GLS (kidney-type glutaminase, also known as GLS1) is a mitochondrial, phosphate-activated glutaminase (EC 3.5.1.2) that catalyzes the hydrolytic deamidation of L-glutamine to L-glutamate plus ammonia, the first and committed step of glutaminolysis. The gene produces two catalytically active splice isoforms, KGA (isoform 1) and the shorter GAC/glutaminase C (isoform 3), and a catalytically inactive muscle isoform GAM (isoform 2). The enzyme is synthesized as a ~74-kDa cytosolic precursor that is imported into mitochondria and processed by the mitochondrial-processing peptidase into mature 68- and 65-kDa chains that reside in the mitochondrial matrix. It assembles into homotetramers (dimers of dimers), and phosphate-driven tetramerization is coupled to catalytic activation; C-terminal ankyrin repeats modulate higher-order assembly. The glutamate produced feeds the TCA cycle (via glutamate dehydrogenase and transaminases to alpha-ketoglutarate) for energy and anaplerosis. GLS is central to renal ammoniagenesis and acid-base homeostasis, to the brain glutamate/glutamine cycle that supplies neurotransmitter glutamate, and to the elevated glutamine metabolism of many proliferating cancers, where it is an actively pursued drug target (allosteric inhibitors such as BPTES and CB-839/telaglenastat). Loss-of-function GLS variants cause severe neonatal developmental and epileptic encephalopathy and a global developmental delay/ataxia syndrome, whereas a gain-of-function variant causes cataract with glutamate excess and profound developmental delay.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0004359
glutaminase activity
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phylogenetically-inferred glutaminase activity. This is the well-established core molecular function of GLS, confirmed directly by multiple experimental structural-enzymology studies and by the UniProt catalytic-activity annotation (EC 3.5.1.2, L-glutamine + H2O = L-glutamate + NH4+).
Supporting Evidence:
file:human/GLS/GLS-uniprot.txt
Reaction=L-glutamine + H2O = L-glutamate + NH4(+);
|
|
GO:0005739
mitochondrion
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phylogenetic inference that GLS is active in the mitochondrion. Correct: the mature enzyme is a mitochondrial (matrix) protein. Accepted as a core location.
Supporting Evidence:
PMID:22228304
GAC is distinctly mitochondrial
|
|
GO:0006543
L-glutamine catabolic process
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phylogenetically-inferred involvement in glutamine catabolism. This is the core biological process for GLS (glutaminolysis begins with glutamine hydrolysis). Accepted; also supported directly by IDA (PMID:22049910).
|
|
GO:0004359
glutaminase activity
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Electronic assertion of glutaminase activity (multiple IEA methods, incl. RHEA/EC/InterPro). Correct and redundant with the experimental annotations of the same term. Accepted as core MF.
|
|
GO:0005739
mitochondrion
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: UniProt SubCell mapping to mitochondrion. Correct core location; redundant with experimental mitochondrial annotations.
|
|
GO:0005759
mitochondrial matrix
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Electronic assertion of mitochondrial matrix localization. Consistent with the mature 68-/65-kDa chains being matrix proteins per UniProt. This is the specific compartment within the mitochondrion; accepted.
Supporting Evidence:
file:human/GLS/GLS-uniprot.txt
Mitochondrion matrix {ECO:0000250|UniProtKB:P13264}.
|
|
GO:0005829
cytosol
|
IEA
GO_REF:0000044 |
KEEP AS NON CORE |
Summary: UniProt SubCell mapping to cytosol. This reflects the ~74-kDa cytosolic precursor of isoform 1 before mitochondrial import, not a steady-state site of catalysis. Real but transient/non-core; keep as non-core.
Supporting Evidence:
file:human/GLS/GLS-uniprot.txt
Cytoplasm, cytosol
|
|
GO:0006520
amino acid metabolic process
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: ARBA electronic annotation to the very general parent 'amino acid metabolic process'. Not wrong, but far less informative than the specific L-glutamine catabolic / L-glutamate biosynthetic terms that are directly supported. Keep as a non-core general grouping term.
|
|
GO:0006541
L-glutamine metabolic process
|
IEA
GO_REF:0000002 |
KEEP AS NON CORE |
Summary: InterPro2GO electronic annotation to 'L-glutamine metabolic process', the parent of the specific catabolic term. Correct but general; the specific child GO:0006543 (L-glutamine catabolic process) is the appropriate core term and is already annotated. Generalize/keep as non-core.
|
|
GO:0006543
L-glutamine catabolic process
|
IEA
GO_REF:0000107 |
ACCEPT |
Summary: Ensembl-Compara electronic transfer of glutamine catabolic process. Correct core BP; redundant with IBA and IDA annotations of the same term.
|
|
GO:0051289
protein homotetramerization
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: Electronic transfer of protein homotetramerization. GLS does form homotetramers (dimers of dimers), so this captures a real quaternary-structure property rather than the enzyme's pathway function. Keep as non-core.
|
|
GO:0097054
L-glutamate biosynthetic process
|
IEA
GO_REF:0000107 |
ACCEPT |
Summary: Electronic transfer of L-glutamate biosynthetic process. This is the product side of the glutaminase reaction and is a legitimate core BP; redundant with the IDA (PMID:22049910) and TAS (PMID:21757002) annotations of the same term.
|
|
GO:0062133
negative regulation of L-glutamine biosynthetic process
|
IDA
PMID:16899818 Brain-specific BNIP-2-homology protein Caytaxin relocalises ... |
MARK AS OVER ANNOTATED |
Summary: Derived from the ATCAY/Caytaxin study (PMID:16899818). That paper shows that Caytaxin (ATCAY) binds and inhibits KGA and thereby lowers glutamate; it does not show that GLS itself negatively regulates glutamine biosynthesis. GLS degrades glutamine (catabolism) rather than regulating its synthesis, so this process term is a poor fit for GLS's own function. As an experimental IDA it is retained but flagged as an over-annotation.
