GSK3B encodes glycogen synthase kinase-3 beta, a constitutively active, ATP-dependent serine/threonine protein kinase regulated by inhibitory Ser-9 and activating Tyr-216 phosphorylation. GSK3B phosphorylates primed and unprimed protein substrates across glucose/glycogen metabolism, canonical Wnt/beta-catenin signaling, transcription-factor regulation, protein ubiquitination/degradation, autophagy, apoptosis, neuronal polarity, microtubule regulation, and tau biology. Core disease-relevant functions include tau-protein kinase activity that reduces tau microtubule binding, negative regulation of canonical Wnt signaling through the beta-catenin destruction complex, and insulin-linked negative control of glycogen synthesis.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
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GO:0030424
axon
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IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: axon is retained as a non-core cellular-component/localization annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0030424 (axon), the IBA annotation with qualifier is_active_in from GO_REF:0000033 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0030425
dendrite
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IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: dendrite is retained as a non-core cellular-component/localization annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0030425 (dendrite), the IBA annotation with qualifier is_active_in from GO_REF:0000033 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0005634
nucleus
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IBA
GO_REF:0000033 |
ACCEPT |
Summary: nucleus is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005634 (nucleus), the IBA annotation with qualifier is_active_in from GO_REF:0000033 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005737
cytoplasm
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: cytoplasm is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005737 (cytoplasm), the IBA annotation with qualifier is_active_in from GO_REF:0000033 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
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IBA
GO_REF:0000033 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the IBA annotation with qualifier is_active_in from GO_REF:0000033 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0030154
cell differentiation
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IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: cell differentiation is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0030154 (cell differentiation), the IBA annotation with qualifier involved_in from GO_REF:0000033 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0050321
tau-protein kinase activity
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IBA
GO_REF:0000033 |
ACCEPT |
Summary: tau-protein kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0050321 (tau-protein kinase activity), the IBA annotation with qualifier enables from GO_REF:0000033 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0090090
negative regulation of canonical Wnt signaling pathway
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IBA
GO_REF:0000033 |
ACCEPT |
Summary: negative regulation of canonical Wnt signaling pathway is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0090090 (negative regulation of canonical Wnt signaling pathway), the IBA annotation with qualifier involved_in from GO_REF:0000033 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0032007
negative regulation of TOR signaling
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IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: negative regulation of TOR signaling is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0032007 (negative regulation of TOR signaling), the IBA annotation with qualifier involved_in from GO_REF:0000033 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0010508
positive regulation of autophagy
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IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: positive regulation of autophagy is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0010508 (positive regulation of autophagy), the IBA annotation with qualifier involved_in from GO_REF:0000033 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0043525
positive regulation of neuron apoptotic process
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IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: positive regulation of neuron apoptotic process is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0043525 (positive regulation of neuron apoptotic process), the IBA annotation with qualifier involved_in from GO_REF:0000033 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0032436
positive regulation of proteasomal ubiquitin-dependent protein catabolic process
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IBA
GO_REF:0000033 |
ACCEPT |
Summary: positive regulation of proteasomal ubiquitin-dependent protein catabolic process is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein catabolic process), the IBA annotation with qualifier involved_in from GO_REF:0000033 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0070507
regulation of microtubule cytoskeleton organization
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: regulation of microtubule cytoskeleton organization is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0070507 (regulation of microtubule cytoskeleton organization), the IBA annotation with qualifier involved_in from GO_REF:0000033 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0010975
regulation of neuron projection development
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IBA
GO_REF:0000033 |
ACCEPT |
Summary: regulation of neuron projection development is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0010975 (regulation of neuron projection development), the IBA annotation with qualifier involved_in from GO_REF:0000033 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0098978
glutamatergic synapse
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IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: glutamatergic synapse is retained as a non-core cellular-component/localization annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0098978 (glutamatergic synapse), the IBA annotation with qualifier is_active_in from GO_REF:0000033 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0008286
insulin receptor signaling pathway
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IBA
GO_REF:0000033 |
ACCEPT |
Summary: insulin receptor signaling pathway is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0008286 (insulin receptor signaling pathway), the IBA annotation with qualifier involved_in from GO_REF:0000033 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0008013
beta-catenin binding
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IBA
GO_REF:0000033 |
ACCEPT |
Summary: beta-catenin binding is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0008013 (beta-catenin binding), the IBA annotation with qualifier enables from GO_REF:0000033 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0030877
beta-catenin destruction complex
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IBA
GO_REF:0000033 |
ACCEPT |
Summary: beta-catenin destruction complex is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0030877 (beta-catenin destruction complex), the IBA annotation with qualifier part_of from GO_REF:0000033 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004672
protein kinase activity
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IEA
GO_REF:0000120 |
MODIFY |
Summary: protein kinase activity is directionally related to GSK3B biology but is not the best curation target; protein serine/threonine kinase activity better captures the specific supported function or process.
Reason: For GO:0004672 (protein kinase activity), the IEA annotation with qualifier enables from GO_REF:0000120 supports a relationship to GSK3B, but the current term is less precise than protein serine/threonine kinase activity for the evidence and for the synthesized core/non-core role of GSK3B. The MODIFY action preserves the biological intent while pointing curators to the more informative GO term.
Proposed replacements:
protein serine/threonine kinase activity
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GO:0004674
protein serine/threonine kinase activity
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IEA
GO_REF:0000120 |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the IEA annotation with qualifier enables from GO_REF:0000120 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005524
ATP binding
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IEA
GO_REF:0000002 |
ACCEPT |
Summary: ATP binding is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005524 (ATP binding), the IEA annotation with qualifier enables from GO_REF:0000002 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005634
nucleus
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IEA
GO_REF:0000120 |
ACCEPT |
Summary: nucleus is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005634 (nucleus), the IEA annotation with qualifier located_in from GO_REF:0000120 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005737
cytoplasm
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: cytoplasm is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005737 (cytoplasm), the IEA annotation with qualifier located_in from GO_REF:0000044 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005886
plasma membrane
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IEA
GO_REF:0000044 |
ACCEPT |
Summary: plasma membrane is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005886 (plasma membrane), the IEA annotation with qualifier located_in from GO_REF:0000044 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0009968
negative regulation of signal transduction
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IEA
GO_REF:0000117 |
MARK AS OVER ANNOTATED |
Summary: negative regulation of signal transduction is marked over-annotated for GSK3B because this biological-process term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0009968 (negative regulation of signal transduction), the IEA annotation with qualifier involved_in from GO_REF:0000117 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
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GO:0019082
viral protein processing
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IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: viral protein processing is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0019082 (viral protein processing), the IEA annotation with qualifier involved_in from GO_REF:0000117 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0031398
positive regulation of protein ubiquitination
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IEA
GO_REF:0000117 |
ACCEPT |
Summary: positive regulation of protein ubiquitination is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0031398 (positive regulation of protein ubiquitination), the IEA annotation with qualifier involved_in from GO_REF:0000117 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0032436
positive regulation of proteasomal ubiquitin-dependent protein catabolic process
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IEA
GO_REF:0000117 |
ACCEPT |
Summary: positive regulation of proteasomal ubiquitin-dependent protein catabolic process is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein catabolic process), the IEA annotation with qualifier involved_in from GO_REF:0000117 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0034236
protein kinase A catalytic subunit binding
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IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: protein kinase A catalytic subunit binding is retained as a non-core molecular-function annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0034236 (protein kinase A catalytic subunit binding), the IEA annotation with qualifier enables from GO_REF:0000117 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0050321
tau-protein kinase activity
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IEA
GO_REF:0000120 |
ACCEPT |
Summary: tau-protein kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0050321 (tau-protein kinase activity), the IEA annotation with qualifier enables from GO_REF:0000120 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0098793
presynapse
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IEA
GO_REF:0000108 |
KEEP AS NON CORE |
Summary: presynapse is retained as a non-core cellular-component/localization annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0098793 (presynapse), the IEA annotation with qualifier located_in from GO_REF:0000108 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:2000077
negative regulation of type B pancreatic cell development
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IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: negative regulation of type B pancreatic cell development is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:2000077 (negative regulation of type B pancreatic cell development), the IEA annotation with qualifier involved_in from GO_REF:0000117 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0005515
protein binding
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IPI
PMID:10481074 A GSK3-binding peptide from FRAT1 selectively inhibits the G... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:10481074 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
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GO:0005515
protein binding
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IPI
PMID:11004522 Cloning and characterization of a novel human ninein protein... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:11004522 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:11035810 Phosphorylation and inactivation of glycogen synthase kinase... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:11035810 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:11738041 The structure of phosphorylated GSK-3beta complexed with a p... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:11738041 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:12421363 Axin negatively affects tau phosphorylation by glycogen synt... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:12421363 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:12434148 Crystal structure of an activated Akt/protein kinase B terna... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:12434148 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:14744935 Endoplasmic reticulum stress induces p53 cytoplasmic localiz... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:14744935 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:15147888 A novel ninein-interaction protein, CGI-99, blocks ninein ph... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:15147888 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:15752768 Characterization of two non-testis-specific CABYR variants t... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:15752768 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:16282323 Evidence that Ser87 of BimEL is phosphorylated by Akt and re... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:16282323 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:16365045 The low density lipoprotein receptor-related protein 6 inter... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:16365045 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:16890161 Caveolin is necessary for Wnt-3a-dependent internalization o... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:16890161 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:17078951 PKA modulates GSK-3beta- and cdk5-catalyzed phosphorylation ... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:17078951 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:17139249 GSK-3beta-regulated interaction of BICD with dynein is invol... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:17139249 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:17317006 14-3-3zeta facilitates GSK3beta-catalyzed tau phosphorylatio... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:17317006 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:17318191 Bcr-Abl stabilizes beta-catenin in chronic myeloid leukemia ... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:17318191 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:17510365 Wilms tumor suppressor WTX negatively regulates WNT/beta-cat... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:17510365 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:17601533 Two functionally distinct Axin-like proteins regulate canoni... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:17601533 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:18045539 Integrating patterning signals: Wnt/GSK3 regulates the durat... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:18045539 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:18505846 p53 stabilization in response to DNA damage requires Akt/PKB... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:18505846 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:18687691 Regulation of Akt/FOXO3a/GSK-3beta/AR signaling network by i... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:18687691 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:19131971 The Axin1 scaffold protein promotes formation of a degradati... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:19131971 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:19202075 Beta-arrestin links endothelin A receptor to beta-catenin si... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:19202075 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:19249679 Oncogenic function of ATDC in pancreatic cancer through Wnt ... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:19249679 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:19303846 Disrupted in schizophrenia 1 regulates neuronal progenitor p... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:19303846 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:19411070 Stabilization of snail by NF-kappaB is required for inflamma... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:19411070 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:19759537 Tankyrase inhibition stabilizes axin and antagonizes Wnt sig... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:19759537 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:20080667 Role of DAB2IP in modulating epithelial-to-mesenchymal trans... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:20080667 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:20368287 Interactome mapping of the phosphatidylinositol 3-kinase-mam... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:20368287 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:20389281 The SNAG domain of Snail1 functions as a molecular hook for ... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:20389281 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:20856200 Vimentin is a novel AKT1 target mediating motility and invas... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:20856200 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:21118991 The EDD E3 ubiquitin ligase ubiquitinates and up-regulates b... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:21118991 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:21217772 Glycogen synthase kinase-3Ξ² is a crucial mediator of signal-... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:21217772 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:21242974 Methylation by protein arginine methyltransferase 1 increase... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:21242974 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:21743491 Microsomal prostaglandin E synthase-1 promotes hepatocarcino... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:21743491 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:21900206 A directed protein interaction network for investigating int... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:21900206 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:21985244 Stimulatory effect of Ξ±-synuclein on the tau-phosphorylation... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:21985244 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:21988832 Toward an understanding of the protein interaction network o... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:21988832 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:22470507 Oncogenic function of DACT1 in colon cancer through the regu... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:22470507 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:22682247 Wnt signaling through inhibition of Ξ²-catenin degradation in... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:22682247 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:22699938 Kindlin 2 forms a transcriptional complex with Ξ²-catenin and... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:22699938 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:22773187 Dual functions of DP1 promote biphasic Wnt-on and Wnt-off st... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:22773187 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:23010592 NOK/STYK1 interacts with GSK-3Ξ² and mediates Ser9 phosphoryl... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:23010592 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:23455922 Interlaboratory reproducibility of large-scale human protein... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:23455922 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:23602568 The protein interaction landscape of the human CMGC kinase g... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:23602568 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:24165324 Leucine-rich repeat kinaseΒ 2 regulates tau phosphorylation t... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:24165324 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:24879152 Phosphorylation of NBR1 by GSK3 modulates protein aggregatio... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:24879152 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:24976009 YAP/TAZ incorporation in the Ξ²-catenin destruction complex o... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:24976009 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:25241761 Using an in situ proximity ligation assay to systematically ... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:25241761 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:26496610 A human interactome in three quantitative dimensions organiz... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:26496610 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:26618561 Direct High Affinity Interaction between AΞ²42 and GSK3Ξ± Stim... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:26618561 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:27601169 Vitamin D receptor is a novel transcriptional regulator for ... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:27601169 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:29568061 An AP-MS- and BioID-compatible MAC-tag enables comprehensive... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:29568061 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:31640277 GSKIP-Mediated Anchoring Increases Phosphorylation of Tau by... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:31640277 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:32707033 Kinase Interaction Network Expands Functional and Disease Ro... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:32707033 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:33248025 Phosphoregulation of Phase Separation by the SARS-CoV-2Β N Pr... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:33248025 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:33961781 Dual proteome-scale networks reveal cell-specific remodeling... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:33961781 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:34232536 Interactomes of SARS-CoV-2 and human coronaviruses reveal ho... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:34232536 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:35063084 Tau interactome maps synaptic and mitochondrial processes as... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:35063084 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:35271311 OpenCell: Endogenous tagging for the cartography of human ce... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:35271311 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:35512704 Systematic discovery of mutation-directed neo-protein-protei... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:35512704 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
|
|
GO:0005515
protein binding
|
IPI
PMID:8638126 Binding of GSK3beta to the APC-beta-catenin complex and regu... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:8638126 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
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GO:0005829
cytosol
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IEA
GO_REF:0000107 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the IEA annotation with qualifier located_in from GO_REF:0000107 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0007127
meiosis I
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: meiosis I is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0007127 (meiosis I), the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0007623
circadian rhythm
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: circadian rhythm is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0007623 (circadian rhythm), the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0008013
beta-catenin binding
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IEA
GO_REF:0000107 |
ACCEPT |
Summary: beta-catenin binding is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0008013 (beta-catenin binding), the IEA annotation with qualifier enables from GO_REF:0000107 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0008286
insulin receptor signaling pathway
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IEA
GO_REF:0000107 |
ACCEPT |
Summary: insulin receptor signaling pathway is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0008286 (insulin receptor signaling pathway), the IEA annotation with qualifier involved_in from GO_REF:0000107 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0010508
positive regulation of autophagy
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: positive regulation of autophagy is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0010508 (positive regulation of autophagy), the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0010628
positive regulation of gene expression
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: positive regulation of gene expression is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0010628 (positive regulation of gene expression), the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0010954
positive regulation of protein processing
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: positive regulation of protein processing is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0010954 (positive regulation of protein processing), the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0014069
postsynaptic density
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: postsynaptic density is retained as a non-core cellular-component/localization annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0014069 (postsynaptic density), the IEA annotation with qualifier located_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0019901
protein kinase binding
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: protein kinase binding is retained as a non-core molecular-function annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0019901 (protein kinase binding), the IEA annotation with qualifier enables from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0030426
growth cone
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: growth cone is retained as a non-core cellular-component/localization annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0030426 (growth cone), the IEA annotation with qualifier located_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0030877
beta-catenin destruction complex
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IEA
GO_REF:0000120 |
ACCEPT |
Summary: beta-catenin destruction complex is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0030877 (beta-catenin destruction complex), the IEA annotation with qualifier part_of from GO_REF:0000120 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0031663
lipopolysaccharide-mediated signaling pathway
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: lipopolysaccharide-mediated signaling pathway is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0031663 (lipopolysaccharide-mediated signaling pathway), the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0032007
negative regulation of TOR signaling
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: negative regulation of TOR signaling is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0032007 (negative regulation of TOR signaling), the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0032481
positive regulation of type I interferon production
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: positive regulation of type I interferon production is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0032481 (positive regulation of type I interferon production), the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0032886
regulation of microtubule-based process
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IEA
GO_REF:0000107 |
ACCEPT |
Summary: regulation of microtubule-based process is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0032886 (regulation of microtubule-based process), the IEA annotation with qualifier involved_in from GO_REF:0000107 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0036016
cellular response to interleukin-3
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: cellular response to interleukin-3 is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0036016 (cellular response to interleukin-3), the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0042752
regulation of circadian rhythm
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: regulation of circadian rhythm is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0042752 (regulation of circadian rhythm), the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0042981
regulation of apoptotic process
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: regulation of apoptotic process is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0042981 (regulation of apoptotic process), the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0043025
neuronal cell body
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: neuronal cell body is retained as a non-core cellular-component/localization annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0043025 (neuronal cell body), the IEA annotation with qualifier located_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0043198
dendritic shaft
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: dendritic shaft is retained as a non-core cellular-component/localization annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0043198 (dendritic shaft), the IEA annotation with qualifier located_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0043491
phosphatidylinositol 3-kinase/protein kinase B signal transduction
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: phosphatidylinositol 3-kinase/protein kinase B signal transduction is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0043491 (phosphatidylinositol 3-kinase/protein kinase B signal transduction), the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0044297
cell body
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: cell body is retained as a non-core cellular-component/localization annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0044297 (cell body), the IEA annotation with qualifier located_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0045719
negative regulation of glycogen biosynthetic process
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IEA
GO_REF:0000120 |
ACCEPT |
Summary: negative regulation of glycogen biosynthetic process is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0045719 (negative regulation of glycogen biosynthetic process), the IEA annotation with qualifier involved_in from GO_REF:0000120 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0045724
positive regulation of cilium assembly
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: positive regulation of cilium assembly is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0045724 (positive regulation of cilium assembly), the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0045879
negative regulation of smoothened signaling pathway
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: negative regulation of smoothened signaling pathway is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0045879 (negative regulation of smoothened signaling pathway), the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0048471
perinuclear region of cytoplasm
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: perinuclear region of cytoplasm is retained as a non-core cellular-component/localization annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0048471 (perinuclear region of cytoplasm), the IEA annotation with qualifier located_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0070059
intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0070059 (intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress), the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0070840
dynein complex binding
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: dynein complex binding is retained as a non-core molecular-function annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0070840 (dynein complex binding), the IEA annotation with qualifier enables from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0071385
cellular response to glucocorticoid stimulus
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: cellular response to glucocorticoid stimulus is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0071385 (cellular response to glucocorticoid stimulus), the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0072687
meiotic spindle
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: meiotic spindle is retained as a non-core cellular-component/localization annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0072687 (meiotic spindle), the IEA annotation with qualifier is_active_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0090090
negative regulation of canonical Wnt signaling pathway
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IEA
GO_REF:0000107 |
ACCEPT |
Summary: negative regulation of canonical Wnt signaling pathway is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0090090 (negative regulation of canonical Wnt signaling pathway), the IEA annotation with qualifier involved_in from GO_REF:0000107 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0097191
extrinsic apoptotic signaling pathway
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: extrinsic apoptotic signaling pathway is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0097191 (extrinsic apoptotic signaling pathway), the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0097192
extrinsic apoptotic signaling pathway in absence of ligand
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: extrinsic apoptotic signaling pathway in absence of ligand is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0097192 (extrinsic apoptotic signaling pathway in absence of ligand), the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0098978
glutamatergic synapse
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: glutamatergic synapse is retained as a non-core cellular-component/localization annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0098978 (glutamatergic synapse), the IEA annotation with qualifier is_active_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0106310
protein serine kinase activity
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IEA
GO_REF:0000120 |
ACCEPT |
Summary: protein serine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0106310 (protein serine kinase activity), the IEA annotation with qualifier enables from GO_REF:0000120 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:1900026
positive regulation of substrate adhesion-dependent cell spreading
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: positive regulation of substrate adhesion-dependent cell spreading is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:1900026 (positive regulation of substrate adhesion-dependent cell spreading), the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:1900271
regulation of long-term synaptic potentiation
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: regulation of long-term synaptic potentiation is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:1900271 (regulation of long-term synaptic potentiation), the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:1901030
positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:1901030 (positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway), the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:1903566
positive regulation of protein localization to cilium
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: positive regulation of protein localization to cilium is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:1903566 (positive regulation of protein localization to cilium), the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:1904780
negative regulation of protein localization to centrosome
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: negative regulation of protein localization to centrosome is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:1904780 (negative regulation of protein localization to centrosome), the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:1990904
ribonucleoprotein complex
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: ribonucleoprotein complex is retained as a non-core cellular-component/localization annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:1990904 (ribonucleoprotein complex), the IEA annotation with qualifier part_of from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:1990909
Wnt signalosome
|
IEA
GO_REF:0000107 |
ACCEPT |
Summary: Wnt signalosome is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:1990909 (Wnt signalosome), the IEA annotation with qualifier part_of from GO_REF:0000107 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:2000727
positive regulation of cardiac muscle cell differentiation
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IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: positive regulation of cardiac muscle cell differentiation is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:2000727 (positive regulation of cardiac muscle cell differentiation), the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0004674
protein serine/threonine kinase activity
|
IDA
PMID:40274799 TTC36 promotes proliferation and drug resistance in hepatoce... |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation with qualifier enables from PMID:40274799 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0060070
canonical Wnt signaling pathway
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TAS
Reactome:R-HSA-4641262 |
ACCEPT |
Summary: canonical Wnt signaling pathway is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0060070 (canonical Wnt signaling pathway), the TAS annotation with qualifier involved_in from Reactome:R-HSA-4641262 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:1900034
regulation of cellular response to heat
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TAS
Reactome:R-HSA-3371453 |
KEEP AS NON CORE |
Summary: regulation of cellular response to heat is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:1900034 (regulation of cellular response to heat), the TAS annotation with qualifier involved_in from Reactome:R-HSA-3371453 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0004674
protein serine/threonine kinase activity
|
TAS
Reactome:R-HSA-195283 |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation with qualifier enables from Reactome:R-HSA-195283 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004674
protein serine/threonine kinase activity
|
TAS
Reactome:R-HSA-195287 |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation with qualifier enables from Reactome:R-HSA-195287 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004674
protein serine/threonine kinase activity
|
TAS
Reactome:R-HSA-195300 |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation with qualifier enables from Reactome:R-HSA-195300 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004674
protein serine/threonine kinase activity
|
TAS
Reactome:R-HSA-201677 |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation with qualifier enables from Reactome:R-HSA-201677 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004674
protein serine/threonine kinase activity
|
TAS
Reactome:R-HSA-3371435 |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation with qualifier enables from Reactome:R-HSA-3371435 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004674
protein serine/threonine kinase activity
|
TAS
Reactome:R-HSA-399951 |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation with qualifier enables from Reactome:R-HSA-399951 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004674
protein serine/threonine kinase activity
|
TAS
Reactome:R-HSA-5610732 |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation with qualifier enables from Reactome:R-HSA-5610732 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004674
protein serine/threonine kinase activity
|
TAS
Reactome:R-HSA-9683664 |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation with qualifier enables from Reactome:R-HSA-9683664 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004674
protein serine/threonine kinase activity
|
TAS
Reactome:R-HSA-9729260 |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation with qualifier enables from Reactome:R-HSA-9729260 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004674
protein serine/threonine kinase activity
|
TAS
Reactome:R-HSA-9762094 |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation with qualifier enables from Reactome:R-HSA-9762094 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004674
protein serine/threonine kinase activity
|
TAS
Reactome:R-HSA-9824995 |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation with qualifier enables from Reactome:R-HSA-9824995 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004674
protein serine/threonine kinase activity
|
TAS
Reactome:R-HSA-9824999 |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation with qualifier enables from Reactome:R-HSA-9824999 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004674
protein serine/threonine kinase activity
|
TAS
Reactome:R-HSA-9929360 |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation with qualifier enables from Reactome:R-HSA-9929360 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004674
protein serine/threonine kinase activity
|
TAS
Reactome:R-HSA-9943675 |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation with qualifier enables from Reactome:R-HSA-9943675 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004674
protein serine/threonine kinase activity
|
TAS
Reactome:R-NUL-209146 |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation with qualifier enables from Reactome:R-NUL-209146 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004674
protein serine/threonine kinase activity
|
TAS
Reactome:R-NUL-9008636 |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation with qualifier enables from Reactome:R-NUL-9008636 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005634
nucleus
|
IDA
PMID:12223487 The regulation of glycogen synthase kinase-3 nuclear export ... |
ACCEPT |
Summary: nucleus is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005634 (nucleus), the IDA annotation with qualifier located_in from PMID:12223487 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005737
cytoplasm
|
IDA
PMID:12223487 The regulation of glycogen synthase kinase-3 nuclear export ... |
ACCEPT |
Summary: cytoplasm is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005737 (cytoplasm), the IDA annotation with qualifier located_in from PMID:12223487 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0030877
beta-catenin destruction complex
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NAS
PMID:9601641 Downregulation of beta-catenin by human Axin and its associa... |
ACCEPT |
Summary: beta-catenin destruction complex is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0030877 (beta-catenin destruction complex), the NAS annotation with qualifier part_of from PMID:9601641 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0043161
proteasome-mediated ubiquitin-dependent protein catabolic process
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NAS
PMID:9601641 Downregulation of beta-catenin by human Axin and its associa... |
ACCEPT |
Summary: proteasome-mediated ubiquitin-dependent protein catabolic process is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process), the NAS annotation with qualifier involved_in from PMID:9601641 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0046825
regulation of protein export from nucleus
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IDA
PMID:12223487 The regulation of glycogen synthase kinase-3 nuclear export ... |
KEEP AS NON CORE |
Summary: regulation of protein export from nucleus is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0046825 (regulation of protein export from nucleus), the IDA annotation with qualifier involved_in from PMID:12223487 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0060070
canonical Wnt signaling pathway
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IDA
PMID:10428961 Axin and Frat1 interact with dvl and GSK, bridging Dvl to GS... |
ACCEPT |
Summary: canonical Wnt signaling pathway is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0060070 (canonical Wnt signaling pathway), the IDA annotation with qualifier involved_in from PMID:10428961 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004672
protein kinase activity
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IMP
PMID:25733715 GSK3- and PRMT-1-dependent modifications of desmoplakin cont... |
MODIFY |
Summary: protein kinase activity is directionally related to GSK3B biology but is not the best curation target; protein serine/threonine kinase activity better captures the specific supported function or process.
Reason: For GO:0004672 (protein kinase activity), the IMP annotation with qualifier enables from PMID:25733715 supports a relationship to GSK3B, but the current term is less precise than protein serine/threonine kinase activity for the evidence and for the synthesized core/non-core role of GSK3B. The MODIFY action preserves the biological intent while pointing curators to the more informative GO term.
