HAO1 (hydroxyacid oxidase 1; also called glycolate oxidase, GO/GOX, or glyoxylate oxidase; HAOX1) is a peroxisomal FMN-dependent (S)-2-hydroxy-acid oxidase of the FMN-dependent alpha-hydroxy acid dehydrogenase family. It is a homotetramer localized to the peroxisomal matrix and is highly expressed in liver. HAO1 has broad substrate specificity but preferentially oxidizes glycolate to glyoxylate, using molecular O2 as the physiological electron acceptor and generating hydrogen peroxide (H2O2); it also oxidizes long-chain 2-hydroxy fatty acids (e.g. 2-hydroxyhexadecanoate, 2-hydroxyoctanoate) with lower efficiency, contributing to fatty-acid alpha-oxidation. Because it produces glyoxylate, the immediate precursor of oxalate, HAO1 is central to hepatic oxalate production, and in primary hyperoxaluria glyoxylate that is not detoxified to glycine is converted to oxalate, causing kidney stones and systemic oxalosis. HAO1 is therefore a validated therapeutic target, and the siRNA drug lumasiran silences hepatic HAO1 to lower oxalate in primary hyperoxaluria.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0003973
(S)-2-hydroxy-acid oxidase activity
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Core molecular function of HAO1. This IEA (RHEA:16789 / EC:1.1.3.15) captures the FMN-dependent (S)-2-hydroxy-acid oxidase activity that preferentially oxidizes glycolate to glyoxylate, matching the experimentally determined function.
Reason: This is the correct, specific core molecular function and is independently supported by direct experimental IDA annotations (PMID:10777549, PMID:18215067) and by the UniProt catalytic activity records (RHEA:16789, EC 1.1.3.15).
Supporting Evidence:
file:human/HAO1/HAO1-uniprot.txt
Broad substrate specificity (S)-2-hydroxy-acid oxidase that
file:human/HAO1/HAO1-uniprot.txt
preferentially oxidizes glycolate
|
|
GO:0005782
peroxisomal matrix
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: HAO1 is a soluble peroxisomal matrix enzyme with a C-terminal PTS1 microbody targeting signal. This IEA correctly places it in the peroxisomal matrix.
Reason: Consistent with the experimental IDA localization (PMID:10777549) and the UniProt subcellular location; HAO1 carries a C-terminal microbody targeting signal.
Supporting Evidence:
file:human/HAO1/HAO1-uniprot.txt
SUBCELLULAR LOCATION: Peroxisome matrix
|
|
GO:0010181
FMN binding
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: HAO1 is an FMN-dependent flavoenzyme; FMN is the catalytic cofactor. This InterPro-based IEA is correct but represents a supporting cofactor-binding function rather than the core catalytic function.
Reason: FMN is the experimentally confirmed cofactor (PMID:17669354, PMID:18215067); multiple FMN-binding residues are annotated in UniProt. Correct but secondary to the oxidase activity.
Supporting Evidence:
file:human/HAO1/HAO1-uniprot.txt
Name=FMN;
file:human/HAO1/HAO1-uniprot.txt
Belongs to the FMN-dependent alpha-hydroxy acid
|
|
GO:0016491
oxidoreductase activity
|
IEA
GO_REF:0000002 |
MARK AS OVER ANNOTATED |
Summary: Generic parent term for the oxidase activity. Not wrong, but far less informative than the specific (S)-2-hydroxy-acid oxidase activity that is separately annotated.
Reason: GO:0016491 is a high-level ancestor of the specific GO:0003973 activity already annotated with experimental evidence; it adds no information beyond the more specific term.
Supporting Evidence:
file:human/HAO1/HAO1-uniprot.txt
Broad substrate specificity (S)-2-hydroxy-acid oxidase that
|
|
GO:0019395
fatty acid oxidation
|
IEA
GO_REF:0000117 |
MARK AS OVER ANNOTATED |
Summary: ARBA machine-learning inference. HAO1 does oxidize long-chain 2-hydroxy fatty acids, but its role is in fatty-acid alpha-oxidation (the specific IDA annotation GO:0001561), not in general fatty acid oxidation (which connotes beta-oxidation-type degradation).
Reason: The enzyme's fatty-acid-related role is the more specific alpha-oxidation of 2-hydroxy fatty acids (separately annotated as GO:0001561 with IDA). The broad ARBA-derived "fatty acid oxidation" term is imprecise for this activity.
Supporting Evidence:
file:human/HAO1/HAO1-uniprot.txt
long chain hydroxyacids such
PMID:10777549
substrate, glycolate, but is also active on 2-hydroxy fatty acids
|
|
GO:0047639
alcohol oxidase activity
|
IEA
GO_REF:0000116 |
MARK AS OVER ANNOTATED |
Summary: RHEA-based IEA (RHEA:25311, glycolate + O2 = glyoxylate + H2O2). Although glycolate has a hydroxyl group, the informative and correct molecular function term for this reaction is the (S)-2-hydroxy-acid oxidase activity (GO:0003973), not the generic "alcohol oxidase activity".
Reason: The Rhea-to-GO mapping assigns a less-specific, potentially misleading MF term; the glycolate oxidation reaction is properly captured by the (S)-2-hydroxy-acid oxidase activity already annotated with experimental evidence.