Supporting Evidence:
PMID:16899818
It also reduced the steady-state
levels of glutamate by inhibiting KGA enzyme activity.
|
|
GO:0005739
mitochondrion
|
IDA
GO_REF:0000052 |
ACCEPT |
Summary: HPA immunofluorescence localization to mitochondrion. Consistent with all other evidence; accepted as core location.
|
|
GO:0004359
glutaminase activity
|
EXP
PMID:22538822 Structural basis for the allosteric inhibitory mechanism of ... |
ACCEPT |
Summary: Experimental glutaminase activity from the KGA structure/enzymology study (crystal structures with glutamate/glutamine substrate, catalytic-activity assays, active-site mutagenesis). Directly establishes the core molecular function. Accepted.
Supporting Evidence:
PMID:22538822
human kidney-type glutaminase isoform (KGA) is becoming an
attractive target
|
|
GO:0004359
glutaminase activity
|
EXP
PMID:24451979 Structural basis for the active site inhibition mechanism of... |
ACCEPT |
Summary: Experimental glutaminase activity confirmed by the cKGA active-site inhibition study: glutaminase assays plus active-site mutagenesis (Ser286, Lys289, Tyr249, Tyr466) that reduce activity. Directly supports the core MF. Accepted.
Supporting Evidence:
PMID:24451979
Glutaminase controls the first step in the glutaminolysis pathway by converting glutamine (Gln) to glutamate (Glu)
|
|
GO:0004359
glutaminase activity
|
EXP
PMID:26988803 Design and evaluation of novel glutaminase inhibitors. |
ACCEPT |
Summary: Experimental glutaminase activity from the glutaminase-inhibitor design study, which assayed catalytic activity and solved KGA/GAC structures. Supports the core MF. Accepted.
|
|
GO:0004359
glutaminase activity
|
EXP
PMID:28526749 The origin and evolution of human glutaminases and their aty... |
ACCEPT |
Summary: Experimental glutaminase activity from the glutaminase evolution/structure study (full-length KGA crystal structure with catalytic-activity determination). Supports the core MF. Accepted.
|
|
GO:0004359
glutaminase activity
|
EXP
PMID:29317493 Characterization of the interactions of potent allosteric in... |
ACCEPT |
Summary: Experimental glutaminase activity from the GAC allosteric-inhibitor study, which measured enzymatic activity of recombinant GAC. Supports the core MF. Accepted.
Supporting Evidence:
PMID:29317493
glutaminase C
(GAC), which catalyzes the first step in glutamine metabolism
|
|
GO:0005739
mitochondrion
|
ISS
GO_REF:0000024 |
ACCEPT |
Summary: Sequence-similarity transfer of mitochondrial localization from the rat ortholog (P13264). Correct core location; redundant with experimental evidence.
|
|
GO:0005739
mitochondrion
|
EXP
PMID:22228304 Mitochondrial localization and structure-based phosphate act... |
ACCEPT |
Summary: Experimental demonstration that GAC is mitochondrial (subcellular-localization analysis). Directly supports the core mitochondrial localization. Accepted.
Supporting Evidence:
PMID:22228304
GAC is distinctly mitochondrial
|
|
GO:0005759
mitochondrial matrix
|
ISS
GO_REF:0000024 |
ACCEPT |
Summary: Sequence-similarity transfer of mitochondrial matrix localization from the rat ortholog. Consistent with the mature matrix-resident chains; accepted as the specific compartment.
Supporting Evidence:
file:human/GLS/GLS-uniprot.txt
Mitochondrion matrix {ECO:0000250|UniProtKB:P13264}.
|
|
GO:0005759
mitochondrial matrix
|
TAS
Reactome:R-HSA-70609 |
ACCEPT |
Summary: Reactome traceable assertion placing the glutaminase reaction in the mitochondrial matrix. Consistent with UniProt; accepted as the specific compartment of catalysis.
|
|
GO:0005739
mitochondrion
|
HTP
PMID:34800366 Quantitative high-confidence human mitochondrial proteome an... |
ACCEPT |
Summary: High-throughput mitochondrial proteomics detection of GLS. Consistent with the established mitochondrial localization; accepted (corroborating, non-core relative to the direct localization studies).
|
|
GO:0090461
intracellular glutamate homeostasis
|
IMP
PMID:30239721 GLS hyperactivity causes glutamate excess, infantile catarac... |
ACCEPT |
Summary: Supported by the gain-of-function Ser482Cys study: hyperactive GLS raises glutamate and lowers glutamine in patient cells, and inhibiting GLS reverses the phenotype, directly implicating GLS in setting intracellular glutamate levels. Accepted as a physiological process downstream of the core catalytic function.
