Glucokinase (hexokinase-4/HK4, hexokinase type IV) is an ATP-dependent hexose-phosphorylating enzyme (EC 2.7.1.1) expressed mainly in pancreatic beta cells and hepatocytes, where it catalyzes the first committed step of glucose utilization, the phosphorylation of D-glucose to D-glucose 6-phosphate. Unlike the other human hexokinases (HK1-3), glucokinase has a weak affinity for glucose (KM ~6 mM), exhibits sigmoidal/cooperative kinetics, and is not inhibited by its product glucose 6-phosphate. These properties make it the physiological glucose sensor whose activity varies steeply across the normal blood-glucose range; in the pancreatic beta cell it sets the threshold for glucose-stimulated insulin secretion, and in the liver it drives glucose uptake and glycogen synthesis. Hepatic glucokinase is allosterically regulated by the glucokinase regulatory protein (GCKR), which at low glucose binds glucokinase and sequesters the inactive complex in the nucleus, releasing it to the cytosol when glucose rises. Glucokinase can also phosphorylate D-mannose and D-fructose in vitro, but these activities are of minor physiological relevance. Mutations in GCK cause a spectrum of glycemic disorders; heterozygous inactivating mutations cause GCK-MODY (maturity-onset diabetes of the young type 2, mild fasting hyperglycemia), homozygous or biallelic loss causes permanent neonatal diabetes, and heterozygous activating (gain-of-function) mutations cause familial hyperinsulinemic hypoglycemia.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0004340
glucokinase activity
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phylogenetic (IBA) assertion of the core catalytic function, ATP-dependent phosphorylation of D-glucose to D-glucose 6-phosphate. This is GCK's defining molecular function and is independently confirmed by multiple human EXP/IDA/IMP annotations.
Reason: Glucokinase activity is the well-established core molecular function of GCK, supported by direct biochemical characterization of the purified enzyme and by the entire GCK-MODY/hyperinsulinism disease literature.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
Mediates the initial step of glycolysis by catalyzing
|
|
GO:0008865
fructokinase activity
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Phylogenetic assertion of fructokinase activity, propagated across the hexokinase family. GCK does phosphorylate D-fructose in vitro, but with very weak affinity (KM ~240 mM) that is far outside any physiological range, so this is a promiscuous side-activity rather than a physiological function.
Reason: A genuine in-vitro substrate promiscuity of the hexokinase family, but the extremely high KM for fructose means it is not a physiologically relevant function of GCK; keep as non-core.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
KM=240 mM for fructose (at 30 degrees Celsius and pH 7.5)
|
|
GO:0019158
mannokinase activity
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Phylogenetic assertion of mannokinase activity. GCK phosphorylates D-mannose in vitro with an affinity comparable to glucose (KM ~4.35 mM), but mannose is a quantitatively minor substrate physiologically.
Reason: A genuine in-vitro activity of the hexokinase family; kept as non-core because glucose phosphorylation is the physiologically dominant function.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
KM=4.35 mM for mannose (at 30 degrees Celsius and pH 7.5)
|
|
GO:0032473
cytoplasmic side of mitochondrial outer membrane
|
IBA
GO_REF:0000033 |
MARK AS OVER ANNOTATED |
Summary: Phylogenetic assertion of localization to the cytoplasmic side of the mitochondrial outer membrane, inherited from the hexokinase family. HK1-3 bind the outer mitochondrial membrane through an N-terminal hydrophobic anchor, but GCK lacks this anchor and is a soluble cytosolic (and regulated nuclear) protein.
Reason: Family-level over-propagation. Mitochondrial outer-membrane association is a property of HK1-3 (which have an N-terminal membrane-binding domain absent from GCK); GCK is documented as cytoplasmic and nuclear, not membrane-anchored.
Propagation Review
Root cause:
PROPAGATION BAD
Failure modes:
COMPARTMENT OR COMPLEX MISMATCH
Sources checked:
UniProtKB:P52789
Rat hexokinase-1 type; binds outer mitochondrial membrane via an N-terminal hydrophobic anchor that single-domain GCK lacks, so the compartment does not transfer correctly.
UniProtKB:M4FD55
Hexokinase-family source for the mitochondrial-membrane IBA; anchor-bearing, unlike cytosolic/nuclear GCK.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
SUBCELLULAR LOCATION: Cytoplasm
|
|
GO:0006096
glycolytic process
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phylogenetic assertion that GCK participates in glycolysis. GCK catalyzes the first, committed step of the glycolytic pathway (glucose to glucose 6-phosphate), which is well established.
Reason: Glucokinase catalyzes step 1 of glycolysis; this is a core biological process for the gene.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
Mediates the initial step of glycolysis by catalyzing
|
|
GO:0005829
cytosol
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phylogenetic assertion of cytosolic localization, consistent with human HPA immunofluorescence (IDA) and the well-documented cytosolic location of active glucokinase.
Reason: Glucokinase is a cytosolic enzyme (with regulated nuclear sequestration in hepatocytes); cytosol is its principal site of catalytic action.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
SUBCELLULAR LOCATION: Cytoplasm
|
|
GO:0006006
glucose metabolic process
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phylogenetic assertion that GCK participates in glucose metabolism. As the enzyme catalyzing the rate-limiting first step of glucose utilization in liver and beta cells, this is a core biological process.
Reason: Glucokinase is a rate-limiting determinant of glucose metabolism in liver and pancreatic beta cells.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
rate-limiting step in glucose metabolism in these tissues
|
|
GO:0051156
glucose 6-phosphate metabolic process
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phylogenetic assertion linking GCK to glucose 6-phosphate metabolism. GCK produces glucose 6-phosphate, so it directly contributes to G6P metabolism; this is corroborated by human IMP annotations.
Reason: The product of the GCK reaction is glucose 6-phosphate; participation in G6P metabolic process is a direct and accurate consequence of its activity.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
phosphorylation of D-glucose to D-glucose 6-phosphate
|
|
GO:0001678
intracellular glucose homeostasis
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phylogenetic assertion that GCK contributes to intracellular glucose homeostasis, consistent with its role as the glucose sensor controlling hepatic glucose uptake and beta-cell insulin secretion.
Reason: As the tissue glucose sensor, GCK is a central determinant of cellular and whole-body glucose homeostasis.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
GCK acts as a glucose sensor in the pancreatic beta
|
|
GO:0050796
regulation of insulin secretion
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phylogenetic assertion that GCK regulates insulin secretion. In the beta cell, glucokinase sets the threshold for glucose-stimulated insulin secretion, confirmed by human IMP studies of GCK mutation carriers.
Reason: Beta-cell glucokinase controls the glucose threshold for insulin secretion; supported by both phylogenetic inference and human physiology studies.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
modulating insulin secretion
|
|
GO:0001678
intracellular glucose homeostasis
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: InterPro2GO electronic mapping of the hexokinase domain to intracellular glucose homeostasis. Redundant with the curated IBA annotation to the same term and consistent with GCK's role as the glucose sensor.
Reason: Accurate for GCK; duplicate of the curated intracellular glucose homeostasis annotation.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
GCK acts as a glucose sensor in the pancreatic beta
|
|
GO:0004396
hexokinase activity
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Electronic assignment of the parent hexokinase activity (EC 2.7.1.1) term. GCK is hexokinase-4, so hexokinase activity is correct, though glucokinase activity (GO:0004340) is the more specific and preferred term.
Reason: Correct broader molecular-function term; GCK is a bona fide hexokinase (EC 2.7.1.1). Retained as an accurate parent of the specific glucokinase activity.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
Catalyzes the phosphorylation of hexose, such as D-glucose,
|
|
GO:0005524
ATP binding
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: InterPro-based electronic assignment of ATP binding. ATP is the phosphate donor co-substrate of glucokinase and ATP binding is directly demonstrated by human IDA annotations and crystal structures with bound ATP analog.
Reason: GCK binds ATP as its phosphoryl-donor substrate; well supported by structure and IDA.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
KM=4.5 mM for ATP (at pH 7)
|
|
GO:0005536
D-glucose binding
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: InterPro-based electronic assignment of D-glucose binding, the substrate-binding function of glucokinase, corroborated by human IDA annotations and glucose-bound crystal structures.
Reason: Glucose binding is a core molecular activity of GCK, directly demonstrated experimentally.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
COMPLEX WITH GLUCOSE
|
|
GO:0005634
nucleus
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Electronic assignment of nuclear localization. In hepatocytes, glucokinase is sequestered in the nucleus in complex with GCKR at low glucose, so this location is real but conditional/regulated. Corroborated by human EXP annotations.
Reason: Regulated nuclear sequestration of hepatic GCK by GCKR is well documented; the nuclear location is genuine although condition-dependent.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
the inactive complex is recruited to the
|
|
GO:0005737
cytoplasm
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Electronic assignment of cytoplasmic localization, the principal compartment of active glucokinase. Corroborated by human EXP annotations and HPA immunofluorescence.
Reason: Cytoplasm/cytosol is the main site of active GCK; well supported.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
SUBCELLULAR LOCATION: Cytoplasm
|
|
GO:0005739
mitochondrion
|
IEA
GO_REF:0000120 |
MARK AS OVER ANNOTATED |
Summary: Electronic assignment of mitochondrial localization. This is inherited from the hexokinase family / by-similarity from HK1-type orthologs; mitochondrial outer-membrane binding is a property of HK1-3 that have an N-terminal membrane anchor absent from GCK, which is cytosolic and nuclear.
Reason: GCK lacks the N-terminal mitochondrial-binding anchor of HK1-3; the mitochondrial annotation is a family/by-similarity over-propagation rather than a GCK-specific location.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
SUBCELLULAR LOCATION: Cytoplasm
|
|
GO:0005975
carbohydrate metabolic process
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: InterPro-based electronic assignment of the broad carbohydrate metabolic process term. Accurate but general; more specific glucose metabolic/glycolytic terms are annotated.
Reason: Correct high-level process term; a valid parent of the more specific glucose metabolism annotations.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
Carbohydrate metabolism; hexose metabolism
|
|
GO:0006006
glucose metabolic process
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: ARBA machine-learning electronic assignment of glucose metabolic process, redundant with the curated IBA annotation and accurate for GCK.
Reason: Correct; duplicate of the curated glucose metabolic process annotation.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
rate-limiting step in glucose metabolism in these tissues
|
|
GO:0006096
glycolytic process
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Electronic assignment of glycolytic process via UniPathway mapping, redundant with the curated IBA annotation. GCK catalyzes the first step of glycolysis.
Reason: Correct; duplicate of the curated glycolytic process annotation.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
Mediates the initial step of glycolysis by catalyzing
|
|
GO:0006163
purine nucleotide metabolic process
|
IEA
GO_REF:0000117 |
MARK AS OVER ANNOTATED |
Summary: ARBA electronic assignment of purine nucleotide metabolic process. This almost certainly derives from GCK using ATP (a purine nucleotide) as co-substrate; consuming ATP as a phosphate donor does not make GCK a participant in purine nucleotide metabolism.
Reason: Over-interpretation of ATP co-substrate usage. GCK does not metabolize purine nucleotides; ATP is a universal phosphoryl donor and this term misrepresents the gene's biological role.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
a D-hexose + ATP = a D-hexose 6-phosphate + ADP
|
|
GO:0008865
fructokinase activity
|
IEA
GO_REF:0000116 |
KEEP AS NON CORE |
Summary: RHEA-based electronic assignment of fructokinase activity (D-fructose + ATP reaction). Same weak in-vitro promiscuous activity as the IBA/EXP fructokinase annotations (KM ~240 mM), not physiologically relevant.
Reason: Genuine in-vitro side-activity but physiologically negligible due to the very high KM for fructose.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
Reaction=D-fructose + ATP = D-fructose 6-phosphate + ADP
|
|
GO:0019158
mannokinase activity
|
IEA
GO_REF:0000116 |
KEEP AS NON CORE |
Summary: RHEA-based electronic assignment of mannokinase activity (D-mannose + ATP reaction). GCK phosphorylates mannose in vitro, but this is a minor physiological substrate.
Reason: Genuine in-vitro activity but not the physiologically dominant function of GCK.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
Reaction=D-mannose + ATP = D-mannose 6-phosphate + ADP
|
|
GO:0032024
positive regulation of insulin secretion
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: ARBA electronic assignment of positive regulation of insulin secretion, redundant with the human IMP annotations. Glucokinase drives glucose-stimulated insulin secretion in the beta cell.
Reason: Correct; duplicate of curated IMP annotations for positive regulation of insulin secretion.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
modulating insulin secretion
|
|
GO:0042593
glucose homeostasis
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: ARBA electronic assignment of glucose homeostasis, redundant with the human IMP annotations. GCK is a central determinant of whole-body glucose homeostasis.
Reason: Correct; duplicate of curated glucose homeostasis annotations.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
insulin-sensitive determinant of hepatic glucose usage
|
|
GO:0046496
nicotinamide nucleotide metabolic process
|
IEA
GO_REF:0000117 |
REMOVE |
Summary: ARBA electronic assignment of nicotinamide nucleotide (NAD/NADP) metabolic process. GCK has no role in NAD/NADP metabolism; its reaction consumes ATP and produces glucose 6-phosphate, and this term appears to be a spurious machine-learning mapping.