Supporting Evidence:
file:human/HAO1/HAO1-uniprot.txt
preferentially oxidizes glycolate
|
|
GO:0047969
glyoxylate oxidase activity
|
IEA
GO_REF:0000120 |
KEEP AS NON CORE |
Summary: Oxidation of glyoxylate to oxalate (EC 1.2.3.5). HAO1 can catalyze this reaction in vitro, but it is a low-efficiency secondary activity that is "most likely not relevant under normal conditions"; the primary reaction is glycolate to glyoxylate.
Reason: A genuine but physiologically minor in vitro activity (kcat/KM far below that for glycolate). Retained but marked non-core because glycolate oxidation, not glyoxylate oxidation, is the primary physiological function.
Supporting Evidence:
PMID:18215067
oxidation of glycolate to glyoxylate is the primary reaction catalyzed by GO, while the oxidation of glyoxylate to oxalate is most likely not relevant under normal conditions
|
|
GO:0005777
peroxisome
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: HAO1 is a peroxisomal enzyme. This IEA (parent of the more specific peroxisomal matrix term) correctly places HAO1 in the peroxisome.
Reason: Correct organelle localization, consistent with the experimental IDA to the peroxisomal matrix (PMID:10777549) and the UniProt subcellular location.
Supporting Evidence:
file:human/HAO1/HAO1-uniprot.txt
SUBCELLULAR LOCATION: Peroxisome matrix
|
|
GO:0006979
response to oxidative stress
|
IEA
GO_REF:0000107 |
MARK AS OVER ANNOTATED |
Summary: Ensembl ortholog-transfer inference. HAO1 is a producer of H2O2 (a reactive oxygen species) rather than a component of the cellular response to oxidative stress; there is no direct evidence that HAO1 participates in defending against oxidative stress.
Reason: The activity generates H2O2 as a by-product; casting HAO1 as part of the "response to oxidative stress" over-interprets an electronic ortholog transfer and does not reflect a validated protective role.
Supporting Evidence:
file:human/HAO1/HAO1-uniprot.txt
leading to the production of H2O2
|
|
GO:0006545
glycine biosynthetic process
|
IEA
GO_REF:0000041 |
KEEP AS NON CORE |
Summary: UniPathway mapping (UPA00288). The glyoxylate produced by HAO1 is transaminated by alanine-glyoxylate aminotransferase to form glycine, so HAO1 provides an upstream substrate for peroxisomal glycine synthesis rather than performing a glycine-synthetic step itself.
Reason: HAO1 contributes the glyoxylate substrate for glycine biosynthesis (a genuine upstream role recorded in the UniProt pathway annotation) but does not itself catalyze glycine formation; retained as a non-core, contributory process.
Supporting Evidence:
file:human/HAO1/HAO1-uniprot.txt
Amino-acid biosynthesis; glycine biosynthesis
|
|
GO:0005782
peroxisomal matrix
|
IDA
PMID:10777549 Identification and characterization of HAOX1, HAOX2, and HAO... |
ACCEPT |
Summary: Direct experimental demonstration that HAO1 (HAOX1) is targeted to peroxisomes; it is a soluble matrix enzyme. This is the primary evidence for the peroxisomal matrix localization.
Reason: Experimental IDA localization of the human enzyme to peroxisomes, consistent with the UniProt subcellular location and the presence of a C-terminal PTS1 signal.
Supporting Evidence:
PMID:10777549
targeted to peroxisomes and have 2-hydroxy acid
|
|
GO:0047969
glyoxylate oxidase activity
|
IDA
PMID:10777549 Identification and characterization of HAOX1, HAOX2, and HAO... |
KEEP AS NON CORE |
Summary: Experimental demonstration that HAOX1 can oxidize glyoxylate to oxalate. This is a genuine but physiologically minor activity relative to the primary glycolate oxidation.
Reason: A real, experimentally supported in vitro activity implicated in oxalate production (and PH1 pathophysiology), but a low-efficiency side reaction rather than the core physiological function. Retained as non-core.
Supporting Evidence:
PMID:10777549
implicate HAOX1 as a mediator of PH1 pathophysiology
|
|
GO:0047969
glyoxylate oxidase activity
|
IDA
PMID:17669354 Purification and characterization of recombinant human liver... |
KEEP AS NON CORE |
Summary: Characterization of recombinant human liver glycolate oxidase confirming it can contribute to oxalate production. As above, glyoxylate-to-oxalate oxidation is a minor secondary activity relative to glycolate oxidation.
Reason: Experimentally supported minor activity; the same physiologically-minor glyoxylate oxidase reaction. Retained as non-core, deferring to the curator's experimental annotation.
Supporting Evidence:
PMID:17669354
to the production of oxalate with formation of kidney stones
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-9033235 |
MARK AS OVER ANNOTATED |
Summary: This Reactome annotation reflects the transient cytosolic pool of HAO1 cargo prior to PTS1-dependent peroxisomal import (the "Cargo of PEX5S,L translocates from the cytosol to the peroxisomal matrix" reaction), not the steady-state functional location.
