GK5

UniProt ID: Q6ZS86
Organism: Homo sapiens
Review Status: COMPLETE
Aliases:
Glycerol kinase 5 GLPK5
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Gene Description

Glycerol kinase 5, tissue-specialized glycerol kinase enzyme predominantly expressed in skin sebaceous glands. Member of FGGY carbohydrate kinase family. Catalyzes ATP-dependent phosphorylation of glycerol to produce sn-glycerol-3-phosphate, the first step of glycerol utilization pathway. ~60 kDa protein with catalytic aspartate residues (Asp-280, Asp-443) essential for enzymatic activity. Cytosolic enzyme with distinct dual role: (1) Metabolic function - provides glycerol-3-phosphate for triglyceride synthesis in sebaceous glands; (2) Regulatory function - negatively regulates SREBP (sterol regulatory element-binding protein) processing and activation. Binds C-terminal regulatory domain of SREBP-1 and SREBP-2, inhibiting their cleavage and nuclear translocation, thereby limiting expression of lipid biosynthetic genes in skin. Skin-specific negative regulator of cholesterol and fatty acid synthesis - loss causes excessive lipid accumulation (cholesterol, triglycerides, ceramides) in sebaceous glands and pronounced alopecia in mice. GK5-deficient Gk5^toku mouse exhibits ~80% lethality due to hair growth defects, rescuable by simvastatin (HMG-CoA reductase inhibitor). Kinase activity essential for SREBP regulatory function - catalytically-dead mutants fail to suppress SREBP activation. Distinguishable from X-linked glycerol kinase (GK) which cannot compensate for GK5's regulatory role. Expression widespread at mRNA level but protein predominantly in skin; enriched in sebaceous glands. In cancer, GK5 upregulated in gefitinib-resistant NSCLC cells where it promotes cell survival through SREBP1/SCD1 pathway, conferring drug resistance. GK5 enables cancer cells to maintain lipogenesis and resist apoptosis under EGFR inhibition. Potential therapeutic target in oncology and dermatology.

Proposed New Ontology Terms

negative regulation of SREBP signaling pathway by direct binding to SREBP C-terminal regulatory domain

Definition: A negative regulator of the SREBP (sterol regulatory element-binding protein) signaling pathway that acts by binding directly to the C-terminal regulatory domain of SREBP-1 and/or SREBP-2, thereby inhibiting their proteolytic processing/activation and limiting nuclear accumulation of mature SREBP transcription factors. The SREBP binding itself is kinase-independent, but in vivo the inhibitory function requires GK5 kinase activity: kinase-inactive GK5 mutant mice phenocopy the null (PMID:28607088), demonstrating that catalytic activity is required even though the SREBP interaction is not. This function is exemplified by GK5 in skin sebaceous glands, where loss of function causes elevated SREBP-driven lipogenesis, sebaceous lipid accumulation, and alopecia.

Supporting Evidence:

Existing Annotations Review

GO Term Evidence Action Reason
GO:0004370 glycerol kinase activity
IBA
GO_REF:0000033
ACCEPT
Summary: Glycerol kinase activity - phosphorylates glycerol to glycerol-3-phosphate.
Reason: Core enzymatic function.
Supporting Evidence:
file:human/GK5/GK5-deep-research-openai.md
See deep research file for comprehensive analysis
PMID:28607088
encoding glycerol kinase 5 (GK5), a skin-specific kinase expressed predominantly in sebaceous glands
GO:0005739 mitochondrion
IBA
GO_REF:0000033
REMOVE
Summary: Mitochondrion β€” experimental localization studies and the SREBP- regulatory mechanism (cytoplasmic) are consistent with GK5 acting outside the mitochondrion. Removed per PR #755 review feedback; the functional and biochemical literature does not place GK5 in mitochondria.
Reason: Localization incorrect based on functional studies. Zhang 2017 (PMID:28607088) characterizes GK5 as a cytoplasmic kinase that binds the SREBP C-terminal regulatory domain to inhibit SREBP processing, consistent with cytosolic / non-mitochondrial localization.
Supporting Evidence:
PMID:28607088
GK5 formed a complex with the sterol regulatory element-binding proteins (SREBPs) through their C-terminal regulatory domains, inhibiting SREBP processing and activation.
GO:0046167 glycerol-3-phosphate biosynthetic process
IBA
GO_REF:0000033
ACCEPT
Summary: Glycerol-3-phosphate biosynthetic process - produces glycerol-3-phosphate.
Reason: Core metabolic role.
GO:0006071 glycerol metabolic process
IBA
GO_REF:0000033
ACCEPT
Summary: Glycerol metabolic process - first step of glycerol utilization.
Reason: Core metabolic function.
GO:0006641 triglyceride metabolic process
IBA
GO_REF:0000033
ACCEPT
Summary: Triglyceride metabolic process - glycerol-3-phosphate feeds into TG synthesis.
Reason: Metabolic role.
GO:0000166 nucleotide binding
IEA
GO_REF:0000043
ACCEPT
Summary: Nucleotide binding - binds ATP for phosphorylation reaction.
Reason: Enzymatic requirement.
GO:0004370 glycerol kinase activity
IEA
GO_REF:0000120
ACCEPT
Summary: Glycerol kinase activity - phosphorylates glycerol to glycerol-3-phosphate.
Reason: Core enzymatic function.
GO:0005524 ATP binding
IEA
GO_REF:0000043
ACCEPT
Summary: ATP binding - ATP-dependent kinase.
Reason: Enzymatic requirement.
GO:0005737 cytoplasm
IEA
GO_REF:0000120
ACCEPT
Summary: Cytoplasm - cytosolic enzyme.
Reason: Core localization.
Supporting Evidence:
file:human/GK5/GK5-deep-research-falcon.md
FLAG-tagged GK5 (isoform v2 in the cited work) localized mainly to the cytoplasm in transfected NIH 3T3 cells.
GO:0005975 carbohydrate metabolic process
IEA
GO_REF:0000002
ACCEPT
Summary: Carbohydrate metabolic process - glycerol is polyol/carbohydrate metabolite.
Reason: Metabolic role.
GO:0006071 glycerol metabolic process
IEA
GO_REF:0000043
ACCEPT
Summary: Glycerol metabolic process - first step of glycerol utilization.
Reason: Core metabolic function.
GO:0016301 kinase activity
IEA
GO_REF:0000120
ACCEPT
Summary: Kinase activity - ATP-dependent phosphotransferase.
Reason: Enzymatic classification.
GO:0016740 transferase activity
IEA
GO_REF:0000043
ACCEPT
Summary: Transferase activity - transfers phosphate from ATP to glycerol.
Reason: Enzymatic classification.
GO:0016773 phosphotransferase activity, alcohol group as acceptor
IEA
GO_REF:0000002
ACCEPT
Summary: Phosphotransferase activity, alcohol group as acceptor - glycerol hydroxyl as acceptor.
Reason: Specific enzymatic activity.
GO:0046167 glycerol-3-phosphate biosynthetic process
IEA
GO_REF:0000107
ACCEPT
Summary: Glycerol-3-phosphate biosynthetic process - produces glycerol-3-phosphate.
Reason: Core metabolic role.
GO:0005739 mitochondrion
HTP
PMID:34800366
Quantitative high-confidence human mitochondrial proteome an...
REMOVE
Summary: Mitochondrion (HTP) β€” the original annotation is from the PMID:34800366 mitochondrial-proteome screen. Counter-evidence: the functional / biochemical literature (Zhang 2017, PMID:28607088) characterizes GK5 as a cytoplasmic kinase that binds the SREBP C-terminal regulatory domain to inhibit SREBP processing, consistent with cytosolic / non-mitochondrial localization. Per PR #755 review feedback, supported_by replaced with the cytoplasmic localization evidence (citing the annotating paper itself does not support its removal).
Reason: Localization incorrect based on functional studies. Zhang 2017 (PMID:28607088) characterizes GK5 as a cytoplasmic kinase that binds the SREBP C-terminal regulatory domain.
Supporting Evidence:
PMID:28607088
GK5 formed a complex with the sterol regulatory element-binding proteins (SREBPs) through their C-terminal regulatory domains, inhibiting SREBP processing and activation.
GO:0004370 glycerol kinase activity
ISS
GO_REF:0000024
ACCEPT
Summary: Glycerol kinase activity - phosphorylates glycerol to glycerol-3-phosphate.
Reason: Core enzymatic function.
GO:0005737 cytoplasm
ISS
GO_REF:0000024
ACCEPT
Summary: Cytoplasm - cytosolic enzyme.
Reason: Core localization.
GO:0046167 glycerol-3-phosphate biosynthetic process
ISS
GO_REF:0000024
ACCEPT
Summary: Glycerol-3-phosphate biosynthetic process - produces glycerol-3-phosphate.
Reason: Core metabolic role.
GO:0019563 glycerol catabolic process
IEA
GO_REF:0000041
KEEP AS NON CORE
Summary: Glycerol catabolic process - involved in glycerol breakdown to G3P.
Reason: Catabolic aspect of function.

Core Functions

ATP-dependent glycerol kinase that phosphorylates glycerol to produce glycerol-3-phosphate. Predominantly expressed in skin sebaceous glands where it has dual role: metabolic (provides G3P for lipid synthesis) and regulatory (inhibits SREBP processing to limit lipogenesis). Kinase activity essential for SREBP regulation. Loss causes alopecia and lipid accumulation in skin.

Supporting Evidence:
  • file:human/GK5/GK5-uniprot.txt
    GK5 is skin-specialized glycerol kinase that negatively regulates SREBP signaling. Gk5^toku mouse exhibits alopecia and excessive sebum lipid accumulation. Kinase activity required for regulatory function.
  • PMID:28607088
    GK5 formed a complex with the sterol regulatory element-binding proteins (SREBPs) through their C-terminal regulatory domains, inhibiting SREBP processing and activation.

References

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Deep Research

Falcon

(GK5-deep-research-falcon.md)

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OpenAI

(GK5-deep-research-openai.md)

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