Proposed replacements:
protein serine/threonine kinase activity
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GO:0032880
regulation of protein localization
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IMP
PMID:25733715 GSK3- and PRMT-1-dependent modifications of desmoplakin cont... |
MARK AS OVER ANNOTATED |
Summary: regulation of protein localization is marked over-annotated for GSK3B because this biological-process term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0032880 (regulation of protein localization), the IMP annotation with qualifier involved_in from PMID:25733715 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
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GO:0004674
protein serine/threonine kinase activity
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IDA
PMID:16705181 Multisite protein kinase A and glycogen synthase kinase 3bet... |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation with qualifier enables from PMID:16705181 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0045879
negative regulation of smoothened signaling pathway
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IDA
PMID:16705181 Multisite protein kinase A and glycogen synthase kinase 3bet... |
KEEP AS NON CORE |
Summary: negative regulation of smoothened signaling pathway is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0045879 (negative regulation of smoothened signaling pathway), the IDA annotation with qualifier involved_in from PMID:16705181 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0005654
nucleoplasm
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IDA
GO_REF:0000052 |
ACCEPT |
Summary: nucleoplasm is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005654 (nucleoplasm), the IDA annotation with qualifier located_in from GO_REF:0000052 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005634
nucleus
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EXP
PMID:21029237 Modulation of tau phosphorylation by the kinase PKR: implica... |
ACCEPT |
Summary: nucleus is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005634 (nucleus), the EXP annotation with qualifier located_in from PMID:21029237 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005737
cytoplasm
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EXP
PMID:21029237 Modulation of tau phosphorylation by the kinase PKR: implica... |
ACCEPT |
Summary: cytoplasm is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005737 (cytoplasm), the EXP annotation with qualifier located_in from PMID:21029237 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005737
cytoplasm
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EXP
PMID:25169422 HN1 negatively influences the Ξ²-catenin/E-cadherin interacti... |
ACCEPT |
Summary: cytoplasm is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005737 (cytoplasm), the EXP annotation with qualifier located_in from PMID:25169422 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005737
cytoplasm
|
EXP
PMID:25733715 GSK3- and PRMT-1-dependent modifications of desmoplakin cont... |
ACCEPT |
Summary: cytoplasm is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005737 (cytoplasm), the EXP annotation with qualifier located_in from PMID:25733715 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005737
cytoplasm
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EXP
PMID:35606353 GSK3Ξ² palmitoylation mediated by ZDHHC4 promotes tumorigenic... |
ACCEPT |
Summary: cytoplasm is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005737 (cytoplasm), the EXP annotation with qualifier located_in from PMID:35606353 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0106310
protein serine kinase activity
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EXP
PMID:17050006 Glycogen synthase kinase-3beta binds to E2F1 and regulates i... |
ACCEPT |
Summary: protein serine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0106310 (protein serine kinase activity), the EXP annotation with qualifier enables from PMID:17050006 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0106310
protein serine kinase activity
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EXP
PMID:17681942 Regulation of human cytidine triphosphate synthetase 1 by gl... |
ACCEPT |
Summary: protein serine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0106310 (protein serine kinase activity), the EXP annotation with qualifier enables from PMID:17681942 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0106310
protein serine kinase activity
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EXP
PMID:21343617 ER stress inhibits mTORC2 and Akt signaling through GSK-3Ξ²-m... |
ACCEPT |
Summary: protein serine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0106310 (protein serine kinase activity), the EXP annotation with qualifier enables from PMID:21343617 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0106310
protein serine kinase activity
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EXP
PMID:22539723 GSK3-TIP60-ULK1 signaling pathway links growth factor depriv... |
ACCEPT |
Summary: protein serine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0106310 (protein serine kinase activity), the EXP annotation with qualifier enables from PMID:22539723 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0106310
protein serine kinase activity
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EXP
PMID:25827072 FBXO11 promotes ubiquitination of the Snail family of transc... |
ACCEPT |
Summary: protein serine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0106310 (protein serine kinase activity), the EXP annotation with qualifier enables from PMID:25827072 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0106310
protein serine kinase activity
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EXP
PMID:28992046 Phosphorylated E2F1 is stabilized by nuclear USP11 to drive ... |
ACCEPT |
Summary: protein serine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0106310 (protein serine kinase activity), the EXP annotation with qualifier enables from PMID:28992046 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0106310
protein serine kinase activity
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EXP
PMID:29059170 SPSB3 targets SNAIL for degradation in GSK-3Ξ² phosphorylatio... |
ACCEPT |
Summary: protein serine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0106310 (protein serine kinase activity), the EXP annotation with qualifier enables from PMID:29059170 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0032481
positive regulation of type I interferon production
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ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: positive regulation of type I interferon production is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0032481 (positive regulation of type I interferon production), the ISS annotation with qualifier involved_in from GO_REF:0000024 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0160213
beta-arrestin-dependent dopamine receptor signaling pathway
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NAS
PMID:21711983 A role for Akt and glycogen synthase kinase-3 as integrators... |
KEEP AS NON CORE |
Summary: beta-arrestin-dependent dopamine receptor signaling pathway is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0160213 (beta-arrestin-dependent dopamine receptor signaling pathway), the NAS annotation with qualifier involved_in from PMID:21711983 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0019082
viral protein processing
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TAS
Reactome:R-HSA-9683610 |
KEEP AS NON CORE |
Summary: viral protein processing is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0019082 (viral protein processing), the TAS annotation with qualifier involved_in from Reactome:R-HSA-9683610 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0003170
heart valve development
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ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: heart valve development is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0003170 (heart valve development), the ISS annotation with qualifier involved_in from GO_REF:0000024 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0004674
protein serine/threonine kinase activity
|
IDA
PMID:25897075 Rictor Undergoes Glycogen Synthase Kinase 3 (GSK3)-dependent... |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation with qualifier enables from PMID:25897075 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0016055
Wnt signaling pathway
|
IMP
PMID:18156211 Regulation of endothelial cell cytoskeletal reorganization b... |
ACCEPT |
Summary: Wnt signaling pathway is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0016055 (Wnt signaling pathway), the IMP annotation with qualifier involved_in from PMID:18156211 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0090090
negative regulation of canonical Wnt signaling pathway
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IMP
PMID:24023731 miR-346 regulates osteogenic differentiation of human bone m... |
ACCEPT |
Summary: negative regulation of canonical Wnt signaling pathway is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0090090 (negative regulation of canonical Wnt signaling pathway), the IMP annotation with qualifier involved_in from PMID:24023731 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005788
endoplasmic reticulum lumen
|
TAS
Reactome:R-HSA-9929360 |
KEEP AS NON CORE |
Summary: endoplasmic reticulum lumen is retained as a non-core cellular-component/localization annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005788 (endoplasmic reticulum lumen), the TAS annotation with qualifier located_in from Reactome:R-HSA-9929360 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0030877
beta-catenin destruction complex
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IDA
PMID:18593713 Smad7 stabilizes beta-catenin binding to E-cadherin complex ... |
ACCEPT |
Summary: beta-catenin destruction complex is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0030877 (beta-catenin destruction complex), the IDA annotation with qualifier part_of from PMID:18593713 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0097110
scaffold protein binding
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IPI
PMID:18593713 Smad7 stabilizes beta-catenin binding to E-cadherin complex ... |
KEEP AS NON CORE |
Summary: scaffold protein binding is retained as a non-core molecular-function annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0097110 (scaffold protein binding), the IPI annotation with qualifier enables from PMID:18593713 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0034976
response to endoplasmic reticulum stress
|
IDA
PMID:21343617 ER stress inhibits mTORC2 and Akt signaling through GSK-3Ξ²-m... |
KEEP AS NON CORE |
Summary: response to endoplasmic reticulum stress is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0034976 (response to endoplasmic reticulum stress), the IDA annotation with qualifier involved_in from PMID:21343617 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0004674
protein serine/threonine kinase activity
|
IDA
PMID:21343617 ER stress inhibits mTORC2 and Akt signaling through GSK-3Ξ²-m... |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation with qualifier enables from PMID:21343617 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:1903940
negative regulation of TORC2 signaling
|
IDA
PMID:21343617 ER stress inhibits mTORC2 and Akt signaling through GSK-3Ξ²-m... |
KEEP AS NON CORE |
Summary: negative regulation of TORC2 signaling is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:1903940 (negative regulation of TORC2 signaling), the IDA annotation with qualifier involved_in from PMID:21343617 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0004674
protein serine/threonine kinase activity
|
IDA
PMID:15448698 Dual regulation of Snail by GSK-3beta-mediated phosphorylati... |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation with qualifier enables from PMID:15448698 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004674
protein serine/threonine kinase activity
|
IDA
PMID:25827072 FBXO11 promotes ubiquitination of the Snail family of transc... |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation with qualifier enables from PMID:25827072 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004674
protein serine/threonine kinase activity
|
IDA
PMID:29059170 SPSB3 targets SNAIL for degradation in GSK-3Ξ² phosphorylatio... |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation with qualifier enables from PMID:29059170 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0010719
negative regulation of epithelial to mesenchymal transition
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IDA
PMID:15448698 Dual regulation of Snail by GSK-3beta-mediated phosphorylati... |
KEEP AS NON CORE |
Summary: negative regulation of epithelial to mesenchymal transition is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0010719 (negative regulation of epithelial to mesenchymal transition), the IDA annotation with qualifier involved_in from PMID:15448698 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0010719
negative regulation of epithelial to mesenchymal transition
|
IDA
PMID:25827072 FBXO11 promotes ubiquitination of the Snail family of transc... |
KEEP AS NON CORE |
Summary: negative regulation of epithelial to mesenchymal transition is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0010719 (negative regulation of epithelial to mesenchymal transition), the IDA annotation with qualifier involved_in from PMID:25827072 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0010719
negative regulation of epithelial to mesenchymal transition
|
IDA
PMID:29059170 SPSB3 targets SNAIL for degradation in GSK-3Ξ² phosphorylatio... |
KEEP AS NON CORE |
Summary: negative regulation of epithelial to mesenchymal transition is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0010719 (negative regulation of epithelial to mesenchymal transition), the IDA annotation with qualifier involved_in from PMID:29059170 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0005515
protein binding
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IPI
PMID:34058472 A catenin of the plakophilin-subfamily, Pkp3, responds to ca... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:34058472 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
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GO:0098978
glutamatergic synapse
|
EXP
PMID:17989287 Activation of glycogen synthase kinase-3 inhibits long-term ... |
KEEP AS NON CORE |
Summary: glutamatergic synapse is retained as a non-core cellular-component/localization annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0098978 (glutamatergic synapse), the EXP annotation with qualifier is_active_in from PMID:17989287 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0098978
glutamatergic synapse
|
IDA
PMID:17989287 Activation of glycogen synthase kinase-3 inhibits long-term ... |
KEEP AS NON CORE |
Summary: glutamatergic synapse is retained as a non-core cellular-component/localization annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0098978 (glutamatergic synapse), the IDA annotation with qualifier is_active_in from PMID:17989287 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0098978
glutamatergic synapse
|
IMP
PMID:17989287 Activation of glycogen synthase kinase-3 inhibits long-term ... |
KEEP AS NON CORE |
Summary: glutamatergic synapse is retained as a non-core cellular-component/localization annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0098978 (glutamatergic synapse), the IMP annotation with qualifier is_active_in from PMID:17989287 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0099171
presynaptic modulation of chemical synaptic transmission
|
EXP
PMID:17989287 Activation of glycogen synthase kinase-3 inhibits long-term ... |
KEEP AS NON CORE |
Summary: presynaptic modulation of chemical synaptic transmission is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0099171 (presynaptic modulation of chemical synaptic transmission), the EXP annotation with qualifier involved_in from PMID:17989287 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0099171
presynaptic modulation of chemical synaptic transmission
|
IDA
PMID:17989287 Activation of glycogen synthase kinase-3 inhibits long-term ... |
KEEP AS NON CORE |
Summary: presynaptic modulation of chemical synaptic transmission is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0099171 (presynaptic modulation of chemical synaptic transmission), the IDA annotation with qualifier involved_in from PMID:17989287 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0099171
presynaptic modulation of chemical synaptic transmission
|
IMP
PMID:17989287 Activation of glycogen synthase kinase-3 inhibits long-term ... |
KEEP AS NON CORE |
Summary: presynaptic modulation of chemical synaptic transmission is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0099171 (presynaptic modulation of chemical synaptic transmission), the IMP annotation with qualifier involved_in from PMID:17989287 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0007005
mitochondrion organization
|
IMP
PMID:25118933 The protease Omi regulates mitochondrial biogenesis through ... |
KEEP AS NON CORE |
Summary: mitochondrion organization is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0007005 (mitochondrion organization), the IMP annotation with qualifier involved_in from PMID:25118933 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0030336
negative regulation of cell migration
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IDA
PMID:27494834 GSK3Ξ² inactivation promotes the oncogenic functions of EZH2 ... |
KEEP AS NON CORE |
Summary: negative regulation of cell migration is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0030336 (negative regulation of cell migration), the IDA annotation with qualifier involved_in from PMID:27494834 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0060070
canonical Wnt signaling pathway
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IDA
PMID:16890161 Caveolin is necessary for Wnt-3a-dependent internalization o... |
ACCEPT |
Summary: canonical Wnt signaling pathway is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0060070 (canonical Wnt signaling pathway), the IDA annotation with qualifier involved_in from PMID:16890161 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0045668
negative regulation of osteoblast differentiation
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IMP
PMID:24023731 miR-346 regulates osteogenic differentiation of human bone m... |
KEEP AS NON CORE |
Summary: negative regulation of osteoblast differentiation is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0045668 (negative regulation of osteoblast differentiation), the IMP annotation with qualifier involved_in from PMID:24023731 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0032436
positive regulation of proteasomal ubiquitin-dependent protein catabolic process
|
IDA
PMID:22660580 F-box protein FBXL19-mediated ubiquitination and degradation... |
ACCEPT |
Summary: positive regulation of proteasomal ubiquitin-dependent protein catabolic process is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein catabolic process), the IDA annotation with qualifier involved_in from PMID:22660580 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0019082
viral protein processing
|
TAS
Reactome:R-HSA-9694631 |
KEEP AS NON CORE |
Summary: viral protein processing is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0019082 (viral protein processing), the TAS annotation with qualifier involved_in from Reactome:R-HSA-9694631 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0004674
protein serine/threonine kinase activity
|
IDA
PMID:29142209 Fbxo4-mediated degradation of Fxr1 suppresses tumorigenesis ... |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation with qualifier enables from PMID:29142209 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0031398
positive regulation of protein ubiquitination
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IDA
PMID:29142209 Fbxo4-mediated degradation of Fxr1 suppresses tumorigenesis ... |
ACCEPT |
Summary: positive regulation of protein ubiquitination is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0031398 (positive regulation of protein ubiquitination), the IDA annotation with qualifier involved_in from PMID:29142209 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0097191
extrinsic apoptotic signaling pathway
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: extrinsic apoptotic signaling pathway is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0097191 (extrinsic apoptotic signaling pathway), the ISS annotation with qualifier involved_in from GO_REF:0000024 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0010628
positive regulation of gene expression
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: positive regulation of gene expression is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0010628 (positive regulation of gene expression), the ISS annotation with qualifier involved_in from GO_REF:0000024 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0004674
protein serine/threonine kinase activity
|
IDA
PMID:28992046 Phosphorylated E2F1 is stabilized by nuclear USP11 to drive ... |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation with qualifier enables from PMID:28992046 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0045724
positive regulation of cilium assembly
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: positive regulation of cilium assembly is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0045724 (positive regulation of cilium assembly), the ISS annotation with qualifier involved_in from GO_REF:0000024 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:1903566
positive regulation of protein localization to cilium
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: positive regulation of protein localization to cilium is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:1903566 (positive regulation of protein localization to cilium), the ISS annotation with qualifier involved_in from GO_REF:0000024 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0106310
protein serine kinase activity
|
IGI
PMID:30556160 miR-219-5p inhibits tau phosphorylation by targeting TTBK1 a... |
ACCEPT |
Summary: protein serine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0106310 (protein serine kinase activity), the IGI annotation with qualifier enables from PMID:30556160 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0010628
positive regulation of gene expression
|
IMP
PMID:26315788 miRNA-99b-3p functions as a potential tumor suppressor by ta... |
KEEP AS NON CORE |
Summary: positive regulation of gene expression is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0010628 (positive regulation of gene expression), the IMP annotation with qualifier acts_upstream_of from PMID:26315788 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0010628
positive regulation of gene expression
|
IMP
PMID:27050373 The role of glycogen synthase kinase-3Ξ² (GSK-3Ξ²) in endometr... |
KEEP AS NON CORE |
Summary: positive regulation of gene expression is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0010628 (positive regulation of gene expression), the IMP annotation with qualifier acts_upstream_of from PMID:27050373 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0010629
negative regulation of gene expression
|
IMP
PMID:27050373 The role of glycogen synthase kinase-3Ξ² (GSK-3Ξ²) in endometr... |
KEEP AS NON CORE |
Summary: negative regulation of gene expression is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0010629 (negative regulation of gene expression), the IMP annotation with qualifier acts_upstream_of from PMID:27050373 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0090090
negative regulation of canonical Wnt signaling pathway
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IGI
PMID:27846906 Upregulation of miR-501-5p activates the wnt/Ξ²-catenin signa... |
ACCEPT |
Summary: negative regulation of canonical Wnt signaling pathway is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0090090 (negative regulation of canonical Wnt signaling pathway), the IGI annotation with qualifier involved_in from PMID:27846906 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0010629
negative regulation of gene expression
|
IMP
PMID:28122350 Transcriptional suppression of microRNA-27a contributes to l... |
KEEP AS NON CORE |
Summary: negative regulation of gene expression is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0010629 (negative regulation of gene expression), the IMP annotation with qualifier acts_upstream_of from PMID:28122350 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0045597
positive regulation of cell differentiation
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IMP
PMID:28122350 Transcriptional suppression of microRNA-27a contributes to l... |
KEEP AS NON CORE |
Summary: positive regulation of cell differentiation is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0045597 (positive regulation of cell differentiation), the IMP annotation with qualifier involved_in from PMID:28122350 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0071300
cellular response to retinoic acid
|
IMP
PMID:28122350 Transcriptional suppression of microRNA-27a contributes to l... |
KEEP AS NON CORE |
Summary: cellular response to retinoic acid is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0071300 (cellular response to retinoic acid), the IMP annotation with qualifier involved_in from PMID:28122350 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:2000740
negative regulation of mesenchymal stem cell differentiation
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IMP
PMID:24023731 miR-346 regulates osteogenic differentiation of human bone m... |
KEEP AS NON CORE |
Summary: negative regulation of mesenchymal stem cell differentiation is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:2000740 (negative regulation of mesenchymal stem cell differentiation), the IMP annotation with qualifier involved_in from PMID:24023731 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0004674
protein serine/threonine kinase activity
|
IDA
PMID:19364825 Identification of domains responsible for ubiquitin-dependen... |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation with qualifier enables from PMID:19364825 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0032436
positive regulation of proteasomal ubiquitin-dependent protein catabolic process
|
IDA
PMID:19364825 Identification of domains responsible for ubiquitin-dependen... |
ACCEPT |
Summary: positive regulation of proteasomal ubiquitin-dependent protein catabolic process is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein catabolic process), the IDA annotation with qualifier involved_in from PMID:19364825 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005515
protein binding
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IPI
PMID:18846110 Identification of an antiapoptotic protein complex at death ... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:18846110 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
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GO:1902042
negative regulation of extrinsic apoptotic signaling pathway via death domain receptors
|
IMP
PMID:18846110 Identification of an antiapoptotic protein complex at death ... |
KEEP AS NON CORE |
Summary: negative regulation of extrinsic apoptotic signaling pathway via death domain receptors is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:1902042 (negative regulation of extrinsic apoptotic signaling pathway via death domain receptors), the IMP annotation with qualifier involved_in from PMID:18846110 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0005515
protein binding
|
IPI
PMID:31073040 LMBR1L regulates lymphopoiesis through Wnt/Ξ²-catenin signali... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:31073040 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
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GO:0150101
regulation of microtubule anchoring at centrosome
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IMP
PMID:17139249 GSK-3beta-regulated interaction of BICD with dynein is invol... |
KEEP AS NON CORE |
Summary: regulation of microtubule anchoring at centrosome is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0150101 (regulation of microtubule anchoring at centrosome), the IMP annotation with qualifier involved_in from PMID:17139249 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0010508
positive regulation of autophagy
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ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: positive regulation of autophagy is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0010508 (positive regulation of autophagy), the ISS annotation with qualifier involved_in from GO_REF:0000024 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0042752
regulation of circadian rhythm
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ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: regulation of circadian rhythm is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0042752 (regulation of circadian rhythm), the ISS annotation with qualifier involved_in from GO_REF:0000024 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:1900271
regulation of long-term synaptic potentiation
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ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: regulation of long-term synaptic potentiation is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:1900271 (regulation of long-term synaptic potentiation), the ISS annotation with qualifier involved_in from GO_REF:0000024 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0106027
neuron projection organization
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ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: neuron projection organization is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0106027 (neuron projection organization), the ISS annotation with qualifier involved_in from GO_REF:0000024 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0005515
protein binding
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IPI
PMID:28903391 Cancer/testis antigen PIWIL2 suppresses circadian rhythms by... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:28903391 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
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GO:0048156
tau protein binding
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NAS
PMID:28386764 Roles of tau protein in health and disease. |
ACCEPT |
Summary: tau protein binding is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0048156 (tau protein binding), the NAS annotation with qualifier enables from PMID:28386764 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0050321
tau-protein kinase activity
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NAS
PMID:28386764 Roles of tau protein in health and disease. |
ACCEPT |
Summary: tau-protein kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0050321 (tau-protein kinase activity), the NAS annotation with qualifier enables from PMID:28386764 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0090090
negative regulation of canonical Wnt signaling pathway
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IC
PMID:9601641 Downregulation of beta-catenin by human Axin and its associa... |
ACCEPT |
Summary: negative regulation of canonical Wnt signaling pathway is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0090090 (negative regulation of canonical Wnt signaling pathway), the IC annotation with qualifier involved_in from PMID:9601641 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004672
protein kinase activity
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IMP
PMID:16981698 GSKIP is homologous to the Axin GSK3beta interaction domain ... |
MODIFY |
Summary: protein kinase activity is directionally related to GSK3B biology but is not the best curation target; protein serine/threonine kinase activity better captures the specific supported function or process.
Reason: For GO:0004672 (protein kinase activity), the IMP annotation with qualifier enables from PMID:16981698 supports a relationship to GSK3B, but the current term is less precise than protein serine/threonine kinase activity for the evidence and for the synthesized core/non-core role of GSK3B. The MODIFY action preserves the biological intent while pointing curators to the more informative GO term.
Proposed replacements:
protein serine/threonine kinase activity
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GO:0004674
protein serine/threonine kinase activity
|
IMP
PMID:16981698 GSKIP is homologous to the Axin GSK3beta interaction domain ... |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the IMP annotation with qualifier enables from PMID:16981698 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005515
protein binding
|
IPI
PMID:16981698 GSKIP is homologous to the Axin GSK3beta interaction domain ... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:16981698 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
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GO:0006468
protein phosphorylation
|
IMP
PMID:16981698 GSKIP is homologous to the Axin GSK3beta interaction domain ... |
ACCEPT |
Summary: protein phosphorylation is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0006468 (protein phosphorylation), the IMP annotation with qualifier involved_in from PMID:16981698 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0090090
negative regulation of canonical Wnt signaling pathway
|
ISS
GO_REF:0000024 |
ACCEPT |
Summary: negative regulation of canonical Wnt signaling pathway is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0090090 (negative regulation of canonical Wnt signaling pathway), the ISS annotation with qualifier involved_in from GO_REF:0000024 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005515
protein binding
|
IPI
PMID:28829046 Twa1/Gid8 is a Ξ²-catenin nuclear retention factor in Wnt sig... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:28829046 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
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GO:0030010
establishment of cell polarity
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: establishment of cell polarity is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0030010 (establishment of cell polarity), the ISS annotation with qualifier involved_in from GO_REF:0000024 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0030010
establishment of cell polarity
|
TAS
PMID:18268107 Microtubule stabilization specifies initial neuronal polariz... |
KEEP AS NON CORE |
Summary: establishment of cell polarity is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0030010 (establishment of cell polarity), the TAS annotation with qualifier involved_in from PMID:18268107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0030011
maintenance of cell polarity
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: maintenance of cell polarity is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0030011 (maintenance of cell polarity), the ISS annotation with qualifier involved_in from GO_REF:0000024 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0030011
maintenance of cell polarity
|
TAS
PMID:18268107 Microtubule stabilization specifies initial neuronal polariz... |
KEEP AS NON CORE |
Summary: maintenance of cell polarity is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0030011 (maintenance of cell polarity), the TAS annotation with qualifier involved_in from PMID:18268107 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0030424
axon
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: axon is retained as a non-core cellular-component/localization annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0030424 (axon), the ISS annotation with qualifier located_in from GO_REF:0000024 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0030425
dendrite
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: dendrite is retained as a non-core cellular-component/localization annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0030425 (dendrite), the ISS annotation with qualifier located_in from GO_REF:0000024 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0030516
regulation of axon extension
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ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: regulation of axon extension is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0030516 (regulation of axon extension), the ISS annotation with qualifier involved_in from GO_REF:0000024 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0048814
regulation of dendrite morphogenesis
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ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: regulation of dendrite morphogenesis is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0048814 (regulation of dendrite morphogenesis), the ISS annotation with qualifier involved_in from GO_REF:0000024 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0050770
regulation of axonogenesis
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ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: regulation of axonogenesis is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0050770 (regulation of axonogenesis), the ISS annotation with qualifier involved_in from GO_REF:0000024 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0070507
regulation of microtubule cytoskeleton organization
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ISS
GO_REF:0000024 |
ACCEPT |
Summary: regulation of microtubule cytoskeleton organization is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0070507 (regulation of microtubule cytoskeleton organization), the ISS annotation with qualifier involved_in from GO_REF:0000024 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004674
protein serine/threonine kinase activity
|
NAS
PMID:28386764 Roles of tau protein in health and disease. |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the NAS annotation with qualifier enables from PMID:28386764 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0060079
excitatory postsynaptic potential
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NAS
PMID:21711983 A role for Akt and glycogen synthase kinase-3 as integrators... |
KEEP AS NON CORE |
Summary: excitatory postsynaptic potential is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0060079 (excitatory postsynaptic potential), the NAS annotation with qualifier involved_in from PMID:21711983 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0005515
protein binding
|
IPI
PMID:25897075 Rictor Undergoes Glycogen Synthase Kinase 3 (GSK3)-dependent... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:25897075 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
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GO:0032436
positive regulation of proteasomal ubiquitin-dependent protein catabolic process
|
IMP
PMID:25897075 Rictor Undergoes Glycogen Synthase Kinase 3 (GSK3)-dependent... |
ACCEPT |
Summary: positive regulation of proteasomal ubiquitin-dependent protein catabolic process is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein catabolic process), the IMP annotation with qualifier involved_in from PMID:25897075 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004674
protein serine/threonine kinase activity
|
IDA
PMID:17139249 GSK-3beta-regulated interaction of BICD with dynein is invol... |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation with qualifier enables from PMID:17139249 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0034452
dynactin binding
|
IPI
PMID:17139249 GSK-3beta-regulated interaction of BICD with dynein is invol... |
KEEP AS NON CORE |
Summary: dynactin binding is retained as a non-core molecular-function annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0034452 (dynactin binding), the IPI annotation with qualifier enables from PMID:17139249 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:1904781
positive regulation of protein localization to centrosome
|
IMP
PMID:17139249 GSK-3beta-regulated interaction of BICD with dynein is invol... |
KEEP AS NON CORE |
Summary: positive regulation of protein localization to centrosome is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:1904781 (positive regulation of protein localization to centrosome), the IMP annotation with qualifier involved_in from PMID:17139249 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0005813
centrosome
|
IDA
PMID:17139249 GSK-3beta-regulated interaction of BICD with dynein is invol... |
KEEP AS NON CORE |
Summary: centrosome is retained as a non-core cellular-component/localization annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005813 (centrosome), the IDA annotation with qualifier located_in from PMID:17139249 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0004674
protein serine/threonine kinase activity
|
NAS
PMID:8725894 Glycogen synthase kinase 3 alpha and 3 beta do not colocaliz... |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the NAS annotation with qualifier enables from PMID:8725894 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:1904646
cellular response to amyloid-beta
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: cellular response to amyloid-beta is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:1904646 (cellular response to amyloid-beta), the ISS annotation with qualifier involved_in from GO_REF:0000024 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0005515
protein binding
|
IPI
PMID:20007971 Glycogen synthase kinase 3beta interaction protein functions... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:20007971 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
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GO:0031175
neuron projection development
|
IDA
PMID:19830702 GSKIP, an inhibitor of GSK3beta, mediates the N-cadherin/bet... |
ACCEPT |
Summary: neuron projection development is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0031175 (neuron projection development), the IDA annotation with qualifier involved_in from PMID:19830702 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005515
protein binding
|
IPI
PMID:25920809 GSKIP- and GSK3-mediated anchoring strengthens cAMP/PKA/Drp1... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:25920809 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
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GO:0005515
protein binding
|
IPI
PMID:27484798 The A-Kinase Anchoring Protein (AKAP) Glycogen Synthase Kina... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:27484798 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
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GO:0002020
protease binding
|
IPI
PMID:25118933 The protease Omi regulates mitochondrial biogenesis through ... |
KEEP AS NON CORE |
Summary: protease binding is retained as a non-core molecular-function annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0002020 (protease binding), the IPI annotation with qualifier enables from PMID:25118933 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0004672
protein kinase activity
|
TAS
PMID:26049140 A WNT1-regulated developmental gene cascade prevents dopamin... |
MODIFY |
Summary: protein kinase activity is directionally related to GSK3B biology but is not the best curation target; protein serine/threonine kinase activity better captures the specific supported function or process.
Reason: For GO:0004672 (protein kinase activity), the TAS annotation with qualifier enables from PMID:26049140 supports a relationship to GSK3B, but the current term is less precise than protein serine/threonine kinase activity for the evidence and for the synthesized core/non-core role of GSK3B. The MODIFY action preserves the biological intent while pointing curators to the more informative GO term.
Proposed replacements:
protein serine/threonine kinase activity
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GO:0035556
intracellular signal transduction
|
TAS
PMID:26049140 A WNT1-regulated developmental gene cascade prevents dopamin... |
MARK AS OVER ANNOTATED |
Summary: intracellular signal transduction is marked over-annotated for GSK3B because this biological-process term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0035556 (intracellular signal transduction), the TAS annotation with qualifier involved_in from PMID:26049140 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
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GO:1904339
negative regulation of dopaminergic neuron differentiation
|
TAS
PMID:24431302 Wnt signaling in midbrain dopaminergic neuron development an... |
KEEP AS NON CORE |
Summary: negative regulation of dopaminergic neuron differentiation is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:1904339 (negative regulation of dopaminergic neuron differentiation), the TAS annotation with qualifier involved_in from PMID:24431302 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0004672
protein kinase activity
|
TAS
PMID:22988876 The importance of Wnt signalling for neurodegeneration in Pa... |
MODIFY |
Summary: protein kinase activity is directionally related to GSK3B biology but is not the best curation target; protein serine/threonine kinase activity better captures the specific supported function or process.