Supporting Evidence:
PMID:30239721
increased glutamate and decreased glutamine
concentrations were measured in urine and fibroblasts
|
|
GO:0005515
protein binding
|
IPI
PMID:16899818 Brain-specific BNIP-2-homology protein Caytaxin relocalises ... |
MARK AS OVER ANNOTATED |
Summary: IPI capturing the direct interaction with ATCAY/Caytaxin (Q86WG3), a brain-specific regulator that relocalizes GLS and inhibits its activity. The interaction is real and biologically meaningful, but bare 'protein binding' is uninformative as a molecular function. Retained as evidence of the ATCAY interaction but flagged as over-annotation; the regulatory biology is captured in the notes.
Supporting Evidence:
PMID:16899818
binding studies showed that they interact with each other
directly
|
|
GO:0005739
mitochondrion
|
IDA
PMID:16899818 Brain-specific BNIP-2-homology protein Caytaxin relocalises ... |
ACCEPT |
Summary: Direct localization of KGA to mitochondria (baseline, before ATCAY-induced relocalization to neurite terminals). Supports the core mitochondrial location. Accepted.
Supporting Evidence:
PMID:16899818
relocalised
KGA from the mitochondria to neurite terminals
|
|
GO:0004359
glutaminase activity
|
IDA
PMID:22049910 Full-length human glutaminase in complex with an allosteric ... |
ACCEPT |
Summary: Direct assay of glutaminase activity on full-length human GLS/GAC (kinetics; KM for glutamine reported in UniProt). Definitive support for the core molecular function. Accepted.
Supporting Evidence:
PMID:22049910
Glutaminase (GLS1/2) catalyzes the conversion of L-glutamine to L-glutamate and
ammonia.
|
|
GO:0006543
L-glutamine catabolic process
|
IDA
PMID:22049910 Full-length human glutaminase in complex with an allosteric ... |
ACCEPT |
Summary: Direct evidence that GLS catalyzes the committed catabolic step for glutamine (glutamine -> glutamate + ammonia). Core biological process. Accepted.
Supporting Evidence:
PMID:22049910
Glutaminase (GLS1/2) catalyzes the conversion of L-glutamine to L-glutamate and
ammonia.
|
|
GO:0051289
protein homotetramerization
|
IDA
PMID:22049910 Full-length human glutaminase in complex with an allosteric ... |
KEEP AS NON CORE |
Summary: Direct structural evidence for the GAC homotetramer (full-length crystal structure; BPTES binds at the tetramer interface). This is a genuine quaternary-structure property that underlies phosphate activation, but it is not the enzyme's core pathway function. Keep as non-core.
Supporting Evidence:
PMID:22049910
Two BPTES molecules bind at an interface region of the GAC
tetramer
|
|
GO:0097054
L-glutamate biosynthetic process
|
IDA
PMID:22049910 Full-length human glutaminase in complex with an allosteric ... |
ACCEPT |
Summary: Direct evidence that GLS produces L-glutamate from glutamine. This is the product side of the glutaminase reaction and is a legitimate core BP (glutamate biosynthesis via glutamine hydrolysis). Accepted.
Supporting Evidence:
PMID:22049910
Glutaminase (GLS1/2) catalyzes the conversion of L-glutamine to L-glutamate and
ammonia.
|
|
GO:0097054
L-glutamate biosynthetic process
|
TAS
PMID:21757002 The nuclear receptor FXR regulates hepatic transport and met... |
ACCEPT |
Summary: Traceable assertion (FXR/hepatic glutamine-glutamate metabolism review context) that glutaminase generates glutamate. Consistent with the core function; the cited paper is about FXR regulation of hepatic glutamine/glutamate metabolism and only contextually establishes GLS's role. Accepted as corroborating (non-core relative to the direct enzymology).
|
|
GO:0004359
glutaminase activity
|
NAS
PMID:10719215 Isolation, characterization and expression of a human brain ... |
ACCEPT |
Summary: Non-traceable/author-stated glutaminase activity from the human brain glutaminase cDNA cloning paper (recombinant enzyme was active). Correct core MF; redundant with the experimental annotations.
Supporting Evidence:
PMID:10719215
express high levels of properly processed
and active glutaminase
|
|
GO:0005739
mitochondrion
|
NAS
PMID:10719215 Isolation, characterization and expression of a human brain ... |
ACCEPT |
Summary: Author-stated mitochondrial localization inferred from the N-terminal mitochondrial targeting signal in the human brain glutaminase cDNA. Correct core location; redundant with direct evidence.
Supporting Evidence:
PMID:10719215
N-terminal mitochondrial targeting signal
|
|
GO:0006543
L-glutamine catabolic process
|
NAS
PMID:10719215 Isolation, characterization and expression of a human brain ... |
ACCEPT |
Summary: Author-stated involvement in glutamine metabolism (the cloned enzyme catalyzes a key reaction in glutamine metabolism and neurotransmitter synthesis). Core BP; redundant with the IBA/IDA annotations.
Supporting Evidence:
PMID:10719215
a key reaction in the metabolism of glutamine and the synthesis of
important excitatory and inhibitory neurotransmitters
|
|
GO:0004359
glutaminase activity
|
NAS
PMID:11015561 Cloning and analysis of unique human glutaminase isoforms ge... |
ACCEPT |
Summary: Author-stated glutaminase activity from the isoform-cloning paper (hKGA/hGAC are active kidney-type glutaminases; hGAC has high glutaminase activity in breast cancer cells). Correct core MF; redundant with experimental annotations.
