Glycerol kinase 5, tissue-specialized glycerol kinase enzyme predominantly expressed in skin sebaceous glands. Member of FGGY carbohydrate kinase family. Catalyzes ATP-dependent phosphorylation of glycerol to produce sn-glycerol-3-phosphate, the first step of glycerol utilization pathway. ~60 kDa protein with catalytic aspartate residues (Asp-280, Asp-443) essential for enzymatic activity. Cytosolic enzyme with distinct dual role: (1) Metabolic function - provides glycerol-3-phosphate for triglyceride synthesis in sebaceous glands; (2) Regulatory function - negatively regulates SREBP (sterol regulatory element-binding protein) processing and activation. Binds C-terminal regulatory domain of SREBP-1 and SREBP-2, inhibiting their cleavage and nuclear translocation, thereby limiting expression of lipid biosynthetic genes in skin. Skin-specific negative regulator of cholesterol and fatty acid synthesis - loss causes excessive lipid accumulation (cholesterol, triglycerides, ceramides) in sebaceous glands and pronounced alopecia in mice. GK5-deficient Gk5^toku mouse exhibits ~80% lethality due to hair growth defects, rescuable by simvastatin (HMG-CoA reductase inhibitor). Kinase activity essential for SREBP regulatory function - catalytically-dead mutants fail to suppress SREBP activation. Distinguishable from X-linked glycerol kinase (GK) which cannot compensate for GK5's regulatory role. Expression widespread at mRNA level but protein predominantly in skin; enriched in sebaceous glands. In cancer, GK5 upregulated in gefitinib-resistant NSCLC cells where it promotes cell survival through SREBP1/SCD1 pathway, conferring drug resistance. GK5 enables cancer cells to maintain lipogenesis and resist apoptosis under EGFR inhibition. Potential therapeutic target in oncology and dermatology.
Definition: A negative regulator of the SREBP (sterol regulatory element-binding protein) signaling pathway that acts by binding directly to the C-terminal regulatory domain of SREBP-1 and/or SREBP-2, thereby inhibiting their proteolytic processing/activation and limiting nuclear accumulation of mature SREBP transcription factors. The SREBP binding itself is kinase-independent, but in vivo the inhibitory function requires GK5 kinase activity: kinase-inactive GK5 mutant mice phenocopy the null (PMID:28607088), demonstrating that catalytic activity is required even though the SREBP interaction is not. This function is exemplified by GK5 in skin sebaceous glands, where loss of function causes elevated SREBP-driven lipogenesis, sebaceous lipid accumulation, and alopecia.
Supporting Evidence:
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
| GO:0004370 glycerol kinase activity | IBA GO_REF:0000033 | ACCEPT | Summary: Glycerol kinase activity - phosphorylates glycerol to glycerol-3-phosphate. Reason: Core enzymatic function. Supporting Evidence: file:human/GK5/GK5-deep-research-openai.md See deep research file for comprehensive analysis PMID:28607088 encoding glycerol kinase 5 (GK5), a skin-specific kinase expressed predominantly in sebaceous glands |
| GO:0005739 mitochondrion | IBA GO_REF:0000033 | REMOVE | Summary: Mitochondrion β experimental localization studies and the SREBP- regulatory mechanism (cytoplasmic) are consistent with GK5 acting outside the mitochondrion. Removed per PR #755 review feedback; the functional and biochemical literature does not place GK5 in mitochondria. Reason: Localization incorrect based on functional studies. Zhang 2017 (PMID:28607088) characterizes GK5 as a cytoplasmic kinase that binds the SREBP C-terminal regulatory domain to inhibit SREBP processing, consistent with cytosolic / non-mitochondrial localization. Supporting Evidence: PMID:28607088 GK5 formed a complex with the sterol regulatory element-binding proteins (SREBPs) through their C-terminal regulatory domains, inhibiting SREBP processing and activation. |
| GO:0046167 glycerol-3-phosphate biosynthetic process | IBA GO_REF:0000033 | ACCEPT | Summary: Glycerol-3-phosphate biosynthetic process - produces glycerol-3-phosphate. Reason: Core metabolic role. |