Reason: For GO:0004672 (protein kinase activity), the TAS annotation with qualifier enables from PMID:22988876 supports a relationship to GSK3B, but the current term is less precise than protein serine/threonine kinase activity for the evidence and for the synthesized core/non-core role of GSK3B. The MODIFY action preserves the biological intent while pointing curators to the more informative GO term.
Proposed replacements:
protein serine/threonine kinase activity
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GO:0004672
protein kinase activity
|
TAS
PMID:24115276 The regulation and deregulation of Wnt signaling by PARK gen... |
MODIFY |
Summary: protein kinase activity is directionally related to GSK3B biology but is not the best curation target; protein serine/threonine kinase activity better captures the specific supported function or process.
Reason: For GO:0004672 (protein kinase activity), the TAS annotation with qualifier enables from PMID:24115276 supports a relationship to GSK3B, but the current term is less precise than protein serine/threonine kinase activity for the evidence and for the synthesized core/non-core role of GSK3B. The MODIFY action preserves the biological intent while pointing curators to the more informative GO term.
Proposed replacements:
protein serine/threonine kinase activity
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GO:1990909
Wnt signalosome
|
TAS
PMID:24115276 The regulation and deregulation of Wnt signaling by PARK gen... |
ACCEPT |
Summary: Wnt signalosome is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:1990909 (Wnt signalosome), the TAS annotation with qualifier part_of from PMID:24115276 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004674
protein serine/threonine kinase activity
|
IDA
PMID:11955436 Control of beta-catenin phosphorylation/degradation by a dua... |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation with qualifier enables from PMID:11955436 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0030877
beta-catenin destruction complex
|
TAS
PMID:11955436 Control of beta-catenin phosphorylation/degradation by a dua... |
ACCEPT |
Summary: beta-catenin destruction complex is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0030877 (beta-catenin destruction complex), the TAS annotation with qualifier part_of from PMID:11955436 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
|
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GO:0032436
positive regulation of proteasomal ubiquitin-dependent protein catabolic process
|
IC
PMID:11955436 Control of beta-catenin phosphorylation/degradation by a dua... |
ACCEPT |
Summary: positive regulation of proteasomal ubiquitin-dependent protein catabolic process is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein catabolic process), the IC annotation with qualifier involved_in from PMID:11955436 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
|
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GO:0090090
negative regulation of canonical Wnt signaling pathway
|
IC
PMID:11955436 Control of beta-catenin phosphorylation/degradation by a dua... |
ACCEPT |
Summary: negative regulation of canonical Wnt signaling pathway is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0090090 (negative regulation of canonical Wnt signaling pathway), the IC annotation with qualifier involved_in from PMID:11955436 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
|
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GO:0004674
protein serine/threonine kinase activity
|
IDA
PMID:16315267 GSK3B polymorphisms alter transcription and splicing in Park... |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation with qualifier enables from PMID:16315267 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
|
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GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-9762094 |
ACCEPT |
Summary: nucleoplasm is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005654 (nucleoplasm), the TAS annotation with qualifier located_in from Reactome:R-HSA-9762094 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-9824995 |
ACCEPT |
Summary: nucleoplasm is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005654 (nucleoplasm), the TAS annotation with qualifier located_in from Reactome:R-HSA-9824995 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-9824999 |
ACCEPT |
Summary: nucleoplasm is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005654 (nucleoplasm), the TAS annotation with qualifier located_in from Reactome:R-HSA-9824999 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-9943675 |
ACCEPT |
Summary: nucleoplasm is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005654 (nucleoplasm), the TAS annotation with qualifier located_in from Reactome:R-HSA-9943675 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005654
nucleoplasm
|
TAS
Reactome:R-NUL-9008555 |
ACCEPT |
Summary: nucleoplasm is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005654 (nucleoplasm), the TAS annotation with qualifier located_in from Reactome:R-NUL-9008555 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005654
nucleoplasm
|
TAS
Reactome:R-NUL-9008636 |
ACCEPT |
Summary: nucleoplasm is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005654 (nucleoplasm), the TAS annotation with qualifier located_in from Reactome:R-NUL-9008636 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:1900181
negative regulation of protein localization to nucleus
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: negative regulation of protein localization to nucleus is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:1900181 (negative regulation of protein localization to nucleus), the ISS annotation with qualifier involved_in from GO_REF:0000024 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0005515
protein binding
|
IPI
PMID:24391509 NCYM, a Cis-antisense gene of MYCN, encodes a de novo evolve... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:24391509 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
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GO:0016301
kinase activity
|
IDA
PMID:24391509 NCYM, a Cis-antisense gene of MYCN, encodes a de novo evolve... |
MODIFY |
Summary: kinase activity is directionally related to GSK3B biology but is not the best curation target; protein serine/threonine kinase activity better captures the specific supported function or process.
Reason: For GO:0016301 (kinase activity), the IDA annotation with qualifier enables from PMID:24391509 supports a relationship to GSK3B, but the current term is less precise than protein serine/threonine kinase activity for the evidence and for the synthesized core/non-core role of GSK3B. The MODIFY action preserves the biological intent while pointing curators to the more informative GO term.
Proposed replacements:
protein serine/threonine kinase activity
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GO:0005515
protein binding
|
IPI
PMID:19706605 GSK-3 phosphorylates delta-catenin and negatively regulates ... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:19706605 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
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GO:0046777
protein autophosphorylation
|
IDA
PMID:23184662 Phosphorylation of eukaryotic elongation factor 2 (eEF2) by ... |
ACCEPT |
Summary: protein autophosphorylation is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0046777 (protein autophosphorylation), the IDA annotation with qualifier involved_in from PMID:23184662 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-5339713 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-5339713 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0036016
cellular response to interleukin-3
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: cellular response to interleukin-3 is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0036016 (cellular response to interleukin-3), the ISS annotation with qualifier involved_in from GO_REF:0000024 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0097192
extrinsic apoptotic signaling pathway in absence of ligand
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: extrinsic apoptotic signaling pathway in absence of ligand is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0097192 (extrinsic apoptotic signaling pathway in absence of ligand), the ISS annotation with qualifier involved_in from GO_REF:0000024 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:1901030
positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:1901030 (positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway), the ISS annotation with qualifier involved_in from GO_REF:0000024 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-2399966 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-2399966 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-1504186 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-1504186 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-195251 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-195251 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-195275 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-195275 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-195280 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-195280 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-195283 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-195283 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-195287 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-195287 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-195300 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-195300 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-195304 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-195304 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-195318 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-195318 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-201677 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-201677 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
|
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-201685 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-201685 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-2130279 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-2130279 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-2130282 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-2130282 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
|
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-2130286 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-2130286 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-3371435 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-3371435 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-399951 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-399951 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-4791278 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-4791278 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-4827388 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-4827388 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
|
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-4839634 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-4839634 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-4839635 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-4839635 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-4839638 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-4839638 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-4839734 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-4839734 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-4839746 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-4839746 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-5229343 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-5229343 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-5323526 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-5323526 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-5368596 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-5368596 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-5610732 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-5610732 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-9683664 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-9683664 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-9687724 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-9687724 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-HSA-9729260 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-HSA-9729260 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-NUL-1458902 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-NUL-1458902 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005829
cytosol
|
TAS
Reactome:R-NUL-209146 |
ACCEPT |
Summary: cytosol is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from Reactome:R-NUL-209146 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0007623
circadian rhythm
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: circadian rhythm is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0007623 (circadian rhythm), the ISS annotation with qualifier involved_in from GO_REF:0000024 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0032092
positive regulation of protein binding
|
ISS
GO_REF:0000024 |
MARK AS OVER ANNOTATED |
Summary: positive regulation of protein binding is marked over-annotated for GSK3B because this biological-process term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0032092 (positive regulation of protein binding), the ISS annotation with qualifier involved_in from GO_REF:0000024 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
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GO:0004674
protein serine/threonine kinase activity
|
IDA
PMID:9072970 Nuclear export of NF-ATc enhanced by glycogen synthase kinas... |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation with qualifier enables from PMID:9072970 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0030877
beta-catenin destruction complex
|
TAS
PMID:19366350 Glycogen synthase kinase 3: more than a namesake. |
ACCEPT |
Summary: beta-catenin destruction complex is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0030877 (beta-catenin destruction complex), the TAS annotation with qualifier part_of from PMID:19366350 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0045719
negative regulation of glycogen biosynthetic process
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TAS
PMID:19366350 Glycogen synthase kinase 3: more than a namesake. |
ACCEPT |
Summary: negative regulation of glycogen biosynthetic process is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0045719 (negative regulation of glycogen biosynthetic process), the TAS annotation with qualifier involved_in from PMID:19366350 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0050321
tau-protein kinase activity
|
IDA
PMID:14690523 Primed phosphorylation of tau at Thr231 by glycogen synthase... |
ACCEPT |
Summary: tau-protein kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0050321 (tau-protein kinase activity), the IDA annotation with qualifier enables from PMID:14690523 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0070885
negative regulation of calcineurin-NFAT signaling cascade
|
IMP
PMID:9072970 Nuclear export of NF-ATc enhanced by glycogen synthase kinas... |
KEEP AS NON CORE |
Summary: negative regulation of calcineurin-NFAT signaling cascade is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0070885 (negative regulation of calcineurin-NFAT signaling cascade), the IMP annotation with qualifier involved_in from PMID:9072970 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0090090
negative regulation of canonical Wnt signaling pathway
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TAS
PMID:19366350 Glycogen synthase kinase 3: more than a namesake. |
ACCEPT |
Summary: negative regulation of canonical Wnt signaling pathway is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0090090 (negative regulation of canonical Wnt signaling pathway), the TAS annotation with qualifier involved_in from PMID:19366350 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:2000077
negative regulation of type B pancreatic cell development
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TAS
PMID:19366350 Glycogen synthase kinase 3: more than a namesake. |
KEEP AS NON CORE |
Summary: negative regulation of type B pancreatic cell development is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:2000077 (negative regulation of type B pancreatic cell development), the TAS annotation with qualifier involved_in from PMID:19366350 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:2000466
negative regulation of glycogen (starch) synthase activity
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TAS
PMID:19366350 Glycogen synthase kinase 3: more than a namesake. |
ACCEPT |
Summary: negative regulation of glycogen (starch) synthase activity is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:2000466 (negative regulation of glycogen (starch) synthase activity), the TAS annotation with qualifier involved_in from PMID:19366350 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004674
protein serine/threonine kinase activity
|
IDA
PMID:18348280 Importance of autophosphorylation at Ser186 in the A-loop of... |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation with qualifier enables from PMID:18348280 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0019901
protein kinase binding
|
IPI
PMID:18348280 Importance of autophosphorylation at Ser186 in the A-loop of... |
KEEP AS NON CORE |
Summary: protein kinase binding is retained as a non-core molecular-function annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0019901 (protein kinase binding), the IPI annotation with qualifier enables from PMID:18348280 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0005813
centrosome
|
IDA
PMID:21399614 Novel asymmetrically localizing components of human centroso... |
KEEP AS NON CORE |
Summary: centrosome is retained as a non-core cellular-component/localization annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005813 (centrosome), the IDA annotation with qualifier located_in from PMID:21399614 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0005737
cytoplasm
|
IDA
PMID:20937854 ErbB2 receptor controls microtubule capture by recruiting AC... |
ACCEPT |
Summary: cytoplasm is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005737 (cytoplasm), the IDA annotation with qualifier located_in from PMID:20937854 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005886
plasma membrane
|
IDA
PMID:20937854 ErbB2 receptor controls microtubule capture by recruiting AC... |
ACCEPT |
Summary: plasma membrane is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005886 (plasma membrane), the IDA annotation with qualifier located_in from PMID:20937854 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0006468
protein phosphorylation
|
IDA
PMID:20937854 ErbB2 receptor controls microtubule capture by recruiting AC... |
ACCEPT |
Summary: protein phosphorylation is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0006468 (protein phosphorylation), the IDA annotation with qualifier involved_in from PMID:20937854 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0032886
regulation of microtubule-based process
|
IMP
PMID:20937854 ErbB2 receptor controls microtubule capture by recruiting AC... |
ACCEPT |
Summary: regulation of microtubule-based process is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0032886 (regulation of microtubule-based process), the IMP annotation with qualifier involved_in from PMID:20937854 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005515
protein binding
|
IPI
PMID:9731200 Human dynamin-like protein interacts with the glycogen synth... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:9731200 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
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GO:0061629
RNA polymerase II-specific DNA-binding transcription factor binding
|
IPI
PMID:20864106 PTEN differentially regulates expressions of ICAM-1 and VCAM... |
KEEP AS NON CORE |
Summary: RNA polymerase II-specific DNA-binding transcription factor binding is retained as a non-core molecular-function annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0061629 (RNA polymerase II-specific DNA-binding transcription factor binding), the IPI annotation with qualifier enables from PMID:20864106 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0031625
ubiquitin protein ligase binding
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IPI
PMID:21118991 The EDD E3 ubiquitin ligase ubiquitinates and up-regulates b... |
KEEP AS NON CORE |
Summary: ubiquitin protein ligase binding is retained as a non-core molecular-function annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0031625 (ubiquitin protein ligase binding), the IPI annotation with qualifier enables from PMID:21118991 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0002039
p53 binding
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IDA
PMID:14744935 Endoplasmic reticulum stress induces p53 cytoplasmic localiz... |
KEEP AS NON CORE |
Summary: p53 binding is retained as a non-core molecular-function annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0002039 (p53 binding), the IDA annotation with qualifier enables from PMID:14744935 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0004674
protein serine/threonine kinase activity
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IDA
PMID:14744935 Endoplasmic reticulum stress induces p53 cytoplasmic localiz... |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation with qualifier enables from PMID:14744935 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005634
nucleus
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IDA
PMID:14744935 Endoplasmic reticulum stress induces p53 cytoplasmic localiz... |
ACCEPT |
Summary: nucleus is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005634 (nucleus), the IDA annotation with qualifier located_in from PMID:14744935 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005737
cytoplasm
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IDA
PMID:14744935 Endoplasmic reticulum stress induces p53 cytoplasmic localiz... |
ACCEPT |
Summary: cytoplasm is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005737 (cytoplasm), the IDA annotation with qualifier located_in from PMID:14744935 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0006983
ER overload response
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IDA
PMID:14744935 Endoplasmic reticulum stress induces p53 cytoplasmic localiz... |
KEEP AS NON CORE |
Summary: ER overload response is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0006983 (ER overload response), the IDA annotation with qualifier acts_upstream_of_or_within from PMID:14744935 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0018105
peptidyl-serine phosphorylation
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IDA
PMID:14744935 Endoplasmic reticulum stress induces p53 cytoplasmic localiz... |
ACCEPT |
Summary: peptidyl-serine phosphorylation is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0018105 (peptidyl-serine phosphorylation), the IDA annotation with qualifier acts_upstream_of_or_within from PMID:14744935 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0043066
negative regulation of apoptotic process
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IDA
PMID:14744935 Endoplasmic reticulum stress induces p53 cytoplasmic localiz... |
KEEP AS NON CORE |
Summary: negative regulation of apoptotic process is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0043066 (negative regulation of apoptotic process), the IDA annotation with qualifier acts_upstream_of_or_within from PMID:14744935 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0046827
positive regulation of protein export from nucleus
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IDA
PMID:14744935 Endoplasmic reticulum stress induces p53 cytoplasmic localiz... |
KEEP AS NON CORE |
Summary: positive regulation of protein export from nucleus is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0046827 (positive regulation of protein export from nucleus), the IDA annotation with qualifier acts_upstream_of_or_within from PMID:14744935 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0001837
epithelial to mesenchymal transition
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IMP
PMID:15448698 Dual regulation of Snail by GSK-3beta-mediated phosphorylati... |
KEEP AS NON CORE |
Summary: epithelial to mesenchymal transition is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0001837 (epithelial to mesenchymal transition), the IMP annotation with qualifier involved_in from PMID:15448698 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0005515
protein binding
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IPI
PMID:15448698 Dual regulation of Snail by GSK-3beta-mediated phosphorylati... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:15448698 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
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GO:0005634
nucleus
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IDA
PMID:15448698 Dual regulation of Snail by GSK-3beta-mediated phosphorylati... |
ACCEPT |
Summary: nucleus is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005634 (nucleus), the IDA annotation with qualifier located_in from PMID:15448698 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005737
cytoplasm
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IDA
PMID:15448698 Dual regulation of Snail by GSK-3beta-mediated phosphorylati... |
ACCEPT |
Summary: cytoplasm is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005737 (cytoplasm), the IDA annotation with qualifier located_in from PMID:15448698 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0016301
kinase activity
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IDA
PMID:15448698 Dual regulation of Snail by GSK-3beta-mediated phosphorylati... |
MODIFY |
Summary: kinase activity is directionally related to GSK3B biology but is not the best curation target; protein serine/threonine kinase activity better captures the specific supported function or process.
Reason: For GO:0016301 (kinase activity), the IDA annotation with qualifier enables from PMID:15448698 supports a relationship to GSK3B, but the current term is less precise than protein serine/threonine kinase activity for the evidence and for the synthesized core/non-core role of GSK3B. The MODIFY action preserves the biological intent while pointing curators to the more informative GO term.
Proposed replacements:
protein serine/threonine kinase activity
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GO:0050321
tau-protein kinase activity
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IDA
PMID:16365045 The low density lipoprotein receptor-related protein 6 inter... |
ACCEPT |
Summary: tau-protein kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0050321 (tau-protein kinase activity), the IDA annotation with qualifier enables from PMID:16365045 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0031333
negative regulation of protein-containing complex assembly
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IMP
PMID:16188939 The adenomatous polyposis coli protein (APC) exists in two d... |
KEEP AS NON CORE |
Summary: negative regulation of protein-containing complex assembly is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0031333 (negative regulation of protein-containing complex assembly), the IMP annotation with qualifier involved_in from PMID:16188939 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0005737
cytoplasm
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IDA
PMID:19038973 Identification of WNT/beta-CATENIN signaling pathway compone... |
ACCEPT |
Summary: cytoplasm is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005737 (cytoplasm), the IDA annotation with qualifier located_in from PMID:19038973 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0021766
hippocampus development
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IMP
PMID:19581563 Association of GSK3beta polymorphisms with brain structural ... |
KEEP AS NON CORE |
Summary: hippocampus development is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0021766 (hippocampus development), the IMP annotation with qualifier involved_in from PMID:19581563 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0071109
superior temporal gyrus development
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IMP
PMID:19581563 Association of GSK3beta polymorphisms with brain structural ... |
KEEP AS NON CORE |
Summary: superior temporal gyrus development is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0071109 (superior temporal gyrus development), the IMP annotation with qualifier involved_in from PMID:19581563 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0001954
positive regulation of cell-matrix adhesion
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IMP
PMID:18156211 Regulation of endothelial cell cytoskeletal reorganization b... |
KEEP AS NON CORE |
Summary: positive regulation of cell-matrix adhesion is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0001954 (positive regulation of cell-matrix adhesion), the IMP annotation with qualifier involved_in from PMID:18156211 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0030877
beta-catenin destruction complex
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IDA
PMID:16188939 The adenomatous polyposis coli protein (APC) exists in two d... |
ACCEPT |
Summary: beta-catenin destruction complex is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0030877 (beta-catenin destruction complex), the IDA annotation with qualifier part_of from PMID:16188939 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0045732
positive regulation of protein catabolic process
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IC
PMID:16188939 The adenomatous polyposis coli protein (APC) exists in two d... |
ACCEPT |
Summary: positive regulation of protein catabolic process is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0045732 (positive regulation of protein catabolic process), the IC annotation with qualifier involved_in from PMID:16188939 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005737
cytoplasm
|
IDA
PMID:18787224 Constitutive activation of the Wnt canonical pathway in mant... |
ACCEPT |
Summary: cytoplasm is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005737 (cytoplasm), the IDA annotation with qualifier located_in from PMID:18787224 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0004674
protein serine/threonine kinase activity
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IDA
PMID:11035810 Phosphorylation and inactivation of glycogen synthase kinase... |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation with qualifier enables from PMID:11035810 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0034236
protein kinase A catalytic subunit binding
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IPI
PMID:11035810 Phosphorylation and inactivation of glycogen synthase kinase... |
KEEP AS NON CORE |
Summary: protein kinase A catalytic subunit binding is retained as a non-core molecular-function annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0034236 (protein kinase A catalytic subunit binding), the IPI annotation with qualifier enables from PMID:11035810 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0004674
protein serine/threonine kinase activity
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IDA
PMID:8638126 Binding of GSK3beta to the APC-beta-catenin complex and regu... |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation with qualifier enables from PMID:8638126 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005977
glycogen metabolic process
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IDA
PMID:8638126 Binding of GSK3beta to the APC-beta-catenin complex and regu... |
ACCEPT |
Summary: glycogen metabolic process is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005977 (glycogen metabolic process), the IDA annotation with qualifier involved_in from PMID:8638126 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0008013
beta-catenin binding
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IPI
PMID:8638126 Binding of GSK3beta to the APC-beta-catenin complex and regu... |
ACCEPT |
Summary: beta-catenin binding is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0008013 (beta-catenin binding), the IPI annotation with qualifier enables from PMID:8638126 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0030877
beta-catenin destruction complex
|
IDA
PMID:8638126 Binding of GSK3beta to the APC-beta-catenin complex and regu... |
ACCEPT |
Summary: beta-catenin destruction complex is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0030877 (beta-catenin destruction complex), the IDA annotation with qualifier part_of from PMID:8638126 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0031334
positive regulation of protein-containing complex assembly
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IDA
PMID:8638126 Binding of GSK3beta to the APC-beta-catenin complex and regu... |
KEEP AS NON CORE |
Summary: positive regulation of protein-containing complex assembly is retained as a non-core biological-process annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0031334 (positive regulation of protein-containing complex assembly), the IDA annotation with qualifier involved_in from PMID:8638126 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
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GO:0004674
protein serine/threonine kinase activity
|
ISS
GO_REF:0000024 |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the ISS annotation with qualifier enables from GO_REF:0000024 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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GO:0005515
protein binding
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IPI
PMID:9482734 Axin, a negative regulator of the Wnt signaling pathway, for... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:9482734 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
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GO:0004674
protein serine/threonine kinase activity
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IDA
PMID:11104755 Substitution of a glycogen synthase kinase-3beta phosphoryla... |
ACCEPT |
Summary: protein serine/threonine kinase activity is retained as a core molecular-function annotation for GSK3B; it captures activity or binding specificity within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation with qualifier enables from PMID:11104755 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
|
|
GO:0018105
peptidyl-serine phosphorylation
|
IDA
PMID:11104755 Substitution of a glycogen synthase kinase-3beta phosphoryla... |
ACCEPT |
Summary: peptidyl-serine phosphorylation is retained as a core biological-process annotation for GSK3B; it captures process participation within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0018105 (peptidyl-serine phosphorylation), the IDA annotation with qualifier acts_upstream_of_or_within from PMID:11104755 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
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|
GO:0035556
intracellular signal transduction
|
IDA
PMID:14749367 Regulation of apoptosis by the Ft1 protein, a new modulator ... |
MARK AS OVER ANNOTATED |
Summary: intracellular signal transduction is marked over-annotated for GSK3B because this biological-process term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0035556 (intracellular signal transduction), the IDA annotation with qualifier acts_upstream_of_or_within from PMID:14749367 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
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|
GO:0005515
protein binding
|
IPI
PMID:9601641 Downregulation of beta-catenin by human Axin and its associa... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:9601641 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
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|
GO:0030877
beta-catenin destruction complex
|
IDA
PMID:9601641 Downregulation of beta-catenin by human Axin and its associa... |
ACCEPT |
Summary: beta-catenin destruction complex is retained as a core cellular-component/localization annotation for GSK3B; it captures site of action or component context within the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0030877 (beta-catenin destruction complex), the IDA annotation with qualifier part_of from PMID:9601641 is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. This action keeps the term because it provides a specific, evidence-backed kinase/substrate, pathway, or localization annotation rather than only a downstream phenotype or generic interaction label.
|
|
GO:0005515
protein binding
|
IPI
PMID:12927815 Molecular characterization of human ninein protein: two dist... |
MARK AS OVER ANNOTATED |
Summary: protein binding is marked over-annotated for GSK3B because this molecular-function term is too generic, interaction-map-like, or weakly informative relative to the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0005515 (protein binding), the IPI annotation with qualifier enables from PMID:12927815 may reflect a real assay result or interaction, but this GO term does not identify the specific kinase/substrate, pathway, or localization annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific annotations are present, so this is marked over-annotated rather than accepted as a core function.
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GO:0051059
NF-kappaB binding
|
IPI
PMID:15465828 Phosphorylation of serine 468 by GSK-3beta negatively regula... |
KEEP AS NON CORE |
Summary: NF-kappaB binding is retained as a non-core molecular-function annotation for GSK3B; it records a supported context, interaction, localization, or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites where these reactions occur.
Reason: For GO:0051059 (NF-kappaB binding), the IPI annotation with qualifier enables from PMID:15465828 supports retaining the annotation, but the term describes a context-specific outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core prevents broad pathway participation from being promoted to core function.
|
Q: Which GSK3B pathway annotations should be treated as central kinase/substrate biology versus pleiotropic downstream effects of a broadly connected kinase?
Q: For Alzheimer disease, should GSK3B curation emphasize tau phosphorylation and microtubule regulation, Wnt/beta-catenin signaling, insulin/glycogen metabolism, synaptic signaling, or all as separate non-equivalent branches?
Q: Which generic high-throughput protein-interaction annotations can be replaced by reproducible endogenous substrate, scaffold, or regulator-specific GO terms?
Experiment: Use endogenous GSK3B perturbation and phosphosite-specific rescue in human iPSC-derived neurons and glia, measuring tau phosphorylation/microtubule binding, beta-catenin degradation, glycogen/insulin signaling, synaptic phenotypes, and cell viability under amyloid or inflammatory stress.
Hypothesis: Alzheimer-relevant GSK3B effects depend on separable tau-phosphorylation and Wnt/beta-catenin substrate pools rather than global kinase abundance alone.
Type: substrate-resolved kinase perturbation assay
Experiment: Perform quantitative phosphoproteomics after acute GSK3B inhibition or analog-sensitive GSK3B mutation, then classify direct phosphosites by priming dependence and map them to tau, CTNNB1, GYS1, RICTOR, SNAI1, NFAT, and other candidate substrate pathways.
Hypothesis: Primed-substrate docking determines which GSK3B GO pathway outputs are direct functions versus secondary pathway consequences.
Type: acute kinase-substrate phosphoproteomics
Automated deep research was attempted with just deep-research-falcon human GSK3B --fallback perplexity-lite, but the run timed out before producing a deep-research file. This review therefore uses cached GOA publications, the UniProt record, Reactome-derived entries, and the PANTHER family fetch.
GSK3B encodes glycogen synthase kinase-3 beta, a constitutively active serine/threonine kinase in the GSK-3 family. UniProt describes it as a "Constitutively active protein kinase" that regulates glucose homeostasis, Wnt signaling, transcription factors, and microtubules, with broad substrate scope including glycogen synthase, beta-catenin, tau, APC/AXIN1, JUN, NFATC1, SNAI1, RICTOR, and other proteins [file:human/GSK3B/GSK3B-uniprot.txt "Constitutively active protein kinase"; file:human/GSK3B/GSK3B-uniprot.txt "Wnt signaling"; file:human/GSK3B/GSK3B-uniprot.txt "phosphorylating and inactivating glycogen synthase"]. PANTHER places GSK3B in PTHR24057:SF8, glycogen synthase kinase-3 beta.
The catalytic core is ATP-dependent protein serine/threonine kinase activity, including tau-specific kinase activity. UniProt catalytic reactions include "L-seryl-[protein] + ATP", "L-seryl-[tau protein] + ATP", and "L-threonyl-[tau protein] + ATP" [file:human/GSK3B/GSK3B-uniprot.txt "L-seryl-[protein] + ATP"; file:human/GSK3B/GSK3B-uniprot.txt "L-seryl-[tau protein] + ATP"; file:human/GSK3B/GSK3B-uniprot.txt "L-threonyl-[tau protein] + ATP"]. Activity is regulated by activating Tyr-216 phosphorylation and inhibitory Ser-9 phosphorylation [file:human/GSK3B/GSK3B-uniprot.txt "Activated by phosphorylation at Tyr-216"; file:human/GSK3B/GSK3B-uniprot.txt "inhibited by phosphorylation at Ser-9"].
Tau phosphorylation is a direct Alzheimer-relevant substrate branch. UniProt states that GSK3B phosphorylates MAPT/TAU and that tau is the principal component of Alzheimer neurofibrillary tangles [file:human/GSK3B/GSK3B-uniprot.txt "Phosphorylates MAPT/TAU on"; file:human/GSK3B/GSK3B-uniprot.txt "ability to bind and"; file:human/GSK3B/GSK3B-uniprot.txt "stabilize microtubules"]. Cho and Johnson report that primed GSK3beta phosphorylation of tau regulates "tau's ability to bind and stabilize microtubules" and that "GSK3beta plays a critical role" in that process [PMID:14690523 "tau's ability to bind and stabilize microtubules"; PMID:14690523 "GSK3beta plays a critical role"].