Reason: HAO1 is synthesized in the cytosol and imported into peroxisomes; the cytosolic annotation captures a transit state of the peroxisomal import pathway rather than a distinct cytosolic function. The functional location is the peroxisomal matrix.
Supporting Evidence:
file:human/HAO1/HAO1-uniprot.txt
SUBCELLULAR LOCATION: Peroxisome matrix
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-9033236 |
MARK AS OVER ANNOTATED |
Summary: As above, this Reactome cytosol annotation derives from the peroxisomal protein import pathway (PEX5:cargo docking), representing an import-transit state rather than a steady-state cytosolic localization.
Reason: Reflects the cytosolic phase of PTS1-mediated peroxisomal import, not an independent cytosolic function; the mature enzyme resides in the peroxisomal matrix.
Supporting Evidence:
file:human/HAO1/HAO1-uniprot.txt
SUBCELLULAR LOCATION: Peroxisome matrix
|
|
GO:0005782
peroxisomal matrix
|
TAS
Reactome:R-HSA-389842 |
ACCEPT |
Summary: Reactome-curated peroxisomal matrix localization ("HAO1 tetramer oxidizes glycolate to glyoxylate"), consistent with the experimental and UniProt evidence.
Reason: Correct steady-state functional location, agreeing with the IDA (PMID:10777549) and UniProt subcellular location.
Supporting Evidence:
file:human/HAO1/HAO1-uniprot.txt
SUBCELLULAR LOCATION: Peroxisome matrix
|
|
GO:0005782
peroxisomal matrix
|
TAS
Reactome:R-HSA-389862 |
ACCEPT |
Summary: Reactome-curated peroxisomal matrix localization associated with the "Conversion of glyoxylate to oxalate" reaction. Correct localization.
Reason: Correct peroxisomal matrix localization, consistent with experimental and UniProt evidence.
Supporting Evidence:
file:human/HAO1/HAO1-uniprot.txt
SUBCELLULAR LOCATION: Peroxisome matrix
|
|
GO:0005782
peroxisomal matrix
|
TAS
Reactome:R-HSA-9033235 |
ACCEPT |
Summary: Reactome peroxisomal matrix localization (peroxisomal import pathway). Consistent with the mature functional location of HAO1.
Reason: Correct peroxisomal matrix localization; the destination of the PTS1-mediated import pathway.
Supporting Evidence:
file:human/HAO1/HAO1-uniprot.txt
SUBCELLULAR LOCATION: Peroxisome matrix
|
|
GO:0003973
(S)-2-hydroxy-acid oxidase activity
|
IDA
PMID:10777549 Identification and characterization of HAOX1, HAOX2, and HAO... |
ACCEPT |
Summary: Direct experimental demonstration that HAOX1 has 2-hydroxy acid oxidase activity and is most active on glycolate. This is the core molecular function of HAO1.
Reason: Primary experimental evidence for the core (S)-2-hydroxy-acid oxidase activity, with glycolate as the preferred substrate.
Supporting Evidence:
PMID:10777549
targeted to peroxisomes and have 2-hydroxy acid
PMID:10777549
substrate, glycolate, but is also active on 2-hydroxy fatty acids
|
|
GO:0001561
fatty acid alpha-oxidation
|
IDA
PMID:18215067 Active site and loop 4 movements within human glycolate oxid... |
KEEP AS NON CORE |
Summary: HAO1 oxidizes long-chain 2-hydroxy fatty acids (e.g. 2-hydroxyoctanoate, 2-hydroxyhexadecanoate), a step within the fatty-acid alpha-oxidation pathway. This is a genuine but secondary role relative to glycolate oxidation.
Reason: Experimentally supported involvement in alpha-oxidation via oxidation of 2-hydroxy fatty acids, but performed with much lower catalytic efficiency than glycolate oxidation; retained as a non-core biological process.
Supporting Evidence:
PMID:10777549
substrate, glycolate, but is also active on 2-hydroxy fatty acids
file:human/HAO1/HAO1-uniprot.txt
long chain hydroxyacids such
|
|
GO:0003973
(S)-2-hydroxy-acid oxidase activity
|
IDA
PMID:18215067 Active site and loop 4 movements within human glycolate oxid... |
ACCEPT |
Summary: Structural and kinetic study confirming the FMN-dependent (S)-2-hydroxy-acid oxidase activity, with glycolate oxidation to glyoxylate as the primary reaction. Core molecular function.
Reason: Direct experimental (structural/kinetic) support for the core (S)-2-hydroxy-acid oxidase activity; the study explicitly identifies glycolate-to-glyoxylate as the primary catalyzed reaction.
Supporting Evidence:
PMID:18215067
catalyzes the FMN-dependent oxidation of glycolate to glyoxylate and glyoxylate to oxalate
PMID:18215067
oxidation of glycolate to glyoxylate is the primary reaction catalyzed by GO, while the oxidation of glyoxylate to oxalate is most likely not relevant under normal conditions
|
|
GO:0010181
FMN binding
|
IDA
PMID:18215067 Active site and loop 4 movements within human glycolate oxid... |
ACCEPT |
Summary: Crystal structures of HAO1 in complex with FMN directly demonstrate FMN binding. FMN is the catalytic cofactor of this flavoenzyme.
