HRAS encodes H-Ras, a membrane-associated small GTPase that acts as a GDP/GTP-regulated molecular switch in Ras signal transduction. Its core function is GTP binding and hydrolysis with nucleotide-state-dependent recruitment of effectors, especially pathways leading to RAF-MEK-ERK signaling; membrane targeting through CAAX processing and palmitoylation localizes H-Ras to plasma membrane and Golgi/endomembrane compartments. Many proliferation, senescence, transcription, migration, and developmental annotations are context-dependent downstream outcomes, often derived from oncogenic mutant or overexpression studies, and should not be treated as the core molecular function of wild-type HRAS.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0005886
plasma membrane
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: HRAS is membrane-targeted and signals from the plasma membrane.
Reason: Plasma membrane localization is central to HRAS signaling, supported by CAAX processing and palmitoylation-dependent trafficking.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS contains a C-terminal **CAAX motif** that is post-translationally processed by a canonical sequence: **farnesylation → AAX proteolysis (RCE1) → carboxymethylation (ICMT)**.
|
|
GO:0007265
Ras protein signal transduction
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: HRAS is a canonical Ras-family GTPase that mediates Ras protein signal transduction.
Reason: Ras protein signal transduction is the core biological process for HRAS as a GDP/GTP-regulated molecular switch.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
RAS proteins (including HRAS) are **GTP hydrolases** that function as **binary molecular switches**: GDP-bound is “OFF,” GTP-bound is “ON,” and the ON state supports binding to downstream effector proteins.
|
|
GO:0008284
positive regulation of cell population proliferation
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: HRAS signaling can promote proliferation, but this is a downstream and context-dependent outcome rather than the core HRAS molecular function.
Reason: Proliferation is a canonical outcome of Ras signaling in some cellular contexts, but it depends on cell type, stimulus duration, feedback, and mutant versus wild-type HRAS state.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
RAS-ERK signaling dynamics can bias proliferation versus differentiation outputs, but these outcomes depend strongly on cell type and signaling kinetics.
|
|
GO:0003924
GTPase activity
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: HRAS has intrinsic GTPase activity.
Reason: GTP hydrolysis is the core molecular switch activity of HRAS.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Intrinsic GTPase activity is **accelerated by GAPs**, while **GEFs promote GDP→GTP exchange**.
|
|
GO:0090398
cellular senescence
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Cellular senescence is a context-dependent outcome of oncogenic Ras signaling rather than the primary normal function of HRAS.
Reason: Senescence evidence is strongly tied to oncogenic Ras expression and should not be treated as the core function of wild-type HRAS.
Supporting Evidence:
PMID:9054499
Here we show that expression of oncogenic ras in primary human or rodent cells results in a permanent G1 arrest.
file:human/HRAS/HRAS-deep-research-falcon.md
Apoptosis/senescence: generally non-core default for HRAS
|
|
GO:0000139
Golgi membrane
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: Golgi membrane localization is part of HRAS lipidation-dependent membrane trafficking.
Reason: HRAS is processed and trafficked through ER/Golgi membranes before plasma membrane localization.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Palmitoylation provides the “second signal” for HRAS membrane targeting beyond prenylation and supports vesicular transport from **Golgi→plasma membrane**; palmitoylation is **reversible/dynamic**, supporting HRAS cycling between Golgi and plasma membrane.
|
|
GO:0000165
MAPK cascade
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: HRAS activates signaling through the RAF-MEK-ERK MAPK cascade.
Reason: MAPK cascade signaling is a proximal canonical Ras output, although distal phenotypic outcomes should be curated separately.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
RAS proteins sit at the apex of the **RAF–MEK–ERK (MAPK) cascade**, and Ras-effector binding directly routes signals into MAPK outputs.
|
|
GO:0003924
GTPase activity
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: HRAS has intrinsic GTPase activity.
Reason: GTPase activity is the core catalytic molecular function of HRAS.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Intrinsic GTPase activity is **accelerated by GAPs**, while **GEFs promote GDP→GTP exchange**.
|
|
GO:0003925
G protein activity
|
IEA
GO_REF:0000003 |
MODIFY |
Summary: HRAS is a small monomeric GTPase rather than a heterotrimeric G protein; the more precise annotation is GTPase activity.
Reason: GO:0003925 can cover Ras-family GTPases, but the annotation should use GO:0003924 because it captures the catalytic GTP-hydrolysis function more precisely.
Proposed replacements:
GTPase activity
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS is a canonical RAS small GTPase that binds GDP/GTP with high affinity and functions as a nucleotide-dependent molecular switch.
|
|
GO:0005525
GTP binding
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: HRAS binds guanine nucleotides as part of its GDP/GTP switch mechanism.