Reason: Demonstrably wrong electronic inference. Glucokinase does not participate in nicotinamide nucleotide (NAD/NADP) metabolism; there is no biochemical basis for this ARBA mapping, which should be removed.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
a D-hexose + ATP = a D-hexose 6-phosphate + ADP
|
|
GO:0005515
protein binding
|
IPI
PMID:11522786 Characterization of glucokinase-binding protein epitopes by ... |
MARK AS OVER ANNOTATED |
Summary: IntAct binary-interaction annotation. PMID:11522786 identified PFKFB1 (6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase) as a glucokinase interaction partner via phage-display and yeast two-hybrid. The interaction is real and biologically interesting, but the generic protein binding term is uninformative as a molecular function.
Reason: Per curation guidelines, bare protein binding (GO:0005515) is not an informative molecular function. The underlying PFKFB1 (and GCKR) interaction is captured in the gene description/notes; the IPI itself is retained but flagged as over-annotated.
Supporting Evidence:
PMID:11522786
The second consensus motif, SLKVWT, showed a complete homology to the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase
|
|
GO:0005515
protein binding
|
IPI
PMID:32296183 A reference map of the human binary protein interactome. |
MARK AS OVER ANNOTATED |
Summary: IntAct binary-interaction annotation from the HuRI human interactome map (PMID:32296183), a high-throughput yeast two-hybrid screen. The generic protein binding term does not convey a specific molecular function.
Reason: Bare protein binding (GO:0005515) is uninformative per curation guidelines; derived from a proteome-scale binary interactome screen. Retained but flagged as over-annotated.
Supporting Evidence:
PMID:32296183
a human 'all-by-all' reference interactome map of human binary protein interactions, or 'HuRI'
|
|
GO:0004340
glucokinase activity
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Electronic (RHEA/UniProt combined) assignment of glucokinase activity, the specific EC 2.7.1.1 D-glucose + ATP reaction. Redundant with the many curated EXP/IDA/IMP/IBA glucokinase activity annotations.
Reason: Correct and specific core molecular function; duplicate of curated glucokinase activity annotations.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
Reaction=D-glucose + ATP = D-glucose 6-phosphate + ADP
|
|
GO:0005829
cytosol
|
IEA
GO_REF:0000107 |
ACCEPT |
Summary: Ensembl-projected electronic assignment of cytosolic localization from the mouse ortholog. Consistent with the human IDA (HPA) and IBA cytosol annotations.
Reason: Cytosol is the principal location of active glucokinase; well supported across multiple evidence lines.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
SUBCELLULAR LOCATION: Cytoplasm
|
|
GO:0070509
calcium ion import
|
IEA
GO_REF:0000107 |
MARK AS OVER ANNOTATED |
Summary: Ensembl-projected electronic annotation of calcium ion import from the mouse ortholog. Glucokinase is a cytosolic kinase with no transport activity; any link to calcium import would be an indirect downstream consequence of glucose-stimulated insulin secretion physiology, not a function of GCK itself.
Reason: Over-propagated electronic inference. GCK does not import calcium; this is at best an indirect, distal physiological association projected from the ortholog and does not represent a molecular activity or direct process role of GCK.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
Catalyzes the phosphorylation of hexose, such as D-glucose,
|
|
GO:0061621
canonical glycolysis
|
TAS
Reactome:R-HSA-70171 |
ACCEPT |
Summary: Reactome traceable-author-statement annotation placing GCK in canonical glycolysis (the Glycolysis pathway). GCK catalyzes the committed first step of glucose catabolism via glycolysis.
Reason: GCK performs the first step of glycolysis; canonical glycolysis is an accurate, curator-asserted process.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
Mediates the initial step of glycolysis by catalyzing
|
|
GO:0019318
hexose metabolic process
|
IEA
GO_REF:0000041 |
ACCEPT |
Summary: UniPathway-based electronic assignment of hexose metabolic process. GCK phosphorylates hexoses (glucose, mannose, fructose) as the entry step of hexose utilization; accurate but general.
Reason: Correct high-level process; a valid parent of the more specific glucose metabolic process annotations.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
Carbohydrate metabolism; hexose metabolism
|
|
GO:0004340
glucokinase activity
|
TAS
Reactome:R-HSA-5621918 |
ACCEPT |
Summary: Reactome TAS annotation of glucokinase activity, from the reaction describing defective GCK failing to phosphorylate glucose to G6P. Correct core molecular function.
Reason: Curator-traceable assertion of the core glucokinase activity; consistent with all other evidence.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
Reaction=D-glucose + ATP = D-glucose 6-phosphate + ADP
|
|
GO:0004340
glucokinase activity
|
TAS
Reactome:R-HSA-70420 |
ACCEPT |
Summary: Reactome TAS annotation of glucokinase activity, from the reaction in which HK1,2,3,GCK,HKDC1 phosphorylate glucose to form G6P. Correct core molecular function.
Reason: Curator-traceable assertion of the core glucokinase activity.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
Reaction=D-glucose + ATP = D-glucose 6-phosphate + ADP
|
|
GO:0005829
cytosol
|
IDA
GO_REF:0000052 |
ACCEPT |
Summary: Human Protein Atlas immunofluorescence (IDA) localizing GCK to the cytosol. This is a direct human experimental localization consistent with the enzyme's soluble cytosolic nature.
Reason: Direct immunofluorescence evidence for cytosolic localization; the principal compartment of active glucokinase.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
SUBCELLULAR LOCATION: Cytoplasm
|
|
GO:0004340
glucokinase activity
|
EXP
PMID:7742312 Sugar specificity of human beta-cell glucokinase: correlatio... |
ACCEPT |
Summary: Steady-state kinetic characterization of purified human beta-cell glucokinase phosphorylating glucose (and other sugars), establishing its glucokinase activity and the diagnostic weak glucose affinity (KM ~6 mM) with cooperative kinetics.
Reason: Direct experimental demonstration of glucokinase activity on the human enzyme; a primary source for the core molecular function.
Supporting Evidence:
PMID:7742312
glucokinase phosphorylated the sugars in the order glucose = mannose > deoxyglucose > fructose = glucosamine
|
|
GO:0004396
hexokinase activity
|
EXP
PMID:11916951 The second activating glucokinase mutation (A456V): implicat... |
ACCEPT |
Summary: Functional characterization of an activating GCK mutant (A456V) using the purified recombinant enzyme, measuring glucose phosphorylation kinetics (glucose S0.5, kcat). Confirms hexokinase/glucokinase activity of human GCK.
Reason: Experimental measurement of GCK glucose-phosphorylating (hexokinase) activity on the purified human enzyme.
Supporting Evidence:
PMID:11916951
The purified recombinant glutathionyl S-transferase fusion protein of the A456V glucokinase revealed a decreased glucose S(0.5)
|
|
GO:0004396
hexokinase activity
|
EXP
PMID:15277402 Severe persistent hyperinsulinemic hypoglycemia due to a de ... |
ACCEPT |
Summary: Functional study of the activating GCK-Y214C mutant, measuring glucose affinity, cooperativity and kcat of the purified enzyme, confirming GCK's glucose-phosphorylating (hexokinase) activity.
Reason: Experimental measurement of GCK enzymatic activity on the purified human enzyme; supports the hexokinase/glucokinase molecular function.
Supporting Evidence:
PMID:15277402
Functional studies of purified recombinant glutathionyl S-transferase fusion protein of GK-Y214C showed a sixfold increase in its affinity for glucose
|
|
GO:0004396
hexokinase activity
|
EXP
PMID:17082186 Biochemical basis of glucokinase activation and the regulati... |
ACCEPT |
Summary: Transient-kinetics analysis of glucose binding and turnover for wild-type and activating GCK mutants, characterizing the enzyme's glucose-phosphorylating activity and its GKRP regulation.
Reason: Direct kinetic characterization of GCK hexokinase activity on purified enzyme.
Supporting Evidence:
PMID:17082186
the transient kinetics of glucose binding for activating mutations follows a general two-step mechanism
|
|
GO:0004396
hexokinase activity
|
EXP
PMID:18322640 Biochemical characterization of novel glucokinase mutations ... |
ACCEPT |
Summary: Biochemical characterization of six MODY2 GCK mutants showing reduced enzymatic activity, based on assays of the recombinant enzyme; confirms GCK's glucose-phosphorylating (hexokinase) activity.
Reason: Experimental enzyme-activity assays of human GCK; supports the hexokinase/glucokinase molecular function.
Supporting Evidence:
PMID:18322640
All these mutations produced enzymes that presented reduced enzymatic activity in various degrees
|
|
GO:0004396
hexokinase activity
|
EXP
PMID:19146401 Activating mutations in the human glucokinase gene revealed ... |
ACCEPT |
Summary: Identification and kinetic characterization of 11 activating GCK mutations, reporting kcat/K0.5 for glucose on the recombinant enzyme; confirms GCK's glucose-phosphorylating (hexokinase) activity.
Reason: Experimental measurement of GCK glucose-phosphorylating activity on the human enzyme.
Supporting Evidence:
PMID:19146401
I211F is the most active variant identified to date, with a k(cat)/K(0.5,glucose) value
|
|
GO:0004396
hexokinase activity
|
EXP
PMID:25015100 Phenotypic severity of homozygous GCK mutations causing neon... |
ACCEPT |
Summary: Kinetic and thermostability analysis of 16 homozygous GCK missense mutants (relative activity index), assaying the recombinant human enzyme's glucose-phosphorylating activity.
Reason: Experimental enzyme-activity measurement on purified human GCK; supports the hexokinase/glucokinase molecular function.
Supporting Evidence:
PMID:25015100
Recombinant mutant GCK proteins were analyzed for kinetic and thermostability characteristics and assigned a relative activity index
|
|
GO:0004396
hexokinase activity
|
EXP
PMID:8325892 Structure/function studies of human beta-cell glucokinase. E... |
ACCEPT |
Summary: Structure/function study expressing native and mutant human beta-cell glucokinase and measuring Vmax and Km for glucose, directly characterizing GCK's glucose-phosphorylating (hexokinase) activity.
Reason: Direct experimental characterization of GCK enzymatic activity on the human enzyme.
Supporting Evidence:
PMID:8325892
a Vmax that was 20-100% of normal but a Km for glucose that was 8-14-fold greater than the native enzyme
|
|
GO:0005634
nucleus
|
EXP
PMID:10456334 Glucokinase regulatory protein is essential for the proper s... |
ACCEPT |
Summary: Experimental demonstration that liver glucokinase concentrates in the nucleus of hepatocytes at low glucose, in a GCKR-dependent manner. Establishes the regulated nuclear localization of hepatic GCK.
Reason: Direct experimental evidence for regulated nuclear localization of GCK via GCKR binding; genuine although condition-dependent.
Supporting Evidence:
PMID:10456334
concentrated in the nucleus of cultured rat hepatocytes at low glucose and translocated to the cytoplasm at high glucose
|
|
GO:0005634
nucleus
|
EXP
PMID:24187134 Identification of the ubiquitin-like domain of midnolin as a... |
ACCEPT |
Summary: Fluorescence-microscopy study of GCK and its interaction partner midnolin in pancreatic beta cells, consistent with a nuclear/cytoplasmic distribution of glucokinase.
Reason: Supports nuclear (and cytoplasmic) localization of GCK; consistent with its regulated subcellular distribution.
Supporting Evidence:
PMID:24187134
revealed localization of midnolin in nucleus and cytoplasm and co-localization with glucokinase in pancreatic beta cells
|
|
GO:0005737
cytoplasm
|
EXP
PMID:10456334 Glucokinase regulatory protein is essential for the proper s... |
ACCEPT |
Summary: Experimental demonstration that liver glucokinase translocates to the cytoplasm at high glucose, establishing cytoplasm as the compartment of active hepatic GCK.
Reason: Direct experimental evidence for cytoplasmic localization of active GCK.
Supporting Evidence:
PMID:10456334
concentrated in the nucleus of cultured rat hepatocytes at low glucose and translocated to the cytoplasm at high glucose
|
|
GO:0005737
cytoplasm
|
EXP
PMID:24187134 Identification of the ubiquitin-like domain of midnolin as a... |
ACCEPT |
Summary: Fluorescence-microscopy evidence for cytoplasmic (and nuclear) localization of glucokinase in pancreatic beta cells.
Reason: Supports cytoplasmic localization of GCK; consistent with the enzyme's soluble cytosolic nature.
Supporting Evidence:
PMID:24187134
revealed localization of midnolin in nucleus and cytoplasm and co-localization with glucokinase in pancreatic beta cells
|
|
GO:0005739
mitochondrion
|
ISS
GO_REF:0000024 |
MARK AS OVER ANNOTATED |
Summary: ISS transfer of mitochondrial localization from an ortholog (UniProtKB:P17712, rat hexokinase). Mitochondrial outer-membrane binding is a documented property of HK1-3 (which have an N-terminal membrane anchor) but not of GCK, which lacks this anchor and is cytosolic/nuclear.