Reason: Direct structural evidence (PDB complexes with FMN) for FMN binding; correct cofactor-binding function, secondary to the core oxidase activity.
Supporting Evidence:
PMID:18215067
catalyzes the FMN-dependent oxidation of glycolate to glyoxylate and glyoxylate to oxalate
file:human/HAO1/HAO1-uniprot.txt
Name=FMN;
|
|
GO:0046296
glycolate catabolic process
|
IDA
PMID:18215067 Active site and loop 4 movements within human glycolate oxid... |
ACCEPT |
Summary: HAO1 catalyzes the committed oxidation of glycolate to glyoxylate, the primary catabolic fate of glycolate. This is a core biological process for HAO1.
Reason: Direct experimental support; glycolate oxidation to glyoxylate is identified as the primary reaction catalyzed by the enzyme, making glycolate catabolism a core process.
Supporting Evidence:
PMID:18215067
oxidation of glycolate to glyoxylate is the primary reaction catalyzed by GO, while the oxidation of glyoxylate to oxalate is most likely not relevant under normal conditions
|
Q: Under physiological hepatic conditions, what fraction of glyoxylate that is ultimately converted to oxalate originates from HAO1-generated glyoxylate versus other sources (e.g. hydroxyproline metabolism)?
Q: Does HAO1-generated peroxisomal H2O2 have any regulated signaling or redox role, or is it purely a metabolic by-product handled by peroxisomal catalase?
Experiment: Quantitative flux analysis in primary human hepatocytes with graded HAO1 knockdown (mimicking lumasiran) to measure the contribution of HAO1 to glyoxylate and oxalate pools.
Experiment: Structure-guided kinetic profiling of HAO1 against the full spectrum of L-2-hydroxy acid and 2-hydroxy fatty acid substrates to define its in vivo substrate hierarchy beyond glycolate.
id: Q9UJM8
gene_symbol: HAO1
product_type: PROTEIN
status: INITIALIZED
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: HAO1 (hydroxyacid oxidase 1; also called glycolate oxidase, GO/GOX, or
glyoxylate oxidase; HAOX1) is a peroxisomal FMN-dependent (S)-2-hydroxy-acid oxidase
of the FMN-dependent alpha-hydroxy acid dehydrogenase family. It is a homotetramer
localized to the peroxisomal matrix and is highly expressed in liver. HAO1 has broad
substrate specificity but preferentially oxidizes glycolate to glyoxylate, using
molecular O2 as the physiological electron acceptor and generating hydrogen peroxide
(H2O2); it also oxidizes long-chain 2-hydroxy fatty acids (e.g. 2-hydroxyhexadecanoate,
2-hydroxyoctanoate) with lower efficiency, contributing to fatty-acid alpha-oxidation.
Because it produces glyoxylate, the immediate precursor of oxalate, HAO1 is central
to hepatic oxalate production, and in primary hyperoxaluria glyoxylate that is not
detoxified to glycine is converted to oxalate, causing kidney stones and systemic
oxalosis. HAO1 is therefore a validated therapeutic target, and the siRNA drug lumasiran
silences hepatic HAO1 to lower oxalate in primary hyperoxaluria.
existing_annotations:
- term:
id: GO:0003973
label: (S)-2-hydroxy-acid oxidase activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: enables
review:
summary: Core molecular function of HAO1. This IEA (RHEA:16789 / EC:1.1.3.15)
captures the FMN-dependent (S)-2-hydroxy-acid oxidase activity that preferentially
oxidizes glycolate to glyoxylate, matching the experimentally determined function.
action: ACCEPT
reason: This is the correct, specific core molecular function and is independently
supported by direct experimental IDA annotations (PMID:10777549, PMID:18215067)
and by the UniProt catalytic activity records (RHEA:16789, EC 1.1.3.15).
supported_by:
- reference_id: file:human/HAO1/HAO1-uniprot.txt
supporting_text: Broad substrate specificity (S)-2-hydroxy-acid oxidase that
- reference_id: file:human/HAO1/HAO1-uniprot.txt
supporting_text: preferentially oxidizes glycolate
- term:
id: GO:0005782
label: peroxisomal matrix
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: located_in
review:
summary: HAO1 is a soluble peroxisomal matrix enzyme with a C-terminal PTS1 microbody
targeting signal. This IEA correctly places it in the peroxisomal matrix.
action: ACCEPT
reason: Consistent with the experimental IDA localization (PMID:10777549) and
the UniProt subcellular location; HAO1 carries a C-terminal microbody targeting
signal.
supported_by:
- reference_id: file:human/HAO1/HAO1-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Peroxisome matrix'
- term:
id: GO:0010181
label: FMN binding
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: enables
review:
summary: HAO1 is an FMN-dependent flavoenzyme; FMN is the catalytic cofactor.