Wnt/beta-catenin regulation is a core signaling context for GSK3B. UniProt states that GSK3B "phosphorylates the N-terminus of CTNNB1 leading to its degradation" [file:human/GSK3B/GSK3B-uniprot.txt "phosphorylates the N-terminus of CTNNB1 leading to its degradation"]. Primary beta-catenin/APC work reports that APC binds GSK3 beta and that beta-catenin binding depends on GSK3 beta phosphorylation [PMID:8638126 "APC binds to another component of the WINGLESS pathway"; PMID:8638126 "phosphorylation by GSK3 beta"]. The beta-catenin phosphorylation/degradation paper supports the priming-kinase and GSK-3 sequence in Wnt/beta-catenin signaling [PMID:11955436 "Wnt regulation of beta-catenin degradation"; PMID:11955436 "subsequent GSK-3 phosphorylation"].
Many other GOA processes are credible but pleiotropic downstream outputs of this broad kinase. NFAT nuclear export is supported by the Science abstract saying "GSK-3 phosphorylates conserved serines" and "promotes nuclear exit" [PMID:9072970 "GSK-3 phosphorylates conserved serines"; PMID:9072970 "promotes nuclear exit"]. SNAI1/EMT regulation is supported by the Snail paper reporting "GSK-3beta binds to" and "phosphorylates Snail" [PMID:15448698 "GSK-3beta binds to"; PMID:15448698 "phosphorylates Snail"]. ER-stress/mTORC2 signaling is supported by the rictor paper reporting that GSK3B phosphorylates the "mTORC2 component rictor" [PMID:21343617 "mTORC2 component rictor"; PMID:21343617 "rictor at serine-1235"]. These branches should generally be kept as non-core pathway-specific consequences rather than treated as the defining function of GSK3B.
For curation, accept kinase activity, ATP binding, tau-protein kinase activity, protein phosphorylation/autophosphorylation, beta-catenin binding/destruction-complex/Wnt negative regulation, glycogen metabolic regulation, and core cytosol/cytoplasm/nuclear/plasma-membrane localizations. Keep substrate-specific and pathway-specific outputs as non-core unless they directly represent central kinase/substrate logic. Mark generic protein binding and broad uninformative process terms as over-annotated.
The second-pass audit confirmed the existing GSK3B review and manual reference metadata. No annotation action changes were needed: GSK3B remains curated as a broadly acting ATP-dependent serine/threonine kinase with core tau, beta-catenin/Wnt, and glycogen-synthase substrate logic, while NFAT, Snail/EMT, mTORC2/rictor, stress, apoptotic, developmental, and other pathway outputs remain non-core unless they directly express the kinase/substrate mechanism.
id: P49841
gene_symbol: GSK3B
product_type: PROTEIN
status: COMPLETE
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: 'GSK3B encodes glycogen synthase kinase-3 beta, a constitutively active,
ATP-dependent serine/threonine protein kinase regulated by inhibitory Ser-9 and
activating Tyr-216 phosphorylation. GSK3B phosphorylates primed and unprimed protein
substrates across glucose/glycogen metabolism, canonical Wnt/beta-catenin signaling,
transcription-factor regulation, protein ubiquitination/degradation, autophagy,
apoptosis, neuronal polarity, microtubule regulation, and tau biology. Core disease-relevant
functions include tau-protein kinase activity that reduces tau microtubule binding,
negative regulation of canonical Wnt signaling through the beta-catenin destruction
complex, and insulin-linked negative control of glycogen synthesis.'
alternative_products:
- name: 1 (GSK-3beta1)
id: P49841-1
- name: 2 (GSK-3beta2, neuron-specific)
id: P49841-2
sequence_note: VSP_004790
existing_annotations:
- term:
id: GO:0030424
label: axon
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: >-
axon is retained as a non-core cellular-component/localization annotation for
GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0030424 (axon), the IBA annotation with qualifier is_active_in from GO_REF:0000033
supports retaining the annotation, but the term describes a context-specific
outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core
prevents broad pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0030425
label: dendrite
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: >-
dendrite is retained as a non-core cellular-component/localization annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0030425 (dendrite), the IBA annotation with qualifier is_active_in from
GO_REF:0000033 supports retaining the annotation, but the term describes a context-specific
outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core
prevents broad pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005634
label: nucleus
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: >-
nucleus is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005634 (nucleus), the IBA annotation with qualifier is_active_in from
GO_REF:0000033 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: >-
cytoplasm is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005737 (cytoplasm), the IBA annotation with qualifier is_active_in from
GO_REF:0000033 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the IBA annotation with qualifier is_active_in from
GO_REF:0000033 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0030154
label: cell differentiation
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: >-
cell differentiation is retained as a non-core biological-process annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0030154 (cell differentiation), the IBA annotation with qualifier involved_in
from GO_REF:0000033 supports retaining the annotation, but the term describes
a context-specific outcome or peripheral branch rather than the principal GSK3B
function: ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
Keeping it as non-core prevents broad pathway participation from being promoted
to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0050321
label: tau-protein kinase activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: >-
tau-protein kinase activity is retained as a core molecular-function annotation
for GSK3B; it captures activity or binding specificity within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0050321 (tau-protein kinase activity), the IBA annotation with qualifier
enables from GO_REF:0000033 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0090090
label: negative regulation of canonical Wnt signaling pathway
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: >-
negative regulation of canonical Wnt signaling pathway is retained as a core
biological-process annotation for GSK3B; it captures process participation within
the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0090090 (negative regulation of canonical Wnt signaling pathway), the
IBA annotation with qualifier involved_in from GO_REF:0000033 is consistent
with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of
primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau,
and protein-turnover substrates. This action keeps the term because it provides
a specific, evidence-backed kinase/substrate, pathway, or localization annotation
rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0032007
label: negative regulation of TOR signaling
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: >-
negative regulation of TOR signaling is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0032007 (negative regulation of TOR signaling), the IBA annotation with
qualifier involved_in from GO_REF:0000033 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0010508
label: positive regulation of autophagy
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: >-
positive regulation of autophagy is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0010508 (positive regulation of autophagy), the IBA annotation with qualifier
involved_in from GO_REF:0000033 supports retaining the annotation, but the term
describes a context-specific outcome or peripheral branch rather than the principal
GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. Keeping it as non-core prevents broad pathway participation from
being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0043525
label: positive regulation of neuron apoptotic process
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: >-
positive regulation of neuron apoptotic process is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0043525 (positive regulation of neuron apoptotic process), the IBA annotation
with qualifier involved_in from GO_REF:0000033 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0032436
label: positive regulation of proteasomal ubiquitin-dependent protein
catabolic process
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: >-
positive regulation of proteasomal ubiquitin-dependent protein catabolic process
is retained as a core biological-process annotation for GSK3B; it captures process
participation within the synthesized core biology: GSK3B catalytic kinase activity,
substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: ACCEPT
reason: >-
For GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein
catabolic process), the IBA annotation with qualifier involved_in from GO_REF:0000033
is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0070507
label: regulation of microtubule cytoskeleton organization
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: >-
regulation of microtubule cytoskeleton organization is retained as a core biological-process
annotation for GSK3B; it captures process participation within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0070507 (regulation of microtubule cytoskeleton organization), the IBA
annotation with qualifier involved_in from GO_REF:0000033 is consistent with
GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed
protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and
protein-turnover substrates. This action keeps the term because it provides
a specific, evidence-backed kinase/substrate, pathway, or localization annotation
rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0010975
label: regulation of neuron projection development
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: >-
regulation of neuron projection development is retained as a core biological-process
annotation for GSK3B; it captures process participation within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0010975 (regulation of neuron projection development), the IBA annotation
with qualifier involved_in from GO_REF:0000033 is consistent with GSK3B's core
role in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0098978
label: glutamatergic synapse
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: >-
glutamatergic synapse is retained as a non-core cellular-component/localization
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0098978 (glutamatergic synapse), the IBA annotation with qualifier is_active_in
from GO_REF:0000033 supports retaining the annotation, but the term describes
a context-specific outcome or peripheral branch rather than the principal GSK3B
function: ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
Keeping it as non-core prevents broad pathway participation from being promoted
to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0008286
label: insulin receptor signaling pathway
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: >-
insulin receptor signaling pathway is retained as a core biological-process
annotation for GSK3B; it captures process participation within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0008286 (insulin receptor signaling pathway), the IBA annotation with
qualifier involved_in from GO_REF:0000033 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0008013
label: beta-catenin binding
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: >-
beta-catenin binding is retained as a core molecular-function annotation for
GSK3B; it captures activity or binding specificity within the synthesized core
biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0008013 (beta-catenin binding), the IBA annotation with qualifier enables
from GO_REF:0000033 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0030877
label: beta-catenin destruction complex
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: part_of
review:
summary: >-
beta-catenin destruction complex is retained as a core cellular-component/localization
annotation for GSK3B; it captures site of action or component context within
the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0030877 (beta-catenin destruction complex), the IBA annotation with qualifier
part_of from GO_REF:0000033 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004672
label: protein kinase activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: enables
review:
summary: >-
protein kinase activity is directionally related to GSK3B biology but is not
the best curation target; protein serine/threonine kinase activity better captures
the specific supported function or process.
action: MODIFY
reason: >-
For GO:0004672 (protein kinase activity), the IEA annotation with qualifier
enables from GO_REF:0000120 supports a relationship to GSK3B, but the current
term is less precise than protein serine/threonine kinase activity for the evidence
and for the synthesized core/non-core role of GSK3B. The MODIFY action preserves
the biological intent while pointing curators to the more informative GO term.
proposed_replacement_terms:
- id: GO:0004674
label: protein serine/threonine kinase activity
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the IEA annotation
with qualifier enables from GO_REF:0000120 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005524
label: ATP binding
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: enables
review:
summary: >-
ATP binding is retained as a core molecular-function annotation for GSK3B; it
captures activity or binding specificity within the synthesized core biology:
GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005524 (ATP binding), the IEA annotation with qualifier enables from
GO_REF:0000002 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005634
label: nucleus
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: located_in
review:
summary: >-
nucleus is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005634 (nucleus), the IEA annotation with qualifier located_in from
GO_REF:0000120 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: >-
cytoplasm is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005737 (cytoplasm), the IEA annotation with qualifier located_in from
GO_REF:0000044 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005886
label: plasma membrane
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: >-
plasma membrane is retained as a core cellular-component/localization annotation
for GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005886 (plasma membrane), the IEA annotation with qualifier located_in
from GO_REF:0000044 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0009968
label: negative regulation of signal transduction
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: >-
negative regulation of signal transduction is marked over-annotated for GSK3B
because this biological-process term is too generic, interaction-map-like, or
weakly informative relative to the gene-specific biology: GSK3B catalytic kinase
activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling,
glycogen/insulin regulation, tau phosphorylation, protein-turnover control,
and the cytosolic/nuclear sites where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0009968 (negative regulation of signal transduction), the IEA annotation
with qualifier involved_in from GO_REF:0000117 may reflect a real assay result
or interaction, but this GO term does not identify the specific kinase/substrate,
pathway, or localization annotation that explains GSK3B's role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific
annotations are present, so this is marked over-annotated rather than accepted
as a core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0019082
label: viral protein processing
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: >-
viral protein processing is retained as a non-core biological-process annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0019082 (viral protein processing), the IEA annotation with qualifier
involved_in from GO_REF:0000117 supports retaining the annotation, but the term
describes a context-specific outcome or peripheral branch rather than the principal
GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. Keeping it as non-core prevents broad pathway participation from
being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0031398
label: positive regulation of protein ubiquitination
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: >-
positive regulation of protein ubiquitination is retained as a core biological-process
annotation for GSK3B; it captures process participation within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0031398 (positive regulation of protein ubiquitination), the IEA annotation
with qualifier involved_in from GO_REF:0000117 is consistent with GSK3B's core
role in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0032436
label: positive regulation of proteasomal ubiquitin-dependent protein
catabolic process
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: >-
positive regulation of proteasomal ubiquitin-dependent protein catabolic process
is retained as a core biological-process annotation for GSK3B; it captures process
participation within the synthesized core biology: GSK3B catalytic kinase activity,
substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: ACCEPT
reason: >-
For GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein
catabolic process), the IEA annotation with qualifier involved_in from GO_REF:0000117
is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0034236
label: protein kinase A catalytic subunit binding
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: enables
review:
summary: >-
protein kinase A catalytic subunit binding is retained as a non-core molecular-function
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0034236 (protein kinase A catalytic subunit binding), the IEA annotation
with qualifier enables from GO_REF:0000117 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0050321
label: tau-protein kinase activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: enables
review:
summary: >-
tau-protein kinase activity is retained as a core molecular-function annotation
for GSK3B; it captures activity or binding specificity within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0050321 (tau-protein kinase activity), the IEA annotation with qualifier
enables from GO_REF:0000120 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0098793
label: presynapse
evidence_type: IEA
original_reference_id: GO_REF:0000108
qualifier: located_in
review:
summary: >-
presynapse is retained as a non-core cellular-component/localization annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0098793 (presynapse), the IEA annotation with qualifier located_in from
GO_REF:0000108 supports retaining the annotation, but the term describes a context-specific
outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core
prevents broad pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:2000077
label: negative regulation of type B pancreatic cell development
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: >-
negative regulation of type B pancreatic cell development is retained as a non-core
biological-process annotation for GSK3B; it records a supported context, interaction,
localization, or pathway branch that is secondary to GSK3B catalytic kinase
activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling,
glycogen/insulin regulation, tau phosphorylation, protein-turnover control,
and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:2000077 (negative regulation of type B pancreatic cell development),
the IEA annotation with qualifier involved_in from GO_REF:0000117 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:10481074
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:10481074 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:11004522
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:11004522 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:11035810
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:11035810 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:11738041
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:11738041 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:12421363
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:12421363 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:12434148
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:12434148 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:14744935
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:14744935 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:15147888
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:15147888 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:15752768
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:15752768 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16282323
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:16282323 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16365045
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:16365045 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16890161
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:16890161 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:17078951
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:17078951 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:17139249
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:17139249 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:17317006
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:17317006 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:17318191
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:17318191 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:17510365
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:17510365 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:17601533
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:17601533 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:18045539
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:18045539 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:18505846
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:18505846 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:18687691
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:18687691 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:19131971
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:19131971 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:19202075
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:19202075 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:19249679
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:19249679 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:19303846
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:19303846 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:19411070
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:19411070 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:19759537
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:19759537 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:20080667
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:20080667 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:20368287
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:20368287 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:20389281
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:20389281 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:20856200
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:20856200 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:21118991
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:21118991 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:21217772
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:21217772 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:21242974
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:21242974 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:21743491
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:21743491 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:21900206
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:21900206 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:21985244
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:21985244 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:21988832
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:21988832 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:22470507
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:22470507 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:22682247
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:22682247 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:22699938
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:22699938 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:22773187
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:22773187 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:23010592
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:23010592 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:23455922
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:23455922 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:23602568
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:23602568 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:24165324
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:24165324 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:24879152
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:24879152 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:24976009
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:24976009 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:25241761
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:25241761 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:26496610
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:26496610 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:26618561
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:26618561 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:27601169
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:27601169 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:29568061
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:29568061 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:31640277
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:31640277 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:32707033
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:32707033 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:33248025
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:33248025 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:33961781
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:33961781 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:34232536
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:34232536 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:35063084
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:35063084 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:35271311
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:35271311 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:35512704
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:35512704 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:8638126
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:8638126 may reflect a real assay result or interaction, but this GO
term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005829
label: cytosol
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the IEA annotation with qualifier located_in from
GO_REF:0000107 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0007127
label: meiosis I
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
meiosis I is retained as a non-core biological-process annotation for GSK3B;
it records a supported context, interaction, localization, or pathway branch
that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0007127 (meiosis I), the IEA annotation with qualifier involved_in from
GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific
outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core
prevents broad pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0007623
label: circadian rhythm
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
circadian rhythm is retained as a non-core biological-process annotation for
GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0007623 (circadian rhythm), the IEA annotation with qualifier involved_in
from GO_REF:0000107 supports retaining the annotation, but the term describes
a context-specific outcome or peripheral branch rather than the principal GSK3B
function: ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
Keeping it as non-core prevents broad pathway participation from being promoted
to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0008013
label: beta-catenin binding
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: enables
review:
summary: >-
beta-catenin binding is retained as a core molecular-function annotation for
GSK3B; it captures activity or binding specificity within the synthesized core
biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0008013 (beta-catenin binding), the IEA annotation with qualifier enables
from GO_REF:0000107 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0008286
label: insulin receptor signaling pathway
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
insulin receptor signaling pathway is retained as a core biological-process
annotation for GSK3B; it captures process participation within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0008286 (insulin receptor signaling pathway), the IEA annotation with
qualifier involved_in from GO_REF:0000107 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0010508
label: positive regulation of autophagy
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
positive regulation of autophagy is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0010508 (positive regulation of autophagy), the IEA annotation with qualifier
involved_in from GO_REF:0000107 supports retaining the annotation, but the term
describes a context-specific outcome or peripheral branch rather than the principal
GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. Keeping it as non-core prevents broad pathway participation from
being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0010628
label: positive regulation of gene expression
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
positive regulation of gene expression is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0010628 (positive regulation of gene expression), the IEA annotation
with qualifier involved_in from GO_REF:0000107 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0010954
label: positive regulation of protein processing
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
positive regulation of protein processing is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0010954 (positive regulation of protein processing), the IEA annotation
with qualifier involved_in from GO_REF:0000107 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0014069
label: postsynaptic density
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: located_in
review:
summary: >-
postsynaptic density is retained as a non-core cellular-component/localization
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0014069 (postsynaptic density), the IEA annotation with qualifier located_in
from GO_REF:0000107 supports retaining the annotation, but the term describes
a context-specific outcome or peripheral branch rather than the principal GSK3B
function: ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
Keeping it as non-core prevents broad pathway participation from being promoted
to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0019901
label: protein kinase binding
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: enables
review:
summary: >-
protein kinase binding is retained as a non-core molecular-function annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0019901 (protein kinase binding), the IEA annotation with qualifier enables
from GO_REF:0000107 supports retaining the annotation, but the term describes
a context-specific outcome or peripheral branch rather than the principal GSK3B
function: ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
Keeping it as non-core prevents broad pathway participation from being promoted
to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0030426
label: growth cone
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: located_in
review:
summary: >-
growth cone is retained as a non-core cellular-component/localization annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0030426 (growth cone), the IEA annotation with qualifier located_in from
GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific
outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core
prevents broad pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0030877
label: beta-catenin destruction complex
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: part_of
review:
summary: >-
beta-catenin destruction complex is retained as a core cellular-component/localization
annotation for GSK3B; it captures site of action or component context within
the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0030877 (beta-catenin destruction complex), the IEA annotation with qualifier
part_of from GO_REF:0000120 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0031663
label: lipopolysaccharide-mediated signaling pathway
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
lipopolysaccharide-mediated signaling pathway is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0031663 (lipopolysaccharide-mediated signaling pathway), the IEA annotation
with qualifier involved_in from GO_REF:0000107 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0032007
label: negative regulation of TOR signaling
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
negative regulation of TOR signaling is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0032007 (negative regulation of TOR signaling), the IEA annotation with
qualifier involved_in from GO_REF:0000107 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0032481
label: positive regulation of type I interferon production
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
positive regulation of type I interferon production is retained as a non-core
biological-process annotation for GSK3B; it records a supported context, interaction,
localization, or pathway branch that is secondary to GSK3B catalytic kinase
activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling,
glycogen/insulin regulation, tau phosphorylation, protein-turnover control,
and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0032481 (positive regulation of type I interferon production), the IEA
annotation with qualifier involved_in from GO_REF:0000107 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0032886
label: regulation of microtubule-based process
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
regulation of microtubule-based process is retained as a core biological-process
annotation for GSK3B; it captures process participation within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0032886 (regulation of microtubule-based process), the IEA annotation
with qualifier involved_in from GO_REF:0000107 is consistent with GSK3B's core
role in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0036016
label: cellular response to interleukin-3
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
cellular response to interleukin-3 is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0036016 (cellular response to interleukin-3), the IEA annotation with
qualifier involved_in from GO_REF:0000107 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0042752
label: regulation of circadian rhythm
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
regulation of circadian rhythm is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0042752 (regulation of circadian rhythm), the IEA annotation with qualifier
involved_in from GO_REF:0000107 supports retaining the annotation, but the term
describes a context-specific outcome or peripheral branch rather than the principal
GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. Keeping it as non-core prevents broad pathway participation from
being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0042981
label: regulation of apoptotic process
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
regulation of apoptotic process is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0042981 (regulation of apoptotic process), the IEA annotation with qualifier
involved_in from GO_REF:0000107 supports retaining the annotation, but the term
describes a context-specific outcome or peripheral branch rather than the principal
GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. Keeping it as non-core prevents broad pathway participation from
being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0043025
label: neuronal cell body
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: located_in
review:
summary: >-
neuronal cell body is retained as a non-core cellular-component/localization
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0043025 (neuronal cell body), the IEA annotation with qualifier located_in
from GO_REF:0000107 supports retaining the annotation, but the term describes
a context-specific outcome or peripheral branch rather than the principal GSK3B
function: ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
Keeping it as non-core prevents broad pathway participation from being promoted
to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0043198
label: dendritic shaft
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: located_in
review:
summary: >-
dendritic shaft is retained as a non-core cellular-component/localization annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0043198 (dendritic shaft), the IEA annotation with qualifier located_in
from GO_REF:0000107 supports retaining the annotation, but the term describes
a context-specific outcome or peripheral branch rather than the principal GSK3B
function: ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
Keeping it as non-core prevents broad pathway participation from being promoted
to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0043491
label: phosphatidylinositol 3-kinase/protein kinase B signal transduction
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
phosphatidylinositol 3-kinase/protein kinase B signal transduction is retained
as a non-core biological-process annotation for GSK3B; it records a supported
context, interaction, localization, or pathway branch that is secondary to GSK3B
catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex
signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover
control, and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0043491 (phosphatidylinositol 3-kinase/protein kinase B signal transduction),
the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0044297
label: cell body
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: located_in
review:
summary: >-
cell body is retained as a non-core cellular-component/localization annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0044297 (cell body), the IEA annotation with qualifier located_in from
GO_REF:0000107 supports retaining the annotation, but the term describes a context-specific
outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core
prevents broad pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0045719
label: negative regulation of glycogen biosynthetic process
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: involved_in
review:
summary: >-
negative regulation of glycogen biosynthetic process is retained as a core biological-process
annotation for GSK3B; it captures process participation within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0045719 (negative regulation of glycogen biosynthetic process), the IEA
annotation with qualifier involved_in from GO_REF:0000120 is consistent with
GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed
protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and
protein-turnover substrates. This action keeps the term because it provides
a specific, evidence-backed kinase/substrate, pathway, or localization annotation
rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0045724
label: positive regulation of cilium assembly
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
positive regulation of cilium assembly is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0045724 (positive regulation of cilium assembly), the IEA annotation
with qualifier involved_in from GO_REF:0000107 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0045879
label: negative regulation of smoothened signaling pathway
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
negative regulation of smoothened signaling pathway is retained as a non-core
biological-process annotation for GSK3B; it records a supported context, interaction,
localization, or pathway branch that is secondary to GSK3B catalytic kinase
activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling,
glycogen/insulin regulation, tau phosphorylation, protein-turnover control,
and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0045879 (negative regulation of smoothened signaling pathway), the IEA
annotation with qualifier involved_in from GO_REF:0000107 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0048471
label: perinuclear region of cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: located_in
review:
summary: >-
perinuclear region of cytoplasm is retained as a non-core cellular-component/localization
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0048471 (perinuclear region of cytoplasm), the IEA annotation with qualifier
located_in from GO_REF:0000107 supports retaining the annotation, but the term
describes a context-specific outcome or peripheral branch rather than the principal
GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. Keeping it as non-core prevents broad pathway participation from
being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0070059
label: intrinsic apoptotic signaling pathway in response to endoplasmic
reticulum stress
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress
is retained as a non-core biological-process annotation for GSK3B; it records
a supported context, interaction, localization, or pathway branch that is secondary
to GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0070059 (intrinsic apoptotic signaling pathway in response to endoplasmic
reticulum stress), the IEA annotation with qualifier involved_in from GO_REF:0000107
supports retaining the annotation, but the term describes a context-specific
outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core
prevents broad pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0070840
label: dynein complex binding
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: enables
review:
summary: >-
dynein complex binding is retained as a non-core molecular-function annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0070840 (dynein complex binding), the IEA annotation with qualifier enables
from GO_REF:0000107 supports retaining the annotation, but the term describes
a context-specific outcome or peripheral branch rather than the principal GSK3B
function: ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
Keeping it as non-core prevents broad pathway participation from being promoted
to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0071385
label: cellular response to glucocorticoid stimulus
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
cellular response to glucocorticoid stimulus is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0071385 (cellular response to glucocorticoid stimulus), the IEA annotation
with qualifier involved_in from GO_REF:0000107 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0072687
label: meiotic spindle
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: is_active_in
review:
summary: >-
meiotic spindle is retained as a non-core cellular-component/localization annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0072687 (meiotic spindle), the IEA annotation with qualifier is_active_in
from GO_REF:0000107 supports retaining the annotation, but the term describes
a context-specific outcome or peripheral branch rather than the principal GSK3B
function: ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
Keeping it as non-core prevents broad pathway participation from being promoted
to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0090090
label: negative regulation of canonical Wnt signaling pathway
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
negative regulation of canonical Wnt signaling pathway is retained as a core
biological-process annotation for GSK3B; it captures process participation within
the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0090090 (negative regulation of canonical Wnt signaling pathway), the
IEA annotation with qualifier involved_in from GO_REF:0000107 is consistent
with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of
primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau,
and protein-turnover substrates. This action keeps the term because it provides
a specific, evidence-backed kinase/substrate, pathway, or localization annotation
rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0097191
label: extrinsic apoptotic signaling pathway
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
extrinsic apoptotic signaling pathway is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0097191 (extrinsic apoptotic signaling pathway), the IEA annotation with
qualifier involved_in from GO_REF:0000107 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0097192
label: extrinsic apoptotic signaling pathway in absence of ligand
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
extrinsic apoptotic signaling pathway in absence of ligand is retained as a
non-core biological-process annotation for GSK3B; it records a supported context,
interaction, localization, or pathway branch that is secondary to GSK3B catalytic
kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex
signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover
control, and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0097192 (extrinsic apoptotic signaling pathway in absence of ligand),
the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0098978
label: glutamatergic synapse
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: is_active_in
review:
summary: >-
glutamatergic synapse is retained as a non-core cellular-component/localization
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0098978 (glutamatergic synapse), the IEA annotation with qualifier is_active_in
from GO_REF:0000107 supports retaining the annotation, but the term describes
a context-specific outcome or peripheral branch rather than the principal GSK3B
function: ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
Keeping it as non-core prevents broad pathway participation from being promoted
to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0106310
label: protein serine kinase activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: enables
review:
summary: >-
protein serine kinase activity is retained as a core molecular-function annotation
for GSK3B; it captures activity or binding specificity within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0106310 (protein serine kinase activity), the IEA annotation with qualifier
enables from GO_REF:0000120 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:1900026
label: positive regulation of substrate adhesion-dependent cell spreading
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
positive regulation of substrate adhesion-dependent cell spreading is retained
as a non-core biological-process annotation for GSK3B; it records a supported
context, interaction, localization, or pathway branch that is secondary to GSK3B
catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex
signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover
control, and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:1900026 (positive regulation of substrate adhesion-dependent cell spreading),
the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:1900271
label: regulation of long-term synaptic potentiation
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
regulation of long-term synaptic potentiation is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:1900271 (regulation of long-term synaptic potentiation), the IEA annotation
with qualifier involved_in from GO_REF:0000107 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:1901030
label: positive regulation of mitochondrial outer membrane permeabilization
involved in apoptotic signaling pathway
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
positive regulation of mitochondrial outer membrane permeabilization involved
in apoptotic signaling pathway is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:1901030 (positive regulation of mitochondrial outer membrane permeabilization
involved in apoptotic signaling pathway), the IEA annotation with qualifier
involved_in from GO_REF:0000107 supports retaining the annotation, but the term
describes a context-specific outcome or peripheral branch rather than the principal
GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. Keeping it as non-core prevents broad pathway participation from
being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:1903566
label: positive regulation of protein localization to cilium
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
positive regulation of protein localization to cilium is retained as a non-core
biological-process annotation for GSK3B; it records a supported context, interaction,
localization, or pathway branch that is secondary to GSK3B catalytic kinase
activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling,
glycogen/insulin regulation, tau phosphorylation, protein-turnover control,
and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:1903566 (positive regulation of protein localization to cilium), the
IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:1904780
label: negative regulation of protein localization to centrosome
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
negative regulation of protein localization to centrosome is retained as a non-core
biological-process annotation for GSK3B; it records a supported context, interaction,
localization, or pathway branch that is secondary to GSK3B catalytic kinase
activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling,
glycogen/insulin regulation, tau phosphorylation, protein-turnover control,
and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:1904780 (negative regulation of protein localization to centrosome),
the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:1990904
label: ribonucleoprotein complex
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: part_of
review:
summary: >-
ribonucleoprotein complex is retained as a non-core cellular-component/localization
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:1990904 (ribonucleoprotein complex), the IEA annotation with qualifier
part_of from GO_REF:0000107 supports retaining the annotation, but the term
describes a context-specific outcome or peripheral branch rather than the principal
GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. Keeping it as non-core prevents broad pathway participation from
being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:1990909
label: Wnt signalosome
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: part_of
review:
summary: >-
Wnt signalosome is retained as a core cellular-component/localization annotation
for GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:1990909 (Wnt signalosome), the IEA annotation with qualifier part_of
from GO_REF:0000107 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:2000727
label: positive regulation of cardiac muscle cell differentiation
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: >-
positive regulation of cardiac muscle cell differentiation is retained as a
non-core biological-process annotation for GSK3B; it records a supported context,
interaction, localization, or pathway branch that is secondary to GSK3B catalytic
kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex
signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover
control, and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:2000727 (positive regulation of cardiac muscle cell differentiation),
the IEA annotation with qualifier involved_in from GO_REF:0000107 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: IDA
original_reference_id: PMID:40274799
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation
with qualifier enables from PMID:40274799 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0060070
label: canonical Wnt signaling pathway
evidence_type: TAS
original_reference_id: Reactome:R-HSA-4641262
qualifier: involved_in
review:
summary: >-
canonical Wnt signaling pathway is retained as a core biological-process annotation
for GSK3B; it captures process participation within the synthesized core biology:
GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0060070 (canonical Wnt signaling pathway), the TAS annotation with qualifier
involved_in from Reactome:R-HSA-4641262 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:1900034
label: regulation of cellular response to heat
evidence_type: TAS
original_reference_id: Reactome:R-HSA-3371453
qualifier: involved_in
review:
summary: >-
regulation of cellular response to heat is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:1900034 (regulation of cellular response to heat), the TAS annotation
with qualifier involved_in from Reactome:R-HSA-3371453 supports retaining the
annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-195283
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation
with qualifier enables from Reactome:R-HSA-195283 is consistent with GSK3B's
core role in ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. This action keeps the term because it provides a specific, evidence-backed
kinase/substrate, pathway, or localization annotation rather than only a downstream
phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-195287
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation
with qualifier enables from Reactome:R-HSA-195287 is consistent with GSK3B's
core role in ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. This action keeps the term because it provides a specific, evidence-backed
kinase/substrate, pathway, or localization annotation rather than only a downstream
phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-195300
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation
with qualifier enables from Reactome:R-HSA-195300 is consistent with GSK3B's
core role in ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. This action keeps the term because it provides a specific, evidence-backed
kinase/substrate, pathway, or localization annotation rather than only a downstream
phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-201677
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation
with qualifier enables from Reactome:R-HSA-201677 is consistent with GSK3B's
core role in ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. This action keeps the term because it provides a specific, evidence-backed
kinase/substrate, pathway, or localization annotation rather than only a downstream
phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-3371435
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation
with qualifier enables from Reactome:R-HSA-3371435 is consistent with GSK3B's
core role in ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. This action keeps the term because it provides a specific, evidence-backed
kinase/substrate, pathway, or localization annotation rather than only a downstream
phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-399951
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation
with qualifier enables from Reactome:R-HSA-399951 is consistent with GSK3B's
core role in ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. This action keeps the term because it provides a specific, evidence-backed
kinase/substrate, pathway, or localization annotation rather than only a downstream
phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5610732
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation
with qualifier enables from Reactome:R-HSA-5610732 is consistent with GSK3B's
core role in ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. This action keeps the term because it provides a specific, evidence-backed
kinase/substrate, pathway, or localization annotation rather than only a downstream
phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9683664
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation
with qualifier enables from Reactome:R-HSA-9683664 is consistent with GSK3B's
core role in ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. This action keeps the term because it provides a specific, evidence-backed
kinase/substrate, pathway, or localization annotation rather than only a downstream
phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9729260
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation
with qualifier enables from Reactome:R-HSA-9729260 is consistent with GSK3B's
core role in ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. This action keeps the term because it provides a specific, evidence-backed
kinase/substrate, pathway, or localization annotation rather than only a downstream
phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9762094
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation
with qualifier enables from Reactome:R-HSA-9762094 is consistent with GSK3B's
core role in ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. This action keeps the term because it provides a specific, evidence-backed
kinase/substrate, pathway, or localization annotation rather than only a downstream
phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9824995
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation
with qualifier enables from Reactome:R-HSA-9824995 is consistent with GSK3B's
core role in ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. This action keeps the term because it provides a specific, evidence-backed
kinase/substrate, pathway, or localization annotation rather than only a downstream
phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9824999
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation
with qualifier enables from Reactome:R-HSA-9824999 is consistent with GSK3B's
core role in ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. This action keeps the term because it provides a specific, evidence-backed
kinase/substrate, pathway, or localization annotation rather than only a downstream
phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9929360
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation
with qualifier enables from Reactome:R-HSA-9929360 is consistent with GSK3B's
core role in ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. This action keeps the term because it provides a specific, evidence-backed
kinase/substrate, pathway, or localization annotation rather than only a downstream
phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9943675
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation
with qualifier enables from Reactome:R-HSA-9943675 is consistent with GSK3B's
core role in ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. This action keeps the term because it provides a specific, evidence-backed
kinase/substrate, pathway, or localization annotation rather than only a downstream
phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: TAS
original_reference_id: Reactome:R-NUL-209146
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation
with qualifier enables from Reactome:R-NUL-209146 is consistent with GSK3B's
core role in ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. This action keeps the term because it provides a specific, evidence-backed
kinase/substrate, pathway, or localization annotation rather than only a downstream
phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: TAS
original_reference_id: Reactome:R-NUL-9008636
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the TAS annotation
with qualifier enables from Reactome:R-NUL-9008636 is consistent with GSK3B's
core role in ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. This action keeps the term because it provides a specific, evidence-backed
kinase/substrate, pathway, or localization annotation rather than only a downstream
phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:12223487
qualifier: located_in
review:
summary: >-
nucleus is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005634 (nucleus), the IDA annotation with qualifier located_in from
PMID:12223487 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:12223487
qualifier: located_in
review:
summary: >-
cytoplasm is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005737 (cytoplasm), the IDA annotation with qualifier located_in from
PMID:12223487 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0030877
label: beta-catenin destruction complex
evidence_type: NAS
original_reference_id: PMID:9601641
qualifier: part_of
review:
summary: >-
beta-catenin destruction complex is retained as a core cellular-component/localization
annotation for GSK3B; it captures site of action or component context within
the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0030877 (beta-catenin destruction complex), the NAS annotation with qualifier
part_of from PMID:9601641 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0043161
label: proteasome-mediated ubiquitin-dependent protein catabolic process
evidence_type: NAS
original_reference_id: PMID:9601641
qualifier: involved_in
review:
summary: >-
proteasome-mediated ubiquitin-dependent protein catabolic process is retained
as a core biological-process annotation for GSK3B; it captures process participation
within the synthesized core biology: GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: ACCEPT
reason: >-
For GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process),
the NAS annotation with qualifier involved_in from PMID:9601641 is consistent
with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of
primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau,
and protein-turnover substrates. This action keeps the term because it provides
a specific, evidence-backed kinase/substrate, pathway, or localization annotation
rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0046825
label: regulation of protein export from nucleus
evidence_type: IDA
original_reference_id: PMID:12223487
qualifier: involved_in
review:
summary: >-
regulation of protein export from nucleus is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0046825 (regulation of protein export from nucleus), the IDA annotation
with qualifier involved_in from PMID:12223487 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0060070
label: canonical Wnt signaling pathway
evidence_type: IDA
original_reference_id: PMID:10428961
qualifier: involved_in
review:
summary: >-
canonical Wnt signaling pathway is retained as a core biological-process annotation
for GSK3B; it captures process participation within the synthesized core biology:
GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0060070 (canonical Wnt signaling pathway), the IDA annotation with qualifier
involved_in from PMID:10428961 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004672
label: protein kinase activity
evidence_type: IMP
original_reference_id: PMID:25733715
qualifier: enables
review:
summary: >-
protein kinase activity is directionally related to GSK3B biology but is not
the best curation target; protein serine/threonine kinase activity better captures
the specific supported function or process.