Reason: The ISS source is a membrane-anchored hexokinase; GCK lacks the N-terminal mitochondrial-binding domain, so mitochondrial localization is a family-level over-transfer rather than a GCK-specific location.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
SUBCELLULAR LOCATION: Cytoplasm
|
|
GO:0008865
fructokinase activity
|
EXP
PMID:7742312 Sugar specificity of human beta-cell glucokinase: correlatio... |
KEEP AS NON CORE |
Summary: Kinetic measurements showing purified human beta-cell glucokinase phosphorylates D-fructose in vitro, but with very weak affinity (KM ~240 mM), far above any physiological fructose concentration.
Reason: A genuine, experimentally measured in-vitro activity, but physiologically negligible given the extremely high KM for fructose; kept as non-core.
Supporting Evidence:
PMID:7742312
glucokinase phosphorylated the sugars in the order glucose = mannose > deoxyglucose > fructose = glucosamine
|
|
GO:0019158
mannokinase activity
|
EXP
PMID:7742312 Sugar specificity of human beta-cell glucokinase: correlatio... |
KEEP AS NON CORE |
Summary: Kinetic measurements showing purified human beta-cell glucokinase phosphorylates D-mannose in vitro with an affinity comparable to glucose (KM ~4.35 mM), a genuine but quantitatively minor physiological substrate.
Reason: An experimentally measured in-vitro activity of GCK; kept as non-core because glucose is the physiologically dominant substrate.
Supporting Evidence:
PMID:7742312
glucokinase phosphorylated the sugars in the order glucose = mannose > deoxyglucose > fructose = glucosamine
|
|
GO:0009749
response to glucose
|
ISS
GO_REF:0000024 |
ACCEPT |
Summary: ISS transfer of response to glucose from an ortholog. GCK function and protein level are modulated by glucose (glucose promotes the active cytosolic state and stabilizes the enzyme), so involvement in the cellular response to glucose is biologically reasonable.
Reason: Consistent with GCK's role as a glucose sensor whose activity, localization and stability respond to glucose; a reasonable orthology-based transfer.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
is effective only when glucose is abundant
|
|
GO:0141089
glucose sensor activity
|
ISS
GO_REF:0000024 |
ACCEPT |
Summary: ISS transfer of the specific molecular-function term glucose sensor activity. This precisely captures GCK's defining physiological role, its weak glucose affinity and cooperative kinetics allow it to function as the cellular glucose sensor setting the threshold for insulin secretion and hepatic glucose uptake.
Reason: Glucose sensor activity is the most specific and biologically apt molecular-function term for GCK; strongly supported by its kinetic properties and physiology.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
GCK acts as a glucose sensor in the pancreatic beta
|
|
GO:0006007
glucose catabolic process
|
IMP
PMID:12941786 Insights into the biochemical and genetic basis of glucokina... |
ACCEPT |
Summary: IMP annotation from characterization of an activating hypoglycemia mutation (T65I) showing GCK catalyzes the rate-limiting step of beta-cell glucose metabolism/catabolism. GCK initiates glucose catabolism via glycolysis.
Reason: GCK performs the committed, rate-limiting first step of glucose catabolism; supported by mutation phenotype analysis.
Supporting Evidence:
PMID:12941786
catalyzes the rate-limiting step for beta-cell glucose metabolism
|
|
GO:0004340
glucokinase activity
|
IMP
PMID:19146401 Activating mutations in the human glucokinase gene revealed ... |
ACCEPT |
Summary: IMP annotation of glucokinase activity based on activating GCK mutations that alter the enzyme's glucose-phosphorylating kinetics (measured as kcat/K0.5,glucose).
Reason: Mutation-based evidence directly tying sequence changes to altered glucokinase activity; core molecular function.
Supporting Evidence:
PMID:19146401
I211F is the most active variant identified to date, with a k(cat)/K(0.5,glucose) value
|
|
GO:0051156
glucose 6-phosphate metabolic process
|
IMP
PMID:19146401 Activating mutations in the human glucokinase gene revealed ... |
ACCEPT |
Summary: IMP annotation linking GCK to glucose 6-phosphate metabolic process, based on activating mutations altering the glucose-phosphorylating (G6P-producing) activity of the enzyme.
Reason: GCK produces glucose 6-phosphate; mutation effects on its activity directly support participation in G6P metabolism.
Supporting Evidence:
PMID:19146401
activating mutations in the human glk gene
|
|
GO:0004340
glucokinase activity
|
IMP
PMID:18322640 Biochemical characterization of novel glucokinase mutations ... |
ACCEPT |
Summary: IMP annotation of glucokinase activity from biochemical characterization of MODY2 mutants that reduce the enzyme's activity to varying degrees.
Reason: Mutation-phenotype evidence directly linking GCK sequence to glucokinase activity; core molecular function.
Supporting Evidence:
PMID:18322640
All these mutations produced enzymes that presented reduced enzymatic activity in various degrees
|
|
GO:0051156
glucose 6-phosphate metabolic process
|
IMP
PMID:18322640 Biochemical characterization of novel glucokinase mutations ... |
ACCEPT |
Summary: IMP annotation linking GCK to glucose 6-phosphate metabolic process based on MODY2 mutations reducing its G6P-producing enzymatic activity.
Reason: The GCK product is glucose 6-phosphate; mutation effects on activity support participation in G6P metabolism.
Supporting Evidence:
PMID:18322640
mutations in the glucokinase (GCK) gene that result in impaired glucokinase activity
|
|
GO:0004340
glucokinase activity
|
IDA
PMID:22611063 Insights into the pathogenicity of rare missense GCK variant... |
ACCEPT |
Summary: IDA of glucokinase activity from spectrophotometric G6P-dehydrogenase-coupled assays of GST-tagged wild-type and mutant human GCK proteins.
Reason: Direct in-vitro assay of GCK glucose-phosphorylating activity on the purified human enzyme; core molecular function.
Supporting Evidence:
PMID:22611063
GCK activity was measured spectrophotometrically using glucose 6-phosphate dehydrogenase-coupled assays
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-5621918 |
ACCEPT |
Summary: Reactome TAS annotation of cytosolic localization, consistent with the cytosolic location of active glucokinase.
Reason: Cytosol is the principal compartment of active GCK; curator-traceable assertion consistent with all other evidence.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
SUBCELLULAR LOCATION: Cytoplasm
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-170796 |
ACCEPT |
Summary: Reactome TAS annotation of nucleoplasmic localization, from the reaction transporting the GCK1:GCKR complex from cytosol to nucleoplasm. Reflects the regulated nuclear sequestration of hepatic GCK bound to GCKR at low glucose.
Reason: Consistent with documented GCKR-dependent nuclear sequestration of hepatic glucokinase; genuine although condition-dependent.
Supporting Evidence:
PMID:10456334
concentrated in the nucleus of cultured rat hepatocytes at low glucose and translocated to the cytoplasm at high glucose
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-170810 |
ACCEPT |
Summary: Reactome TAS annotation of nucleoplasmic localization, from the reaction dissociating the nucleoplasmic GCK1:GCKR complex. Reflects regulated nuclear sequestration of hepatic GCK.
Reason: Consistent with GCKR-dependent nuclear sequestration of hepatic glucokinase.
Supporting Evidence:
PMID:10456334
concentrated in the nucleus of cultured rat hepatocytes at low glucose and translocated to the cytoplasm at high glucose
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-170825 |
ACCEPT |
Summary: Reactome TAS annotation of nucleoplasmic localization, from the reaction exporting GCK1 from the nucleus. Reflects the regulated nuclear/cytosolic shuttling of hepatic GCK.
Reason: Consistent with the documented regulated nuclear localization/export of hepatic glucokinase via GCKR.
Supporting Evidence:
PMID:10456334
concentrated in the nucleus of cultured rat hepatocytes at low glucose and translocated to the cytoplasm at high glucose
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-170796 |
ACCEPT |
Summary: Reactome TAS annotation of cytosolic localization, from the reaction transporting GCK1:GCKR from cytosol to nucleoplasm; the cytosol is the origin compartment for active glucokinase.
Reason: Cytosol is the principal compartment of active GCK; consistent with all other localization evidence.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
SUBCELLULAR LOCATION: Cytoplasm
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-170799 |
ACCEPT |
Summary: Reactome TAS annotation of cytosolic localization, from the reaction describing the cytosolic GCK1:GKRP complex equilibrium.
Reason: Cytosolic location of GCK; curator-traceable and consistent with other evidence.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
SUBCELLULAR LOCATION: Cytoplasm
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-170824 |
ACCEPT |
Summary: Reactome TAS annotation of cytosolic localization, from the reaction forming the GCK1:GKRP complex from cytosolic glucokinase and GKRP.
Reason: Cytosolic location of GCK; consistent with other localization evidence.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
SUBCELLULAR LOCATION: Cytoplasm
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-170825 |
ACCEPT |
Summary: Reactome TAS annotation of cytosolic localization, from the reaction exporting GCK1 from the nucleus back to the cytosol.
Reason: Cytosolic location of active GCK; consistent with the regulated nuclear/cytosolic shuttling of hepatic glucokinase.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
SUBCELLULAR LOCATION: Cytoplasm
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-5661474 |
ACCEPT |
Summary: Reactome TAS annotation of cytosolic localization, from the (disease) reaction of defective nuclear pore transport of GCK1:GKRP; cytosol is the origin compartment.
Reason: Cytosolic location of GCK; consistent with other localization evidence.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
SUBCELLULAR LOCATION: Cytoplasm
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-70420 |
ACCEPT |
Summary: Reactome TAS annotation of cytosolic localization, from the reaction in which HK1,2,3,GCK,HKDC1 phosphorylate glucose to G6P in the cytosol.
Reason: Cytosol is the site where GCK phosphorylates glucose; consistent with all other evidence.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
SUBCELLULAR LOCATION: Cytoplasm
|
|
GO:0006110
regulation of glycolytic process
|
NAS
PMID:9570959 Organization of the human glucokinase regulator gene GCKR. |
ACCEPT |
Summary: NAS annotation citing a paper on the GCKR gene structure, asserting that glucokinase regulates insulin secretion in response to blood glucose. As the rate-limiting, flux-controlling enzyme of glucose entry into glycolysis in liver and beta cells, GCK regulates glycolytic flux.
Reason: GCK is the flux-controlling first enzyme of glycolysis in its tissues, so regulation of glycolytic process is a reasonable, non-experimental (NAS) assertion of its role.
Supporting Evidence:
PMID:9570959
Glucokinase plays an important role in regulating insulin secretion in response to changes in blood glucose levels
|
|
GO:0032869
cellular response to insulin stimulus
|
ISS
GO_REF:0000024 |
ACCEPT |
Summary: ISS transfer of cellular response to insulin stimulus from an ortholog. In the liver, GCK expression is induced by insulin (insulin-dependent regulation via the alternative liver promoter), so its expression/activity responds to insulin.
Reason: Hepatic GCK is insulin-regulated (insulin induces liver GCK); a reasonable orthology-based transfer consistent with UniProt.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
hexokinase gene to be regulated by insulin in the liver
|
|
GO:0042593
glucose homeostasis
|
IMP
PMID:20668700 Effects of GCK, GCKR, G6PC2 and MTNR1B variants on glucose m... |
ACCEPT |
Summary: IMP annotation from a genetic-association study showing common GCK variants (rs1799884) modulate fasting glucose and insulin secretion, supporting GCK's role in glucose homeostasis.
Reason: Human genetic variation in GCK affects fasting glucose levels, consistent with GCK being a determinant of glucose homeostasis.
Supporting Evidence:
PMID:20668700
GCK, G6PC2 and MTNR1B variants modulated fasting glucose levels
|
|
GO:0044320
cellular response to leptin stimulus
|
ISS
GO_REF:0000024 |
MARK AS OVER ANNOTATED |
Summary: ISS transfer of cellular response to leptin stimulus from an ortholog (UniProtKB:P17712). There is no direct human evidence that GCK participates in leptin signaling; this is a distal orthology-based association rather than a direct molecular role of glucokinase.
Reason: Weakly supported ISS transfer. No direct evidence for a GCK role in leptin response in the cited human record; treated as an over-annotation pending experimental support.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
Catalyzes the phosphorylation of hexose, such as D-glucose,
|
|
GO:0050796
regulation of insulin secretion
|
IMP
PMID:20668700 Effects of GCK, GCKR, G6PC2 and MTNR1B variants on glucose m... |
ACCEPT |
Summary: IMP annotation from a genetic-association study showing GCK variants affect first- and second-phase insulin secretion, supporting GCK's role in regulating insulin secretion.
Reason: Human GCK genetic variation affects insulin secretion phases, consistent with beta-cell GCK regulating insulin secretion.
Supporting Evidence:
PMID:20668700
GCK and G6PC2 genetic variants were associated to both first- and second-phases insulin secretion
|
|
GO:0004340
glucokinase activity
|
IDA
PMID:16173921 Effects of novel maturity-onset diabetes of the young (MODY)... |
ACCEPT |
Summary: IDA of glucokinase activity from enzymatic assays of affinity-purified recombinant human islet GCK (wild-type and MODY2 mutants), directly measuring the glucose-phosphorylating activity.
Reason: Direct in-vitro enzyme assays of purified human GCK; core molecular function.