This InterPro-based IEA is correct but represents a supporting cofactor-binding
function rather than the core catalytic function.
action: ACCEPT
reason: FMN is the experimentally confirmed cofactor (PMID:17669354, PMID:18215067);
multiple FMN-binding residues are annotated in UniProt. Correct but secondary
to the oxidase activity.
supported_by:
- reference_id: file:human/HAO1/HAO1-uniprot.txt
supporting_text: Name=FMN;
- reference_id: file:human/HAO1/HAO1-uniprot.txt
supporting_text: Belongs to the FMN-dependent alpha-hydroxy acid
- term:
id: GO:0016491
label: oxidoreductase activity
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: enables
review:
summary: Generic parent term for the oxidase activity. Not wrong, but far less
informative than the specific (S)-2-hydroxy-acid oxidase activity that is separately
annotated.
action: MARK_AS_OVER_ANNOTATED
reason: GO:0016491 is a high-level ancestor of the specific GO:0003973 activity
already annotated with experimental evidence; it adds no information beyond the
more specific term.
supported_by:
- reference_id: file:human/HAO1/HAO1-uniprot.txt
supporting_text: Broad substrate specificity (S)-2-hydroxy-acid oxidase that
- term:
id: GO:0019395
label: fatty acid oxidation
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: ARBA machine-learning inference. HAO1 does oxidize long-chain 2-hydroxy
fatty acids, but its role is in fatty-acid alpha-oxidation (the specific IDA
annotation GO:0001561), not in general fatty acid oxidation (which connotes beta-oxidation-type
degradation).
action: MARK_AS_OVER_ANNOTATED
reason: The enzyme's fatty-acid-related role is the more specific alpha-oxidation
of 2-hydroxy fatty acids (separately annotated as GO:0001561 with IDA). The broad
ARBA-derived "fatty acid oxidation" term is imprecise for this activity.
supported_by:
- reference_id: file:human/HAO1/HAO1-uniprot.txt
supporting_text: long chain hydroxyacids such
- reference_id: PMID:10777549
supporting_text: substrate, glycolate, but is also active on 2-hydroxy fatty
acids
- term:
id: GO:0047639
label: alcohol oxidase activity
evidence_type: IEA
original_reference_id: GO_REF:0000116
qualifier: enables
review:
summary: RHEA-based IEA (RHEA:25311, glycolate + O2 = glyoxylate + H2O2). Although
glycolate has a hydroxyl group, the informative and correct molecular function
term for this reaction is the (S)-2-hydroxy-acid oxidase activity (GO:0003973),
not the generic "alcohol oxidase activity".
action: MARK_AS_OVER_ANNOTATED
reason: The Rhea-to-GO mapping assigns a less-specific, potentially misleading
MF term; the glycolate oxidation reaction is properly captured by the (S)-2-hydroxy-acid
oxidase activity already annotated with experimental evidence.
supported_by:
- reference_id: file:human/HAO1/HAO1-uniprot.txt
supporting_text: preferentially oxidizes glycolate
- term:
id: GO:0047969
label: glyoxylate oxidase activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: enables
review:
summary: Oxidation of glyoxylate to oxalate (EC 1.2.3.5). HAO1 can catalyze this
reaction in vitro, but it is a low-efficiency secondary activity that is "most
likely not relevant under normal conditions"; the primary reaction is glycolate
to glyoxylate.
action: KEEP_AS_NON_CORE
reason: A genuine but physiologically minor in vitro activity (kcat/KM far below
that for glycolate). Retained but marked non-core because glycolate oxidation,
not glyoxylate oxidation, is the primary physiological function.
supported_by:
- reference_id: PMID:18215067
supporting_text: oxidation of glycolate to glyoxylate is the primary reaction
catalyzed by GO, while the oxidation of glyoxylate to oxalate is most likely
not relevant under normal conditions
- term:
id: GO:0005777
label: peroxisome
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: located_in
review:
summary: HAO1 is a peroxisomal enzyme. This IEA (parent of the more specific peroxisomal
matrix term) correctly places HAO1 in the peroxisome.
action: ACCEPT
reason: Correct organelle localization, consistent with the experimental IDA to
the peroxisomal matrix (PMID:10777549) and the UniProt subcellular location.
supported_by:
- reference_id: file:human/HAO1/HAO1-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Peroxisome matrix'
- term:
id: GO:0006979
label: response to oxidative stress
evidence_type: IEA
original_reference_id: GO_REF:0000107
qualifier: involved_in
review:
summary: Ensembl ortholog-transfer inference. HAO1 is a producer of H2O2 (a reactive
oxygen species) rather than a component of the cellular response to oxidative
stress; there is no direct evidence that HAO1 participates in defending against
oxidative stress.
action: MARK_AS_OVER_ANNOTATED
reason: The activity generates H2O2 as a by-product; casting HAO1 as part of the
"response to oxidative stress" over-interprets an electronic ortholog transfer
and does not reflect a validated protective role.
supported_by:
- reference_id: file:human/HAO1/HAO1-uniprot.txt
supporting_text: leading to the production of H2O2
- term:
id: GO:0006545
label: glycine biosynthetic process
evidence_type: IEA
original_reference_id: GO_REF:0000041
qualifier: involved_in
review:
summary: UniPathway mapping (UPA00288). The glyoxylate produced by HAO1 is transaminated
by alanine-glyoxylate aminotransferase to form glycine, so HAO1 provides an upstream
substrate for peroxisomal glycine synthesis rather than performing a glycine-synthetic
step itself.