Supporting Evidence:
PMID:11015561
a high rate
of glutamine utilization and glutaminase activity
|
UniProt: O94925 (GLSK_HUMAN), "Glutaminase kidney isoform, mitochondrial"; gene GLS (syn. GLS1, KIAA0838); 669 aa precursor. HGNC:4331. EC 3.5.1.2.
GLS is the kidney-type / phosphate-activated glutaminase. Two catalytically active isoforms exist by alternative splicing: KGA (isoform 1, O94925-1) and GAC / Glutaminase C (isoform 3, O94925-3); a third splice product GAM (isoform 2, O94925-2) lacks catalytic activity.
- Catalytic reaction (UniProt CATALYTIC ACTIVITY): [file:human/GLS/GLS-uniprot.txt "Reaction=L-glutamine + H2O = L-glutamate + NH4(+)"]; EC=3.5.1.2; Rhea:RHEA:15889.
- FUNCTION (UniProt): [file:human/GLS/GLS-uniprot.txt "Catalyzes the first reaction in the primary pathway for the"] renal catabolism of glutamine; plays a role in maintaining acid-base homeostasis; regulates the levels of the neurotransmitter glutamate.
- Isoform 2 (GAM): [file:human/GLS/GLS-uniprot.txt "Lacks catalytic activity."]
- PMID:22049910
- PMID:24451979 — feeds glutamate into the TCA cycle (glutaminolysis/anaplerosis).
- PMID:11015561 and the catalytically inactive hGAM is muscle-specific.
Mitochondrion; the mature enzyme is generated from a ~74-kDa cytosolic precursor imported and processed by the mitochondrial-processing peptidase (MPP) to 68-/65-kDa matrix chains.
- [file:human/GLS/GLS-uniprot.txt "The 74-kDa cytosolic precursor is"] translocated into the mitochondria and processed... to yield the mature 68- and 65-kDa subunits.
- Matrix chains: [file:human/GLS/GLS-uniprot.txt "Mitochondrion matrix {ECO:0000250|UniProtKB:P13264}."]
- GAC is distinctly mitochondrial: PMID:22228304.
- Brain GA cDNA encodes a protein with an N-terminal mitochondrial targeting signal: PMID:10719215.
- KGA can be relocalised from mitochondria to neurite terminals by ATCAY/Caytaxin: PMID:16899818.
- The cytosol annotation (GO:0005829, IEA UniProtKB-SubCell) reflects the cytosolic precursor stage of isoform 1 before mitochondrial import ([file:human/GLS/GLS-uniprot.txt "Cytoplasm, cytosol"]); it is a real but non-core, transient localization.
id: O94925
gene_symbol: GLS
product_type: PROTEIN
status: INITIALIZED
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: >-
GLS (kidney-type glutaminase, also known as GLS1) is a mitochondrial,
phosphate-activated glutaminase (EC 3.5.1.2) that catalyzes the hydrolytic
deamidation of L-glutamine to L-glutamate plus ammonia, the first and
committed step of glutaminolysis. The gene produces two catalytically active
splice isoforms, KGA (isoform 1) and the shorter GAC/glutaminase C (isoform 3),
and a catalytically inactive muscle isoform GAM (isoform 2). The enzyme is
synthesized as a ~74-kDa cytosolic precursor that is imported into mitochondria
and processed by the mitochondrial-processing peptidase into mature 68- and
65-kDa chains that reside in the mitochondrial matrix. It assembles into
homotetramers (dimers of dimers), and phosphate-driven tetramerization is
coupled to catalytic activation; C-terminal ankyrin repeats modulate higher-order
assembly. The glutamate produced feeds the TCA cycle (via glutamate
dehydrogenase and transaminases to alpha-ketoglutarate) for energy and
anaplerosis. GLS is central to renal ammoniagenesis and acid-base homeostasis,
to the brain glutamate/glutamine cycle that supplies neurotransmitter glutamate,
and to the elevated glutamine metabolism of many proliferating cancers, where it
is an actively pursued drug target (allosteric inhibitors such as BPTES and
CB-839/telaglenastat). Loss-of-function GLS variants cause severe neonatal
developmental and epileptic encephalopathy and a global developmental
delay/ataxia syndrome, whereas a gain-of-function variant causes cataract with
glutamate excess and profound developmental delay.
alternative_products:
- name: 1 (KGA {ECO:0000303|PubMed:22228304,)
id: O94925-1
- name: 2 (GAM)
id: O94925-2
sequence_note: VSP_001765, VSP_001766
- name: 3 (Glutaminase C {ECO:0000303|PubMed:22228304}, GAC)
id: O94925-3
sequence_note: VSP_001767
existing_annotations:
- term:
id: GO:0004359
label: glutaminase activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: >-
Phylogenetically-inferred glutaminase activity. This is the well-established
core molecular function of GLS, confirmed directly by multiple experimental
structural-enzymology studies and by the UniProt catalytic-activity annotation
(EC 3.5.1.2, L-glutamine + H2O = L-glutamate + NH4+).
action: ACCEPT
supported_by:
- reference_id: file:human/GLS/GLS-uniprot.txt
supporting_text: "Reaction=L-glutamine + H2O = L-glutamate + NH4(+);"
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: >-
Phylogenetic inference that GLS is active in the mitochondrion. Correct: the
mature enzyme is a mitochondrial (matrix) protein. Accepted as a core location.
action: ACCEPT
supported_by:
- reference_id: PMID:22228304
supporting_text: "GAC is distinctly mitochondrial"
- term:
id: GO:0006543
label: L-glutamine catabolic process
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: >-
Phylogenetically-inferred involvement in glutamine catabolism. This is the
core biological process for GLS (glutaminolysis begins with glutamine
hydrolysis). Accepted; also supported directly by IDA (PMID:22049910).
action: ACCEPT
- term:
id: GO:0004359
label: glutaminase activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: enables
review:
summary: >-
Electronic assertion of glutaminase activity (multiple IEA methods, incl.