Supporting Evidence:
PMID:16173921
Enzymatic assays on the recombinant proteins revealed that mutations Thr206-->Met and Leu165-->Phe strongly affect the kinetic parameters of glucokinase
|
|
GO:0005515
protein binding
|
IPI
PMID:16173921 Effects of novel maturity-onset diabetes of the young (MODY)... |
MARK AS OVER ANNOTATED |
Summary: IPI annotation. This paper tested the interaction of GCK MODY2 mutants with the glucokinase regulatory protein (GKRP/GCKR) in a yeast two-hybrid system. The generic protein binding term is uninformative as a molecular function.
Reason: Bare protein binding (GO:0005515) is uninformative per curation guidelines. The specific GCK-GCKR interaction is a well-established, biologically important relationship captured in the description/notes; the IPI is retained but flagged.
Supporting Evidence:
PMID:16173921
none of the mutations tested appears to affect the interaction of gluco-kinase with the glucokinase regulatory protein in the yeast two-hybrid system
|
|
GO:0005524
ATP binding
|
IDA
PMID:16173921 Effects of novel maturity-onset diabetes of the young (MODY)... |
ACCEPT |
Summary: IDA of ATP binding, inferred from enzymatic assays of the purified recombinant GCK using ATP as the phosphoryl-donor co-substrate. ATP binding is also documented structurally.
Reason: GCK binds ATP as its co-substrate; supported by kinetic assays and structural studies.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
KM=4.5 mM for ATP (at pH 7)
|
|
GO:0005536
D-glucose binding
|
IDA
PMID:16173921 Effects of novel maturity-onset diabetes of the young (MODY)... |
ACCEPT |
Summary: IDA of D-glucose binding from kinetic assays of purified recombinant GCK measuring glucose-dependent activity; glucose binding is the substrate-recognition function of glucokinase.
Reason: Glucose binding is a core molecular activity of GCK, directly supported by enzyme kinetics and glucose-bound structures.
Supporting Evidence:
PMID:16173921
mutations Thr206-->Met and Leu165-->Phe strongly affect the kinetic parameters of glucokinase, in agreement with the localization of both residues close to the active site
|
|
GO:0032024
positive regulation of insulin secretion
|
IMP
PMID:8878425 Impaired hepatic glycogen synthesis in glucokinase-deficient... |
ACCEPT |
Summary: IMP annotation from a study of glucokinase-deficient (MODY2) subjects. Impaired GCK reduces insulin secretion, indicating GCK positively regulates glucose-stimulated insulin secretion.
Reason: Loss of GCK function impairs insulin secretion in human subjects; GCK positively regulates insulin secretion.
Supporting Evidence:
PMID:8878425
impaired insulin secretion has been observed in glucokinase-deficient subjects
|
|
GO:0045721
negative regulation of gluconeogenesis
|
IMP
PMID:8878425 Impaired hepatic glycogen synthesis in glucokinase-deficient... |
ACCEPT |
Summary: IMP annotation. In glucokinase-deficient (MODY2) subjects, hepatic gluconeogenesis after meals was relatively augmented, implying that normal hepatic GCK activity suppresses gluconeogenic flux.
Reason: MODY2 subjects show augmented hepatic gluconeogenesis, so functional GCK normally restrains gluconeogenesis; a documented hepatic role.
Supporting Evidence:
PMID:8878425
glucokinase-deficient subjects have decreased net accumulation of hepatic glycogen and relatively augmented hepatic gluconeogenesis after meals
|
|
GO:0045725
positive regulation of glycogen biosynthetic process
|
IMP
PMID:8878425 Impaired hepatic glycogen synthesis in glucokinase-deficient... |
ACCEPT |
Summary: IMP annotation. Glucokinase-deficient (MODY2) subjects have decreased net hepatic glycogen accumulation after meals, showing that hepatic GCK is required to provide G6P for and to promote glycogen synthesis.
Reason: Loss of GCK reduces hepatic glycogen synthesis; GCK positively regulates glycogen biosynthesis by providing glucose 6-phosphate.
Supporting Evidence:
PMID:8878425
the net increment in hepatic glycogen content after each meal was 30-60% lower in glucokinase-deficient than in the control subjects
|
|
GO:0004340
glucokinase activity
|
IDA
PMID:12941786 Insights into the biochemical and genetic basis of glucokina... |
ACCEPT |
Summary: IDA of glucokinase activity from functional analysis of purified recombinant GST-GCK fusion proteins (wild-type and activating T65I/W99R mutants), measuring the phosphorylating potential (activity index).
Reason: Direct in-vitro enzyme assays of purified human GCK; core molecular function.
Supporting Evidence:
PMID:12941786
Functional analysis of the purified recombinant glutathionyl S-transferase fusion proteins of T65I and W99R GCK revealed that the kinetic changes result in a relative increased activity index
|
|
GO:0004340
glucokinase activity
|
IDA
PMID:8446612 Glucokinase mutations associated with non-insulin-dependent ... |
ACCEPT |
Summary: IDA of glucokinase activity from expression of native and mutant human beta-cell glucokinase in E. coli and measurement of enzyme activity (Vmax, Km for glucose).
Reason: Direct in-vitro enzyme assays of the human enzyme; core molecular function.
Supporting Evidence:
PMID:8446612
we have expressed native and mutant forms of this protein in Escherichia coli. All of the missense mutations show changes in enzyme activity
|
|
GO:0005524
ATP binding
|
IDA
PMID:12941786 Insights into the biochemical and genetic basis of glucokina... |
ACCEPT |
Summary: IDA of ATP binding, from functional assays of purified recombinant GCK that require ATP as the phosphoryl-donor co-substrate; ATP binding is also documented structurally.
Reason: GCK binds ATP as its co-substrate; supported by enzyme kinetics and structure.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
KM=4.5 mM for ATP (at pH 7)
|
|
GO:0005524
ATP binding
|
IDA
PMID:8446612 Glucokinase mutations associated with non-insulin-dependent ... |
ACCEPT |
Summary: IDA of ATP binding from enzyme-activity assays of purified human GCK that use ATP as substrate; consistent with structural evidence for ATP binding.
Reason: GCK binds ATP as its phosphoryl-donor substrate; well supported.
Supporting Evidence:
file:human/GCK/GCK-uniprot.txt
KM=4.5 mM for ATP (at pH 7)
|
|
GO:0005536
D-glucose binding
|
IDA
PMID:12941786 Insights into the biochemical and genetic basis of glucokina... |
ACCEPT |
Summary: IDA of D-glucose binding from kinetic characterization of purified GCK (activating mutations accelerate glucose binding to the apoenzyme); glucose binding is the substrate-recognition function of GCK.
Reason: Glucose binding is a core molecular activity of GCK; directly characterized kinetically.
Supporting Evidence:
PMID:12941786
These mutations are within the recently identified heterotropic allosteric activator site
|
|
GO:0005536
D-glucose binding
|
IDA
PMID:8446612 Glucokinase mutations associated with non-insulin-dependent ... |
ACCEPT |
Summary: IDA of D-glucose binding from enzyme assays of purified human GCK measuring Km for glucose across wild-type and mutant enzymes.
Reason: Glucose binding is a core molecular activity of GCK; directly measured as Km for glucose.
Supporting Evidence:
PMID:8446612
increase in Km for glucose
|
|
GO:0032024
positive regulation of insulin secretion
|
IMP
PMID:8132752 Insulin secretory abnormalities in subjects with hyperglycem... |
ACCEPT |
Summary: IMP annotation from beta-cell function studies of human GCK-mutation carriers, showing a right-shifted glucose/insulin-secretion dose-response curve, demonstrating GCK's positive control of glucose-stimulated insulin secretion.
Reason: GCK mutation carriers show reduced/shifted insulin secretion, establishing GCK's positive regulation of glucose-stimulated insulin secretion.
Supporting Evidence:
PMID:8132752
the dose-response curve relating glucose and ISR obtained during graded intravenous glucose infusions was shifted to the right in the subjects with GCK mutations
|
|
GO:0042593
glucose homeostasis
|
IMP
PMID:8132752 Insulin secretory abnormalities in subjects with hyperglycem... |
ACCEPT |
Summary: IMP annotation from studies of GCK-mutation carriers demonstrating that GCK sets the in-vivo glucose/insulin-secretion relationship, a central mechanism of glucose homeostasis.
Reason: GCK is a key determinant of the in-vivo glucose/insulin dose-response, i.e. of glucose homeostasis; supported by human mutation studies.
Supporting Evidence:
PMID:8132752
support a key role for the enzyme GCK in determining the in vivo glucose/ISR dose-response relationships
|
GCK encodes glucokinase (hexokinase-4 / hexokinase type IV / hexokinase-D), the
high-Km hexose-phosphorylating enzyme (EC 2.7.1.1) expressed mainly in pancreatic
beta cells and hepatocytes. It catalyzes the first, committed step of glucose
utilization: phosphorylation of D-glucose to D-glucose 6-phosphate using ATP
(RHEA:17825). It also phosphorylates D-mannose and D-fructose (and, weakly,
2-deoxyglucose, glucosamine), but these are of minor physiological relevance
[UniProt P35557 CATALYTIC ACTIVITY; PMID:7742312].
The defining property that distinguishes GCK from HK1-3 is its weak affinity for
glucose (KM ~6 mM, sigmoidal/cooperative kinetics, Hill coefficient ~1.7) and lack
of product inhibition by G6P. This makes it a physiological glucose sensor: its
activity varies steeply across the physiological blood-glucose range, so it sets the
threshold for glucose-stimulated insulin secretion in the beta cell and controls
hepatic glucose uptake/glycogen synthesis in the liver
[PMID:7742312 "KM=6.03 mM for glucose"; UniProt "GCK acts as a glucose sensor in the pancreatic beta cell"].
id: P35557
gene_symbol: GCK
product_type: PROTEIN
status: INITIALIZED
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: >-
Glucokinase (hexokinase-4/HK4, hexokinase type IV) is an ATP-dependent
hexose-phosphorylating enzyme (EC 2.7.1.1) expressed mainly in pancreatic beta cells
and hepatocytes, where it catalyzes the first committed step of glucose utilization,
the phosphorylation of D-glucose to D-glucose 6-phosphate. Unlike the other human
hexokinases (HK1-3), glucokinase has a weak affinity for glucose (KM ~6 mM), exhibits
sigmoidal/cooperative kinetics, and is not inhibited by its product glucose 6-phosphate.
These properties make it the physiological glucose sensor whose activity varies steeply
across the normal blood-glucose range; in the pancreatic beta cell it sets the threshold
for glucose-stimulated insulin secretion, and in the liver it drives glucose uptake
and glycogen synthesis. Hepatic glucokinase is allosterically regulated by the glucokinase
regulatory protein (GCKR), which at low glucose binds glucokinase and sequesters the
inactive complex in the nucleus, releasing it to the cytosol when glucose rises. Glucokinase
can also phosphorylate D-mannose and D-fructose in vitro, but these activities are of
minor physiological relevance. Mutations in GCK cause a spectrum of glycemic disorders;
heterozygous inactivating mutations cause GCK-MODY (maturity-onset diabetes of the young
type 2, mild fasting hyperglycemia), homozygous or biallelic loss causes permanent neonatal
diabetes, and heterozygous activating (gain-of-function) mutations cause familial
hyperinsulinemic hypoglycemia.
alternative_products:
- name: '1'
id: P35557-1
- name: '2'
id: P35557-2
sequence_note: VSP_002074
- name: '3'
id: P35557-3
sequence_note: VSP_002075
existing_annotations:
- term:
id: GO:0004340
label: glucokinase activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: Phylogenetic (IBA) assertion of the core catalytic function, ATP-dependent
phosphorylation of D-glucose to D-glucose 6-phosphate. This is GCK's defining
molecular function and is independently confirmed by multiple human EXP/IDA/IMP
annotations.
action: ACCEPT
reason: Glucokinase activity is the well-established core molecular function of
GCK, supported by direct biochemical characterization of the purified enzyme
and by the entire GCK-MODY/hyperinsulinism disease literature.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: Mediates the initial step of glycolysis by catalyzing
- term:
id: GO:0008865
label: fructokinase activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: Phylogenetic assertion of fructokinase activity, propagated across the
hexokinase family. GCK does phosphorylate D-fructose in vitro, but with very
weak affinity (KM ~240 mM) that is far outside any physiological range, so this
is a promiscuous side-activity rather than a physiological function.
action: KEEP_AS_NON_CORE
reason: A genuine in-vitro substrate promiscuity of the hexokinase family, but
the extremely high KM for fructose means it is not a physiologically relevant
function of GCK; keep as non-core.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: KM=240 mM for fructose (at 30 degrees Celsius and pH 7.5)
- term:
id: GO:0019158
label: mannokinase activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: Phylogenetic assertion of mannokinase activity. GCK phosphorylates D-mannose
in vitro with an affinity comparable to glucose (KM ~4.35 mM), but mannose is
a quantitatively minor substrate physiologically.
action: KEEP_AS_NON_CORE
reason: A genuine in-vitro activity of the hexokinase family; kept as non-core
because glucose phosphorylation is the physiologically dominant function.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: KM=4.35 mM for mannose (at 30 degrees Celsius and pH 7.5)
- term:
id: GO:0032473
label: cytoplasmic side of mitochondrial outer membrane
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: Phylogenetic assertion of localization to the cytoplasmic side of the
mitochondrial outer membrane, inherited from the hexokinase family. HK1-3 bind
the outer mitochondrial membrane through an N-terminal hydrophobic anchor, but
GCK lacks this anchor and is a soluble cytosolic (and regulated nuclear) protein.
action: MARK_AS_OVER_ANNOTATED
reason: Family-level over-propagation. Mitochondrial outer-membrane association
is a property of HK1-3 (which have an N-terminal membrane-binding domain absent
from GCK); GCK is documented as cytoplasmic and nuclear, not membrane-anchored.
propagation_review:
root_cause: PROPAGATION_BAD
failure_modes:
- COMPARTMENT_OR_COMPLEX_MISMATCH
source_entities:
- source_id: UniProtKB:P52789
comment: Rat hexokinase-1 type; binds outer mitochondrial membrane via an
N-terminal hydrophobic anchor that single-domain GCK lacks, so the compartment
does not transfer correctly.