action: KEEP_AS_NON_CORE
reason: HAO1 contributes the glyoxylate substrate for glycine biosynthesis (a genuine
upstream role recorded in the UniProt pathway annotation) but does not itself
catalyze glycine formation; retained as a non-core, contributory process.
supported_by:
- reference_id: file:human/HAO1/HAO1-uniprot.txt
supporting_text: 'Amino-acid biosynthesis; glycine biosynthesis'
- term:
id: GO:0005782
label: peroxisomal matrix
evidence_type: IDA
original_reference_id: PMID:10777549
qualifier: located_in
review:
summary: Direct experimental demonstration that HAO1 (HAOX1) is targeted to peroxisomes;
it is a soluble matrix enzyme. This is the primary evidence for the peroxisomal
matrix localization.
action: ACCEPT
reason: Experimental IDA localization of the human enzyme to peroxisomes, consistent
with the UniProt subcellular location and the presence of a C-terminal PTS1 signal.
supported_by:
- reference_id: PMID:10777549
supporting_text: targeted to peroxisomes and have 2-hydroxy acid
- term:
id: GO:0047969
label: glyoxylate oxidase activity
evidence_type: IDA
original_reference_id: PMID:10777549
qualifier: enables
review:
summary: Experimental demonstration that HAOX1 can oxidize glyoxylate to oxalate.
This is a genuine but physiologically minor activity relative to the primary
glycolate oxidation.
action: KEEP_AS_NON_CORE
reason: A real, experimentally supported in vitro activity implicated in oxalate
production (and PH1 pathophysiology), but a low-efficiency side reaction rather
than the core physiological function. Retained as non-core.
supported_by:
- reference_id: PMID:10777549
supporting_text: implicate HAOX1 as a mediator of PH1 pathophysiology
- term:
id: GO:0047969
label: glyoxylate oxidase activity
evidence_type: IDA
original_reference_id: PMID:17669354
qualifier: enables
review:
summary: Characterization of recombinant human liver glycolate oxidase confirming
it can contribute to oxalate production. As above, glyoxylate-to-oxalate oxidation
is a minor secondary activity relative to glycolate oxidation.
action: KEEP_AS_NON_CORE
reason: Experimentally supported minor activity; the same physiologically-minor
glyoxylate oxidase reaction. Retained as non-core, deferring to the curator's
experimental annotation.
supported_by:
- reference_id: PMID:17669354
supporting_text: to the production of oxalate with formation of kidney stones
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9033235
qualifier: located_in
review:
summary: This Reactome annotation reflects the transient cytosolic pool of HAO1
cargo prior to PTS1-dependent peroxisomal import (the "Cargo of PEX5S,L translocates
from the cytosol to the peroxisomal matrix" reaction), not the steady-state functional
location.
action: MARK_AS_OVER_ANNOTATED
reason: HAO1 is synthesized in the cytosol and imported into peroxisomes; the cytosolic
annotation captures a transit state of the peroxisomal import pathway rather
than a distinct cytosolic function. The functional location is the peroxisomal
matrix.
supported_by:
- reference_id: file:human/HAO1/HAO1-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Peroxisome matrix'
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9033236
qualifier: located_in
review:
summary: As above, this Reactome cytosol annotation derives from the peroxisomal
protein import pathway (PEX5:cargo docking), representing an import-transit state
rather than a steady-state cytosolic localization.
action: MARK_AS_OVER_ANNOTATED
reason: Reflects the cytosolic phase of PTS1-mediated peroxisomal import, not an
independent cytosolic function; the mature enzyme resides in the peroxisomal
matrix.
supported_by:
- reference_id: file:human/HAO1/HAO1-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Peroxisome matrix'
- term:
id: GO:0005782
label: peroxisomal matrix
evidence_type: TAS
original_reference_id: Reactome:R-HSA-389842
qualifier: located_in
review:
summary: Reactome-curated peroxisomal matrix localization ("HAO1 tetramer oxidizes
glycolate to glyoxylate"), consistent with the experimental and UniProt evidence.
action: ACCEPT
reason: Correct steady-state functional location, agreeing with the IDA (PMID:10777549)
and UniProt subcellular location.
supported_by:
- reference_id: file:human/HAO1/HAO1-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Peroxisome matrix'
- term:
id: GO:0005782
label: peroxisomal matrix
evidence_type: TAS
original_reference_id: Reactome:R-HSA-389862
qualifier: located_in
review:
summary: Reactome-curated peroxisomal matrix localization associated with the "Conversion
of glyoxylate to oxalate" reaction. Correct localization.
action: ACCEPT
reason: Correct peroxisomal matrix localization, consistent with experimental and
UniProt evidence.
supported_by:
- reference_id: file:human/HAO1/HAO1-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Peroxisome matrix'
- term:
id: GO:0005782
label: peroxisomal matrix
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9033235
qualifier: located_in
review:
summary: Reactome peroxisomal matrix localization (peroxisomal import pathway).