action: MODIFY
reason: >-
For GO:0004672 (protein kinase activity), the IMP annotation with qualifier
enables from PMID:25733715 supports a relationship to GSK3B, but the current
term is less precise than protein serine/threonine kinase activity for the evidence
and for the synthesized core/non-core role of GSK3B. The MODIFY action preserves
the biological intent while pointing curators to the more informative GO term.
proposed_replacement_terms:
- id: GO:0004674
label: protein serine/threonine kinase activity
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0032880
label: regulation of protein localization
evidence_type: IMP
original_reference_id: PMID:25733715
qualifier: involved_in
review:
summary: >-
regulation of protein localization is marked over-annotated for GSK3B because
this biological-process term is too generic, interaction-map-like, or weakly
informative relative to the gene-specific biology: GSK3B catalytic kinase activity,
substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0032880 (regulation of protein localization), the IMP annotation with
qualifier involved_in from PMID:25733715 may reflect a real assay result or
interaction, but this GO term does not identify the specific kinase/substrate,
pathway, or localization annotation that explains GSK3B's role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific
annotations are present, so this is marked over-annotated rather than accepted
as a core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: IDA
original_reference_id: PMID:16705181
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation
with qualifier enables from PMID:16705181 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0045879
label: negative regulation of smoothened signaling pathway
evidence_type: IDA
original_reference_id: PMID:16705181
qualifier: involved_in
review:
summary: >-
negative regulation of smoothened signaling pathway is retained as a non-core
biological-process annotation for GSK3B; it records a supported context, interaction,
localization, or pathway branch that is secondary to GSK3B catalytic kinase
activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling,
glycogen/insulin regulation, tau phosphorylation, protein-turnover control,
and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0045879 (negative regulation of smoothened signaling pathway), the IDA
annotation with qualifier involved_in from PMID:16705181 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: IDA
original_reference_id: GO_REF:0000052
qualifier: located_in
review:
summary: >-
nucleoplasm is retained as a core cellular-component/localization annotation
for GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005654 (nucleoplasm), the IDA annotation with qualifier located_in from
GO_REF:0000052 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005634
label: nucleus
evidence_type: EXP
original_reference_id: PMID:21029237
qualifier: located_in
review:
summary: >-
nucleus is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005634 (nucleus), the EXP annotation with qualifier located_in from
PMID:21029237 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005737
label: cytoplasm
evidence_type: EXP
original_reference_id: PMID:21029237
qualifier: located_in
review:
summary: >-
cytoplasm is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005737 (cytoplasm), the EXP annotation with qualifier located_in from
PMID:21029237 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005737
label: cytoplasm
evidence_type: EXP
original_reference_id: PMID:25169422
qualifier: located_in
review:
summary: >-
cytoplasm is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005737 (cytoplasm), the EXP annotation with qualifier located_in from
PMID:25169422 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005737
label: cytoplasm
evidence_type: EXP
original_reference_id: PMID:25733715
qualifier: located_in
review:
summary: >-
cytoplasm is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005737 (cytoplasm), the EXP annotation with qualifier located_in from
PMID:25733715 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005737
label: cytoplasm
evidence_type: EXP
original_reference_id: PMID:35606353
qualifier: located_in
review:
summary: >-
cytoplasm is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005737 (cytoplasm), the EXP annotation with qualifier located_in from
PMID:35606353 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0106310
label: protein serine kinase activity
evidence_type: EXP
original_reference_id: PMID:17050006
qualifier: enables
review:
summary: >-
protein serine kinase activity is retained as a core molecular-function annotation
for GSK3B; it captures activity or binding specificity within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0106310 (protein serine kinase activity), the EXP annotation with qualifier
enables from PMID:17050006 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0106310
label: protein serine kinase activity
evidence_type: EXP
original_reference_id: PMID:17681942
qualifier: enables
review:
summary: >-
protein serine kinase activity is retained as a core molecular-function annotation
for GSK3B; it captures activity or binding specificity within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0106310 (protein serine kinase activity), the EXP annotation with qualifier
enables from PMID:17681942 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0106310
label: protein serine kinase activity
evidence_type: EXP
original_reference_id: PMID:21343617
qualifier: enables
review:
summary: >-
protein serine kinase activity is retained as a core molecular-function annotation
for GSK3B; it captures activity or binding specificity within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0106310 (protein serine kinase activity), the EXP annotation with qualifier
enables from PMID:21343617 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0106310
label: protein serine kinase activity
evidence_type: EXP
original_reference_id: PMID:22539723
qualifier: enables
review:
summary: >-
protein serine kinase activity is retained as a core molecular-function annotation
for GSK3B; it captures activity or binding specificity within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0106310 (protein serine kinase activity), the EXP annotation with qualifier
enables from PMID:22539723 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0106310
label: protein serine kinase activity
evidence_type: EXP
original_reference_id: PMID:25827072
qualifier: enables
review:
summary: >-
protein serine kinase activity is retained as a core molecular-function annotation
for GSK3B; it captures activity or binding specificity within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0106310 (protein serine kinase activity), the EXP annotation with qualifier
enables from PMID:25827072 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0106310
label: protein serine kinase activity
evidence_type: EXP
original_reference_id: PMID:28992046
qualifier: enables
review:
summary: >-
protein serine kinase activity is retained as a core molecular-function annotation
for GSK3B; it captures activity or binding specificity within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0106310 (protein serine kinase activity), the EXP annotation with qualifier
enables from PMID:28992046 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0106310
label: protein serine kinase activity
evidence_type: EXP
original_reference_id: PMID:29059170
qualifier: enables
review:
summary: >-
protein serine kinase activity is retained as a core molecular-function annotation
for GSK3B; it captures activity or binding specificity within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0106310 (protein serine kinase activity), the EXP annotation with qualifier
enables from PMID:29059170 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0032481
label: positive regulation of type I interferon production
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: >-
positive regulation of type I interferon production is retained as a non-core
biological-process annotation for GSK3B; it records a supported context, interaction,
localization, or pathway branch that is secondary to GSK3B catalytic kinase
activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling,
glycogen/insulin regulation, tau phosphorylation, protein-turnover control,
and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0032481 (positive regulation of type I interferon production), the ISS
annotation with qualifier involved_in from GO_REF:0000024 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0160213
label: beta-arrestin-dependent dopamine receptor signaling pathway
evidence_type: NAS
original_reference_id: PMID:21711983
qualifier: involved_in
review:
summary: >-
beta-arrestin-dependent dopamine receptor signaling pathway is retained as a
non-core biological-process annotation for GSK3B; it records a supported context,
interaction, localization, or pathway branch that is secondary to GSK3B catalytic
kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex
signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover
control, and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0160213 (beta-arrestin-dependent dopamine receptor signaling pathway),
the NAS annotation with qualifier involved_in from PMID:21711983 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0019082
label: viral protein processing
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9683610
qualifier: involved_in
review:
summary: >-
viral protein processing is retained as a non-core biological-process annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0019082 (viral protein processing), the TAS annotation with qualifier
involved_in from Reactome:R-HSA-9683610 supports retaining the annotation, but
the term describes a context-specific outcome or peripheral branch rather than
the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0003170
label: heart valve development
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: >-
heart valve development is retained as a non-core biological-process annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0003170 (heart valve development), the ISS annotation with qualifier
involved_in from GO_REF:0000024 supports retaining the annotation, but the term
describes a context-specific outcome or peripheral branch rather than the principal
GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. Keeping it as non-core prevents broad pathway participation from
being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: IDA
original_reference_id: PMID:25897075
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation
with qualifier enables from PMID:25897075 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0016055
label: Wnt signaling pathway
evidence_type: IMP
original_reference_id: PMID:18156211
qualifier: involved_in
review:
summary: >-
Wnt signaling pathway is retained as a core biological-process annotation for
GSK3B; it captures process participation within the synthesized core biology:
GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0016055 (Wnt signaling pathway), the IMP annotation with qualifier involved_in
from PMID:18156211 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0090090
label: negative regulation of canonical Wnt signaling pathway
evidence_type: IMP
original_reference_id: PMID:24023731
qualifier: involved_in
review:
summary: >-
negative regulation of canonical Wnt signaling pathway is retained as a core
biological-process annotation for GSK3B; it captures process participation within
the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0090090 (negative regulation of canonical Wnt signaling pathway), the
IMP annotation with qualifier involved_in from PMID:24023731 is consistent with
GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed
protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and
protein-turnover substrates. This action keeps the term because it provides
a specific, evidence-backed kinase/substrate, pathway, or localization annotation
rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005788
label: endoplasmic reticulum lumen
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9929360
qualifier: located_in
review:
summary: >-
endoplasmic reticulum lumen is retained as a non-core cellular-component/localization
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0005788 (endoplasmic reticulum lumen), the TAS annotation with qualifier
located_in from Reactome:R-HSA-9929360 supports retaining the annotation, but
the term describes a context-specific outcome or peripheral branch rather than
the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0030877
label: beta-catenin destruction complex
evidence_type: IDA
original_reference_id: PMID:18593713
qualifier: part_of
review:
summary: >-
beta-catenin destruction complex is retained as a core cellular-component/localization
annotation for GSK3B; it captures site of action or component context within
the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0030877 (beta-catenin destruction complex), the IDA annotation with qualifier
part_of from PMID:18593713 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0097110
label: scaffold protein binding
evidence_type: IPI
original_reference_id: PMID:18593713
qualifier: enables
review:
summary: >-
scaffold protein binding is retained as a non-core molecular-function annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0097110 (scaffold protein binding), the IPI annotation with qualifier
enables from PMID:18593713 supports retaining the annotation, but the term describes
a context-specific outcome or peripheral branch rather than the principal GSK3B
function: ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
Keeping it as non-core prevents broad pathway participation from being promoted
to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0034976
label: response to endoplasmic reticulum stress
evidence_type: IDA
original_reference_id: PMID:21343617
qualifier: involved_in
review:
summary: >-
response to endoplasmic reticulum stress is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0034976 (response to endoplasmic reticulum stress), the IDA annotation
with qualifier involved_in from PMID:21343617 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: IDA
original_reference_id: PMID:21343617
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation
with qualifier enables from PMID:21343617 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:1903940
label: negative regulation of TORC2 signaling
evidence_type: IDA
original_reference_id: PMID:21343617
qualifier: involved_in
review:
summary: >-
negative regulation of TORC2 signaling is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:1903940 (negative regulation of TORC2 signaling), the IDA annotation
with qualifier involved_in from PMID:21343617 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: IDA
original_reference_id: PMID:15448698
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation
with qualifier enables from PMID:15448698 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: IDA
original_reference_id: PMID:25827072
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation
with qualifier enables from PMID:25827072 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: IDA
original_reference_id: PMID:29059170
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation
with qualifier enables from PMID:29059170 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0010719
label: negative regulation of epithelial to mesenchymal transition
evidence_type: IDA
original_reference_id: PMID:15448698
qualifier: involved_in
review:
summary: >-
negative regulation of epithelial to mesenchymal transition is retained as a
non-core biological-process annotation for GSK3B; it records a supported context,
interaction, localization, or pathway branch that is secondary to GSK3B catalytic
kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex
signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover
control, and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0010719 (negative regulation of epithelial to mesenchymal transition),
the IDA annotation with qualifier involved_in from PMID:15448698 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0010719
label: negative regulation of epithelial to mesenchymal transition
evidence_type: IDA
original_reference_id: PMID:25827072
qualifier: involved_in
review:
summary: >-
negative regulation of epithelial to mesenchymal transition is retained as a
non-core biological-process annotation for GSK3B; it records a supported context,
interaction, localization, or pathway branch that is secondary to GSK3B catalytic
kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex
signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover
control, and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0010719 (negative regulation of epithelial to mesenchymal transition),
the IDA annotation with qualifier involved_in from PMID:25827072 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0010719
label: negative regulation of epithelial to mesenchymal transition
evidence_type: IDA
original_reference_id: PMID:29059170
qualifier: involved_in
review:
summary: >-
negative regulation of epithelial to mesenchymal transition is retained as a
non-core biological-process annotation for GSK3B; it records a supported context,
interaction, localization, or pathway branch that is secondary to GSK3B catalytic
kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex
signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover
control, and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0010719 (negative regulation of epithelial to mesenchymal transition),
the IDA annotation with qualifier involved_in from PMID:29059170 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:34058472
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:34058472 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0098978
label: glutamatergic synapse
evidence_type: EXP
original_reference_id: PMID:17989287
qualifier: is_active_in
review:
summary: >-
glutamatergic synapse is retained as a non-core cellular-component/localization
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0098978 (glutamatergic synapse), the EXP annotation with qualifier is_active_in
from PMID:17989287 supports retaining the annotation, but the term describes
a context-specific outcome or peripheral branch rather than the principal GSK3B
function: ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
Keeping it as non-core prevents broad pathway participation from being promoted
to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0098978
label: glutamatergic synapse
evidence_type: IDA
original_reference_id: PMID:17989287
qualifier: is_active_in
review:
summary: >-
glutamatergic synapse is retained as a non-core cellular-component/localization
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0098978 (glutamatergic synapse), the IDA annotation with qualifier is_active_in
from PMID:17989287 supports retaining the annotation, but the term describes
a context-specific outcome or peripheral branch rather than the principal GSK3B
function: ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
Keeping it as non-core prevents broad pathway participation from being promoted
to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0098978
label: glutamatergic synapse
evidence_type: IMP
original_reference_id: PMID:17989287
qualifier: is_active_in
review:
summary: >-
glutamatergic synapse is retained as a non-core cellular-component/localization
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0098978 (glutamatergic synapse), the IMP annotation with qualifier is_active_in
from PMID:17989287 supports retaining the annotation, but the term describes
a context-specific outcome or peripheral branch rather than the principal GSK3B
function: ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
Keeping it as non-core prevents broad pathway participation from being promoted
to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0099171
label: presynaptic modulation of chemical synaptic transmission
evidence_type: EXP
original_reference_id: PMID:17989287
qualifier: involved_in
review:
summary: >-
presynaptic modulation of chemical synaptic transmission is retained as a non-core
biological-process annotation for GSK3B; it records a supported context, interaction,
localization, or pathway branch that is secondary to GSK3B catalytic kinase
activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling,
glycogen/insulin regulation, tau phosphorylation, protein-turnover control,
and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0099171 (presynaptic modulation of chemical synaptic transmission), the
EXP annotation with qualifier involved_in from PMID:17989287 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0099171
label: presynaptic modulation of chemical synaptic transmission
evidence_type: IDA
original_reference_id: PMID:17989287
qualifier: involved_in
review:
summary: >-
presynaptic modulation of chemical synaptic transmission is retained as a non-core
biological-process annotation for GSK3B; it records a supported context, interaction,
localization, or pathway branch that is secondary to GSK3B catalytic kinase
activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling,
glycogen/insulin regulation, tau phosphorylation, protein-turnover control,
and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0099171 (presynaptic modulation of chemical synaptic transmission), the
IDA annotation with qualifier involved_in from PMID:17989287 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0099171
label: presynaptic modulation of chemical synaptic transmission
evidence_type: IMP
original_reference_id: PMID:17989287
qualifier: involved_in
review:
summary: >-
presynaptic modulation of chemical synaptic transmission is retained as a non-core
biological-process annotation for GSK3B; it records a supported context, interaction,
localization, or pathway branch that is secondary to GSK3B catalytic kinase
activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling,
glycogen/insulin regulation, tau phosphorylation, protein-turnover control,
and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0099171 (presynaptic modulation of chemical synaptic transmission), the
IMP annotation with qualifier involved_in from PMID:17989287 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0007005
label: mitochondrion organization
evidence_type: IMP
original_reference_id: PMID:25118933
qualifier: involved_in
review:
summary: >-
mitochondrion organization is retained as a non-core biological-process annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0007005 (mitochondrion organization), the IMP annotation with qualifier
involved_in from PMID:25118933 supports retaining the annotation, but the term
describes a context-specific outcome or peripheral branch rather than the principal
GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. Keeping it as non-core prevents broad pathway participation from
being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0030336
label: negative regulation of cell migration
evidence_type: IDA
original_reference_id: PMID:27494834
qualifier: involved_in
review:
summary: >-
negative regulation of cell migration is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0030336 (negative regulation of cell migration), the IDA annotation with
qualifier involved_in from PMID:27494834 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0060070
label: canonical Wnt signaling pathway
evidence_type: IDA
original_reference_id: PMID:16890161
qualifier: involved_in
review:
summary: >-
canonical Wnt signaling pathway is retained as a core biological-process annotation
for GSK3B; it captures process participation within the synthesized core biology:
GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0060070 (canonical Wnt signaling pathway), the IDA annotation with qualifier
involved_in from PMID:16890161 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0045668
label: negative regulation of osteoblast differentiation
evidence_type: IMP
original_reference_id: PMID:24023731
qualifier: involved_in
review:
summary: >-
negative regulation of osteoblast differentiation is retained as a non-core
biological-process annotation for GSK3B; it records a supported context, interaction,
localization, or pathway branch that is secondary to GSK3B catalytic kinase
activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling,
glycogen/insulin regulation, tau phosphorylation, protein-turnover control,
and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0045668 (negative regulation of osteoblast differentiation), the IMP
annotation with qualifier involved_in from PMID:24023731 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0032436
label: positive regulation of proteasomal ubiquitin-dependent protein
catabolic process
evidence_type: IDA
original_reference_id: PMID:22660580
qualifier: involved_in
review:
summary: >-
positive regulation of proteasomal ubiquitin-dependent protein catabolic process
is retained as a core biological-process annotation for GSK3B; it captures process
participation within the synthesized core biology: GSK3B catalytic kinase activity,
substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: ACCEPT
reason: >-
For GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein
catabolic process), the IDA annotation with qualifier involved_in from PMID:22660580
is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0019082
label: viral protein processing
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9694631
qualifier: involved_in
review:
summary: >-
viral protein processing is retained as a non-core biological-process annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0019082 (viral protein processing), the TAS annotation with qualifier
involved_in from Reactome:R-HSA-9694631 supports retaining the annotation, but
the term describes a context-specific outcome or peripheral branch rather than
the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: IDA
original_reference_id: PMID:29142209
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation
with qualifier enables from PMID:29142209 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0031398
label: positive regulation of protein ubiquitination
evidence_type: IDA
original_reference_id: PMID:29142209
qualifier: involved_in
review:
summary: >-
positive regulation of protein ubiquitination is retained as a core biological-process
annotation for GSK3B; it captures process participation within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0031398 (positive regulation of protein ubiquitination), the IDA annotation
with qualifier involved_in from PMID:29142209 is consistent with GSK3B's core
role in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0097191
label: extrinsic apoptotic signaling pathway
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: >-
extrinsic apoptotic signaling pathway is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0097191 (extrinsic apoptotic signaling pathway), the ISS annotation with
qualifier involved_in from GO_REF:0000024 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0010628
label: positive regulation of gene expression
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: >-
positive regulation of gene expression is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0010628 (positive regulation of gene expression), the ISS annotation
with qualifier involved_in from GO_REF:0000024 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: IDA
original_reference_id: PMID:28992046
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation
with qualifier enables from PMID:28992046 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0045724
label: positive regulation of cilium assembly
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: >-
positive regulation of cilium assembly is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0045724 (positive regulation of cilium assembly), the ISS annotation
with qualifier involved_in from GO_REF:0000024 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:1903566
label: positive regulation of protein localization to cilium
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: >-
positive regulation of protein localization to cilium is retained as a non-core
biological-process annotation for GSK3B; it records a supported context, interaction,
localization, or pathway branch that is secondary to GSK3B catalytic kinase
activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling,
glycogen/insulin regulation, tau phosphorylation, protein-turnover control,
and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:1903566 (positive regulation of protein localization to cilium), the
ISS annotation with qualifier involved_in from GO_REF:0000024 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0106310
label: protein serine kinase activity
evidence_type: IGI
original_reference_id: PMID:30556160
qualifier: enables
review:
summary: >-
protein serine kinase activity is retained as a core molecular-function annotation
for GSK3B; it captures activity or binding specificity within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0106310 (protein serine kinase activity), the IGI annotation with qualifier
enables from PMID:30556160 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0010628
label: positive regulation of gene expression
evidence_type: IMP
original_reference_id: PMID:26315788
qualifier: acts_upstream_of
review:
summary: >-
positive regulation of gene expression is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0010628 (positive regulation of gene expression), the IMP annotation
with qualifier acts_upstream_of from PMID:26315788 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0010628
label: positive regulation of gene expression
evidence_type: IMP
original_reference_id: PMID:27050373
qualifier: acts_upstream_of
review:
summary: >-
positive regulation of gene expression is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0010628 (positive regulation of gene expression), the IMP annotation
with qualifier acts_upstream_of from PMID:27050373 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0010629
label: negative regulation of gene expression
evidence_type: IMP
original_reference_id: PMID:27050373
qualifier: acts_upstream_of
review:
summary: >-
negative regulation of gene expression is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0010629 (negative regulation of gene expression), the IMP annotation
with qualifier acts_upstream_of from PMID:27050373 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0090090
label: negative regulation of canonical Wnt signaling pathway
evidence_type: IGI
original_reference_id: PMID:27846906
qualifier: involved_in
review:
summary: >-
negative regulation of canonical Wnt signaling pathway is retained as a core
biological-process annotation for GSK3B; it captures process participation within
the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0090090 (negative regulation of canonical Wnt signaling pathway), the
IGI annotation with qualifier involved_in from PMID:27846906 is consistent with
GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed
protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and
protein-turnover substrates. This action keeps the term because it provides
a specific, evidence-backed kinase/substrate, pathway, or localization annotation
rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0010629
label: negative regulation of gene expression
evidence_type: IMP
original_reference_id: PMID:28122350
qualifier: acts_upstream_of
review:
summary: >-
negative regulation of gene expression is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0010629 (negative regulation of gene expression), the IMP annotation
with qualifier acts_upstream_of from PMID:28122350 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0045597
label: positive regulation of cell differentiation
evidence_type: IMP
original_reference_id: PMID:28122350
qualifier: involved_in
review:
summary: >-
positive regulation of cell differentiation is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0045597 (positive regulation of cell differentiation), the IMP annotation
with qualifier involved_in from PMID:28122350 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0071300
label: cellular response to retinoic acid
evidence_type: IMP
original_reference_id: PMID:28122350
qualifier: involved_in
review:
summary: >-
cellular response to retinoic acid is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0071300 (cellular response to retinoic acid), the IMP annotation with
qualifier involved_in from PMID:28122350 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:2000740
label: negative regulation of mesenchymal stem cell differentiation
evidence_type: IMP
original_reference_id: PMID:24023731
qualifier: involved_in
review:
summary: >-
negative regulation of mesenchymal stem cell differentiation is retained as
a non-core biological-process annotation for GSK3B; it records a supported context,
interaction, localization, or pathway branch that is secondary to GSK3B catalytic
kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex
signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover
control, and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:2000740 (negative regulation of mesenchymal stem cell differentiation),
the IMP annotation with qualifier involved_in from PMID:24023731 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: IDA
original_reference_id: PMID:19364825
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation
with qualifier enables from PMID:19364825 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0032436
label: positive regulation of proteasomal ubiquitin-dependent protein
catabolic process
evidence_type: IDA
original_reference_id: PMID:19364825
qualifier: involved_in
review:
summary: >-
positive regulation of proteasomal ubiquitin-dependent protein catabolic process
is retained as a core biological-process annotation for GSK3B; it captures process
participation within the synthesized core biology: GSK3B catalytic kinase activity,
substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: ACCEPT
reason: >-
For GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein
catabolic process), the IDA annotation with qualifier involved_in from PMID:19364825
is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:18846110
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:18846110 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:1902042
label: negative regulation of extrinsic apoptotic signaling pathway via
death domain receptors
evidence_type: IMP
original_reference_id: PMID:18846110
qualifier: involved_in
review:
summary: >-
negative regulation of extrinsic apoptotic signaling pathway via death domain
receptors is retained as a non-core biological-process annotation for GSK3B;
it records a supported context, interaction, localization, or pathway branch
that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:1902042 (negative regulation of extrinsic apoptotic signaling pathway
via death domain receptors), the IMP annotation with qualifier involved_in from
PMID:18846110 supports retaining the annotation, but the term describes a context-specific
outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core
prevents broad pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:31073040
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:31073040 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0150101
label: regulation of microtubule anchoring at centrosome
evidence_type: IMP
original_reference_id: PMID:17139249
qualifier: involved_in
review:
summary: >-
regulation of microtubule anchoring at centrosome is retained as a non-core
biological-process annotation for GSK3B; it records a supported context, interaction,
localization, or pathway branch that is secondary to GSK3B catalytic kinase
activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling,
glycogen/insulin regulation, tau phosphorylation, protein-turnover control,
and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0150101 (regulation of microtubule anchoring at centrosome), the IMP
annotation with qualifier involved_in from PMID:17139249 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0010508
label: positive regulation of autophagy
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: >-
positive regulation of autophagy is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0010508 (positive regulation of autophagy), the ISS annotation with qualifier
involved_in from GO_REF:0000024 supports retaining the annotation, but the term
describes a context-specific outcome or peripheral branch rather than the principal
GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. Keeping it as non-core prevents broad pathway participation from
being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0042752
label: regulation of circadian rhythm
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: >-
regulation of circadian rhythm is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0042752 (regulation of circadian rhythm), the ISS annotation with qualifier
involved_in from GO_REF:0000024 supports retaining the annotation, but the term
describes a context-specific outcome or peripheral branch rather than the principal
GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. Keeping it as non-core prevents broad pathway participation from
being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:1900271
label: regulation of long-term synaptic potentiation
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: >-
regulation of long-term synaptic potentiation is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:1900271 (regulation of long-term synaptic potentiation), the ISS annotation
with qualifier involved_in from GO_REF:0000024 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0106027
label: neuron projection organization
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: >-
neuron projection organization is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0106027 (neuron projection organization), the ISS annotation with qualifier
involved_in from GO_REF:0000024 supports retaining the annotation, but the term
describes a context-specific outcome or peripheral branch rather than the principal
GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. Keeping it as non-core prevents broad pathway participation from
being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:28903391
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:28903391 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0048156
label: tau protein binding
evidence_type: NAS
original_reference_id: PMID:28386764
qualifier: enables
review:
summary: >-
tau protein binding is retained as a core molecular-function annotation for
GSK3B; it captures activity or binding specificity within the synthesized core
biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0048156 (tau protein binding), the NAS annotation with qualifier enables
from PMID:28386764 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0050321
label: tau-protein kinase activity
evidence_type: NAS
original_reference_id: PMID:28386764
qualifier: enables
review:
summary: >-
tau-protein kinase activity is retained as a core molecular-function annotation
for GSK3B; it captures activity or binding specificity within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0050321 (tau-protein kinase activity), the NAS annotation with qualifier
enables from PMID:28386764 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0090090
label: negative regulation of canonical Wnt signaling pathway
evidence_type: IC
original_reference_id: PMID:9601641
qualifier: involved_in
review:
summary: >-
negative regulation of canonical Wnt signaling pathway is retained as a core
biological-process annotation for GSK3B; it captures process participation within
the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0090090 (negative regulation of canonical Wnt signaling pathway), the
IC annotation with qualifier involved_in from PMID:9601641 is consistent with
GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed
protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and
protein-turnover substrates. This action keeps the term because it provides
a specific, evidence-backed kinase/substrate, pathway, or localization annotation
rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004672
label: protein kinase activity
evidence_type: IMP
original_reference_id: PMID:16981698
qualifier: enables
review:
summary: >-
protein kinase activity is directionally related to GSK3B biology but is not
the best curation target; protein serine/threonine kinase activity better captures
the specific supported function or process.