- source_id: UniProtKB:M4FD55
comment: Hexokinase-family source for the mitochondrial-membrane IBA; anchor-bearing,
unlike cytosolic/nuclear GCK.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Cytoplasm'
- term:
id: GO:0006096
label: glycolytic process
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: Phylogenetic assertion that GCK participates in glycolysis. GCK catalyzes
the first, committed step of the glycolytic pathway (glucose to glucose 6-phosphate),
which is well established.
action: ACCEPT
reason: Glucokinase catalyzes step 1 of glycolysis; this is a core biological
process for the gene.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: Mediates the initial step of glycolysis by catalyzing
- term:
id: GO:0005829
label: cytosol
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: Phylogenetic assertion of cytosolic localization, consistent with human
HPA immunofluorescence (IDA) and the well-documented cytosolic location of active
glucokinase.
action: ACCEPT
reason: Glucokinase is a cytosolic enzyme (with regulated nuclear sequestration
in hepatocytes); cytosol is its principal site of catalytic action.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Cytoplasm'
- term:
id: GO:0006006
label: glucose metabolic process
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: Phylogenetic assertion that GCK participates in glucose metabolism. As
the enzyme catalyzing the rate-limiting first step of glucose utilization in
liver and beta cells, this is a core biological process.
action: ACCEPT
reason: Glucokinase is a rate-limiting determinant of glucose metabolism in liver
and pancreatic beta cells.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: rate-limiting step in glucose metabolism in these tissues
- term:
id: GO:0051156
label: glucose 6-phosphate metabolic process
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: Phylogenetic assertion linking GCK to glucose 6-phosphate metabolism.
GCK produces glucose 6-phosphate, so it directly contributes to G6P metabolism;
this is corroborated by human IMP annotations.
action: ACCEPT
reason: The product of the GCK reaction is glucose 6-phosphate; participation
in G6P metabolic process is a direct and accurate consequence of its activity.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: phosphorylation of D-glucose to D-glucose 6-phosphate
- term:
id: GO:0001678
label: intracellular glucose homeostasis
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: Phylogenetic assertion that GCK contributes to intracellular glucose
homeostasis, consistent with its role as the glucose sensor controlling hepatic
glucose uptake and beta-cell insulin secretion.
action: ACCEPT
reason: As the tissue glucose sensor, GCK is a central determinant of cellular
and whole-body glucose homeostasis.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: GCK acts as a glucose sensor in the pancreatic beta
- term:
id: GO:0050796
label: regulation of insulin secretion
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: Phylogenetic assertion that GCK regulates insulin secretion. In the beta
cell, glucokinase sets the threshold for glucose-stimulated insulin secretion,
confirmed by human IMP studies of GCK mutation carriers.
action: ACCEPT
reason: Beta-cell glucokinase controls the glucose threshold for insulin secretion;
supported by both phylogenetic inference and human physiology studies.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: modulating insulin secretion
- term:
id: GO:0001678
label: intracellular glucose homeostasis
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: involved_in
review:
summary: InterPro2GO electronic mapping of the hexokinase domain to intracellular
glucose homeostasis. Redundant with the curated IBA annotation to the same term
and consistent with GCK's role as the glucose sensor.
action: ACCEPT
reason: Accurate for GCK; duplicate of the curated intracellular glucose homeostasis
annotation.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: GCK acts as a glucose sensor in the pancreatic beta
- term:
id: GO:0004396
label: hexokinase activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: enables
review:
summary: Electronic assignment of the parent hexokinase activity (EC 2.7.1.1)
term. GCK is hexokinase-4, so hexokinase activity is correct, though glucokinase
activity (GO:0004340) is the more specific and preferred term.
action: ACCEPT
reason: Correct broader molecular-function term; GCK is a bona fide hexokinase
(EC 2.7.1.1). Retained as an accurate parent of the specific glucokinase activity.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: Catalyzes the phosphorylation of hexose, such as D-glucose,
- term:
id: GO:0005524
label: ATP binding
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: enables
review:
summary: InterPro-based electronic assignment of ATP binding. ATP is the phosphate
donor co-substrate of glucokinase and ATP binding is directly demonstrated by
human IDA annotations and crystal structures with bound ATP analog.
action: ACCEPT
reason: GCK binds ATP as its phosphoryl-donor substrate; well supported by structure
and IDA.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: KM=4.5 mM for ATP (at pH 7)
- term:
id: GO:0005536
label: D-glucose binding
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: enables
review:
summary: InterPro-based electronic assignment of D-glucose binding, the substrate-binding
function of glucokinase, corroborated by human IDA annotations and glucose-bound
crystal structures.
action: ACCEPT
reason: Glucose binding is a core molecular activity of GCK, directly demonstrated
experimentally.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: COMPLEX WITH GLUCOSE
- term:
id: GO:0005634
label: nucleus
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: located_in
review:
summary: Electronic assignment of nuclear localization. In hepatocytes, glucokinase
is sequestered in the nucleus in complex with GCKR at low glucose, so this location
is real but conditional/regulated. Corroborated by human EXP annotations.
action: ACCEPT
reason: Regulated nuclear sequestration of hepatic GCK by GCKR is well documented;
the nuclear location is genuine although condition-dependent.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: the inactive complex is recruited to the
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: located_in
review:
summary: Electronic assignment of cytoplasmic localization, the principal compartment
of active glucokinase. Corroborated by human EXP annotations and HPA immunofluorescence.
action: ACCEPT
reason: Cytoplasm/cytosol is the main site of active GCK; well supported.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Cytoplasm'
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: located_in
review:
summary: Electronic assignment of mitochondrial localization. This is inherited
from the hexokinase family / by-similarity from HK1-type orthologs; mitochondrial
outer-membrane binding is a property of HK1-3 that have an N-terminal membrane
anchor absent from GCK, which is cytosolic and nuclear.
action: MARK_AS_OVER_ANNOTATED
reason: GCK lacks the N-terminal mitochondrial-binding anchor of HK1-3; the mitochondrial
annotation is a family/by-similarity over-propagation rather than a GCK-specific
location.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Cytoplasm'
- term:
id: GO:0005975
label: carbohydrate metabolic process
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: involved_in
review:
summary: InterPro-based electronic assignment of the broad carbohydrate metabolic
process term. Accurate but general; more specific glucose metabolic/glycolytic
terms are annotated.
action: ACCEPT
reason: Correct high-level process term; a valid parent of the more specific glucose
metabolism annotations.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: Carbohydrate metabolism; hexose metabolism
- term:
id: GO:0006006
label: glucose metabolic process
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: ARBA machine-learning electronic assignment of glucose metabolic process,
redundant with the curated IBA annotation and accurate for GCK.
action: ACCEPT
reason: Correct; duplicate of the curated glucose metabolic process annotation.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: rate-limiting step in glucose metabolism in these tissues
- term:
id: GO:0006096
label: glycolytic process
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: involved_in
review:
summary: Electronic assignment of glycolytic process via UniPathway mapping, redundant
with the curated IBA annotation. GCK catalyzes the first step of glycolysis.
action: ACCEPT
reason: Correct; duplicate of the curated glycolytic process annotation.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: Mediates the initial step of glycolysis by catalyzing
- term:
id: GO:0006163
label: purine nucleotide metabolic process
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: ARBA electronic assignment of purine nucleotide metabolic process. This
almost certainly derives from GCK using ATP (a purine nucleotide) as co-substrate;
consuming ATP as a phosphate donor does not make GCK a participant in purine
nucleotide metabolism.
action: MARK_AS_OVER_ANNOTATED
reason: Over-interpretation of ATP co-substrate usage. GCK does not metabolize
purine nucleotides; ATP is a universal phosphoryl donor and this term misrepresents
the gene's biological role.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: a D-hexose + ATP = a D-hexose 6-phosphate + ADP
- term:
id: GO:0008865
label: fructokinase activity
evidence_type: IEA
original_reference_id: GO_REF:0000116
qualifier: enables
review:
summary: RHEA-based electronic assignment of fructokinase activity (D-fructose
+ ATP reaction). Same weak in-vitro promiscuous activity as the IBA/EXP fructokinase
annotations (KM ~240 mM), not physiologically relevant.
action: KEEP_AS_NON_CORE
reason: Genuine in-vitro side-activity but physiologically negligible due to the
very high KM for fructose.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: Reaction=D-fructose + ATP = D-fructose 6-phosphate + ADP
- term:
id: GO:0019158
label: mannokinase activity
evidence_type: IEA
original_reference_id: GO_REF:0000116
qualifier: enables
review:
summary: RHEA-based electronic assignment of mannokinase activity (D-mannose +
ATP reaction). GCK phosphorylates mannose in vitro, but this is a minor physiological
substrate.
action: KEEP_AS_NON_CORE
reason: Genuine in-vitro activity but not the physiologically dominant function
of GCK.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: Reaction=D-mannose + ATP = D-mannose 6-phosphate + ADP
- term:
id: GO:0032024
label: positive regulation of insulin secretion
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: ARBA electronic assignment of positive regulation of insulin secretion,
redundant with the human IMP annotations. Glucokinase drives glucose-stimulated
insulin secretion in the beta cell.
action: ACCEPT
reason: Correct; duplicate of curated IMP annotations for positive regulation
of insulin secretion.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: modulating insulin secretion
- term:
id: GO:0042593
label: glucose homeostasis
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: ARBA electronic assignment of glucose homeostasis, redundant with the
human IMP annotations. GCK is a central determinant of whole-body glucose homeostasis.
action: ACCEPT
reason: Correct; duplicate of curated glucose homeostasis annotations.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: insulin-sensitive determinant of hepatic glucose usage
- term:
id: GO:0046496
label: nicotinamide nucleotide metabolic process
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: ARBA electronic assignment of nicotinamide nucleotide (NAD/NADP) metabolic
process. GCK has no role in NAD/NADP metabolism; its reaction consumes ATP and
produces glucose 6-phosphate, and this term appears to be a spurious machine-learning
mapping.
action: REMOVE
reason: Demonstrably wrong electronic inference. Glucokinase does not participate
in nicotinamide nucleotide (NAD/NADP) metabolism; there is no biochemical basis
for this ARBA mapping, which should be removed.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: a D-hexose + ATP = a D-hexose 6-phosphate + ADP
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:11522786
qualifier: enables
review:
summary: IntAct binary-interaction annotation. PMID:11522786 identified PFKFB1
(6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase) as a glucokinase interaction
partner via phage-display and yeast two-hybrid. The interaction is real and
biologically interesting, but the generic protein binding term is uninformative
as a molecular function.
action: MARK_AS_OVER_ANNOTATED
reason: Per curation guidelines, bare protein binding (GO:0005515) is not an informative
molecular function. The underlying PFKFB1 (and GCKR) interaction is captured
in the gene description/notes; the IPI itself is retained but flagged as over-annotated.
supported_by:
- reference_id: PMID:11522786
supporting_text: The second consensus motif, SLKVWT, showed a complete homology
to the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:32296183
qualifier: enables
review:
summary: IntAct binary-interaction annotation from the HuRI human interactome
map (PMID:32296183), a high-throughput yeast two-hybrid screen. The generic
protein binding term does not convey a specific molecular function.
action: MARK_AS_OVER_ANNOTATED
reason: Bare protein binding (GO:0005515) is uninformative per curation guidelines;
derived from a proteome-scale binary interactome screen. Retained but flagged
as over-annotated.
supported_by:
- reference_id: PMID:32296183
supporting_text: a human 'all-by-all' reference interactome map of human binary
protein interactions, or 'HuRI'
- term:
id: GO:0004340
label: glucokinase activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: enables
review:
summary: Electronic (RHEA/UniProt combined) assignment of glucokinase activity,
the specific EC 2.7.1.1 D-glucose + ATP reaction. Redundant with the many curated
EXP/IDA/IMP/IBA glucokinase activity annotations.
action: ACCEPT
reason: Correct and specific core molecular function; duplicate of curated glucokinase
activity annotations.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: Reaction=D-glucose + ATP = D-glucose 6-phosphate + ADP
- term:
id: GO:0005829
label: cytosol
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: located_in
review:
summary: Ensembl-projected electronic assignment of cytosolic localization from
the mouse ortholog. Consistent with the human IDA (HPA) and IBA cytosol annotations.