RHEA/EC/InterPro). Correct and redundant with the experimental annotations of
the same term. Accepted as core MF.
action: ACCEPT
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: >-
UniProt SubCell mapping to mitochondrion. Correct core location; redundant with
experimental mitochondrial annotations.
action: ACCEPT
- term:
id: GO:0005759
label: mitochondrial matrix
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: located_in
review:
summary: >-
Electronic assertion of mitochondrial matrix localization. Consistent with the
mature 68-/65-kDa chains being matrix proteins per UniProt. This is the specific
compartment within the mitochondrion; accepted.
action: ACCEPT
supported_by:
- reference_id: file:human/GLS/GLS-uniprot.txt
supporting_text: "Mitochondrion matrix {ECO:0000250|UniProtKB:P13264}."
- term:
id: GO:0005829
label: cytosol
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: >-
UniProt SubCell mapping to cytosol. This reflects the ~74-kDa cytosolic
precursor of isoform 1 before mitochondrial import, not a steady-state site of
catalysis. Real but transient/non-core; keep as non-core.
action: KEEP_AS_NON_CORE
supported_by:
- reference_id: file:human/GLS/GLS-uniprot.txt
supporting_text: "Cytoplasm, cytosol"
- term:
id: GO:0006520
label: amino acid metabolic process
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: >-
ARBA electronic annotation to the very general parent 'amino acid metabolic
process'. Not wrong, but far less informative than the specific L-glutamine
catabolic / L-glutamate biosynthetic terms that are directly supported. Keep as
a non-core general grouping term.
action: KEEP_AS_NON_CORE
- term:
id: GO:0006541
label: L-glutamine metabolic process
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: involved_in
review:
summary: >-
InterPro2GO electronic annotation to 'L-glutamine metabolic process', the parent
of the specific catabolic term. Correct but general; the specific child
GO:0006543 (L-glutamine catabolic process) is the appropriate core term and is
already annotated. Generalize/keep as non-core.
action: KEEP_AS_NON_CORE
- term:
id: GO:0006543
label: L-glutamine catabolic process
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
Ensembl-Compara electronic transfer of glutamine catabolic process. Correct core
BP; redundant with IBA and IDA annotations of the same term.
action: ACCEPT
- term:
id: GO:0051289
label: protein homotetramerization
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
Electronic transfer of protein homotetramerization. GLS does form homotetramers
(dimers of dimers), so this captures a real quaternary-structure property rather
than the enzyme's pathway function. Keep as non-core.
action: KEEP_AS_NON_CORE
- term:
id: GO:0097054
label: L-glutamate biosynthetic process
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
Electronic transfer of L-glutamate biosynthetic process. This is the product
side of the glutaminase reaction and is a legitimate core BP; redundant with the
IDA (PMID:22049910) and TAS (PMID:21757002) annotations of the same term.
action: ACCEPT
- term:
id: GO:0062133
label: negative regulation of L-glutamine biosynthetic process
evidence_type: IDA
original_reference_id: PMID:16899818
qualifier: involved_in
review:
summary: >-
Derived from the ATCAY/Caytaxin study (PMID:16899818). That paper shows that
Caytaxin (ATCAY) binds and inhibits KGA and thereby lowers glutamate; it does
not show that GLS itself negatively regulates glutamine biosynthesis. GLS
degrades glutamine (catabolism) rather than regulating its synthesis, so this
process term is a poor fit for GLS's own function. As an experimental IDA it is
retained but flagged as an over-annotation.
action: MARK_AS_OVER_ANNOTATED
supported_by:
- reference_id: PMID:16899818
supporting_text: "It also reduced the steady-state \nlevels of glutamate by inhibiting KGA enzyme activity."
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IDA
original_reference_id: GO_REF:0000052
qualifier: located_in
review:
summary: >-
HPA immunofluorescence localization to mitochondrion. Consistent with all other
evidence; accepted as core location.
action: ACCEPT
- term:
id: GO:0004359
label: glutaminase activity
evidence_type: EXP
original_reference_id: PMID:22538822
qualifier: enables
review:
summary: >-
Experimental glutaminase activity from the KGA structure/enzymology study
(crystal structures with glutamate/glutamine substrate, catalytic-activity
assays, active-site mutagenesis). Directly establishes the core molecular
function. Accepted.