action: MODIFY
reason: >-
For GO:0004672 (protein kinase activity), the IMP annotation with qualifier
enables from PMID:16981698 supports a relationship to GSK3B, but the current
term is less precise than protein serine/threonine kinase activity for the evidence
and for the synthesized core/non-core role of GSK3B. The MODIFY action preserves
the biological intent while pointing curators to the more informative GO term.
proposed_replacement_terms:
- id: GO:0004674
label: protein serine/threonine kinase activity
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: IMP
original_reference_id: PMID:16981698
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the IMP annotation
with qualifier enables from PMID:16981698 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16981698
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:16981698 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0006468
label: protein phosphorylation
evidence_type: IMP
original_reference_id: PMID:16981698
qualifier: involved_in
review:
summary: >-
protein phosphorylation is retained as a core biological-process annotation
for GSK3B; it captures process participation within the synthesized core biology:
GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0006468 (protein phosphorylation), the IMP annotation with qualifier
involved_in from PMID:16981698 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0090090
label: negative regulation of canonical Wnt signaling pathway
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: >-
negative regulation of canonical Wnt signaling pathway is retained as a core
biological-process annotation for GSK3B; it captures process participation within
the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0090090 (negative regulation of canonical Wnt signaling pathway), the
ISS annotation with qualifier involved_in from GO_REF:0000024 is consistent
with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of
primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau,
and protein-turnover substrates. This action keeps the term because it provides
a specific, evidence-backed kinase/substrate, pathway, or localization annotation
rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:28829046
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:28829046 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0030010
label: establishment of cell polarity
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: >-
establishment of cell polarity is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0030010 (establishment of cell polarity), the ISS annotation with qualifier
involved_in from GO_REF:0000024 supports retaining the annotation, but the term
describes a context-specific outcome or peripheral branch rather than the principal
GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. Keeping it as non-core prevents broad pathway participation from
being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0030010
label: establishment of cell polarity
evidence_type: TAS
original_reference_id: PMID:18268107
qualifier: involved_in
review:
summary: >-
establishment of cell polarity is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0030010 (establishment of cell polarity), the TAS annotation with qualifier
involved_in from PMID:18268107 supports retaining the annotation, but the term
describes a context-specific outcome or peripheral branch rather than the principal
GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. Keeping it as non-core prevents broad pathway participation from
being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0030011
label: maintenance of cell polarity
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: >-
maintenance of cell polarity is retained as a non-core biological-process annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0030011 (maintenance of cell polarity), the ISS annotation with qualifier
involved_in from GO_REF:0000024 supports retaining the annotation, but the term
describes a context-specific outcome or peripheral branch rather than the principal
GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. Keeping it as non-core prevents broad pathway participation from
being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0030011
label: maintenance of cell polarity
evidence_type: TAS
original_reference_id: PMID:18268107
qualifier: involved_in
review:
summary: >-
maintenance of cell polarity is retained as a non-core biological-process annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0030011 (maintenance of cell polarity), the TAS annotation with qualifier
involved_in from PMID:18268107 supports retaining the annotation, but the term
describes a context-specific outcome or peripheral branch rather than the principal
GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. Keeping it as non-core prevents broad pathway participation from
being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0030424
label: axon
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: located_in
review:
summary: >-
axon is retained as a non-core cellular-component/localization annotation for
GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0030424 (axon), the ISS annotation with qualifier located_in from GO_REF:0000024
supports retaining the annotation, but the term describes a context-specific
outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core
prevents broad pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0030425
label: dendrite
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: located_in
review:
summary: >-
dendrite is retained as a non-core cellular-component/localization annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0030425 (dendrite), the ISS annotation with qualifier located_in from
GO_REF:0000024 supports retaining the annotation, but the term describes a context-specific
outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core
prevents broad pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0030516
label: regulation of axon extension
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: >-
regulation of axon extension is retained as a non-core biological-process annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0030516 (regulation of axon extension), the ISS annotation with qualifier
involved_in from GO_REF:0000024 supports retaining the annotation, but the term
describes a context-specific outcome or peripheral branch rather than the principal
GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. Keeping it as non-core prevents broad pathway participation from
being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0048814
label: regulation of dendrite morphogenesis
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: >-
regulation of dendrite morphogenesis is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0048814 (regulation of dendrite morphogenesis), the ISS annotation with
qualifier involved_in from GO_REF:0000024 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0050770
label: regulation of axonogenesis
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: >-
regulation of axonogenesis is retained as a non-core biological-process annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0050770 (regulation of axonogenesis), the ISS annotation with qualifier
involved_in from GO_REF:0000024 supports retaining the annotation, but the term
describes a context-specific outcome or peripheral branch rather than the principal
GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. Keeping it as non-core prevents broad pathway participation from
being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0070507
label: regulation of microtubule cytoskeleton organization
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: >-
regulation of microtubule cytoskeleton organization is retained as a core biological-process
annotation for GSK3B; it captures process participation within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0070507 (regulation of microtubule cytoskeleton organization), the ISS
annotation with qualifier involved_in from GO_REF:0000024 is consistent with
GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed
protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and
protein-turnover substrates. This action keeps the term because it provides
a specific, evidence-backed kinase/substrate, pathway, or localization annotation
rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: NAS
original_reference_id: PMID:28386764
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the NAS annotation
with qualifier enables from PMID:28386764 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0060079
label: excitatory postsynaptic potential
evidence_type: NAS
original_reference_id: PMID:21711983
qualifier: involved_in
review:
summary: >-
excitatory postsynaptic potential is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0060079 (excitatory postsynaptic potential), the NAS annotation with
qualifier involved_in from PMID:21711983 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:25897075
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:25897075 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0032436
label: positive regulation of proteasomal ubiquitin-dependent protein
catabolic process
evidence_type: IMP
original_reference_id: PMID:25897075
qualifier: involved_in
review:
summary: >-
positive regulation of proteasomal ubiquitin-dependent protein catabolic process
is retained as a core biological-process annotation for GSK3B; it captures process
participation within the synthesized core biology: GSK3B catalytic kinase activity,
substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: ACCEPT
reason: >-
For GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein
catabolic process), the IMP annotation with qualifier involved_in from PMID:25897075
is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: IDA
original_reference_id: PMID:17139249
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation
with qualifier enables from PMID:17139249 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0034452
label: dynactin binding
evidence_type: IPI
original_reference_id: PMID:17139249
qualifier: enables
review:
summary: >-
dynactin binding is retained as a non-core molecular-function annotation for
GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0034452 (dynactin binding), the IPI annotation with qualifier enables
from PMID:17139249 supports retaining the annotation, but the term describes
a context-specific outcome or peripheral branch rather than the principal GSK3B
function: ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
Keeping it as non-core prevents broad pathway participation from being promoted
to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:1904781
label: positive regulation of protein localization to centrosome
evidence_type: IMP
original_reference_id: PMID:17139249
qualifier: involved_in
review:
summary: >-
positive regulation of protein localization to centrosome is retained as a non-core
biological-process annotation for GSK3B; it records a supported context, interaction,
localization, or pathway branch that is secondary to GSK3B catalytic kinase
activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling,
glycogen/insulin regulation, tau phosphorylation, protein-turnover control,
and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:1904781 (positive regulation of protein localization to centrosome),
the IMP annotation with qualifier involved_in from PMID:17139249 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005813
label: centrosome
evidence_type: IDA
original_reference_id: PMID:17139249
qualifier: located_in
review:
summary: >-
centrosome is retained as a non-core cellular-component/localization annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0005813 (centrosome), the IDA annotation with qualifier located_in from
PMID:17139249 supports retaining the annotation, but the term describes a context-specific
outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core
prevents broad pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: NAS
original_reference_id: PMID:8725894
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the NAS annotation
with qualifier enables from PMID:8725894 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:1904646
label: cellular response to amyloid-beta
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: >-
cellular response to amyloid-beta is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:1904646 (cellular response to amyloid-beta), the ISS annotation with
qualifier involved_in from GO_REF:0000024 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:20007971
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:20007971 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0031175
label: neuron projection development
evidence_type: IDA
original_reference_id: PMID:19830702
qualifier: involved_in
review:
summary: >-
neuron projection development is retained as a core biological-process annotation
for GSK3B; it captures process participation within the synthesized core biology:
GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0031175 (neuron projection development), the IDA annotation with qualifier
involved_in from PMID:19830702 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:25920809
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:25920809 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:27484798
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:27484798 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0002020
label: protease binding
evidence_type: IPI
original_reference_id: PMID:25118933
qualifier: enables
review:
summary: >-
protease binding is retained as a non-core molecular-function annotation for
GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0002020 (protease binding), the IPI annotation with qualifier enables
from PMID:25118933 supports retaining the annotation, but the term describes
a context-specific outcome or peripheral branch rather than the principal GSK3B
function: ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
Keeping it as non-core prevents broad pathway participation from being promoted
to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0004672
label: protein kinase activity
evidence_type: TAS
original_reference_id: PMID:26049140
qualifier: enables
review:
summary: >-
protein kinase activity is directionally related to GSK3B biology but is not
the best curation target; protein serine/threonine kinase activity better captures
the specific supported function or process.
action: MODIFY
reason: >-
For GO:0004672 (protein kinase activity), the TAS annotation with qualifier
enables from PMID:26049140 supports a relationship to GSK3B, but the current
term is less precise than protein serine/threonine kinase activity for the evidence
and for the synthesized core/non-core role of GSK3B. The MODIFY action preserves
the biological intent while pointing curators to the more informative GO term.
proposed_replacement_terms:
- id: GO:0004674
label: protein serine/threonine kinase activity
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0035556
label: intracellular signal transduction
evidence_type: TAS
original_reference_id: PMID:26049140
qualifier: involved_in
review:
summary: >-
intracellular signal transduction is marked over-annotated for GSK3B because
this biological-process term is too generic, interaction-map-like, or weakly
informative relative to the gene-specific biology: GSK3B catalytic kinase activity,
substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0035556 (intracellular signal transduction), the TAS annotation with
qualifier involved_in from PMID:26049140 may reflect a real assay result or
interaction, but this GO term does not identify the specific kinase/substrate,
pathway, or localization annotation that explains GSK3B's role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific
annotations are present, so this is marked over-annotated rather than accepted
as a core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:1904339
label: negative regulation of dopaminergic neuron differentiation
evidence_type: TAS
original_reference_id: PMID:24431302
qualifier: involved_in
review:
summary: >-
negative regulation of dopaminergic neuron differentiation is retained as a
non-core biological-process annotation for GSK3B; it records a supported context,
interaction, localization, or pathway branch that is secondary to GSK3B catalytic
kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex
signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover
control, and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:1904339 (negative regulation of dopaminergic neuron differentiation),
the TAS annotation with qualifier involved_in from PMID:24431302 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0004672
label: protein kinase activity
evidence_type: TAS
original_reference_id: PMID:22988876
qualifier: enables
review:
summary: >-
protein kinase activity is directionally related to GSK3B biology but is not
the best curation target; protein serine/threonine kinase activity better captures
the specific supported function or process.
action: MODIFY
reason: >-
For GO:0004672 (protein kinase activity), the TAS annotation with qualifier
enables from PMID:22988876 supports a relationship to GSK3B, but the current
term is less precise than protein serine/threonine kinase activity for the evidence
and for the synthesized core/non-core role of GSK3B. The MODIFY action preserves
the biological intent while pointing curators to the more informative GO term.
proposed_replacement_terms:
- id: GO:0004674
label: protein serine/threonine kinase activity
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004672
label: protein kinase activity
evidence_type: TAS
original_reference_id: PMID:24115276
qualifier: enables
review:
summary: >-
protein kinase activity is directionally related to GSK3B biology but is not
the best curation target; protein serine/threonine kinase activity better captures
the specific supported function or process.
action: MODIFY
reason: >-
For GO:0004672 (protein kinase activity), the TAS annotation with qualifier
enables from PMID:24115276 supports a relationship to GSK3B, but the current
term is less precise than protein serine/threonine kinase activity for the evidence
and for the synthesized core/non-core role of GSK3B. The MODIFY action preserves
the biological intent while pointing curators to the more informative GO term.
proposed_replacement_terms:
- id: GO:0004674
label: protein serine/threonine kinase activity
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:1990909
label: Wnt signalosome
evidence_type: TAS
original_reference_id: PMID:24115276
qualifier: part_of
review:
summary: >-
Wnt signalosome is retained as a core cellular-component/localization annotation
for GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:1990909 (Wnt signalosome), the TAS annotation with qualifier part_of
from PMID:24115276 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: IDA
original_reference_id: PMID:11955436
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation
with qualifier enables from PMID:11955436 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0030877
label: beta-catenin destruction complex
evidence_type: TAS
original_reference_id: PMID:11955436
qualifier: part_of
review:
summary: >-
beta-catenin destruction complex is retained as a core cellular-component/localization
annotation for GSK3B; it captures site of action or component context within
the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0030877 (beta-catenin destruction complex), the TAS annotation with qualifier
part_of from PMID:11955436 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0032436
label: positive regulation of proteasomal ubiquitin-dependent protein
catabolic process
evidence_type: IC
original_reference_id: PMID:11955436
qualifier: involved_in
review:
summary: >-
positive regulation of proteasomal ubiquitin-dependent protein catabolic process
is retained as a core biological-process annotation for GSK3B; it captures process
participation within the synthesized core biology: GSK3B catalytic kinase activity,
substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: ACCEPT
reason: >-
For GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein
catabolic process), the IC annotation with qualifier involved_in from PMID:11955436
is consistent with GSK3B's core role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0090090
label: negative regulation of canonical Wnt signaling pathway
evidence_type: IC
original_reference_id: PMID:11955436
qualifier: involved_in
review:
summary: >-
negative regulation of canonical Wnt signaling pathway is retained as a core
biological-process annotation for GSK3B; it captures process participation within
the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0090090 (negative regulation of canonical Wnt signaling pathway), the
IC annotation with qualifier involved_in from PMID:11955436 is consistent with
GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed
protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and
protein-turnover substrates. This action keeps the term because it provides
a specific, evidence-backed kinase/substrate, pathway, or localization annotation
rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: IDA
original_reference_id: PMID:16315267
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation
with qualifier enables from PMID:16315267 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9762094
qualifier: located_in
review:
summary: >-
nucleoplasm is retained as a core cellular-component/localization annotation
for GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005654 (nucleoplasm), the TAS annotation with qualifier located_in from
Reactome:R-HSA-9762094 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9824995
qualifier: located_in
review:
summary: >-
nucleoplasm is retained as a core cellular-component/localization annotation
for GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005654 (nucleoplasm), the TAS annotation with qualifier located_in from
Reactome:R-HSA-9824995 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9824999
qualifier: located_in
review:
summary: >-
nucleoplasm is retained as a core cellular-component/localization annotation
for GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005654 (nucleoplasm), the TAS annotation with qualifier located_in from
Reactome:R-HSA-9824999 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9943675
qualifier: located_in
review:
summary: >-
nucleoplasm is retained as a core cellular-component/localization annotation
for GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005654 (nucleoplasm), the TAS annotation with qualifier located_in from
Reactome:R-HSA-9943675 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-NUL-9008555
qualifier: located_in
review:
summary: >-
nucleoplasm is retained as a core cellular-component/localization annotation
for GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005654 (nucleoplasm), the TAS annotation with qualifier located_in from
Reactome:R-NUL-9008555 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-NUL-9008636
qualifier: located_in
review:
summary: >-
nucleoplasm is retained as a core cellular-component/localization annotation
for GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005654 (nucleoplasm), the TAS annotation with qualifier located_in from
Reactome:R-NUL-9008636 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:1900181
label: negative regulation of protein localization to nucleus
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: >-
negative regulation of protein localization to nucleus is retained as a non-core
biological-process annotation for GSK3B; it records a supported context, interaction,
localization, or pathway branch that is secondary to GSK3B catalytic kinase
activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling,
glycogen/insulin regulation, tau phosphorylation, protein-turnover control,
and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:1900181 (negative regulation of protein localization to nucleus), the
ISS annotation with qualifier involved_in from GO_REF:0000024 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:24391509
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:24391509 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0016301
label: kinase activity
evidence_type: IDA
original_reference_id: PMID:24391509
qualifier: enables
review:
summary: >-
kinase activity is directionally related to GSK3B biology but is not the best
curation target; protein serine/threonine kinase activity better captures the
specific supported function or process.
action: MODIFY
reason: >-
For GO:0016301 (kinase activity), the IDA annotation with qualifier enables
from PMID:24391509 supports a relationship to GSK3B, but the current term is
less precise than protein serine/threonine kinase activity for the evidence
and for the synthesized core/non-core role of GSK3B. The MODIFY action preserves
the biological intent while pointing curators to the more informative GO term.