action: ACCEPT
reason: Cytosol is the principal location of active glucokinase; well supported
across multiple evidence lines.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Cytoplasm'
- term:
id: GO:0070509
label: calcium ion import
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: Ensembl-projected electronic annotation of calcium ion import from the
mouse ortholog. Glucokinase is a cytosolic kinase with no transport activity;
any link to calcium import would be an indirect downstream consequence of glucose-stimulated
insulin secretion physiology, not a function of GCK itself.
action: MARK_AS_OVER_ANNOTATED
reason: Over-propagated electronic inference. GCK does not import calcium; this
is at best an indirect, distal physiological association projected from the ortholog
and does not represent a molecular activity or direct process role of GCK.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: Catalyzes the phosphorylation of hexose, such as D-glucose,
- term:
id: GO:0061621
label: canonical glycolysis
evidence_type: TAS
original_reference_id: Reactome:R-HSA-70171
qualifier: involved_in
review:
summary: Reactome traceable-author-statement annotation placing GCK in canonical
glycolysis (the Glycolysis pathway). GCK catalyzes the committed first step
of glucose catabolism via glycolysis.
action: ACCEPT
reason: GCK performs the first step of glycolysis; canonical glycolysis is an
accurate, curator-asserted process.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: Mediates the initial step of glycolysis by catalyzing
- term:
id: GO:0019318
label: hexose metabolic process
evidence_type: IEA
original_reference_id: GO_REF:0000041
qualifier: involved_in
review:
summary: UniPathway-based electronic assignment of hexose metabolic process. GCK
phosphorylates hexoses (glucose, mannose, fructose) as the entry step of hexose
utilization; accurate but general.
action: ACCEPT
reason: Correct high-level process; a valid parent of the more specific glucose
metabolic process annotations.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: Carbohydrate metabolism; hexose metabolism
- term:
id: GO:0004340
label: glucokinase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5621918
qualifier: enables
review:
summary: Reactome TAS annotation of glucokinase activity, from the reaction describing
defective GCK failing to phosphorylate glucose to G6P. Correct core molecular
function.
action: ACCEPT
reason: Curator-traceable assertion of the core glucokinase activity; consistent
with all other evidence.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: Reaction=D-glucose + ATP = D-glucose 6-phosphate + ADP
- term:
id: GO:0004340
label: glucokinase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-70420
qualifier: enables
review:
summary: Reactome TAS annotation of glucokinase activity, from the reaction in
which HK1,2,3,GCK,HKDC1 phosphorylate glucose to form G6P. Correct core molecular
function.
action: ACCEPT
reason: Curator-traceable assertion of the core glucokinase activity.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: Reaction=D-glucose + ATP = D-glucose 6-phosphate + ADP
- term:
id: GO:0005829
label: cytosol
evidence_type: IDA
original_reference_id: GO_REF:0000052
qualifier: located_in
review:
summary: Human Protein Atlas immunofluorescence (IDA) localizing GCK to the cytosol.
This is a direct human experimental localization consistent with the enzyme's
soluble cytosolic nature.
action: ACCEPT
reason: Direct immunofluorescence evidence for cytosolic localization; the principal
compartment of active glucokinase.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Cytoplasm'
- term:
id: GO:0004340
label: glucokinase activity
evidence_type: EXP
original_reference_id: PMID:7742312
qualifier: enables
review:
summary: Steady-state kinetic characterization of purified human beta-cell glucokinase
phosphorylating glucose (and other sugars), establishing its glucokinase activity
and the diagnostic weak glucose affinity (KM ~6 mM) with cooperative kinetics.
action: ACCEPT
reason: Direct experimental demonstration of glucokinase activity on the human
enzyme; a primary source for the core molecular function.
supported_by:
- reference_id: PMID:7742312
supporting_text: glucokinase phosphorylated the sugars in the order glucose
= mannose > deoxyglucose > fructose = glucosamine
- term:
id: GO:0004396
label: hexokinase activity
evidence_type: EXP
original_reference_id: PMID:11916951
qualifier: enables
review:
summary: Functional characterization of an activating GCK mutant (A456V) using
the purified recombinant enzyme, measuring glucose phosphorylation kinetics
(glucose S0.5, kcat). Confirms hexokinase/glucokinase activity of human GCK.
action: ACCEPT
reason: Experimental measurement of GCK glucose-phosphorylating (hexokinase) activity
on the purified human enzyme.
supported_by:
- reference_id: PMID:11916951
supporting_text: The purified recombinant glutathionyl S-transferase fusion
protein of the A456V glucokinase revealed a decreased glucose S(0.5)
- term:
id: GO:0004396
label: hexokinase activity
evidence_type: EXP
original_reference_id: PMID:15277402
qualifier: enables
review:
summary: Functional study of the activating GCK-Y214C mutant, measuring glucose
affinity, cooperativity and kcat of the purified enzyme, confirming GCK's glucose-phosphorylating
(hexokinase) activity.
action: ACCEPT
reason: Experimental measurement of GCK enzymatic activity on the purified human
enzyme; supports the hexokinase/glucokinase molecular function.
supported_by:
- reference_id: PMID:15277402
supporting_text: Functional studies of purified recombinant glutathionyl S-transferase
fusion protein of GK-Y214C showed a sixfold increase in its affinity for glucose
- term:
id: GO:0004396
label: hexokinase activity
evidence_type: EXP
original_reference_id: PMID:17082186
qualifier: enables
review:
summary: Transient-kinetics analysis of glucose binding and turnover for wild-type
and activating GCK mutants, characterizing the enzyme's glucose-phosphorylating
activity and its GKRP regulation.
action: ACCEPT
reason: Direct kinetic characterization of GCK hexokinase activity on purified
enzyme.
supported_by:
- reference_id: PMID:17082186
supporting_text: the transient kinetics of glucose binding for activating mutations
follows a general two-step mechanism
- term:
id: GO:0004396
label: hexokinase activity
evidence_type: EXP
original_reference_id: PMID:18322640
qualifier: enables
review:
summary: Biochemical characterization of six MODY2 GCK mutants showing reduced
enzymatic activity, based on assays of the recombinant enzyme; confirms GCK's
glucose-phosphorylating (hexokinase) activity.
action: ACCEPT
reason: Experimental enzyme-activity assays of human GCK; supports the hexokinase/glucokinase
molecular function.
supported_by:
- reference_id: PMID:18322640
supporting_text: All these mutations produced enzymes that presented reduced
enzymatic activity in various degrees
- term:
id: GO:0004396
label: hexokinase activity
evidence_type: EXP
original_reference_id: PMID:19146401
qualifier: enables
review:
summary: Identification and kinetic characterization of 11 activating GCK mutations,
reporting kcat/K0.5 for glucose on the recombinant enzyme; confirms GCK's glucose-phosphorylating
(hexokinase) activity.
action: ACCEPT
reason: Experimental measurement of GCK glucose-phosphorylating activity on the
human enzyme.
supported_by:
- reference_id: PMID:19146401
supporting_text: I211F is the most active variant identified to date, with a
k(cat)/K(0.5,glucose) value
- term:
id: GO:0004396
label: hexokinase activity
evidence_type: EXP
original_reference_id: PMID:25015100
qualifier: enables
review:
summary: Kinetic and thermostability analysis of 16 homozygous GCK missense mutants
(relative activity index), assaying the recombinant human enzyme's glucose-phosphorylating
activity.
action: ACCEPT
reason: Experimental enzyme-activity measurement on purified human GCK; supports
the hexokinase/glucokinase molecular function.
supported_by:
- reference_id: PMID:25015100
supporting_text: Recombinant mutant GCK proteins were analyzed for kinetic and
thermostability characteristics and assigned a relative activity index
- term:
id: GO:0004396
label: hexokinase activity
evidence_type: EXP
original_reference_id: PMID:8325892
qualifier: enables
review:
summary: Structure/function study expressing native and mutant human beta-cell
glucokinase and measuring Vmax and Km for glucose, directly characterizing GCK's
glucose-phosphorylating (hexokinase) activity.
action: ACCEPT
reason: Direct experimental characterization of GCK enzymatic activity on the
human enzyme.
supported_by:
- reference_id: PMID:8325892
supporting_text: a Vmax that was 20-100% of normal but a Km for glucose that
was 8-14-fold greater than the native enzyme
- term:
id: GO:0005634
label: nucleus
evidence_type: EXP
original_reference_id: PMID:10456334
qualifier: located_in
review:
summary: Experimental demonstration that liver glucokinase concentrates in the
nucleus of hepatocytes at low glucose, in a GCKR-dependent manner. Establishes
the regulated nuclear localization of hepatic GCK.
action: ACCEPT
reason: Direct experimental evidence for regulated nuclear localization of GCK
via GCKR binding; genuine although condition-dependent.
supported_by:
- reference_id: PMID:10456334
supporting_text: concentrated in the nucleus of cultured rat hepatocytes at
low glucose and translocated to the cytoplasm at high glucose
- term:
id: GO:0005634
label: nucleus
evidence_type: EXP
original_reference_id: PMID:24187134
qualifier: located_in
review:
summary: Fluorescence-microscopy study of GCK and its interaction partner midnolin
in pancreatic beta cells, consistent with a nuclear/cytoplasmic distribution
of glucokinase.
action: ACCEPT
reason: Supports nuclear (and cytoplasmic) localization of GCK; consistent with
its regulated subcellular distribution.
supported_by:
- reference_id: PMID:24187134
supporting_text: revealed localization of midnolin in nucleus and cytoplasm
and co-localization with glucokinase in pancreatic beta cells
- term:
id: GO:0005737
label: cytoplasm
evidence_type: EXP
original_reference_id: PMID:10456334
qualifier: located_in
review:
summary: Experimental demonstration that liver glucokinase translocates to the
cytoplasm at high glucose, establishing cytoplasm as the compartment of active
hepatic GCK.
action: ACCEPT
reason: Direct experimental evidence for cytoplasmic localization of active GCK.
supported_by:
- reference_id: PMID:10456334
supporting_text: concentrated in the nucleus of cultured rat hepatocytes at
low glucose and translocated to the cytoplasm at high glucose
- term:
id: GO:0005737
label: cytoplasm
evidence_type: EXP
original_reference_id: PMID:24187134
qualifier: located_in
review:
summary: Fluorescence-microscopy evidence for cytoplasmic (and nuclear) localization
of glucokinase in pancreatic beta cells.
action: ACCEPT
reason: Supports cytoplasmic localization of GCK; consistent with the enzyme's
soluble cytosolic nature.
supported_by:
- reference_id: PMID:24187134
supporting_text: revealed localization of midnolin in nucleus and cytoplasm
and co-localization with glucokinase in pancreatic beta cells
- term:
id: GO:0005739
label: mitochondrion
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: located_in
review:
summary: ISS transfer of mitochondrial localization from an ortholog (UniProtKB:P17712,
rat hexokinase). Mitochondrial outer-membrane binding is a documented property
of HK1-3 (which have an N-terminal membrane anchor) but not of GCK, which lacks
this anchor and is cytosolic/nuclear.
action: MARK_AS_OVER_ANNOTATED
reason: The ISS source is a membrane-anchored hexokinase; GCK lacks the N-terminal
mitochondrial-binding domain, so mitochondrial localization is a family-level
over-transfer rather than a GCK-specific location.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Cytoplasm'
- term:
id: GO:0008865
label: fructokinase activity
evidence_type: EXP
original_reference_id: PMID:7742312
qualifier: enables
review:
summary: Kinetic measurements showing purified human beta-cell glucokinase phosphorylates
D-fructose in vitro, but with very weak affinity (KM ~240 mM), far above any
physiological fructose concentration.
action: KEEP_AS_NON_CORE
reason: A genuine, experimentally measured in-vitro activity, but physiologically
negligible given the extremely high KM for fructose; kept as non-core.
supported_by:
- reference_id: PMID:7742312
supporting_text: glucokinase phosphorylated the sugars in the order glucose
= mannose > deoxyglucose > fructose = glucosamine
- term:
id: GO:0019158
label: mannokinase activity
evidence_type: EXP
original_reference_id: PMID:7742312
qualifier: enables
review:
summary: Kinetic measurements showing purified human beta-cell glucokinase phosphorylates
D-mannose in vitro with an affinity comparable to glucose (KM ~4.35 mM), a genuine
but quantitatively minor physiological substrate.
action: KEEP_AS_NON_CORE
reason: An experimentally measured in-vitro activity of GCK; kept as non-core
because glucose is the physiologically dominant substrate.
supported_by:
- reference_id: PMID:7742312
supporting_text: glucokinase phosphorylated the sugars in the order glucose
= mannose > deoxyglucose > fructose = glucosamine
- term:
id: GO:0009749
label: response to glucose
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: ISS transfer of response to glucose from an ortholog. GCK function and
protein level are modulated by glucose (glucose promotes the active cytosolic
state and stabilizes the enzyme), so involvement in the cellular response to
glucose is biologically reasonable.
action: ACCEPT
reason: Consistent with GCK's role as a glucose sensor whose activity, localization
and stability respond to glucose; a reasonable orthology-based transfer.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: is effective only when glucose is abundant
- term:
id: GO:0141089
label: glucose sensor activity
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: enables
review:
summary: ISS transfer of the specific molecular-function term glucose sensor activity.