Consistent with the mature functional location of HAO1.
action: ACCEPT
reason: Correct peroxisomal matrix localization; the destination of the PTS1-mediated
import pathway.
supported_by:
- reference_id: file:human/HAO1/HAO1-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Peroxisome matrix'
- term:
id: GO:0003973
label: (S)-2-hydroxy-acid oxidase activity
evidence_type: IDA
original_reference_id: PMID:10777549
qualifier: enables
review:
summary: Direct experimental demonstration that HAOX1 has 2-hydroxy acid oxidase
activity and is most active on glycolate. This is the core molecular function
of HAO1.
action: ACCEPT
reason: Primary experimental evidence for the core (S)-2-hydroxy-acid oxidase activity,
with glycolate as the preferred substrate.
supported_by:
- reference_id: PMID:10777549
supporting_text: targeted to peroxisomes and have 2-hydroxy acid
- reference_id: PMID:10777549
supporting_text: substrate, glycolate, but is also active on 2-hydroxy fatty
acids
- term:
id: GO:0001561
label: fatty acid alpha-oxidation
evidence_type: IDA
original_reference_id: PMID:18215067
qualifier: involved_in
review:
summary: HAO1 oxidizes long-chain 2-hydroxy fatty acids (e.g. 2-hydroxyoctanoate,
2-hydroxyhexadecanoate), a step within the fatty-acid alpha-oxidation pathway.
This is a genuine but secondary role relative to glycolate oxidation.
action: KEEP_AS_NON_CORE
reason: Experimentally supported involvement in alpha-oxidation via oxidation of
2-hydroxy fatty acids, but performed with much lower catalytic efficiency than
glycolate oxidation; retained as a non-core biological process.
supported_by:
- reference_id: PMID:10777549
supporting_text: substrate, glycolate, but is also active on 2-hydroxy fatty
acids
- reference_id: file:human/HAO1/HAO1-uniprot.txt
supporting_text: long chain hydroxyacids such
- term:
id: GO:0003973
label: (S)-2-hydroxy-acid oxidase activity
evidence_type: IDA
original_reference_id: PMID:18215067
qualifier: enables
review:
summary: Structural and kinetic study confirming the FMN-dependent (S)-2-hydroxy-acid
oxidase activity, with glycolate oxidation to glyoxylate as the primary reaction.
Core molecular function.
action: ACCEPT
reason: Direct experimental (structural/kinetic) support for the core (S)-2-hydroxy-acid
oxidase activity; the study explicitly identifies glycolate-to-glyoxylate as
the primary catalyzed reaction.
supported_by:
- reference_id: PMID:18215067
supporting_text: catalyzes the FMN-dependent oxidation of glycolate to glyoxylate
and glyoxylate to oxalate
- reference_id: PMID:18215067
supporting_text: oxidation of glycolate to glyoxylate is the primary reaction
catalyzed by GO, while the oxidation of glyoxylate to oxalate is most likely
not relevant under normal conditions
- term:
id: GO:0010181
label: FMN binding
evidence_type: IDA
original_reference_id: PMID:18215067
qualifier: enables
review:
summary: Crystal structures of HAO1 in complex with FMN directly demonstrate FMN
binding. FMN is the catalytic cofactor of this flavoenzyme.
action: ACCEPT
reason: Direct structural evidence (PDB complexes with FMN) for FMN binding; correct
cofactor-binding function, secondary to the core oxidase activity.
supported_by:
- reference_id: PMID:18215067
supporting_text: catalyzes the FMN-dependent oxidation of glycolate to glyoxylate
and glyoxylate to oxalate
- reference_id: file:human/HAO1/HAO1-uniprot.txt
supporting_text: Name=FMN;
- term:
id: GO:0046296
label: glycolate catabolic process
evidence_type: IDA
original_reference_id: PMID:18215067
qualifier: involved_in
review:
summary: HAO1 catalyzes the committed oxidation of glycolate to glyoxylate, the
primary catabolic fate of glycolate. This is a core biological process for HAO1.
action: ACCEPT
reason: Direct experimental support; glycolate oxidation to glyoxylate is identified
as the primary reaction catalyzed by the enzyme, making glycolate catabolism
a core process.
supported_by:
- reference_id: PMID:18215067
supporting_text: oxidation of glycolate to glyoxylate is the primary reaction
catalyzed by GO, while the oxidation of glyoxylate to oxalate is most likely
not relevant under normal conditions
core_functions:
- description: FMN-dependent oxidation of glycolate to glyoxylate (and other L-2-hydroxy
acids) using O2, producing H2O2, in the peroxisomal matrix of hepatocytes
molecular_function:
id: GO:0003973
label: (S)-2-hydroxy-acid oxidase activity
directly_involved_in:
- id: GO:0046296
label: glycolate catabolic process
locations:
- id: GO:0005782
label: peroxisomal matrix
supported_by:
- reference_id: PMID:18215067
supporting_text: oxidation of glycolate to glyoxylate is the primary reaction catalyzed
by GO, while the oxidation of glyoxylate to oxalate is most likely not relevant
under normal conditions
- reference_id: PMID:10777549
supporting_text: substrate, glycolate, but is also active on 2-hydroxy fatty acids
- reference_id: file:human/HAO1/HAO1-uniprot.txt
supporting_text: Broad substrate specificity (S)-2-hydroxy-acid oxidase that
- description: Binds the FMN cofactor required for its flavoenzyme oxidase activity
molecular_function:
id: GO:0010181
label: FMN binding
locations:
- id: GO:0005782
label: peroxisomal matrix
supported_by:
- reference_id: PMID:18215067
supporting_text: catalyzes the FMN-dependent oxidation of glycolate to glyoxylate
and glyoxylate to oxalate
- reference_id: file:human/HAO1/HAO1-uniprot.txt
supporting_text: Belongs to the FMN-dependent alpha-hydroxy acid
proposed_new_terms: []
suggested_questions:
- question: Under physiological hepatic conditions, what fraction of glyoxylate that
is ultimately converted to oxalate originates from HAO1-generated glyoxylate versus
other sources (e.g. hydroxyproline metabolism)?