action: ACCEPT
supported_by:
- reference_id: PMID:22538822
supporting_text: "human kidney-type glutaminase isoform (KGA) is becoming an \nattractive target"
- term:
id: GO:0004359
label: glutaminase activity
evidence_type: EXP
original_reference_id: PMID:24451979
qualifier: enables
review:
summary: >-
Experimental glutaminase activity confirmed by the cKGA active-site inhibition
study: glutaminase assays plus active-site mutagenesis (Ser286, Lys289, Tyr249,
Tyr466) that reduce activity. Directly supports the core MF. Accepted.
action: ACCEPT
supported_by:
- reference_id: PMID:24451979
supporting_text: "Glutaminase controls the first step in the glutaminolysis pathway by converting glutamine (Gln) to glutamate (Glu)"
- term:
id: GO:0004359
label: glutaminase activity
evidence_type: EXP
original_reference_id: PMID:26988803
qualifier: enables
review:
summary: >-
Experimental glutaminase activity from the glutaminase-inhibitor design study,
which assayed catalytic activity and solved KGA/GAC structures. Supports the
core MF. Accepted.
action: ACCEPT
- term:
id: GO:0004359
label: glutaminase activity
evidence_type: EXP
original_reference_id: PMID:28526749
qualifier: enables
review:
summary: >-
Experimental glutaminase activity from the glutaminase evolution/structure study
(full-length KGA crystal structure with catalytic-activity determination).
Supports the core MF. Accepted.
action: ACCEPT
- term:
id: GO:0004359
label: glutaminase activity
evidence_type: EXP
original_reference_id: PMID:29317493
qualifier: enables
review:
summary: >-
Experimental glutaminase activity from the GAC allosteric-inhibitor study, which
measured enzymatic activity of recombinant GAC. Supports the core MF. Accepted.
action: ACCEPT
supported_by:
- reference_id: PMID:29317493
supporting_text: "glutaminase C \n(GAC), which catalyzes the first step in glutamine metabolism"
- term:
id: GO:0005739
label: mitochondrion
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: located_in
review:
summary: >-
Sequence-similarity transfer of mitochondrial localization from the rat ortholog
(P13264). Correct core location; redundant with experimental evidence.
action: ACCEPT
- term:
id: GO:0005739
label: mitochondrion
evidence_type: EXP
original_reference_id: PMID:22228304
qualifier: located_in
review:
summary: >-
Experimental demonstration that GAC is mitochondrial (subcellular-localization
analysis). Directly supports the core mitochondrial localization. Accepted.
action: ACCEPT
supported_by:
- reference_id: PMID:22228304
supporting_text: "GAC is distinctly mitochondrial"
- term:
id: GO:0005759
label: mitochondrial matrix
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: located_in
review:
summary: >-
Sequence-similarity transfer of mitochondrial matrix localization from the rat
ortholog. Consistent with the mature matrix-resident chains; accepted as the
specific compartment.
action: ACCEPT
supported_by:
- reference_id: file:human/GLS/GLS-uniprot.txt
supporting_text: "Mitochondrion matrix {ECO:0000250|UniProtKB:P13264}."
- term:
id: GO:0005759
label: mitochondrial matrix
evidence_type: TAS
original_reference_id: Reactome:R-HSA-70609
qualifier: located_in
review:
summary: >-
Reactome traceable assertion placing the glutaminase reaction in the
mitochondrial matrix. Consistent with UniProt; accepted as the specific
compartment of catalysis.
action: ACCEPT
- term:
id: GO:0005739
label: mitochondrion
evidence_type: HTP
original_reference_id: PMID:34800366
qualifier: located_in
review:
summary: >-
High-throughput mitochondrial proteomics detection of GLS. Consistent with the
established mitochondrial localization; accepted (corroborating, non-core relative
to the direct localization studies).
action: ACCEPT
- term:
id: GO:0090461
label: intracellular glutamate homeostasis
evidence_type: IMP
original_reference_id: PMID:30239721
qualifier: involved_in
review:
summary: >-
Supported by the gain-of-function Ser482Cys study: hyperactive GLS raises
glutamate and lowers glutamine in patient cells, and inhibiting GLS reverses the
phenotype, directly implicating GLS in setting intracellular glutamate levels.
Accepted as a physiological process downstream of the core catalytic function.
action: ACCEPT
supported_by:
- reference_id: PMID:30239721
supporting_text: "increased glutamate and decreased glutamine \nconcentrations were measured in urine and fibroblasts"
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16899818
qualifier: enables
review:
summary: >-
IPI capturing the direct interaction with ATCAY/Caytaxin (Q86WG3), a
brain-specific regulator that relocalizes GLS and inhibits its activity. The
interaction is real and biologically meaningful, but bare 'protein binding' is
uninformative as a molecular function. Retained as evidence of the ATCAY
interaction but flagged as over-annotation; the regulatory biology is captured in
the notes.
action: MARK_AS_OVER_ANNOTATED
supported_by:
- reference_id: PMID:16899818
supporting_text: "binding studies showed that they interact with each other \ndirectly"
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IDA
original_reference_id: PMID:16899818
qualifier: located_in
review:
summary: >-
Direct localization of KGA to mitochondria (baseline, before ATCAY-induced
relocalization to neurite terminals). Supports the core mitochondrial location.