Reason: GTP binding is a core molecular function for Ras-family GTPases.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS is a canonical RAS small GTPase that binds GDP/GTP with high affinity and functions as a nucleotide-dependent molecular switch.
|
|
GO:0005634
nucleus
|
IEA
GO_REF:0000044 |
MARK AS OVER ANNOTATED |
Summary: Nuclear localization is not characteristic of the canonical farnesylated, membrane-anchored H-Ras p21 isoform.
Reason: The mature p21 H-Ras is targeted to the plasma membrane and Golgi/endomembranes via CAAX prenylation and palmitoylation; nuclear localization is reported mainly for the minor alternatively spliced p19 (H-RasIDX) isoform, so a general nuclear CC annotation over-projects onto the main gene product.
Supporting Evidence:
PMID:14500341
Both the endogenous and the transiently expressed p19 protein are detected in COS-1 and HeLa cells and show nuclear diffuse and speckled patterns as well as cytoplasmic localization.
|
|
GO:0005737
cytoplasm
|
IEA
GO_REF:0000044 |
KEEP AS NON CORE |
Summary: A broad cytoplasm annotation is consistent with HRAS biology but less informative than its specific membrane locations.
Reason: Newly synthesized and a fraction of HRAS exists in the cytoplasm prior to membrane targeting, and the p19 isoform shows cytoplasmic localization; however, the functionally meaningful locations are plasma membrane and Golgi/endomembrane, so the generic cytoplasm term is retained as non-core.
Supporting Evidence:
PMID:14500341
Both the endogenous and the transiently expressed p19 protein are detected in COS-1 and HeLa cells and show nuclear diffuse and speckled patterns as well as cytoplasmic localization.
|
|
GO:0005794
Golgi apparatus
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: Golgi localization is supported by HRAS membrane trafficking and palmitoylation cycles.
Reason: HRAS cycles through Golgi membranes as part of its lipidation-dependent targeting to signaling membranes.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Palmitoylation provides the “second signal” for HRAS membrane targeting beyond prenylation and supports vesicular transport from **Golgi→plasma membrane**; palmitoylation is **reversible/dynamic**, supporting HRAS cycling between Golgi and plasma membrane.
|
|
GO:0005886
plasma membrane
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: HRAS localizes to the plasma membrane for Ras signaling.
Reason: Plasma membrane localization is a core cellular context for HRAS signal-transduction function.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Plasma membrane localization | HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0007165
signal transduction
|
IEA
GO_REF:0000002 |
MODIFY |
Summary: The annotation captures the broad signaling role of HRAS, but Ras protein signal transduction is more informative.
Reason: HRAS is specifically a Ras-family signal-transduction GTPase, so the existing broad signal transduction term should be replaced with the specific Ras protein signal transduction term.
Proposed replacements:
Ras protein signal transduction
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Ras protein signal transduction | HRAS is one of the canonical RAS proteins acting upstream of multiple effector pathways in Ras signal transduction.
|
|
GO:0016020
membrane
|
IEA
GO_REF:0000002 |
MODIFY |
Summary: HRAS is membrane-associated, but the generic membrane term is less informative than its specific plasma membrane and Golgi membrane annotations.
Reason: HRAS lipidation targets it to specific membranes; the broad membrane term should be replaced with the more precise plasma membrane location that is central to its signaling.
Proposed replacements:
plasma membrane
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0048471
perinuclear region of cytoplasm
|
IEA
GO_REF:0000044 |
KEEP AS NON CORE |
Summary: Perinuclear localization is consistent with HRAS pools at the Golgi and perinuclear endomembranes during lipidation-dependent trafficking.
Reason: HRAS cycles through Golgi/recycling endosomes, which lie in the perinuclear region, so this localization is plausible but secondary to the plasma membrane and Golgi membrane annotations.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
palmitoylation is **reversible/dynamic**, supporting HRAS cycling between Golgi and plasma membrane
|
|
GO:0005515
protein binding
|
IPI
PMID:11335720 Prenylated Rab acceptor protein is a receptor for prenylated... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with PRA1/prenylated Rab acceptor (a receptor for prenylated small GTPases).
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:11857081 The putative tumor suppressor RASSF1A homodimerizes and hete... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with RASSF1A/NORE1 Ras-GTP binding proteins.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:12620389 Novel raf kinase protein-protein interactions found by an ex... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with RAF kinase (two-hybrid interactions).
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:12628188 Structural evidence for feedback activation by Ras.GTP of th... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with the Ras-GEF SOS (feedback Ras-GTP activation site).
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:14724641 Ras regulates assembly of mitogenic signalling complexes thr... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with the effector IMP in mitogenic signalling complexes.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:15507210 Structural analysis of autoinhibition in the Ras activator S... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with the Ras activator SOS (autoinhibition).