This precisely captures GCK's defining physiological role, its weak glucose
affinity and cooperative kinetics allow it to function as the cellular glucose
sensor setting the threshold for insulin secretion and hepatic glucose uptake.
action: ACCEPT
reason: Glucose sensor activity is the most specific and biologically apt molecular-function
term for GCK; strongly supported by its kinetic properties and physiology.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: GCK acts as a glucose sensor in the pancreatic beta
- term:
id: GO:0006007
label: glucose catabolic process
evidence_type: IMP
original_reference_id: PMID:12941786
qualifier: involved_in
review:
summary: IMP annotation from characterization of an activating hypoglycemia mutation
(T65I) showing GCK catalyzes the rate-limiting step of beta-cell glucose metabolism/catabolism.
GCK initiates glucose catabolism via glycolysis.
action: ACCEPT
reason: GCK performs the committed, rate-limiting first step of glucose catabolism;
supported by mutation phenotype analysis.
supported_by:
- reference_id: PMID:12941786
supporting_text: catalyzes the rate-limiting step for beta-cell glucose metabolism
- term:
id: GO:0004340
label: glucokinase activity
evidence_type: IMP
original_reference_id: PMID:19146401
qualifier: enables
review:
summary: IMP annotation of glucokinase activity based on activating GCK mutations
that alter the enzyme's glucose-phosphorylating kinetics (measured as kcat/K0.5,glucose).
action: ACCEPT
reason: Mutation-based evidence directly tying sequence changes to altered glucokinase
activity; core molecular function.
supported_by:
- reference_id: PMID:19146401
supporting_text: I211F is the most active variant identified to date, with a
k(cat)/K(0.5,glucose) value
- term:
id: GO:0051156
label: glucose 6-phosphate metabolic process
evidence_type: IMP
original_reference_id: PMID:19146401
qualifier: involved_in
review:
summary: IMP annotation linking GCK to glucose 6-phosphate metabolic process,
based on activating mutations altering the glucose-phosphorylating (G6P-producing)
activity of the enzyme.
action: ACCEPT
reason: GCK produces glucose 6-phosphate; mutation effects on its activity directly
support participation in G6P metabolism.
supported_by:
- reference_id: PMID:19146401
supporting_text: activating mutations in the human glk gene
- term:
id: GO:0004340
label: glucokinase activity
evidence_type: IMP
original_reference_id: PMID:18322640
qualifier: enables
review:
summary: IMP annotation of glucokinase activity from biochemical characterization
of MODY2 mutants that reduce the enzyme's activity to varying degrees.
action: ACCEPT
reason: Mutation-phenotype evidence directly linking GCK sequence to glucokinase
activity; core molecular function.
supported_by:
- reference_id: PMID:18322640
supporting_text: All these mutations produced enzymes that presented reduced
enzymatic activity in various degrees
- term:
id: GO:0051156
label: glucose 6-phosphate metabolic process
evidence_type: IMP
original_reference_id: PMID:18322640
qualifier: involved_in
review:
summary: IMP annotation linking GCK to glucose 6-phosphate metabolic process based
on MODY2 mutations reducing its G6P-producing enzymatic activity.
action: ACCEPT
reason: The GCK product is glucose 6-phosphate; mutation effects on activity support
participation in G6P metabolism.
supported_by:
- reference_id: PMID:18322640
supporting_text: mutations in the glucokinase (GCK) gene that result in impaired
glucokinase activity
- term:
id: GO:0004340
label: glucokinase activity
evidence_type: IDA
original_reference_id: PMID:22611063
qualifier: enables
review:
summary: IDA of glucokinase activity from spectrophotometric G6P-dehydrogenase-coupled
assays of GST-tagged wild-type and mutant human GCK proteins.
action: ACCEPT
reason: Direct in-vitro assay of GCK glucose-phosphorylating activity on the purified
human enzyme; core molecular function.
supported_by:
- reference_id: PMID:22611063
supporting_text: GCK activity was measured spectrophotometrically using glucose
6-phosphate dehydrogenase-coupled assays
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5621918
qualifier: located_in
review:
summary: Reactome TAS annotation of cytosolic localization, consistent with the
cytosolic location of active glucokinase.
action: ACCEPT
reason: Cytosol is the principal compartment of active GCK; curator-traceable
assertion consistent with all other evidence.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Cytoplasm'
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-170796
qualifier: located_in
review:
summary: Reactome TAS annotation of nucleoplasmic localization, from the reaction
transporting the GCK1:GCKR complex from cytosol to nucleoplasm. Reflects the
regulated nuclear sequestration of hepatic GCK bound to GCKR at low glucose.
action: ACCEPT
reason: Consistent with documented GCKR-dependent nuclear sequestration of hepatic
glucokinase; genuine although condition-dependent.
supported_by:
- reference_id: PMID:10456334
supporting_text: concentrated in the nucleus of cultured rat hepatocytes at
low glucose and translocated to the cytoplasm at high glucose
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-170810
qualifier: located_in
review:
summary: Reactome TAS annotation of nucleoplasmic localization, from the reaction
dissociating the nucleoplasmic GCK1:GCKR complex. Reflects regulated nuclear
sequestration of hepatic GCK.
action: ACCEPT
reason: Consistent with GCKR-dependent nuclear sequestration of hepatic glucokinase.
supported_by:
- reference_id: PMID:10456334
supporting_text: concentrated in the nucleus of cultured rat hepatocytes at
low glucose and translocated to the cytoplasm at high glucose
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-170825
qualifier: located_in
review:
summary: Reactome TAS annotation of nucleoplasmic localization, from the reaction
exporting GCK1 from the nucleus. Reflects the regulated nuclear/cytosolic shuttling
of hepatic GCK.
action: ACCEPT
reason: Consistent with the documented regulated nuclear localization/export of
hepatic glucokinase via GCKR.
supported_by:
- reference_id: PMID:10456334
supporting_text: concentrated in the nucleus of cultured rat hepatocytes at
low glucose and translocated to the cytoplasm at high glucose
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-170796
qualifier: located_in
review:
summary: Reactome TAS annotation of cytosolic localization, from the reaction
transporting GCK1:GCKR from cytosol to nucleoplasm; the cytosol is the origin
compartment for active glucokinase.
action: ACCEPT
reason: Cytosol is the principal compartment of active GCK; consistent with all
other localization evidence.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Cytoplasm'
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-170799
qualifier: located_in
review:
summary: Reactome TAS annotation of cytosolic localization, from the reaction
describing the cytosolic GCK1:GKRP complex equilibrium.
action: ACCEPT
reason: Cytosolic location of GCK; curator-traceable and consistent with other
evidence.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Cytoplasm'
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-170824
qualifier: located_in
review:
summary: Reactome TAS annotation of cytosolic localization, from the reaction
forming the GCK1:GKRP complex from cytosolic glucokinase and GKRP.
action: ACCEPT
reason: Cytosolic location of GCK; consistent with other localization evidence.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Cytoplasm'
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-170825
qualifier: located_in
review:
summary: Reactome TAS annotation of cytosolic localization, from the reaction
exporting GCK1 from the nucleus back to the cytosol.
action: ACCEPT
reason: Cytosolic location of active GCK; consistent with the regulated nuclear/cytosolic
shuttling of hepatic glucokinase.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Cytoplasm'
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5661474
qualifier: located_in
review:
summary: Reactome TAS annotation of cytosolic localization, from the (disease)
reaction of defective nuclear pore transport of GCK1:GKRP; cytosol is the origin
compartment.
action: ACCEPT
reason: Cytosolic location of GCK; consistent with other localization evidence.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Cytoplasm'
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-70420
qualifier: located_in
review:
summary: Reactome TAS annotation of cytosolic localization, from the reaction
in which HK1,2,3,GCK,HKDC1 phosphorylate glucose to G6P in the cytosol.
action: ACCEPT
reason: Cytosol is the site where GCK phosphorylates glucose; consistent with
all other evidence.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Cytoplasm'
- term:
id: GO:0006110
label: regulation of glycolytic process
evidence_type: NAS
original_reference_id: PMID:9570959
qualifier: involved_in
review:
summary: NAS annotation citing a paper on the GCKR gene structure, asserting that
glucokinase regulates insulin secretion in response to blood glucose. As the
rate-limiting, flux-controlling enzyme of glucose entry into glycolysis in liver
and beta cells, GCK regulates glycolytic flux.
action: ACCEPT
reason: GCK is the flux-controlling first enzyme of glycolysis in its tissues,
so regulation of glycolytic process is a reasonable, non-experimental (NAS)
assertion of its role.
supported_by:
- reference_id: PMID:9570959
supporting_text: Glucokinase plays an important role in regulating insulin secretion
in response to changes in blood glucose levels
- term:
id: GO:0032869
label: cellular response to insulin stimulus
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: ISS transfer of cellular response to insulin stimulus from an ortholog.
In the liver, GCK expression is induced by insulin (insulin-dependent regulation
via the alternative liver promoter), so its expression/activity responds to
insulin.
action: ACCEPT
reason: Hepatic GCK is insulin-regulated (insulin induces liver GCK); a reasonable
orthology-based transfer consistent with UniProt.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: hexokinase gene to be regulated by insulin in the liver
- term:
id: GO:0042593
label: glucose homeostasis
evidence_type: IMP
original_reference_id: PMID:20668700
qualifier: involved_in
review:
summary: IMP annotation from a genetic-association study showing common GCK variants
(rs1799884) modulate fasting glucose and insulin secretion, supporting GCK's
role in glucose homeostasis.
action: ACCEPT
reason: Human genetic variation in GCK affects fasting glucose levels, consistent
with GCK being a determinant of glucose homeostasis.
supported_by:
- reference_id: PMID:20668700
supporting_text: GCK, G6PC2 and MTNR1B variants modulated fasting glucose levels
- term:
id: GO:0044320
label: cellular response to leptin stimulus
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: ISS transfer of cellular response to leptin stimulus from an ortholog
(UniProtKB:P17712). There is no direct human evidence that GCK participates
in leptin signaling; this is a distal orthology-based association rather than
a direct molecular role of glucokinase.
action: MARK_AS_OVER_ANNOTATED
reason: Weakly supported ISS transfer. No direct evidence for a GCK role in leptin
response in the cited human record; treated as an over-annotation pending experimental
support.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: Catalyzes the phosphorylation of hexose, such as D-glucose,
- term:
id: GO:0050796
label: regulation of insulin secretion
evidence_type: IMP
original_reference_id: PMID:20668700
qualifier: involved_in
review:
summary: IMP annotation from a genetic-association study showing GCK variants
affect first- and second-phase insulin secretion, supporting GCK's role in
regulating insulin secretion.
action: ACCEPT
reason: Human GCK genetic variation affects insulin secretion phases, consistent
with beta-cell GCK regulating insulin secretion.
supported_by:
- reference_id: PMID:20668700
supporting_text: GCK and G6PC2 genetic variants were associated to both first-
and second-phases insulin secretion
- term:
id: GO:0004340
label: glucokinase activity
evidence_type: IDA
original_reference_id: PMID:16173921
qualifier: enables
review:
summary: IDA of glucokinase activity from enzymatic assays of affinity-purified
recombinant human islet GCK (wild-type and MODY2 mutants), directly measuring
the glucose-phosphorylating activity.
action: ACCEPT
reason: Direct in-vitro enzyme assays of purified human GCK; core molecular function.
supported_by:
- reference_id: PMID:16173921
supporting_text: Enzymatic assays on the recombinant proteins revealed that
mutations Thr206-->Met and Leu165-->Phe strongly affect the kinetic parameters
of glucokinase
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16173921
qualifier: enables
review:
summary: IPI annotation. This paper tested the interaction of GCK MODY2 mutants
with the glucokinase regulatory protein (GKRP/GCKR) in a yeast two-hybrid system.
The generic protein binding term is uninformative as a molecular function.
action: MARK_AS_OVER_ANNOTATED
reason: Bare protein binding (GO:0005515) is uninformative per curation guidelines.
The specific GCK-GCKR interaction is a well-established, biologically important
relationship captured in the description/notes; the IPI is retained but flagged.
supported_by:
- reference_id: PMID:16173921
supporting_text: none of the mutations tested appears to affect the interaction
of gluco-kinase with the glucokinase regulatory protein in the yeast two-hybrid
system
- term:
id: GO:0005524
label: ATP binding
evidence_type: IDA
original_reference_id: PMID:16173921
qualifier: enables
review:
summary: IDA of ATP binding, inferred from enzymatic assays of the purified recombinant
GCK using ATP as the phosphoryl-donor co-substrate. ATP binding is also documented
structurally.
action: ACCEPT
reason: GCK binds ATP as its co-substrate; supported by kinetic assays and structural
studies.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: KM=4.5 mM for ATP (at pH 7)
- term:
id: GO:0005536
label: D-glucose binding
evidence_type: IDA
original_reference_id: PMID:16173921
qualifier: enables
review:
summary: IDA of D-glucose binding from kinetic assays of purified recombinant
GCK measuring glucose-dependent activity; glucose binding is the substrate-recognition
function of glucokinase.
action: ACCEPT
reason: Glucose binding is a core molecular activity of GCK, directly supported
by enzyme kinetics and glucose-bound structures.
supported_by:
- reference_id: PMID:16173921
supporting_text: mutations Thr206-->Met and Leu165-->Phe strongly affect the
kinetic parameters of glucokinase, in agreement with the localization of both
residues close to the active site
- term:
id: GO:0032024
label: positive regulation of insulin secretion
evidence_type: IMP
original_reference_id: PMID:8878425
qualifier: involved_in
review:
summary: IMP annotation from a study of glucokinase-deficient (MODY2) subjects.