Accepted.
action: ACCEPT
supported_by:
- reference_id: PMID:16899818
supporting_text: "relocalised \nKGA from the mitochondria to neurite terminals"
- term:
id: GO:0004359
label: glutaminase activity
evidence_type: IDA
original_reference_id: PMID:22049910
qualifier: enables
review:
summary: >-
Direct assay of glutaminase activity on full-length human GLS/GAC (kinetics; KM
for glutamine reported in UniProt). Definitive support for the core molecular
function. Accepted.
action: ACCEPT
supported_by:
- reference_id: PMID:22049910
supporting_text: "Glutaminase (GLS1/2) catalyzes the conversion of L-glutamine to L-glutamate and \nammonia."
- term:
id: GO:0006543
label: L-glutamine catabolic process
evidence_type: IDA
original_reference_id: PMID:22049910
qualifier: involved_in
review:
summary: >-
Direct evidence that GLS catalyzes the committed catabolic step for glutamine
(glutamine -> glutamate + ammonia). Core biological process. Accepted.
action: ACCEPT
supported_by:
- reference_id: PMID:22049910
supporting_text: "Glutaminase (GLS1/2) catalyzes the conversion of L-glutamine to L-glutamate and \nammonia."
- term:
id: GO:0051289
label: protein homotetramerization
evidence_type: IDA
original_reference_id: PMID:22049910
qualifier: involved_in
review:
summary: >-
Direct structural evidence for the GAC homotetramer (full-length crystal
structure; BPTES binds at the tetramer interface). This is a genuine
quaternary-structure property that underlies phosphate activation, but it is not
the enzyme's core pathway function. Keep as non-core.
action: KEEP_AS_NON_CORE
supported_by:
- reference_id: PMID:22049910
supporting_text: "Two BPTES molecules bind at an interface region of the GAC \ntetramer"
- term:
id: GO:0097054
label: L-glutamate biosynthetic process
evidence_type: IDA
original_reference_id: PMID:22049910
qualifier: involved_in
review:
summary: >-
Direct evidence that GLS produces L-glutamate from glutamine. This is the product
side of the glutaminase reaction and is a legitimate core BP (glutamate
biosynthesis via glutamine hydrolysis). Accepted.
action: ACCEPT
supported_by:
- reference_id: PMID:22049910
supporting_text: "Glutaminase (GLS1/2) catalyzes the conversion of L-glutamine to L-glutamate and \nammonia."
- term:
id: GO:0097054
label: L-glutamate biosynthetic process
evidence_type: TAS
original_reference_id: PMID:21757002
qualifier: involved_in
review:
summary: >-
Traceable assertion (FXR/hepatic glutamine-glutamate metabolism review context)
that glutaminase generates glutamate. Consistent with the core function; the
cited paper is about FXR regulation of hepatic glutamine/glutamate metabolism and
only contextually establishes GLS's role. Accepted as corroborating (non-core
relative to the direct enzymology).
action: ACCEPT
- term:
id: GO:0004359
label: glutaminase activity
evidence_type: NAS
original_reference_id: PMID:10719215
qualifier: enables
review:
summary: >-
Non-traceable/author-stated glutaminase activity from the human brain
glutaminase cDNA cloning paper (recombinant enzyme was active). Correct core MF;
redundant with the experimental annotations.
action: ACCEPT
supported_by:
- reference_id: PMID:10719215
supporting_text: "express high levels of properly processed \nand active glutaminase"
- term:
id: GO:0005739
label: mitochondrion
evidence_type: NAS
original_reference_id: PMID:10719215
qualifier: located_in
review:
summary: >-
Author-stated mitochondrial localization inferred from the N-terminal
mitochondrial targeting signal in the human brain glutaminase cDNA. Correct core
location; redundant with direct evidence.
action: ACCEPT
supported_by:
- reference_id: PMID:10719215
supporting_text: "N-terminal mitochondrial targeting signal"
- term:
id: GO:0006543
label: L-glutamine catabolic process
evidence_type: NAS
original_reference_id: PMID:10719215
qualifier: involved_in
review:
summary: >-
Author-stated involvement in glutamine metabolism (the cloned enzyme catalyzes a
key reaction in glutamine metabolism and neurotransmitter synthesis). Core BP;
redundant with the IBA/IDA annotations.
action: ACCEPT
supported_by:
- reference_id: PMID:10719215
supporting_text: "a key reaction in the metabolism of glutamine and the synthesis of \nimportant excitatory and inhibitory neurotransmitters"
- term:
id: GO:0004359
label: glutaminase activity
evidence_type: NAS
original_reference_id: PMID:11015561
qualifier: enables
review:
summary: >-
Author-stated glutaminase activity from the isoform-cloning paper (hKGA/hGAC are
active kidney-type glutaminases; hGAC has high glutaminase activity in breast
cancer cells). Correct core MF; redundant with experimental annotations.
action: ACCEPT
supported_by:
- reference_id: PMID:11015561
supporting_text: "a high rate \nof glutamine utilization and glutaminase activity"
core_functions:
- description: >-
Hydrolyzes L-glutamine to L-glutamate and ammonia in the mitochondrial matrix
(glutaminase activity, EC 3.5.1.2), the first, committed step of glutaminolysis
that supplies glutamate for TCA-cycle anaplerosis, renal ammoniagenesis, and the
neuronal glutamate/glutamine cycle.
molecular_function:
id: GO:0004359
label: glutaminase activity
directly_involved_in:
- id: GO:0006543
label: L-glutamine catabolic process
- id: GO:0097054
label: L-glutamate biosynthetic process
locations:
- id: GO:0005759
label: mitochondrial matrix
supported_by:
- reference_id: file:human/GLS/GLS-uniprot.txt
supporting_text: "Reaction=L-glutamine + H2O = L-glutamate + NH4(+);"
- reference_id: PMID:22049910
supporting_text: "Glutaminase (GLS1/2) catalyzes the conversion of L-glutamine to L-glutamate and \nammonia."
