXO47/FBXO47-deep-research-falcon.md
FBXO47 interacts with SKP1 and HORMAD1 and targets HORMAD1 for polyubiquitination and degradation in HEK293T cells

Core Functions

F-box-domain protein expressed in male germ cells that is essential for meiotic prophase I. FBXO47 acts at meiotic chromosome subcompartments through SKP1-associated regulation: it localizes to the nuclear periphery, co-localizes with the shelterin protein TRF2, and promotes telomere-inner nuclear membrane attachment (bouquet formation) by stabilizing TRF2 (impairing its ubiquitination); it also engages SKP1 and the axis protein HORMAD1 and is implicated in HORMAD1 turnover, homologous synapsis, and meiotic double-strand-break/recombination homeostasis. FBXO47 carries the F-box motif characteristic of SCF substrate-recognition receptors and is recorded as part of a curated FBXO47-variant SCF E3 ligase complex, but several of its documented activities prevent rather than promote substrate degradation, so its essential meiotic role may be partly distinct from canonical SCF-mediated proteasomal degradation; a direct in vivo SCF substrate-receptor catalytic role for FBXO47 has not been firmly established.

Supporting Evidence:
  • file:human/FBXO47/FBXO47-uniprot.txt
    Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation.
  • file:human/FBXO47/FBXO47-uniprot.txt
    DOMAIN 41..91
  • file:human/FBXO47/FBXO47-deep-research-falcon.md
    Most supported primary function: FBXO47 is a meiosis-associated F‑box protein that interacts with SCF machinery (via SKP1) and regulates key meiotic chromosomal proteins to ensure proper meiotic prophase progression.

References

Loading supporting content…

Download this section (compressed HTML)

Suggested Questions for Experts

Q: Does FBXO47 assemble a canonical SCF (SKP1-CUL1-RBX1) E3 ligase complex in germ cells and ubiquitinate substrates for proteasomal degradation, or does its essential meiotic function (telomere-INM integration, centromere pairing) operate via non-degradative, stabilizing activities (e.g. shielding TRF2 and SKP1 from ubiquitination)?

Q: Are the telomere-centric (TRF2/bouquet) and centromere-centric (SKP1/centromere pairing) models of FBXO47 reconcilable as a single SKP1-dependent meiotic surveillance activity, or do they reflect distinct chromosome-subcompartment functions and/or antibody/knockout-method artefacts?

Q: Is the human FBXO47 azoospermia association causal, and does the reported intellectual-disability missense variant (R182G) affect FBXO47 function or reflect linkage at 17q12?

Suggested Experiments

Experiment: Generate F-box-deletion or F-box point-mutant FBXO47 alleles (disrupting SKP1 binding) in a germ-cell or mouse model and assess whether SKP1/SCF association is required for telomere-INM integration, TRF2 stabilization, and centromere pairing, distinguishing degradative SCF function from non-degradative stabilizing roles.

Experiment: Perform affinity-purification mass spectrometry of FBXO47 from testis across meiotic stages to define its complex composition (SKP1/CUL1/RBX1 versus shelterin/axis partners such as TRF2 and HORMAD1) and candidate ubiquitination substrates, followed by in vitro reconstitution and ubiquitination/deubiquitination assays to test whether FBXO47 promotes or restrains substrate ubiquitination.

Experiment: Use super-resolution and electron microscopy of Fbxo47 wild-type versus knockout spermatocytes to map FBXO47 localization at telomere-INM versus centromeric/axis sites and directly test the telomere-centric versus centromere-centric models.

Deep Research

Falcon

(FBXO47-deep-research-falcon.md)

Loading supporting content…

Download this section (compressed HTML)

πŸ“š Additional Documentation

Pn Notes

(FBXO47-pn-notes.md)

Loading supporting content…

Download this section (compressed HTML)

πŸ“„ View Raw YAML

Loading supporting content…

Download this section (compressed HTML)