Impaired GCK reduces insulin secretion, indicating GCK positively regulates
glucose-stimulated insulin secretion.
action: ACCEPT
reason: Loss of GCK function impairs insulin secretion in human subjects; GCK
positively regulates insulin secretion.
supported_by:
- reference_id: PMID:8878425
supporting_text: impaired insulin secretion has been observed in glucokinase-deficient
subjects
- term:
id: GO:0045721
label: negative regulation of gluconeogenesis
evidence_type: IMP
original_reference_id: PMID:8878425
qualifier: involved_in
review:
summary: IMP annotation. In glucokinase-deficient (MODY2) subjects, hepatic gluconeogenesis
after meals was relatively augmented, implying that normal hepatic GCK activity
suppresses gluconeogenic flux.
action: ACCEPT
reason: MODY2 subjects show augmented hepatic gluconeogenesis, so functional GCK
normally restrains gluconeogenesis; a documented hepatic role.
supported_by:
- reference_id: PMID:8878425
supporting_text: glucokinase-deficient subjects have decreased net accumulation
of hepatic glycogen and relatively augmented hepatic gluconeogenesis after
meals
- term:
id: GO:0045725
label: positive regulation of glycogen biosynthetic process
evidence_type: IMP
original_reference_id: PMID:8878425
qualifier: involved_in
review:
summary: IMP annotation. Glucokinase-deficient (MODY2) subjects have decreased
net hepatic glycogen accumulation after meals, showing that hepatic GCK is required
to provide G6P for and to promote glycogen synthesis.
action: ACCEPT
reason: Loss of GCK reduces hepatic glycogen synthesis; GCK positively regulates
glycogen biosynthesis by providing glucose 6-phosphate.
supported_by:
- reference_id: PMID:8878425
supporting_text: the net increment in hepatic glycogen content after each meal
was 30-60% lower in glucokinase-deficient than in the control subjects
- term:
id: GO:0004340
label: glucokinase activity
evidence_type: IDA
original_reference_id: PMID:12941786
qualifier: enables
review:
summary: IDA of glucokinase activity from functional analysis of purified recombinant
GST-GCK fusion proteins (wild-type and activating T65I/W99R mutants), measuring
the phosphorylating potential (activity index).
action: ACCEPT
reason: Direct in-vitro enzyme assays of purified human GCK; core molecular function.
supported_by:
- reference_id: PMID:12941786
supporting_text: Functional analysis of the purified recombinant glutathionyl
S-transferase fusion proteins of T65I and W99R GCK revealed that the kinetic
changes result in a relative increased activity index
- term:
id: GO:0004340
label: glucokinase activity
evidence_type: IDA
original_reference_id: PMID:8446612
qualifier: enables
review:
summary: IDA of glucokinase activity from expression of native and mutant human
beta-cell glucokinase in E. coli and measurement of enzyme activity (Vmax, Km
for glucose).
action: ACCEPT
reason: Direct in-vitro enzyme assays of the human enzyme; core molecular function.
supported_by:
- reference_id: PMID:8446612
supporting_text: we have expressed
native and mutant forms of this protein in Escherichia coli. All of the missense
mutations show changes in enzyme activity
- term:
id: GO:0005524
label: ATP binding
evidence_type: IDA
original_reference_id: PMID:12941786
qualifier: enables
review:
summary: IDA of ATP binding, from functional assays of purified recombinant GCK
that require ATP as the phosphoryl-donor co-substrate; ATP binding is also documented
structurally.
action: ACCEPT
reason: GCK binds ATP as its co-substrate; supported by enzyme kinetics and structure.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: KM=4.5 mM for ATP (at pH 7)
- term:
id: GO:0005524
label: ATP binding
evidence_type: IDA
original_reference_id: PMID:8446612
qualifier: enables
review:
summary: IDA of ATP binding from enzyme-activity assays of purified human GCK
that use ATP as substrate; consistent with structural evidence for ATP binding.
action: ACCEPT
reason: GCK binds ATP as its phosphoryl-donor substrate; well supported.
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: KM=4.5 mM for ATP (at pH 7)
- term:
id: GO:0005536
label: D-glucose binding
evidence_type: IDA
original_reference_id: PMID:12941786
qualifier: enables
review:
summary: IDA of D-glucose binding from kinetic characterization of purified GCK
(activating mutations accelerate glucose binding to the apoenzyme); glucose
binding is the substrate-recognition function of GCK.
action: ACCEPT
reason: Glucose binding is a core molecular activity of GCK; directly characterized
kinetically.
supported_by:
- reference_id: PMID:12941786
supporting_text: These mutations are within the recently
identified heterotropic allosteric activator site
- term:
id: GO:0005536
label: D-glucose binding
evidence_type: IDA
original_reference_id: PMID:8446612
qualifier: enables
review:
summary: IDA of D-glucose binding from enzyme assays of purified human GCK measuring
Km for glucose across wild-type and mutant enzymes.
action: ACCEPT
reason: Glucose binding is a core molecular activity of GCK; directly measured
as Km for glucose.
supported_by:
- reference_id: PMID:8446612
supporting_text: increase in Km for glucose
- term:
id: GO:0032024
label: positive regulation of insulin secretion
evidence_type: IMP
original_reference_id: PMID:8132752
qualifier: involved_in
review:
summary: IMP annotation from beta-cell function studies of human GCK-mutation
carriers, showing a right-shifted glucose/insulin-secretion dose-response curve,
demonstrating GCK's positive control of glucose-stimulated insulin secretion.
action: ACCEPT
reason: GCK mutation carriers show reduced/shifted insulin secretion, establishing
GCK's positive regulation of glucose-stimulated insulin secretion.
supported_by:
- reference_id: PMID:8132752
supporting_text: the dose-response curve relating
glucose and ISR obtained during graded intravenous glucose infusions was shifted
to the right in the subjects with GCK mutations
- term:
id: GO:0042593
label: glucose homeostasis
evidence_type: IMP
original_reference_id: PMID:8132752
qualifier: involved_in
review:
summary: IMP annotation from studies of GCK-mutation carriers demonstrating that
GCK sets the in-vivo glucose/insulin-secretion relationship, a central mechanism
of glucose homeostasis.
action: ACCEPT
reason: GCK is a key determinant of the in-vivo glucose/insulin dose-response,
i.e. of glucose homeostasis; supported by human mutation studies.
supported_by:
- reference_id: PMID:8132752
supporting_text: support a key role for the enzyme GCK in determining the in
vivo glucose/ISR dose-response relationships
references:
- id: file:human/GCK/GCK-uniprot.txt
title: UniProtKB entry P35557 (HXK4_HUMAN), glucokinase / hexokinase-4
findings: []
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO
terms
findings: []
- id: GO_REF:0000024
title: Manual transfer of experimentally-verified manual GO annotation data to orthologs
by curator judgment of sequence similarity
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000041
title: Gene Ontology annotation based on UniPathway vocabulary mapping
findings: []
- id: GO_REF:0000052
title: Gene Ontology annotation based on curation of immunofluorescence data
findings: []
- id: GO_REF:0000107
title: Automatic transfer of experimentally verified manual GO annotation data to
orthologs using Ensembl Compara
findings: []
- id: GO_REF:0000116
title: Automatic Gene Ontology annotation based on Rhea mapping
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning models
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:10456334
title: Glucokinase regulatory protein is essential for the proper subcellular localisation
of liver glucokinase.
findings: []
- id: PMID:11522786
title: Characterization of glucokinase-binding protein epitopes by a phage-displayed
peptide library. Identification of 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase
as a novel interaction partner.
findings: []
- id: PMID:11916951
title: 'The second activating glucokinase mutation (A456V): implications for glucose
homeostasis and diabetes therapy.'
findings: []
- id: PMID:12941786
title: Insights into the biochemical and genetic basis of glucokinase activation
from naturally occurring hypoglycemia mutations.
findings: []
- id: PMID:15277402
title: Severe persistent hyperinsulinemic hypoglycemia due to a de novo glucokinase
mutation.
findings: []
- id: PMID:16173921
title: Effects of novel maturity-onset diabetes of the young (MODY)-associated mutations
on glucokinase activity and protein stability.
findings: []
- id: PMID:17082186
title: Biochemical basis of glucokinase activation and the regulation by glucokinase
regulatory protein in naturally occurring mutations.
findings: []
- id: PMID:18322640
title: Biochemical characterization of novel glucokinase mutations isolated from
Spanish maturity-onset diabetes of the young (MODY2) patients.
findings: []
- id: PMID:19146401
title: Activating mutations in the human glucokinase gene revealed by genetic selection.
findings: []
- id: PMID:20668700
title: Effects of GCK, GCKR, G6PC2 and MTNR1B variants on glucose metabolism and
insulin secretion.
findings: []
- id: PMID:22611063
title: Insights into the pathogenicity of rare missense GCK variants from the identification
and functional characterization of compound heterozygous and double mutations
inherited in cis.
findings: []
- id: PMID:24187134
title: Identification of the ubiquitin-like domain of midnolin as a new glucokinase
interaction partner.
findings: []
- id: PMID:25015100
title: Phenotypic severity of homozygous GCK mutations causing neonatal or childhood-onset
diabetes is primarily mediated through effects on protein stability.
findings: []
- id: PMID:32296183
title: A reference map of the human binary protein interactome.
findings: []
- id: PMID:7742312
title: 'Sugar specificity of human beta-cell glucokinase: correlation of molecular
models with kinetic measurements.'
findings: []
- id: PMID:8132752
title: Insulin secretory abnormalities in subjects with hyperglycemia due to glucokinase
mutations.
findings: []
- id: PMID:8325892
title: Structure/function studies of human beta-cell glucokinase. Enzymatic properties
of a sequence polymorphism, mutations associated with diabetes, and other site-directed
mutants.
findings: []
- id: PMID:8446612
title: 'Glucokinase mutations associated with non-insulin-dependent (type 2) diabetes
mellitus have decreased enzymatic activity: implications for structure/function
relationships.'
findings: []
- id: PMID:8878425
title: Impaired hepatic glycogen synthesis in glucokinase-deficient (MODY-2) subjects.
findings: []
- id: PMID:9570959
title: Organization of the human glucokinase regulator gene GCKR.
findings: []
- id: Reactome:R-HSA-170796
title: NPC transports GCK1:GCKR from cytosol to nucleoplasm
findings: []
- id: Reactome:R-HSA-170799
title: cytosolic GCK1:GKRP complex <=> glucokinase (GCK1) + glucokinase regulatory
protein (GKRP)
findings: []
- id: Reactome:R-HSA-170810
title: nucleoplasmic GCK1:GCKR complex => glucokinase (GCK1) + glucokinase regulatory
protein (GCKR)
findings: []
- id: Reactome:R-HSA-170824
title: glucokinase (GCK1) + glucokinase regulatory protein (GKRP) <=> GCK1:GKRP
complex
findings: []
- id: Reactome:R-HSA-170825
title: NPC exports GCK1 from nucleus
findings: []
- id: Reactome:R-HSA-5621918
title: Defective GCK does not phosphorylate Glc to form G6P
findings: []
- id: Reactome:R-HSA-5661474
title: Defective NPC does not transport GCK1:GKRP from cytosol to nucleoplasm
findings: []
- id: Reactome:R-HSA-70171
title: Glycolysis
findings: []
- id: Reactome:R-HSA-70420
title: HK1,2,3,GCK,HKDC1 phosphorylate Glc to form G6P
findings: []
core_functions:
- description: ATP-dependent phosphorylation of D-glucose to D-glucose 6-phosphate,
the committed first step of glucose utilization, catalyzed by a low-affinity (high-KM),
cooperative, product-inhibition-resistant enzyme that thereby functions as the
cellular glucose sensor.
molecular_function:
id: GO:0004340
label: glucokinase activity
directly_involved_in:
- id: GO:0006006
label: glucose metabolic process
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: Mediates the initial step of glycolysis by catalyzing
- description: In the pancreatic beta cell, glucokinase acts as the glucose sensor
that sets the threshold for glucose-stimulated insulin secretion; the low glucose
affinity ensures its activity tracks glucose across the physiological range, so
it is the flux-controlling determinant coupling glycolytic glucose metabolism
to insulin release.
molecular_function:
id: GO:0004340
label: glucokinase activity
directly_involved_in:
- id: GO:0006096
label: glycolytic process
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: GCK acts as a glucose sensor in the pancreatic beta
- description: Glucokinase is a central determinant of whole-body glucose homeostasis;
in the liver it drives glucose uptake and glycogen synthesis and restrains gluconeogenesis,
and its loss (MODY2/PNDM) or gain (hyperinsulinism) of function shifts the glucose
set-point.
molecular_function:
id: GO:0004340
label: glucokinase activity
directly_involved_in:
- id: GO:0042593
label: glucose homeostasis
locations:
- id: GO:0005829
label: cytosol
supported_by:
- reference_id: file:human/GCK/GCK-uniprot.txt
supporting_text: insulin-sensitive determinant of hepatic glucose usage