- reference_id: PMID:24451979
supporting_text: "Glutaminase controls the first step in the glutaminolysis pathway by converting glutamine (Gln) to glutamate (Glu)"
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO
terms
findings: []
- id: GO_REF:0000024
title: Manual transfer of experimentally-verified manual GO annotation data to orthologs
by curator judgment of sequence similarity
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location
vocabulary mapping, accompanied by conservative changes to GO terms applied by
UniProt
findings: []
- id: GO_REF:0000052
title: Gene Ontology annotation based on curation of immunofluorescence data
findings: []
- id: GO_REF:0000107
title: Automatic transfer of experimentally verified manual GO annotation data to
orthologs using Ensembl Compara
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning models
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:10719215
title: Isolation, characterization and expression of a human brain mitochondrial
glutaminase cDNA.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Cloning of the human brain mitochondrial glutaminase cDNA; recombinant enzyme is
active and carries an N-terminal mitochondrial targeting signal. Abstract-only in
cache; supports glutaminase activity and mitochondrial localization.
- id: PMID:11015561
title: Cloning and analysis of unique human glutaminase isoforms generated by tissue-specific
alternative splicing.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Defines the human KGA, GAC and GAM splice isoforms and their tissue expression;
GAC is the high-glutaminase-activity isoform in breast cancer cells. GAM (isoform
2) lacks catalytic activity per UniProt.
- id: PMID:16899818
title: Brain-specific BNIP-2-homology protein Caytaxin relocalises glutaminase to
neurite terminals and reduces glutamate levels.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Establishes the direct ATCAY (Caytaxin, Q86WG3)-KGA interaction and shows ATCAY
inhibits KGA activity and lowers glutamate. Supports the protein-binding IPI and
the mitochondrial IDA; the derived GO:0062133 process term describes ATCAY's
regulatory effect rather than a GLS function (flagged as over-annotation).
- id: PMID:21757002
title: The nuclear receptor FXR regulates hepatic transport and metabolism of glutamine
and glutamate.
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: >-
Primarily about FXR regulation of hepatic glutamine/glutamate metabolism; only
contextually supports glutaminase producing glutamate. Basis for a TAS annotation
of L-glutamate biosynthetic process.
- id: PMID:22049910
title: Full-length human glutaminase in complex with an allosteric inhibitor.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
First full-length human GAC crystal structure with kinetic assays; directly
supports glutaminase activity, glutamine catabolism/glutamate biosynthesis, and
the homotetramer.
- id: PMID:22228304
title: Mitochondrial localization and structure-based phosphate activation mechanism
of Glutaminase C with implications for cancer metabolism.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Demonstrates GAC is mitochondrial and describes the phosphate/tetramerization
activation mechanism relevant to cancer metabolism. Supports the mitochondrial
localization annotation.
- id: PMID:22538822
title: Structural basis for the allosteric inhibitory mechanism of human kidney-type
glutaminase (KGA) and its regulation by Raf-Mek-Erk signaling in cancer cell metabolism.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
KGA crystal structures with glutamate/glutamine, catalytic-activity assays,
active-site mutagenesis, and RAF1/MAP2K2 interaction; supports the EXP glutaminase
activity annotation and the homotetramer/regulation biology.
- id: PMID:24451979
title: Structural basis for the active site inhibition mechanism of human kidney-type
glutaminase (KGA).
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Full text available; cKGA:DON structure and active-site mutagenesis (Ser286,
Lys289, Tyr249, Tyr466) confirm catalytic residues and glutaminase activity.
- id: PMID:26988803
title: Design and evaluation of novel glutaminase inhibitors.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Glutaminase-inhibitor design study with KGA/GAC structures and activity assays;
supports the EXP glutaminase activity annotation.
- id: PMID:28526749
title: The origin and evolution of human glutaminases and their atypical C-terminal
ankyrin repeats.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Full-length KGA structure and evolutionary/ANK-repeat analysis; determines
catalytic activity and subunit structure. Supports the EXP glutaminase activity
annotation and the homotetramer/filament biology.
- id: PMID:29317493
title: Characterization of the interactions of potent allosteric inhibitors with
glutaminase C, a key enzyme in cancer cell glutamine metabolism.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
GAC allosteric-inhibitor (UPGL00004/CB-839/BPTES) structural and enzymatic
characterization; supports the EXP glutaminase activity annotation.
- id: PMID:30239721
title: GLS hyperactivity causes glutamate excess, infantile cataract and profound
developmental delay.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Gain-of-function Ser482Cys GLS variant (CASGID) causing glutamate excess;
functional basis for the intracellular glutamate homeostasis IMP annotation.
- id: PMID:34800366
title: Quantitative high-confidence human mitochondrial proteome and its dynamics
in cellular context.
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: >-
High-throughput mitochondrial proteome study; corroborates GLS mitochondrial
localization (HTP evidence).
- id: Reactome:R-HSA-70609
title: glutamine + H2O => glutamate + NH4+ (GLS)
findings: []