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:15886098 RIN1 is an ABL tyrosine kinase activator and a regulator of ... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with the ABL activator/effector RIN1.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:16316996 The RAP1 guanine nucleotide exchange factor Epac2 couples cy... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with the RAP1 GEF Epac2.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:16698549 GTP-Ras disrupts the intramolecular complex of C1 and RA dom... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with NORE1/RASSF5 (C1 and RA domains).
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:16810318 Release of RASSF1C from the nucleus by Daxx degradation link... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with RASSF1C (DNA-damage/JNK context).
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:17084389 Catalytic competence of the Ras-GEF domain of hSos1 requires... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with the Ras-GEF hSos1 (REM domain).
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:17540175 Binding of ras to phosphoinositide 3-kinase p110alpha is req... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with PI3K p110alpha (Ras-driven tumorigenesis).
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:18073111 Transformation efficiency of RasQ61 mutants linked to struct... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with RAF in the context of RasQ61 mutant transformation.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:18273062 A novel switch region regulates H-ras membrane orientation a... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with a switch-region partner regulating H-Ras membrane orientation.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:18454158 Membrane-dependent signal integration by the Ras activator S... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with the Ras activator SOS (membrane signal integration).
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:18596699 Novel type of Ras effector interaction established between t... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with the tumour-suppressor effector NORE1A via Ras switch II.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:19063885 Regulation of growth and survival of activated T cells by ce... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with cell-transducing Ras inhibitors.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:19141281 Differences in flexibility underlie functional differences i... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with the Ras activators SOS and RasGRF1.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:19222999 Reassessment of the role of FKBP38 in the Rheb/mTORC1 pathwa... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with FKBP38 (Rheb/mTORC1 pathway reassessment).
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:19696784 Nucleocytoplasmic transport of Alp7/TACC organizes spatiotem... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with a partner identified in a fission-yeast TACC study.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:20080631 Ras membrane orientation and nanodomain localization generat... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with partners affecting Ras membrane orientation/nanodomain localization.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:20133692 Role of the histone domain in the autoinhibition and activat... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with the Ras activator SOS (histone domain autoinhibition).
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:20133694 Allosteric gating of Son of sevenless activity by the histon... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with the Ras activator SOS (allosteric gating by histone domain).
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:20178605 Genetic and functional characterization of putative Ras/Raf ... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with putative Ras/Raf interaction inhibitors.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:20936779 A human MAP kinase interactome. |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with MAP kinase interactome partners.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:22020336 p37δ is a new isoform of PI3K p110δ that increases cell prol... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with PI3K p110delta isoform p37delta.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:22169110 Nilotinib and MEK inhibitors induce synthetic lethality thro... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with RAF in drug-resistant CML (paradoxical activation).
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:24412244 Charting the molecular links between driver and susceptibili... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with driver/susceptibility partners in colorectal cancer.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:24441586 Integrated RAS signaling defined by parallel NMR detection o... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with effectors and regulators detected by parallel NMR.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:24929361 Protein interaction switches coordinate Raf-1 and MST2/Hippo... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with Raf-1 and MST2/Hippo signalling partners.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:25241761 Using an in situ proximity ligation assay to systematically ... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with endogenous pathway partners profiled by proximity ligation.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:25684575 Allosteric effects of the oncogenic RasQ61L mutant on Raf-RB... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with Raf-RBD (oncogenic RasQ61L allosteric effects).
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:26165597 The RAS-Binding Domain of Human BRAF Protein Serine/Threonin... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with the BRAF Ras-binding domain.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:26635368 Interaction between a Domain of the Negative Regulator of th... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with neurofibromin GAP-related domain/SPRED1 (Legius/NF1 context).
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:28514442 Architecture of the human interactome defines protein commun... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with protein-community partners from a large interactome map.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:30194290 Interrogating the protein interactomes of RAS isoforms ident... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with RAS-isoform interactome partners (PIP5K1A study).
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:30518913 UBIAD1 suppresses the proliferation of bladder carcinoma cel... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with UBIAD1 (H-Ras C-terminal trafficking).