- question: Does HAO1-generated peroxisomal H2O2 have any regulated signaling or redox
role, or is it purely a metabolic by-product handled by peroxisomal catalase?
suggested_experiments:
- description: Quantitative flux analysis in primary human hepatocytes with graded
HAO1 knockdown (mimicking lumasiran) to measure the contribution of HAO1 to glyoxylate
and oxalate pools.
- description: Structure-guided kinetic profiling of HAO1 against the full spectrum
of L-2-hydroxy acid and 2-hydroxy fatty acid substrates to define its in vivo substrate
hierarchy beyond glycolate.
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO
terms
findings: []
- id: GO_REF:0000041
title: Gene Ontology annotation based on UniPathway vocabulary mapping
findings: []
- id: GO_REF:0000107
title: Automatic transfer of experimentally verified manual GO annotation data to
orthologs using Ensembl Compara
findings: []
- id: GO_REF:0000116
title: Automatic Gene Ontology annotation based on Rhea mapping
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning models
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:10777549
title: Identification and characterization of HAOX1, HAOX2, and HAOX3, three human
peroxisomal 2-hydroxy acid oxidases.
findings:
- statement: HAOX1 (HAO1) is a peroxisomal 2-hydroxy acid oxidase most active on
glycolate, also active on 2-hydroxy fatty acids, and able to oxidize glyoxylate
to oxalate, implicating it in primary hyperoxaluria type 1 pathophysiology.
Expressed primarily in liver and pancreas.
supporting_text: substrate, glycolate, but is also active on 2-hydroxy fatty acids
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: PubMed-verified; primary identification/characterization of human
HAO1 (HAOX1) establishing peroxisomal localization, glycolate preference, and
the PH1 connection. Abstract-only cache.
- id: PMID:17669354
title: Purification and characterization of recombinant human liver glycolate oxidase.
findings:
- statement: Recombinant human liver glycolate oxidase is an FMN-dependent peroxisomal
oxidase belonging to the L-2-hydroxy-acid-oxidizing flavoenzyme family; it contributes
to oxalate production and is inhibited by its product oxalate.
supporting_text: an FMN-dependent peroxisomal oxidase
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: PubMed-verified; biochemical characterization of recombinant human
HAO1, confirming FMN dependence, homotetramer, and substrate specificity. Abstract-only
cache.
- id: PMID:18215067
title: 'Active site and loop 4 movements within human glycolate oxidase: implications
for substrate specificity and drug design.'
findings:
- statement: Crystal structures and kinetics of human glycolate oxidase (HAO1) show
that oxidation of glycolate to glyoxylate is the primary reaction, that glyoxylate-to-oxalate
oxidation is likely not physiologically relevant, and that the enzyme is a drug
target for primary hyperoxaluria type 1.
supporting_text: oxidation of glycolate to glyoxylate is the primary reaction catalyzed
by GO, while the oxidation of glyoxylate to oxalate is most likely not relevant
under normal conditions
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: PubMed-verified; structural/kinetic study establishing glycolate
oxidation as the primary reaction and framing HAO1 as a hyperoxaluria drug target.
- id: Reactome:R-HSA-389842
title: HAO1 tetramer oxidizes glycolate to glyoxylate
findings: []
- id: Reactome:R-HSA-389862
title: Conversion of glyoxylate to oxalate
findings: []
- id: Reactome:R-HSA-9033235
title: Cargo of PEX5S,L translocates from the cytosol to the peroxisomal matrix
findings: []
- id: Reactome:R-HSA-9033236
title: PEX5S,L:Cargo binds PEX13:PEX14:PEX2:PEX10:PEX12 (Docking and Translocation
Module)
findings: []
- id: file:human/HAO1/HAO1-uniprot.txt
title: UniProtKB Q9UJM8 (HAOX1_HUMAN) 2-Hydroxyacid oxidase 1
findings:
- statement: HAO1 is a broad-specificity (S)-2-hydroxy-acid oxidase that preferentially
oxidizes glycolate, uses O2 to produce H2O2, is an FMN-dependent homotetramer
in the peroxisome matrix, is highly expressed in liver, and feeds glyoxylate
into peroxisomal glycine biosynthesis.
supporting_text: preferentially oxidizes glycolate
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: UniProt reviewed entry; source for catalytic activities (RHEA/EC),
FMN cofactor, homotetramer, peroxisomal matrix location, liver expression, and
the glycine-biosynthesis/oxalate context.