proposed_replacement_terms:
- id: GO:0004674
label: protein serine/threonine kinase activity
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:19706605
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:19706605 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0046777
label: protein autophosphorylation
evidence_type: IDA
original_reference_id: PMID:23184662
qualifier: involved_in
review:
summary: >-
protein autophosphorylation is retained as a core biological-process annotation
for GSK3B; it captures process participation within the synthesized core biology:
GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0046777 (protein autophosphorylation), the IDA annotation with qualifier
involved_in from PMID:23184662 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5339713
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-5339713 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0036016
label: cellular response to interleukin-3
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: >-
cellular response to interleukin-3 is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0036016 (cellular response to interleukin-3), the ISS annotation with
qualifier involved_in from GO_REF:0000024 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0097192
label: extrinsic apoptotic signaling pathway in absence of ligand
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: >-
extrinsic apoptotic signaling pathway in absence of ligand is retained as a
non-core biological-process annotation for GSK3B; it records a supported context,
interaction, localization, or pathway branch that is secondary to GSK3B catalytic
kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex
signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover
control, and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0097192 (extrinsic apoptotic signaling pathway in absence of ligand),
the ISS annotation with qualifier involved_in from GO_REF:0000024 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:1901030
label: positive regulation of mitochondrial outer membrane permeabilization
involved in apoptotic signaling pathway
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: >-
positive regulation of mitochondrial outer membrane permeabilization involved
in apoptotic signaling pathway is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:1901030 (positive regulation of mitochondrial outer membrane permeabilization
involved in apoptotic signaling pathway), the ISS annotation with qualifier
involved_in from GO_REF:0000024 supports retaining the annotation, but the term
describes a context-specific outcome or peripheral branch rather than the principal
GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. Keeping it as non-core prevents broad pathway participation from
being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-2399966
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-2399966 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-1504186
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-1504186 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-195251
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-195251 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-195275
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-195275 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-195280
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-195280 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-195283
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-195283 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-195287
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-195287 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-195300
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-195300 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-195304
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-195304 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-195318
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-195318 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-201677
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-201677 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-201685
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-201685 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-2130279
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-2130279 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-2130282
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-2130282 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-2130286
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-2130286 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-3371435
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-3371435 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-399951
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-399951 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-4791278
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-4791278 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-4827388
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-4827388 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-4839634
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-4839634 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-4839635
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-4839635 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-4839638
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-4839638 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-4839734
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-4839734 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-4839746
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-4839746 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5229343
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-5229343 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5323526
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-5323526 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5368596
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-5368596 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5610732
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-5610732 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9683664
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-9683664 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9687724
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-9687724 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9729260
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-HSA-9729260 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-NUL-1458902
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-NUL-1458902 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-NUL-209146
qualifier: located_in
review:
summary: >-
cytosol is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005829 (cytosol), the TAS annotation with qualifier located_in from
Reactome:R-NUL-209146 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0007623
label: circadian rhythm
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: >-
circadian rhythm is retained as a non-core biological-process annotation for
GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0007623 (circadian rhythm), the ISS annotation with qualifier involved_in
from GO_REF:0000024 supports retaining the annotation, but the term describes
a context-specific outcome or peripheral branch rather than the principal GSK3B
function: ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
Keeping it as non-core prevents broad pathway participation from being promoted
to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0032092
label: positive regulation of protein binding
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: involved_in
review:
summary: >-
positive regulation of protein binding is marked over-annotated for GSK3B because
this biological-process term is too generic, interaction-map-like, or weakly
informative relative to the gene-specific biology: GSK3B catalytic kinase activity,
substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0032092 (positive regulation of protein binding), the ISS annotation
with qualifier involved_in from GO_REF:0000024 may reflect a real assay result
or interaction, but this GO term does not identify the specific kinase/substrate,
pathway, or localization annotation that explains GSK3B's role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific
annotations are present, so this is marked over-annotated rather than accepted
as a core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: IDA
original_reference_id: PMID:9072970
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation
with qualifier enables from PMID:9072970 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0030877
label: beta-catenin destruction complex
evidence_type: TAS
original_reference_id: PMID:19366350
qualifier: part_of
review:
summary: >-
beta-catenin destruction complex is retained as a core cellular-component/localization
annotation for GSK3B; it captures site of action or component context within
the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0030877 (beta-catenin destruction complex), the TAS annotation with qualifier
part_of from PMID:19366350 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0045719
label: negative regulation of glycogen biosynthetic process
evidence_type: TAS
original_reference_id: PMID:19366350
qualifier: involved_in
review:
summary: >-
negative regulation of glycogen biosynthetic process is retained as a core biological-process
annotation for GSK3B; it captures process participation within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0045719 (negative regulation of glycogen biosynthetic process), the TAS
annotation with qualifier involved_in from PMID:19366350 is consistent with
GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed
protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and
protein-turnover substrates. This action keeps the term because it provides
a specific, evidence-backed kinase/substrate, pathway, or localization annotation
rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0050321
label: tau-protein kinase activity
evidence_type: IDA
original_reference_id: PMID:14690523
qualifier: enables
review:
summary: >-
tau-protein kinase activity is retained as a core molecular-function annotation
for GSK3B; it captures activity or binding specificity within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0050321 (tau-protein kinase activity), the IDA annotation with qualifier
enables from PMID:14690523 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0070885
label: negative regulation of calcineurin-NFAT signaling cascade
evidence_type: IMP
original_reference_id: PMID:9072970
qualifier: involved_in
review:
summary: >-
negative regulation of calcineurin-NFAT signaling cascade is retained as a non-core
biological-process annotation for GSK3B; it records a supported context, interaction,
localization, or pathway branch that is secondary to GSK3B catalytic kinase
activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling,
glycogen/insulin regulation, tau phosphorylation, protein-turnover control,
and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0070885 (negative regulation of calcineurin-NFAT signaling cascade),
the IMP annotation with qualifier involved_in from PMID:9072970 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0090090
label: negative regulation of canonical Wnt signaling pathway
evidence_type: TAS
original_reference_id: PMID:19366350
qualifier: involved_in
review:
summary: >-
negative regulation of canonical Wnt signaling pathway is retained as a core
biological-process annotation for GSK3B; it captures process participation within
the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0090090 (negative regulation of canonical Wnt signaling pathway), the
TAS annotation with qualifier involved_in from PMID:19366350 is consistent with
GSK3B's core role in ATP-dependent serine/threonine phosphorylation of primed
protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and
protein-turnover substrates. This action keeps the term because it provides
a specific, evidence-backed kinase/substrate, pathway, or localization annotation
rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:2000077
label: negative regulation of type B pancreatic cell development
evidence_type: TAS
original_reference_id: PMID:19366350
qualifier: involved_in
review:
summary: >-
negative regulation of type B pancreatic cell development is retained as a non-core
biological-process annotation for GSK3B; it records a supported context, interaction,
localization, or pathway branch that is secondary to GSK3B catalytic kinase
activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling,
glycogen/insulin regulation, tau phosphorylation, protein-turnover control,
and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:2000077 (negative regulation of type B pancreatic cell development),
the TAS annotation with qualifier involved_in from PMID:19366350 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:2000466
label: negative regulation of glycogen (starch) synthase activity
evidence_type: TAS
original_reference_id: PMID:19366350
qualifier: involved_in
review:
summary: >-
negative regulation of glycogen (starch) synthase activity is retained as a
core biological-process annotation for GSK3B; it captures process participation
within the synthesized core biology: GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: ACCEPT
reason: >-
For GO:2000466 (negative regulation of glycogen (starch) synthase activity),
the TAS annotation with qualifier involved_in from PMID:19366350 is consistent
with GSK3B's core role in ATP-dependent serine/threonine phosphorylation of
primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin, tau,
and protein-turnover substrates. This action keeps the term because it provides
a specific, evidence-backed kinase/substrate, pathway, or localization annotation
rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: IDA
original_reference_id: PMID:18348280
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation
with qualifier enables from PMID:18348280 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0019901
label: protein kinase binding
evidence_type: IPI
original_reference_id: PMID:18348280
qualifier: enables
review:
summary: >-
protein kinase binding is retained as a non-core molecular-function annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0019901 (protein kinase binding), the IPI annotation with qualifier enables
from PMID:18348280 supports retaining the annotation, but the term describes
a context-specific outcome or peripheral branch rather than the principal GSK3B
function: ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
Keeping it as non-core prevents broad pathway participation from being promoted
to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005813
label: centrosome
evidence_type: IDA
original_reference_id: PMID:21399614
qualifier: located_in
review:
summary: >-
centrosome is retained as a non-core cellular-component/localization annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0005813 (centrosome), the IDA annotation with qualifier located_in from
PMID:21399614 supports retaining the annotation, but the term describes a context-specific
outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core
prevents broad pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:20937854
qualifier: located_in
review:
summary: >-
cytoplasm is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005737 (cytoplasm), the IDA annotation with qualifier located_in from
PMID:20937854 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005886
label: plasma membrane
evidence_type: IDA
original_reference_id: PMID:20937854
qualifier: located_in
review:
summary: >-
plasma membrane is retained as a core cellular-component/localization annotation
for GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005886 (plasma membrane), the IDA annotation with qualifier located_in
from PMID:20937854 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0006468
label: protein phosphorylation
evidence_type: IDA
original_reference_id: PMID:20937854
qualifier: involved_in
review:
summary: >-
protein phosphorylation is retained as a core biological-process annotation
for GSK3B; it captures process participation within the synthesized core biology:
GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0006468 (protein phosphorylation), the IDA annotation with qualifier
involved_in from PMID:20937854 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0032886
label: regulation of microtubule-based process
evidence_type: IMP
original_reference_id: PMID:20937854
qualifier: involved_in
review:
summary: >-
regulation of microtubule-based process is retained as a core biological-process
annotation for GSK3B; it captures process participation within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0032886 (regulation of microtubule-based process), the IMP annotation
with qualifier involved_in from PMID:20937854 is consistent with GSK3B's core
role in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:9731200
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:9731200 may reflect a real assay result or interaction, but this GO
term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0061629
label: RNA polymerase II-specific DNA-binding transcription factor binding
evidence_type: IPI
original_reference_id: PMID:20864106
qualifier: enables
review:
summary: >-
RNA polymerase II-specific DNA-binding transcription factor binding is retained
as a non-core molecular-function annotation for GSK3B; it records a supported
context, interaction, localization, or pathway branch that is secondary to GSK3B
catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex
signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover
control, and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0061629 (RNA polymerase II-specific DNA-binding transcription factor
binding), the IPI annotation with qualifier enables from PMID:20864106 supports
retaining the annotation, but the term describes a context-specific outcome
or peripheral branch rather than the principal GSK3B function: ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core
prevents broad pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0031625
label: ubiquitin protein ligase binding
evidence_type: IPI
original_reference_id: PMID:21118991
qualifier: enables
review:
summary: >-
ubiquitin protein ligase binding is retained as a non-core molecular-function
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0031625 (ubiquitin protein ligase binding), the IPI annotation with qualifier
enables from PMID:21118991 supports retaining the annotation, but the term describes
a context-specific outcome or peripheral branch rather than the principal GSK3B
function: ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
Keeping it as non-core prevents broad pathway participation from being promoted
to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0002039
label: p53 binding
evidence_type: IDA
original_reference_id: PMID:14744935
qualifier: enables
review:
summary: >-
p53 binding is retained as a non-core molecular-function annotation for GSK3B;
it records a supported context, interaction, localization, or pathway branch
that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0002039 (p53 binding), the IDA annotation with qualifier enables from
PMID:14744935 supports retaining the annotation, but the term describes a context-specific
outcome or peripheral branch rather than the principal GSK3B function: ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core
prevents broad pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: IDA
original_reference_id: PMID:14744935
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation
with qualifier enables from PMID:14744935 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:14744935
qualifier: located_in
review:
summary: >-
nucleus is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005634 (nucleus), the IDA annotation with qualifier located_in from
PMID:14744935 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:14744935
qualifier: located_in
review:
summary: >-
cytoplasm is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005737 (cytoplasm), the IDA annotation with qualifier located_in from
PMID:14744935 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0006983
label: ER overload response
evidence_type: IDA
original_reference_id: PMID:14744935
qualifier: acts_upstream_of_or_within
review:
summary: >-
ER overload response is retained as a non-core biological-process annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0006983 (ER overload response), the IDA annotation with qualifier acts_upstream_of_or_within
from PMID:14744935 supports retaining the annotation, but the term describes
a context-specific outcome or peripheral branch rather than the principal GSK3B
function: ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
Keeping it as non-core prevents broad pathway participation from being promoted
to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0018105
label: peptidyl-serine phosphorylation
evidence_type: IDA
original_reference_id: PMID:14744935
qualifier: acts_upstream_of_or_within
review:
summary: >-
peptidyl-serine phosphorylation is retained as a core biological-process annotation
for GSK3B; it captures process participation within the synthesized core biology:
GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0018105 (peptidyl-serine phosphorylation), the IDA annotation with qualifier
acts_upstream_of_or_within from PMID:14744935 is consistent with GSK3B's core
role in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0043066
label: negative regulation of apoptotic process
evidence_type: IDA
original_reference_id: PMID:14744935
qualifier: acts_upstream_of_or_within
review:
summary: >-
negative regulation of apoptotic process is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0043066 (negative regulation of apoptotic process), the IDA annotation
with qualifier acts_upstream_of_or_within from PMID:14744935 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0046827
label: positive regulation of protein export from nucleus
evidence_type: IDA
original_reference_id: PMID:14744935
qualifier: acts_upstream_of_or_within
review:
summary: >-
positive regulation of protein export from nucleus is retained as a non-core
biological-process annotation for GSK3B; it records a supported context, interaction,
localization, or pathway branch that is secondary to GSK3B catalytic kinase
activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling,
glycogen/insulin regulation, tau phosphorylation, protein-turnover control,
and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0046827 (positive regulation of protein export from nucleus), the IDA
annotation with qualifier acts_upstream_of_or_within from PMID:14744935 supports
retaining the annotation, but the term describes a context-specific outcome
or peripheral branch rather than the principal GSK3B function: ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. Keeping it as non-core
prevents broad pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0001837
label: epithelial to mesenchymal transition
evidence_type: IMP
original_reference_id: PMID:15448698
qualifier: involved_in
review:
summary: >-
epithelial to mesenchymal transition is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0001837 (epithelial to mesenchymal transition), the IMP annotation with
qualifier involved_in from PMID:15448698 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:15448698
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:15448698 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:15448698
qualifier: located_in
review:
summary: >-
nucleus is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005634 (nucleus), the IDA annotation with qualifier located_in from
PMID:15448698 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:15448698
qualifier: located_in
review:
summary: >-
cytoplasm is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005737 (cytoplasm), the IDA annotation with qualifier located_in from
PMID:15448698 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0016301
label: kinase activity
evidence_type: IDA
original_reference_id: PMID:15448698
qualifier: enables
review:
summary: >-
kinase activity is directionally related to GSK3B biology but is not the best
curation target; protein serine/threonine kinase activity better captures the
specific supported function or process.
action: MODIFY
reason: >-
For GO:0016301 (kinase activity), the IDA annotation with qualifier enables
from PMID:15448698 supports a relationship to GSK3B, but the current term is
less precise than protein serine/threonine kinase activity for the evidence
and for the synthesized core/non-core role of GSK3B. The MODIFY action preserves
the biological intent while pointing curators to the more informative GO term.
proposed_replacement_terms:
- id: GO:0004674
label: protein serine/threonine kinase activity
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0050321
label: tau-protein kinase activity
evidence_type: IDA
original_reference_id: PMID:16365045
qualifier: enables
review:
summary: >-
tau-protein kinase activity is retained as a core molecular-function annotation
for GSK3B; it captures activity or binding specificity within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0050321 (tau-protein kinase activity), the IDA annotation with qualifier
enables from PMID:16365045 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0031333
label: negative regulation of protein-containing complex assembly
evidence_type: IMP
original_reference_id: PMID:16188939
qualifier: involved_in
review:
summary: >-
negative regulation of protein-containing complex assembly is retained as a
non-core biological-process annotation for GSK3B; it records a supported context,
interaction, localization, or pathway branch that is secondary to GSK3B catalytic
kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex
signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover
control, and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0031333 (negative regulation of protein-containing complex assembly),
the IMP annotation with qualifier involved_in from PMID:16188939 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:19038973
qualifier: located_in
review:
summary: >-
cytoplasm is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005737 (cytoplasm), the IDA annotation with qualifier located_in from
PMID:19038973 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0021766
label: hippocampus development
evidence_type: IMP
original_reference_id: PMID:19581563
qualifier: involved_in
review:
summary: >-
hippocampus development is retained as a non-core biological-process annotation
for GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0021766 (hippocampus development), the IMP annotation with qualifier
involved_in from PMID:19581563 supports retaining the annotation, but the term
describes a context-specific outcome or peripheral branch rather than the principal
GSK3B function: ATP-dependent serine/threonine phosphorylation of primed protein
substrates, especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover
substrates. Keeping it as non-core prevents broad pathway participation from
being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0071109
label: superior temporal gyrus development
evidence_type: IMP
original_reference_id: PMID:19581563
qualifier: involved_in
review:
summary: >-
superior temporal gyrus development is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0071109 (superior temporal gyrus development), the IMP annotation with
qualifier involved_in from PMID:19581563 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0001954
label: positive regulation of cell-matrix adhesion
evidence_type: IMP
original_reference_id: PMID:18156211
qualifier: involved_in
review:
summary: >-
positive regulation of cell-matrix adhesion is retained as a non-core biological-process
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0001954 (positive regulation of cell-matrix adhesion), the IMP annotation
with qualifier involved_in from PMID:18156211 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0030877
label: beta-catenin destruction complex
evidence_type: IDA
original_reference_id: PMID:16188939
qualifier: part_of
review:
summary: >-
beta-catenin destruction complex is retained as a core cellular-component/localization
annotation for GSK3B; it captures site of action or component context within
the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0030877 (beta-catenin destruction complex), the IDA annotation with qualifier
part_of from PMID:16188939 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0045732
label: positive regulation of protein catabolic process
evidence_type: IC
original_reference_id: PMID:16188939
qualifier: involved_in
review:
summary: >-
positive regulation of protein catabolic process is retained as a core biological-process
annotation for GSK3B; it captures process participation within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0045732 (positive regulation of protein catabolic process), the IC annotation
with qualifier involved_in from PMID:16188939 is consistent with GSK3B's core
role in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:18787224
qualifier: located_in
review:
summary: >-
cytoplasm is retained as a core cellular-component/localization annotation for
GSK3B; it captures site of action or component context within the synthesized
core biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005737 (cytoplasm), the IDA annotation with qualifier located_in from
PMID:18787224 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: IDA
original_reference_id: PMID:11035810
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation
with qualifier enables from PMID:11035810 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0034236
label: protein kinase A catalytic subunit binding
evidence_type: IPI
original_reference_id: PMID:11035810
qualifier: enables
review:
summary: >-
protein kinase A catalytic subunit binding is retained as a non-core molecular-function
annotation for GSK3B; it records a supported context, interaction, localization,
or pathway branch that is secondary to GSK3B catalytic kinase activity, substrate
phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0034236 (protein kinase A catalytic subunit binding), the IPI annotation
with qualifier enables from PMID:11035810 supports retaining the annotation,
but the term describes a context-specific outcome or peripheral branch rather
than the principal GSK3B function: ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: IDA
original_reference_id: PMID:8638126
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation
with qualifier enables from PMID:8638126 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005977
label: glycogen metabolic process
evidence_type: IDA
original_reference_id: PMID:8638126
qualifier: involved_in
review:
summary: >-
glycogen metabolic process is retained as a core biological-process annotation
for GSK3B; it captures process participation within the synthesized core biology:
GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0005977 (glycogen metabolic process), the IDA annotation with qualifier
involved_in from PMID:8638126 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0008013
label: beta-catenin binding
evidence_type: IPI
original_reference_id: PMID:8638126
qualifier: enables
review:
summary: >-
beta-catenin binding is retained as a core molecular-function annotation for
GSK3B; it captures activity or binding specificity within the synthesized core
biology: GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0008013 (beta-catenin binding), the IPI annotation with qualifier enables
from PMID:8638126 is consistent with GSK3B's core role in ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. This action keeps the term because it
provides a specific, evidence-backed kinase/substrate, pathway, or localization
annotation rather than only a downstream phenotype or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0030877
label: beta-catenin destruction complex
evidence_type: IDA
original_reference_id: PMID:8638126
qualifier: part_of
review:
summary: >-
beta-catenin destruction complex is retained as a core cellular-component/localization
annotation for GSK3B; it captures site of action or component context within
the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0030877 (beta-catenin destruction complex), the IDA annotation with qualifier
part_of from PMID:8638126 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0031334
label: positive regulation of protein-containing complex assembly
evidence_type: IDA
original_reference_id: PMID:8638126
qualifier: involved_in
review:
summary: >-
positive regulation of protein-containing complex assembly is retained as a
non-core biological-process annotation for GSK3B; it records a supported context,
interaction, localization, or pathway branch that is secondary to GSK3B catalytic
kinase activity, substrate phosphorylation, Wnt/beta-catenin destruction-complex
signaling, glycogen/insulin regulation, tau phosphorylation, protein-turnover
control, and the cytosolic/nuclear sites where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0031334 (positive regulation of protein-containing complex assembly),
the IDA annotation with qualifier involved_in from PMID:8638126 supports retaining
the annotation, but the term describes a context-specific outcome or peripheral
branch rather than the principal GSK3B function: ATP-dependent serine/threonine
phosphorylation of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. Keeping it as non-core prevents broad
pathway participation from being promoted to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the ISS annotation
with qualifier enables from GO_REF:0000024 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:9482734
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:9482734 may reflect a real assay result or interaction, but this GO
term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0004674
label: protein serine/threonine kinase activity
evidence_type: IDA
original_reference_id: PMID:11104755
qualifier: enables
review:
summary: >-
protein serine/threonine kinase activity is retained as a core molecular-function
annotation for GSK3B; it captures activity or binding specificity within the
synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0004674 (protein serine/threonine kinase activity), the IDA annotation
with qualifier enables from PMID:11104755 is consistent with GSK3B's core role
in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0018105
label: peptidyl-serine phosphorylation
evidence_type: IDA
original_reference_id: PMID:11104755
qualifier: acts_upstream_of_or_within
review:
summary: >-
peptidyl-serine phosphorylation is retained as a core biological-process annotation
for GSK3B; it captures process participation within the synthesized core biology:
GSK3B catalytic kinase activity, substrate phosphorylation, Wnt/beta-catenin
destruction-complex signaling, glycogen/insulin regulation, tau phosphorylation,
protein-turnover control, and the cytosolic/nuclear sites where these reactions
occur.
action: ACCEPT
reason: >-
For GO:0018105 (peptidyl-serine phosphorylation), the IDA annotation with qualifier
acts_upstream_of_or_within from PMID:11104755 is consistent with GSK3B's core
role in ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
This action keeps the term because it provides a specific, evidence-backed kinase/substrate,
pathway, or localization annotation rather than only a downstream phenotype
or generic interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0035556
label: intracellular signal transduction
evidence_type: IDA
original_reference_id: PMID:14749367
qualifier: acts_upstream_of_or_within
review:
summary: >-
intracellular signal transduction is marked over-annotated for GSK3B because
this biological-process term is too generic, interaction-map-like, or weakly
informative relative to the gene-specific biology: GSK3B catalytic kinase activity,
substrate phosphorylation, Wnt/beta-catenin destruction-complex signaling, glycogen/insulin
regulation, tau phosphorylation, protein-turnover control, and the cytosolic/nuclear
sites where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0035556 (intracellular signal transduction), the IDA annotation with
qualifier acts_upstream_of_or_within from PMID:14749367 may reflect a real assay
result or interaction, but this GO term does not identify the specific kinase/substrate,
pathway, or localization annotation that explains GSK3B's role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. More informative gene-specific
annotations are present, so this is marked over-annotated rather than accepted
as a core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:9601641
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:9601641 may reflect a real assay result or interaction, but this GO
term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0030877
label: beta-catenin destruction complex
evidence_type: IDA
original_reference_id: PMID:9601641
qualifier: part_of
review:
summary: >-
beta-catenin destruction complex is retained as a core cellular-component/localization
annotation for GSK3B; it captures site of action or component context within
the synthesized core biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: ACCEPT
reason: >-
For GO:0030877 (beta-catenin destruction complex), the IDA annotation with qualifier
part_of from PMID:9601641 is consistent with GSK3B's core role in ATP-dependent
serine/threonine phosphorylation of primed protein substrates, especially Wnt/beta-catenin,
glycogen/insulin, tau, and protein-turnover substrates. This action keeps the
term because it provides a specific, evidence-backed kinase/substrate, pathway,
or localization annotation rather than only a downstream phenotype or generic
interaction label.
additional_reference_ids:
- PMID:14690523
- PMID:8638126
- PMID:11955436
- file:human/GSK3B/GSK3B-uniprot.txt
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:12927815
qualifier: enables
review:
summary: >-
protein binding is marked over-annotated for GSK3B because this molecular-function
term is too generic, interaction-map-like, or weakly informative relative to
the gene-specific biology: GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: MARK_AS_OVER_ANNOTATED
reason: >-
For GO:0005515 (protein binding), the IPI annotation with qualifier enables
from PMID:12927815 may reflect a real assay result or interaction, but this
GO term does not identify the specific kinase/substrate, pathway, or localization
annotation that explains GSK3B's role in ATP-dependent serine/threonine phosphorylation
of primed protein substrates, especially Wnt/beta-catenin, glycogen/insulin,
tau, and protein-turnover substrates. More informative gene-specific annotations
are present, so this is marked over-annotated rather than accepted as a core
function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-notes.md
- term:
id: GO:0051059
label: NF-kappaB binding
evidence_type: IPI
original_reference_id: PMID:15465828
qualifier: enables
review:
summary: >-
NF-kappaB binding is retained as a non-core molecular-function annotation for
GSK3B; it records a supported context, interaction, localization, or pathway
branch that is secondary to GSK3B catalytic kinase activity, substrate phosphorylation,
Wnt/beta-catenin destruction-complex signaling, glycogen/insulin regulation,
tau phosphorylation, protein-turnover control, and the cytosolic/nuclear sites
where these reactions occur.
action: KEEP_AS_NON_CORE
reason: >-
For GO:0051059 (NF-kappaB binding), the IPI annotation with qualifier enables
from PMID:15465828 supports retaining the annotation, but the term describes
a context-specific outcome or peripheral branch rather than the principal GSK3B
function: ATP-dependent serine/threonine phosphorylation of primed protein substrates,
especially Wnt/beta-catenin, glycogen/insulin, tau, and protein-turnover substrates.
Keeping it as non-core prevents broad pathway participation from being promoted
to core function.
additional_reference_ids:
- file:human/GSK3B/GSK3B-uniprot.txt
- file:human/GSK3B/GSK3B-notes.md
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with
GO terms
findings: []
- id: GO_REF:0000024
title: Manual transfer of experimentally-verified manual GO annotation data to
orthologs by curator judgment of sequence similarity
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: >-
High-use curator-reviewed orthology-transfer provenance for GSK3B annotations;
retained as propagated evidence rather than direct experimental support. Action
counts in this review: {'KEEP_AS_NON_CORE': 23, 'ACCEPT': 3, 'MARK_AS_OVER_ANNOTATED':
1}.
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: >-
PANTHER/phylogenetic inference provenance used for conserved GSK3B kinase, localization,
and pathway annotations. Action counts in this review: {'KEEP_AS_NON_CORE':
7, 'ACCEPT': 11}.
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular
Location vocabulary mapping, accompanied by conservative changes to GO terms
applied by UniProt
findings: []
- id: GO_REF:0000052
title: Gene Ontology annotation based on curation of immunofluorescence data
findings: []
- id: GO_REF:0000107
title: Automatic transfer of experimentally verified manual GO annotation data
to orthologs using Ensembl Compara
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: >-
High-use Compara orthology-transfer provenance for many non-core and some accepted
GSK3B annotations; useful for interpreting propagated annotation strength. Action
counts in this review: {'ACCEPT': 6, 'KEEP_AS_NON_CORE': 35}.
- id: GO_REF:0000108
title: Automatic assignment of GO terms using logical inference, based on on
inter-ontology links
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning
models
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: >-
ARBA electronic annotation provenance; relevant mainly for non-core or over-annotated
propagated calls and interpreted cautiously. Action counts in this review: {'MARK_AS_OVER_ANNOTATED':
1, 'KEEP_AS_NON_CORE': 3, 'ACCEPT': 2}.
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: >-
Combined automated annotation provenance; relevant mainly as electronic support
and interpreted cautiously in the review. Action counts in this review: {'MODIFY':
1, 'ACCEPT': 6}.
- id: PMID:10428961
title: Axin and Frat1 interact with dvl and GSK, bridging Dvl to GSK in
Wnt-mediated regulation of LEF-1.
findings: []
- id: PMID:10481074
title: A GSK3-binding peptide from FRAT1 selectively inhibits the
GSK3-catalysed phosphorylation of axin and beta-catenin.
findings: []
- id: PMID:11004522
title: Cloning and characterization of a novel human ninein protein that
interacts with the glycogen synthase kinase 3beta.
findings: []
- id: PMID:11035810
title: Phosphorylation and inactivation of glycogen synthase kinase 3 by
protein kinase A.
findings: []
- id: PMID:11104755
title: Substitution of a glycogen synthase kinase-3beta phosphorylation site
in presenilin 1 separates presenilin function from beta-catenin signaling.
findings: []
- id: PMID:11738041
title: The structure of phosphorylated GSK-3beta complexed with a peptide,
FRATtide, that inhibits beta-catenin phosphorylation.
findings: []
- id: PMID:11955436
title: Control of beta-catenin phosphorylation/degradation by a dual-kinase
mechanism.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Primary beta-catenin phosphorylation/degradation paper
supporting GSK-3 action downstream of CKI priming in Wnt/beta-catenin
regulation.
- id: PMID:12223487
title: The regulation of glycogen synthase kinase-3 nuclear export by
Frat/GBP.
findings: []
- id: PMID:12421363
title: Axin negatively affects tau phosphorylation by glycogen synthase kinase
3beta.
findings: []
- id: PMID:12434148
title: Crystal structure of an activated Akt/protein kinase B ternary complex
with GSK3-peptide and AMP-PNP.
findings: []
- id: PMID:12927815
title: 'Molecular characterization of human ninein protein: two distinct subdomains
required for centrosomal targeting and regulating signals in cell cycle.'
findings: []
- id: PMID:14690523
title: Primed phosphorylation of tau at Thr231 by glycogen synthase kinase
3beta (GSK3beta) plays a critical role in regulating tau's ability to bind
and stabilize microtubules.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Primary tau-phosphorylation study supporting GSK3B tau-protein
kinase activity and reduced tau microtubule binding/stabilization.
- id: PMID:14744935
title: Endoplasmic reticulum stress induces p53 cytoplasmic localization and
prevents p53-dependent apoptosis by a pathway involving glycogen synthase
kinase-3beta.
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: >-
GOA original evidence for ER-stress/p53/apoptosis-related GSK3B annotations;
supports a real but non-core stress-response branch. Action counts in this review:
{'MARK_AS_OVER_ANNOTATED': 1, 'KEEP_AS_NON_CORE': 4, 'ACCEPT': 4}.
- id: PMID:14749367
title: Regulation of apoptosis by the Ft1 protein, a new modulator of protein
kinase B/Akt.
findings: []
- id: PMID:15147888
title: A novel ninein-interaction protein, CGI-99, blocks ninein
phosphorylation by GSK3beta and is highly expressed in brain tumors.
findings: []
- id: PMID:15448698
title: Dual regulation of Snail by GSK-3beta-mediated phosphorylation in
control of epithelial-mesenchymal transition.
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Primary Snail/EMT paper supporting a non-core EMT and
protein-localization/degradation branch.
- id: PMID:15465828
title: Phosphorylation of serine 468 by GSK-3beta negatively regulates basal
p65 NF-kappaB activity.
findings: []
- id: PMID:15752768
title: Characterization of two non-testis-specific CABYR variants that bind to
GSK3beta with a proline-rich extensin-like domain.
findings: []
- id: PMID:16188939
title: The adenomatous polyposis coli protein (APC) exists in two distinct
soluble complexes with different functions.
findings: []
- id: PMID:16282323
title: Evidence that Ser87 of BimEL is phosphorylated by Akt and regulates
BimEL apoptotic function.
findings: []
- id: PMID:16315267
title: GSK3B polymorphisms alter transcription and splicing in Parkinson's
disease.
findings: []
- id: PMID:16365045
title: The low density lipoprotein receptor-related protein 6 interacts with
glycogen synthase kinase 3 and attenuates activity.
findings: []
- id: PMID:16705181
title: Multisite protein kinase A and glycogen synthase kinase 3beta
phosphorylation leads to Gli3 ubiquitination by SCFbetaTrCP.
findings: []
- id: PMID:16890161
title: Caveolin is necessary for Wnt-3a-dependent internalization of LRP6 and
accumulation of beta-catenin.
findings: []
- id: PMID:16981698
title: GSKIP is homologous to the Axin GSK3beta interaction domain and
functions as a negative regulator of GSK3beta.
findings: []
- id: PMID:17050006
title: Glycogen synthase kinase-3beta binds to E2F1 and regulates its
transcriptional activity.
findings: []
- id: PMID:17078951
title: PKA modulates GSK-3beta- and cdk5-catalyzed phosphorylation of tau in
site- and kinase-specific manners.
findings: []
- id: PMID:17139249
title: GSK-3beta-regulated interaction of BICD with dynein is involved in
microtubule anchorage at centrosome.
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: >-
GOA original evidence for BICD/dynein, microtubule anchorage, and centrosome-related
GSK3B annotations; supports non-core cytoskeletal context. Action counts in
this review: {'MARK_AS_OVER_ANNOTATED': 1, 'KEEP_AS_NON_CORE': 4, 'ACCEPT':
1}.
- id: PMID:17317006
title: 14-3-3zeta facilitates GSK3beta-catalyzed tau phosphorylation in
HEK-293 cells by a mechanism that requires phosphorylation of GSK3beta on
Ser9.
findings: []
- id: PMID:17318191
title: Bcr-Abl stabilizes beta-catenin in chronic myeloid leukemia through its
tyrosine phosphorylation.
findings: []
- id: PMID:17510365
title: Wilms tumor suppressor WTX negatively regulates WNT/beta-catenin
signaling.
findings: []
- id: PMID:17601533
title: Two functionally distinct Axin-like proteins regulate canonical Wnt
signaling in C. elegans.
findings: []
- id: PMID:17681942
title: Regulation of human cytidine triphosphate synthetase 1 by glycogen
synthase kinase 3.
findings: []
- id: PMID:17989287
title: Activation of glycogen synthase kinase-3 inhibits long-term
potentiation with synapse-associated impairments.