| GO:0006071 glycerol metabolic process | IBA GO_REF:0000033 | ACCEPT | Summary: Glycerol metabolic process - first step of glycerol utilization. Reason: Core metabolic function. |
| GO:0006641 triglyceride metabolic process | IBA GO_REF:0000033 | ACCEPT | Summary: Triglyceride metabolic process - glycerol-3-phosphate feeds into TG synthesis. Reason: Metabolic role. |
| GO:0000166 nucleotide binding | IEA GO_REF:0000043 | ACCEPT | Summary: Nucleotide binding - binds ATP for phosphorylation reaction. Reason: Enzymatic requirement. |
| GO:0004370 glycerol kinase activity | IEA GO_REF:0000120 | ACCEPT | Summary: Glycerol kinase activity - phosphorylates glycerol to glycerol-3-phosphate. Reason: Core enzymatic function. |
| GO:0005524 ATP binding | IEA GO_REF:0000043 | ACCEPT | Summary: ATP binding - ATP-dependent kinase. Reason: Enzymatic requirement. |
| GO:0005737 cytoplasm | IEA GO_REF:0000120 | ACCEPT | Summary: Cytoplasm - cytosolic enzyme. Reason: Core localization. Supporting Evidence: file:human/GK5/GK5-deep-research-falcon.md FLAG-tagged GK5 (isoform v2 in the cited work) localized mainly to the cytoplasm in transfected NIH 3T3 cells. |
| GO:0005975 carbohydrate metabolic process | IEA GO_REF:0000002 | ACCEPT | Summary: Carbohydrate metabolic process - glycerol is polyol/carbohydrate metabolite. Reason: Metabolic role. |
| GO:0006071 glycerol metabolic process | IEA GO_REF:0000043 | ACCEPT | Summary: Glycerol metabolic process - first step of glycerol utilization. Reason: Core metabolic function. |
| GO:0016301 kinase activity | IEA GO_REF:0000120 | ACCEPT | Summary: Kinase activity - ATP-dependent phosphotransferase. Reason: Enzymatic classification. |
| GO:0016740 transferase activity | IEA GO_REF:0000043 | ACCEPT | Summary: Transferase activity - transfers phosphate from ATP to glycerol. Reason: Enzymatic classification. |
| GO:0016773 phosphotransferase activity, alcohol group as acceptor | IEA GO_REF:0000002 | ACCEPT | Summary: Phosphotransferase activity, alcohol group as acceptor - glycerol hydroxyl as acceptor. Reason: Specific enzymatic activity. |
| GO:0046167 glycerol-3-phosphate biosynthetic process | IEA GO_REF:0000107 | ACCEPT | Summary: Glycerol-3-phosphate biosynthetic process - produces glycerol-3-phosphate. Reason: Core metabolic role. |
| GO:0005739 mitochondrion | HTP PMID:34800366 Quantitative high-confidence human mitochondrial proteome an... | REMOVE | Summary: Mitochondrion (HTP) β the original annotation is from the PMID:34800366 mitochondrial-proteome screen. Counter-evidence: the functional / biochemical literature (Zhang 2017, PMID:28607088) characterizes GK5 as a cytoplasmic kinase that binds the SREBP C-terminal regulatory domain to inhibit SREBP processing, consistent with cytosolic / non-mitochondrial localization. Per PR #755 review feedback, supported_by replaced with the cytoplasmic localization evidence (citing the annotating paper itself does not support its removal). Reason: Localization incorrect based on functional studies. Zhang 2017 (PMID:28607088) characterizes GK5 as a cytoplasmic kinase that binds the SREBP C-terminal regulatory domain. Supporting Evidence: PMID:28607088 GK5 formed a complex with the sterol regulatory element-binding proteins (SREBPs) through their C-terminal regulatory domains, inhibiting SREBP processing and activation. |
| GO:0004370 glycerol kinase activity | ISS GO_REF:0000024 | ACCEPT | Summary: Glycerol kinase activity - phosphorylates glycerol to glycerol-3-phosphate. Reason: Core enzymatic function. |
| GO:0005737 cytoplasm | ISS GO_REF:0000024 | ACCEPT | Summary: Cytoplasm - cytosolic enzyme. Reason: Core localization. |
| GO:0046167 glycerol-3-phosphate biosynthetic process | ISS GO_REF:0000024 | ACCEPT | Summary: Glycerol-3-phosphate biosynthetic process - produces glycerol-3-phosphate. Reason: Core metabolic role. |
| GO:0019563 glycerol catabolic process | IEA GO_REF:0000041 | KEEP AS NON CORE | Summary: Glycerol catabolic process - involved in glycerol breakdown to G3P. Reason: Catabolic aspect of function. |
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