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: >-
GOA original evidence for synaptic/LTP-related GSK3B annotations; supports non-core
neuronal signaling consequences. Action counts in this review: {'KEEP_AS_NON_CORE':
6}.
- id: PMID:18045539
title: 'Integrating patterning signals: Wnt/GSK3 regulates the duration of the BMP/Smad1
signal.'
findings: []
- id: PMID:18156211
title: 'Regulation of endothelial cell cytoskeletal reorganization by a secreted
frizzled-related protein-1 and frizzled 4- and frizzled 7-dependent pathway: role
in neovessel formation.'
findings: []
- id: PMID:18268107
title: Microtubule stabilization specifies initial neuronal polarization.
findings: []
- id: PMID:18348280
title: Importance of autophosphorylation at Ser186 in the A-loop of salt
inducible kinase 1 for its sustained kinase activity.
findings: []
- id: PMID:18505846
title: p53 stabilization in response to DNA damage requires Akt/PKB and
DNA-PK.
findings: []
- id: PMID:18593713
title: Smad7 stabilizes beta-catenin binding to E-cadherin complex and
promotes cell-cell adhesion.
findings: []
- id: PMID:18687691
title: Regulation of Akt/FOXO3a/GSK-3beta/AR signaling network by isoflavone
in prostate cancer cells.
findings: []
- id: PMID:18787224
title: Constitutive activation of the Wnt canonical pathway in mantle cell
lymphoma.
findings: []
- id: PMID:18846110
title: Identification of an antiapoptotic protein complex at death receptors.
findings: []
- id: PMID:19038973
title: Identification of WNT/beta-CATENIN signaling pathway components in
human cumulus cells.
findings: []
- id: PMID:19131971
title: The Axin1 scaffold protein promotes formation of a degradation complex
for c-Myc.
findings: []
- id: PMID:19202075
title: Beta-arrestin links endothelin A receptor to beta-catenin signaling to
induce ovarian cancer cell invasion and metastasis.
findings: []
- id: PMID:19249679
title: Oncogenic function of ATDC in pancreatic cancer through Wnt pathway
activation and beta-catenin stabilization.
findings: []
- id: PMID:19303846
title: Disrupted in schizophrenia 1 regulates neuronal progenitor
proliferation via modulation of GSK3beta/beta-catenin signaling.
findings: []
- id: PMID:19364825
title: Identification of domains responsible for ubiquitin-dependent
degradation of dMyc by glycogen synthase kinase 3beta and casein kinase 1
kinases.
findings: []
- id: PMID:19366350
title: 'Glycogen synthase kinase 3: more than a namesake.'
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Review supporting broad GSK3 pathway context in metabolism,
Wnt, tau, diabetes, and Alzheimer disease.
- id: PMID:19411070
title: Stabilization of snail by NF-kappaB is required for
inflammation-induced cell migration and invasion.
findings: []
- id: PMID:19581563
title: Association of GSK3beta polymorphisms with brain structural changes in
major depressive disorder.
findings: []
- id: PMID:19706605
title: GSK-3 phosphorylates delta-catenin and negatively regulates its
stability via ubiquitination/proteosome-mediated proteolysis.
findings: []
- id: PMID:19759537
title: Tankyrase inhibition stabilizes axin and antagonizes Wnt signalling.
findings: []
- id: PMID:19830702
title: GSKIP, an inhibitor of GSK3beta, mediates the N-cadherin/beta-catenin
pool in the differentiation of SH-SY5Y cells.
findings: []
- id: PMID:20007971
title: Glycogen synthase kinase 3beta interaction protein functions as an
A-kinase anchoring protein.
findings: []
- id: PMID:20080667
title: Role of DAB2IP in modulating epithelial-to-mesenchymal transition and
prostate cancer metastasis.
findings: []
- id: PMID:20368287
title: Interactome mapping of the phosphatidylinositol 3-kinase-mammalian
target of rapamycin pathway identifies deformed epidermal autoregulatory
factor-1 as a new glycogen synthase kinase-3 interactor.
findings: []
- id: PMID:20389281
title: The SNAG domain of Snail1 functions as a molecular hook for recruiting
lysine-specific demethylase 1.
findings: []
- id: PMID:20856200
title: Vimentin is a novel AKT1 target mediating motility and invasion.
findings: []
- id: PMID:20864106
title: PTEN differentially regulates expressions of ICAM-1 and VCAM-1 through
PI3K/Akt/GSK-3Ξ²/GATA-6 signaling pathways in TNF-Ξ±-activated human
endothelial cells.
findings: []
- id: PMID:20937854
title: ErbB2 receptor controls microtubule capture by recruiting ACF7 to the
plasma membrane of migrating cells.
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: >-
GOA original evidence for localization, phosphorylation, and microtubule-process
annotations in an ErbB2/ACF7 migration context; supports a cytoskeletal branch.
Action counts in this review: {'ACCEPT': 4}.
- id: PMID:21029237
title: 'Modulation of tau phosphorylation by the kinase PKR: implications in Alzheimer''s
disease.'
findings: []
- id: PMID:21118991
title: The EDD E3 ubiquitin ligase ubiquitinates and up-regulates
beta-catenin.
findings: []
- id: PMID:21217772
title: Glycogen synthase kinase-3Ξ² is a crucial mediator of signal-induced
RelB degradation.
findings: []
- id: PMID:21242974
title: Methylation by protein arginine methyltransferase 1 increases stability
of Axin, a negative regulator of Wnt signaling.
findings: []
- id: PMID:21343617
title: ER stress inhibits mTORC2 and Akt signaling through GSK-3Ξ²-mediated
phosphorylation of rictor.
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Primary ER-stress/mTORC2 paper supporting non-core RICTOR
phosphorylation and TORC2/Akt signaling regulation.
- id: PMID:21399614
title: Novel asymmetrically localizing components of human centrosomes
identified by complementary proteomics methods.
findings: []
- id: PMID:21711983
title: A role for Akt and glycogen synthase kinase-3 as integrators of
dopamine and serotonin neurotransmission in mental health.
findings: []
- id: PMID:21743491
title: Microsomal prostaglandin E synthase-1 promotes hepatocarcinogenesis
through activation of a novel EGR1/Ξ²-catenin signaling axis.
findings: []
- id: PMID:21900206
title: A directed protein interaction network for investigating intracellular
signal transduction.
findings: []
- id: PMID:21985244
title: Stimulatory effect of Ξ±-synuclein on the tau-phosphorylation by GSK-3Ξ².
findings: []
- id: PMID:21988832
title: Toward an understanding of the protein interaction network of the human
liver.
findings: []
- id: PMID:22470507
title: Oncogenic function of DACT1 in colon cancer through the regulation of
Ξ²-catenin.
findings: []
- id: PMID:22539723
title: GSK3-TIP60-ULK1 signaling pathway links growth factor deprivation to
autophagy.
findings: []
- id: PMID:22660580
title: F-box protein FBXL19-mediated ubiquitination and degradation of the
receptor for IL-33 limits pulmonary inflammation.
findings: []
- id: PMID:22682247
title: Wnt signaling through inhibition of Ξ²-catenin degradation in an intact
Axin1 complex.
findings: []
- id: PMID:22699938
title: Kindlin 2 forms a transcriptional complex with Ξ²-catenin and TCF4 to
enhance Wnt signalling.
findings: []
- id: PMID:22773187
title: Dual functions of DP1 promote biphasic Wnt-on and Wnt-off states during
anteroposterior neural patterning.
findings: []
- id: PMID:22988876
title: The importance of Wnt signalling for neurodegeneration in Parkinson's
disease.
findings: []
- id: PMID:23010592
title: NOK/STYK1 interacts with GSK-3Ξ² and mediates Ser9 phosphorylation
through activated Akt.
findings: []
- id: PMID:23184662
title: Phosphorylation of eukaryotic elongation factor 2 (eEF2) by cyclin
A-cyclin-dependent kinase 2 regulates its inhibition by eEF2 kinase.
findings: []
- id: PMID:23455922
title: Interlaboratory reproducibility of large-scale human protein-complex
analysis by standardized AP-MS.
findings: []
- id: PMID:23602568
title: The protein interaction landscape of the human CMGC kinase group.
findings: []
- id: PMID:24023731
title: miR-346 regulates osteogenic differentiation of human bone
marrow-derived mesenchymal stem cells by targeting the Wnt/Ξ²-catenin
pathway.
findings: []
- id: PMID:24115276
title: The regulation and deregulation of Wnt signaling by PARK genes in
health and disease.
findings: []
- id: PMID:24165324
title: Leucine-rich repeat kinaseΒ 2 regulates tau phosphorylation through
direct activation of glycogen synthase kinase-3Ξ².
findings: []
- id: PMID:24391509
title: NCYM, a Cis-antisense gene of MYCN, encodes a de novo evolved protein
that inhibits GSK3Ξ² resulting in the stabilization of MYCN in human
neuroblastomas.
findings: []
- id: PMID:24431302
title: Wnt signaling in midbrain dopaminergic neuron development and
regenerative medicine for Parkinson's disease.
findings: []
- id: PMID:24879152
title: Phosphorylation of NBR1 by GSK3 modulates protein aggregation.
findings: []
- id: PMID:24976009
title: YAP/TAZ incorporation in the Ξ²-catenin destruction complex orchestrates
the Wnt response.
findings: []
- id: PMID:25118933
title: The protease Omi regulates mitochondrial biogenesis through the
GSK3Ξ²/PGC-1Ξ± pathway.
findings: []
- id: PMID:25169422
title: HN1 negatively influences the Ξ²-catenin/E-cadherin interaction, and
contributes to migration in prostate cells.
findings: []
- id: PMID:25241761
title: Using an in situ proximity ligation assay to systematically profile
endogenous protein-protein interactions in a pathway network.
findings: []
- id: PMID:25733715
title: GSK3- and PRMT-1-dependent modifications of desmoplakin control
desmoplakin-cytoskeleton dynamics.
findings: []
- id: PMID:25827072
title: FBXO11 promotes ubiquitination of the Snail family of transcription
factors in cancer progression and epidermal development.
findings: []
- id: PMID:25897075
title: Rictor Undergoes Glycogen Synthase Kinase 3 (GSK3)-dependent,
FBXW7-mediated Ubiquitination and Proteasomal Degradation.
findings: []
- id: PMID:25920809
title: GSKIP- and GSK3-mediated anchoring strengthens cAMP/PKA/Drp1 axis
signaling in the regulation of mitochondrial elongation.
findings: []
- id: PMID:26049140
title: A WNT1-regulated developmental gene cascade prevents dopaminergic
neurodegeneration in adult En1(+/-) mice.
findings: []
- id: PMID:26315788
title: miRNA-99b-3p functions as a potential tumor suppressor by targeting
glycogen synthase kinase-3Ξ² in oral squamous cell carcinoma Tca-8113 cells.
findings: []
- id: PMID:26496610
title: A human interactome in three quantitative dimensions organized by
stoichiometries and abundances.
findings: []
- id: PMID:26618561
title: Direct High Affinity Interaction between AΞ²42 and GSK3Ξ± Stimulates
Hyperphosphorylation of Tau. A New Molecular Link in Alzheimer's Disease?
findings: []
- id: PMID:27050373
title: 'The role of glycogen synthase kinase-3Ξ² (GSK-3Ξ²) in endometrial carcinoma:
A carcinogenesis, progression, prognosis, and target therapy marker.'
findings: []
- id: PMID:27484798
title: The A-Kinase Anchoring Protein (AKAP) Glycogen Synthase Kinase 3Ξ²
Interaction Protein (GSKIP) Regulates Ξ²-Catenin through Its Interactions
with Both Protein Kinase A (PKA) and GSK3Ξ².
findings: []
- id: PMID:27494834
title: GSK3Ξ² inactivation promotes the oncogenic functions of EZH2 and
enhances methylation of H3K27 in human breast cancers.
findings: []
- id: PMID:27601169
title: Vitamin D receptor is a novel transcriptional regulator for Axin1.
findings: []
- id: PMID:27846906
title: Upregulation of miR-501-5p activates the wnt/Ξ²-catenin signaling
pathway and enhances stem cell-like phenotype in gastric cancer.
findings: []
- id: PMID:28122350
title: Transcriptional suppression of microRNA-27a contributes to laryngeal
cancer differentiation via GSK-3Ξ²-involved Wnt/Ξ²-catenin pathway.
findings: []
- id: PMID:28386764
title: Roles of tau protein in health and disease.
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: >-
GOA original evidence for tau-health/disease context; supports tau-relevant
GSK3B annotations but is treated as contextual rather than sole primary evidence.
Action counts in this review: {'ACCEPT': 3}.
- id: PMID:28829046
title: Twa1/Gid8 is a Ξ²-catenin nuclear retention factor in Wnt signaling and
colorectal tumorigenesis.
findings: []
- id: PMID:28903391
title: Cancer/testis antigen PIWIL2 suppresses circadian rhythms by regulating
the stability and activity of BMAL1 and CLOCK.
findings: []
- id: PMID:28992046
title: Phosphorylated E2F1 is stabilized by nuclear USP11 to drive Peg10 gene
expression and activate lung epithelial cells.
findings: []
- id: PMID:29059170
title: SPSB3 targets SNAIL for degradation in GSK-3Ξ² phosphorylation-dependent
manner and regulates metastasis.
findings: []
- id: PMID:29142209
title: Fbxo4-mediated degradation of Fxr1 suppresses tumorigenesis in head and
neck squamous cell carcinoma.
findings: []
- id: PMID:29568061
title: An AP-MS- and BioID-compatible MAC-tag enables comprehensive mapping of
protein interactions and subcellular localizations.
findings: []
- id: PMID:30556160
title: miR-219-5p inhibits tau phosphorylation by targeting TTBK1 and GSK-3Ξ²
in Alzheimer's disease.
findings: []
- id: PMID:31073040
title: LMBR1L regulates lymphopoiesis through Wnt/Ξ²-catenin signaling.
findings: []
- id: PMID:31640277
title: GSKIP-Mediated Anchoring Increases Phosphorylation of Tau by PKA but
Not by GSK3beta via cAMP/PKA/GSKIP/GSK3/Tau Axis Signaling in Cerebrospinal
Fluid and iPS Cells in Alzheimer Disease.
findings: []
- id: PMID:32707033
title: Kinase Interaction Network Expands Functional and Disease Roles of
Human Kinases.
findings: []
- id: PMID:33248025
title: Phosphoregulation of Phase Separation by the SARS-CoV-2Β N Protein
Suggests a Biophysical Basis for its Dual Functions.
findings: []
- id: PMID:33961781
title: Dual proteome-scale networks reveal cell-specific remodeling of the
human interactome.
findings: []
- id: PMID:34058472
title: A catenin of the plakophilin-subfamily, Pkp3, responds to canonical-Wnt
pathway components and signals.
findings: []
- id: PMID:34232536
title: Interactomes of SARS-CoV-2 and human coronaviruses reveal host factors
potentially affecting pathogenesis.
findings: []
- id: PMID:35063084
title: Tau interactome maps synaptic and mitochondrial processes associated
with neurodegeneration.
findings: []
- id: PMID:35271311
title: 'OpenCell: Endogenous tagging for the cartography of human cellular organization.'
findings: []
- id: PMID:35512704
title: Systematic discovery of mutation-directed neo-protein-protein
interactions in cancer.
findings: []
- id: PMID:35606353
title: GSK3Ξ² palmitoylation mediated by ZDHHC4 promotes tumorigenicity of
glioblastoma stem cells in temozolomide-resistant glioblastoma through the
EZH2-STAT3 axis.
findings: []
- id: PMID:40274799
title: TTC36 promotes proliferation and drug resistance in hepatocellular
carcinoma cells by inhibiting c-Myc degradation.
findings: []
- id: PMID:8638126
title: Binding of GSK3beta to the APC-beta-catenin complex and regulation of
complex assembly.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Primary Wnt/APC/beta-catenin paper supporting GSK3B binding to
the APC-beta-catenin complex and phosphorylation-dependent beta-catenin
regulation.
- id: PMID:8725894
title: Glycogen synthase kinase 3 alpha and 3 beta do not colocalize with
neurofibrillary tangles.
findings: []
- id: PMID:9072970
title: Nuclear export of NF-ATc enhanced by glycogen synthase kinase-3.
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Primary NFAT paper supporting a non-core transcription-factor
nuclear-export branch.
- id: PMID:9482734
title: Axin, a negative regulator of the Wnt signaling pathway, forms a
complex with GSK-3beta and beta-catenin and promotes GSK-3beta-dependent
phosphorylation of beta-catenin.
findings: []
- id: PMID:9601641
title: Downregulation of beta-catenin by human Axin and its association with
the APC tumor suppressor, beta-catenin and GSK3 beta.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
GOA original evidence for Axin/APC/beta-catenin association and beta-catenin
downregulation, supporting core Wnt/destruction-complex GSK3B biology. Action
counts in this review: {'ACCEPT': 4, 'MARK_AS_OVER_ANNOTATED': 1}.
- id: PMID:9731200
title: Human dynamin-like protein interacts with the glycogen synthase kinase
3beta.
findings: []
- id: Reactome:R-HSA-1504186
title: DVL recruits GSK3beta:AXIN1 to the receptor complex
findings: []
- id: Reactome:R-HSA-195251
title: Assembly of the destruction complex
findings: []
- id: Reactome:R-HSA-195275
title: Phosphorylation of APC component of the destruction complex
findings: []
- id: Reactome:R-HSA-195280
title: Dissociation of beta-catenin from Axin and association of beta catenin
with phospho-(20 aa) APC in the detruction complex
findings: []
- id: Reactome:R-HSA-195283
title: Phosphorylation of phospho- (Ser45, Thr41) beta-catenin at Ser37 by
GSK-3
findings: []
- id: Reactome:R-HSA-195287
title: Phosphorylation of phospho-(Ser45 ) at Thr 41 by GSK-3
findings: []
- id: Reactome:R-HSA-195300
title: Phosphorylation of phospho-(Ser45,Thr41,Ser37) at Ser33 by GSK-3
findings: []
- id: Reactome:R-HSA-195304
title: Association of beta-catenin with the destruction complex
findings: []
- id: Reactome:R-HSA-195318
title: Phosphorylation of beta-catenin at Ser45 by CK1 alpha
findings: []
- id: Reactome:R-HSA-201677
title: Phosphorylation of LRP5/6 cytoplasmic domain by membrane-associated
GSK3beta
findings: []
- id: Reactome:R-HSA-201685
title: Beta-catenin is released from the destruction complex
findings: []
- id: Reactome:R-HSA-2130279
title: Association of beta-catenin with the RBX1:SCF(beta-TrCP1) ubiquitin
ligase complex
findings: []
- id: Reactome:R-HSA-2130282
title: Degradation of ubiquitinated beta catenin by the proteasome
findings: []
- id: Reactome:R-HSA-2130286
title: Multi-ubiquitination of phospho-beta-catenin by RBX1:SCF(beta-TrCP1)
findings: []
- id: Reactome:R-HSA-2399966
title: AKT1 E17K mutant phosphorylates GSK3
findings: []
- id: Reactome:R-HSA-3371435
title: Constitutive phosphorylation by GSK3
findings: []
- id: Reactome:R-HSA-3371453
title: Regulation of HSF1-mediated heat shock response
findings: []
- id: Reactome:R-HSA-399951
title: Phosphorylation of CRMPs by GSK3beta
findings: []
- id: Reactome:R-HSA-4641262
title: Disassembly of the destruction complex and recruitment of AXIN to the
membrane
findings: []
- id: Reactome:R-HSA-4791278
title: APC truncation mutants have impaired AXIN binding
findings: []
- id: Reactome:R-HSA-4827388
title: CTNNB1 S45 mutants aren't phosphorylated by CK1alpha
findings: []
- id: Reactome:R-HSA-4839634
title: CTNNB1 S33 mutants aren't phosphorylated by GSK3beta
findings: []
- id: Reactome:R-HSA-4839635
title: CTNNB1 S37 mutants aren't phosphorylated by GSK3beta
findings: []
- id: Reactome:R-HSA-4839638
title: CTNNB1 T41 mutants aren't phosphorylated by GSK3beta
findings: []
- id: Reactome:R-HSA-4839734
title: AXIN mutants destabilize the destruction complex
findings: []
- id: Reactome:R-HSA-4839746
title: Truncated AMER1 mutants destabilize the destruction complex
findings: []
- id: Reactome:R-HSA-5229343
title: AXIN is phosphorylated in the destruction complex
findings: []
- id: Reactome:R-HSA-5323526
title: FRAT proteins bind GSK3beta
findings: []
- id: Reactome:R-HSA-5339713
title: Misspliced GSK3beta mutants stabilize beta-catenin levels
findings: []
- id: Reactome:R-HSA-5368596
title: WNT3A stimulates the caveolin-dependent internalization of FZD5:p-LRP6
findings: []
- id: Reactome:R-HSA-5610732
title: GSK3 phosphorylates p-GLI3
findings: []
- id: Reactome:R-HSA-9683610
title: Maturation of nucleoprotein
findings: []
- id: Reactome:R-HSA-9683664
title: GSK3 phosphorylates Nucleoprotein
findings: []
- id: Reactome:R-HSA-9687724
title: GSK3B binds GSKi
findings: []
- id: Reactome:R-HSA-9694631
title: Maturation of nucleoprotein
findings: []
- id: Reactome:R-HSA-9729260
title: GSK3 phosphorylates nucleoprotein
findings: []
- id: Reactome:R-HSA-9762094
title: GSK3B phosphorylates p-NFE2L2
findings: []
- id: Reactome:R-HSA-9824995
title: GSK3B phosphorylates p-S409 MITF-M at S397, S401 and S405
findings: []
- id: Reactome:R-HSA-9824999
title: GSK3B phosphorylates p-S73 MITF-M at residue S69
findings: []
- id: Reactome:R-HSA-9929360
title: GSK3B phosphorylates CD274
findings: []
- id: Reactome:R-HSA-9943675
title: GSK3B phosphorylates CDC25A
findings: []
- id: Reactome:R-NUL-1458902
title: frog CK1gamma phosphorylates LRP5/6
findings: []
- id: Reactome:R-NUL-209146
title: Murine Axin1 is further phosphorylated by Human GSK3beta
findings: []
- id: Reactome:R-NUL-9008555
title: Runx2 binds GSK3B
findings: []
- id: Reactome:R-NUL-9008636
title: GSK3B phosphorylates Runx2
findings: []
- id: file:human/GSK3B/GSK3B-uniprot.txt
title: UniProt text export for GSK3B (P49841)
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Local UniProt record directly summarizes GSK3B kinase
activity, substrate specificity, catalytic reactions, Wnt/beta-catenin,
glycogen/insulin, tau, regulation, and localization evidence.
- id: file:human/GSK3B/GSK3B-notes.md
title: Manual GSK3B review notes
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Manual notes document the deep-research timeout and summarize
cached UniProt, PANTHER, GOA, Reactome, and publication evidence used for
this review.
core_functions:
- description: ATP-dependent protein serine/threonine kinase activity with
primed-substrate preference, regulated by activating Tyr-216 phosphorylation
and inhibitory Ser-9 phosphorylation.
supported_by:
- reference_id: file:human/GSK3B/GSK3B-uniprot.txt
supporting_text: Constitutively active protein kinase
- reference_id: file:human/GSK3B/GSK3B-uniprot.txt
supporting_text: L-seryl-[protein] + ATP
- reference_id: file:human/GSK3B/GSK3B-uniprot.txt
supporting_text: Activated by phosphorylation at Tyr-216
- reference_id: file:human/GSK3B/GSK3B-uniprot.txt
supporting_text: inhibited by phosphorylation at Ser-9
molecular_function:
id: GO:0004674
label: protein serine/threonine kinase activity
directly_involved_in:
- id: GO:0006468
label: protein phosphorylation
- id: GO:0018105
label: peptidyl-serine phosphorylation
- id: GO:0046777
label: protein autophosphorylation
locations:
- id: GO:0005829
label: cytosol
- id: GO:0005737
label: cytoplasm
- id: GO:0005634
label: nucleus
- description: Tau-protein kinase activity relevant to Alzheimer disease,
phosphorylating MAPT/tau and reducing tau microtubule binding and
stabilization.
supported_by:
- reference_id: file:human/GSK3B/GSK3B-uniprot.txt
supporting_text: L-seryl-[tau protein] + ATP
- reference_id: file:human/GSK3B/GSK3B-uniprot.txt
supporting_text: L-threonyl-[tau protein] + ATP
- reference_id: file:human/GSK3B/GSK3B-uniprot.txt
supporting_text: Phosphorylates MAPT/TAU on
- reference_id: PMID:14690523
supporting_text: tau's ability to bind and stabilize microtubules
- reference_id: PMID:14690523
supporting_text: GSK3beta plays a critical role
molecular_function:
id: GO:0050321
label: tau-protein kinase activity
directly_involved_in:
- id: GO:0070507
label: regulation of microtubule cytoskeleton organization
- id: GO:0032886
label: regulation of microtubule-based process
- id: GO:0010975
label: regulation of neuron projection development
locations:
- id: GO:0005829
label: cytosol
- description: Canonical Wnt/beta-catenin negative regulation through
beta-catenin binding, beta-catenin destruction-complex participation, CTNNB1
phosphorylation, and proteasomal substrate turnover.
supported_by:
- reference_id: file:human/GSK3B/GSK3B-uniprot.txt
supporting_text: phosphorylates the N-terminus of CTNNB1 leading to its
degradation
- reference_id: PMID:8638126
supporting_text: APC binds to another component of the WINGLESS pathway
- reference_id: PMID:11955436
supporting_text: Wnt regulation of beta-catenin degradation
- reference_id: PMID:11955436
supporting_text: subsequent GSK-3 phosphorylation
molecular_function:
id: GO:0008013
label: beta-catenin binding
directly_involved_in:
- id: GO:0090090
label: negative regulation of canonical Wnt signaling pathway
- id: GO:0032436
label: positive regulation of proteasomal ubiquitin-dependent protein
catabolic process
- id: GO:0043161
label: proteasome-mediated ubiquitin-dependent protein catabolic process
locations:
- id: GO:0005829
label: cytosol
in_complex:
id: GO:0030877
label: beta-catenin destruction complex
- description: Insulin-linked glycogen-metabolism regulation by phosphorylation
and inhibition of glycogen synthase, contributing to negative control of
glycogen biosynthesis.
supported_by:
- reference_id: file:human/GSK3B/GSK3B-uniprot.txt
supporting_text: phosphorylating and inactivating glycogen synthase
- reference_id: file:human/GSK3B/GSK3B-uniprot.txt
supporting_text: insulin regulation of glycogen synthesis
- reference_id: file:human/GSK3B/GSK3B-uniprot.txt
supporting_text: phosphorylating and inhibiting GYS1 activity
molecular_function:
id: GO:0004674
label: protein serine/threonine kinase activity
directly_involved_in:
- id: GO:0005977
label: glycogen metabolic process
- id: GO:0045719
label: negative regulation of glycogen biosynthetic process
- id: GO:2000466
label: negative regulation of glycogen (starch) synthase activity
- id: GO:0008286
label: insulin receptor signaling pathway
locations:
- id: GO:0005829
label: cytosol
- id: GO:0005737
label: cytoplasm
proposed_new_terms: []
suggested_questions:
- question: Which GSK3B pathway annotations should be treated as central
kinase/substrate biology versus pleiotropic downstream effects of a broadly
connected kinase?
- question: For Alzheimer disease, should GSK3B curation emphasize tau
phosphorylation and microtubule regulation, Wnt/beta-catenin signaling,
insulin/glycogen metabolism, synaptic signaling, or all as separate
non-equivalent branches?
- question: Which generic high-throughput protein-interaction annotations can be
replaced by reproducible endogenous substrate, scaffold, or
regulator-specific GO terms?
suggested_experiments:
- hypothesis: Alzheimer-relevant GSK3B effects depend on separable
tau-phosphorylation and Wnt/beta-catenin substrate pools rather than global
kinase abundance alone.
description: Use endogenous GSK3B perturbation and phosphosite-specific rescue
in human iPSC-derived neurons and glia, measuring tau
phosphorylation/microtubule binding, beta-catenin degradation,
glycogen/insulin signaling, synaptic phenotypes, and cell viability under
amyloid or inflammatory stress.
experiment_type: substrate-resolved kinase perturbation assay
- hypothesis: Primed-substrate docking determines which GSK3B GO pathway outputs
are direct functions versus secondary pathway consequences.
description: Perform quantitative phosphoproteomics after acute GSK3B
inhibition or analog-sensitive GSK3B mutation, then classify direct
phosphosites by priming dependence and map them to tau, CTNNB1, GYS1,
RICTOR, SNAI1, NFAT, and other candidate substrate pathways.
experiment_type: acute kinase-substrate phosphoproteomics