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:31209342 GGTase3 is a newly identified geranylgeranyltransferase targ... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with a substrate context in a geranylgeranyltransferase study.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:32814053 Interactome Mapping Provides a Network of Neurodegenerative ... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with neurodegenerative-disease network partners.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:33961781 Dual proteome-scale networks reveal cell-specific remodeling... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with cell-specific interactome partners.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:34591612 A protein interaction landscape of breast cancer. |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with breast-cancer interactome partners.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:34591642 A protein network map of head and neck cancer reveals PIK3CA... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with head and neck cancer interactome partners.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:35512704 Systematic discovery of mutation-directed neo-protein-protei... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with mutation-directed neo-interaction partners in cancer.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:35839996 A Proteomic Approach Identifies Isoform-Specific and Nucleot... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with isoform-specific, nucleotide-dependent RAS interactors.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:40205054 Multimodal cell maps as a foundation for structural and func... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with partners from multimodal cell maps.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:8332187 Normal and oncogenic p21ras proteins bind to the amino-termi... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with the c-Raf-1 amino-terminal regulatory domain.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:8670882 Identification of a novel Rac1-interacting protein involved ... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with a Rac1-interacting membrane-ruffling protein.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:9144171 Protein binding and signaling properties of RIN1 suggest a u... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with the effector RIN1.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:9447984 Regulation of Sos activity by intramolecular interactions. |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with the Ras activator SOS (intramolecular regulation).
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:9488663 Identification of Nore1 as a potential Ras effector. |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with the potential Ras effector Nore1.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:9690470 The structural basis of the activation of Ras by Sos. |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with the Ras GEF SOS (activation mechanism).
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
P01112-2 PMID:32296183 A reference map of the human binary protein interactome. |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with binary interactome partners (isoform P01112-2).
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0007265
Ras protein signal transduction
|
IEA
GO_REF:0000107 |
ACCEPT |
Summary: HRAS is directly involved in Ras protein signal transduction.
Reason: This is the core biological process for the HRAS GTPase switch.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
“Ras protein signal transduction” and “positive regulation of MAPK cascade” are generally **core** for HRAS, but very specific outcome terms (e.g., “cell cycle progression” as a default) should be restricted to contexts with strong, direct, wild-type evidence.
|
|
GO:0008286
insulin receptor signaling pathway
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: HRAS acts downstream of receptor tyrosine kinases including the insulin receptor, but this is one specific RTK input among many rather than a core HRAS-defining process.
Reason: RAS GTPases relay signals from multiple growth-factor/RTK inputs (EGFR, insulin receptor, etc.) into the MAPK and PI3K pathways; the insulin receptor pathway is a legitimate but non-core context for HRAS, while the core annotation is the general Ras protein signal transduction.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
RAS proteins sit at the apex of the **RAF–MEK–ERK (MAPK) cascade**, and Ras-effector binding directly routes signals into MAPK outputs.
|
|
GO:0014044
Schwann cell development
|
IEA
GO_REF:0000107 |
MARK AS OVER ANNOTATED |
Summary: Schwann cell development is a distal developmental outcome and is not a core HRAS molecular function annotation.
Reason: This automated IEA row appears to over-project broad Ras-family or pathway-derived developmental biology onto HRAS; there is no direct evidence in this review that wild-type HRAS is a proximal regulator of Schwann cell development specifically.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
2) **Avoid overly broad BP terms** (e.g., generic “cancer,” “development,” “cell cycle,” “transcriptional regulation,” “immune/inflammatory processes”) unless there is direct mechanistic evidence placing *wild-type HRAS* as a proximal regulator rather than a downstream correlate. Large interactome datasets include false positives and many context-specific interactors.
|
|
GO:0042552
myelination
|
IEA
GO_REF:0000107 |
MARK AS OVER ANNOTATED |
Summary: Myelination is a distal developmental outcome and is not supported as a core HRAS annotation.
Reason: This automated IEA row appears to over-project broad Ras-family or pathway-derived developmental biology onto HRAS; HRAS mutations can cause developmental phenotypes, but that does not make myelination a proximal wild-type HRAS function for GO annotation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Do not transfer oncogenic mutant phenotypes to wild-type HRAS GO BP terms by default.
|
|
GO:0043495
protein-membrane adaptor activity
|
IEA
GO_REF:0000107 |
REMOVE |
Summary: HRAS is a lipid-modified small GTPase, not a protein-membrane adaptor.
Reason: HRAS membrane association is mediated by its own CAAX processing and palmitoylation; that trafficking mechanism should not be represented as protein-membrane adaptor activity.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Membrane targeting by CAAX prenylation and palmitoylation | HRAS uses CAAX farnesylation, AAX cleavage, carboxymethylation, and reversible palmitoylation as the core membrane-targeting logic.
|
|
GO:0060612
adipose tissue development
|
IEA
GO_REF:0000107 |
MARK AS OVER ANNOTATED |
Summary: Adipose tissue development is too distal to represent the core function of HRAS.
Reason: This automated IEA row appears to over-project broad Ras-family or pathway-derived developmental biology onto HRAS; direct evidence that wild-type HRAS is a proximal regulator of adipose tissue development was not identified in this review.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
2) **Avoid overly broad BP terms** (e.g., generic “cancer,” “development,” “cell cycle,” “transcriptional regulation,” “immune/inflammatory processes”) unless there is direct mechanistic evidence placing *wild-type HRAS* as a proximal regulator rather than a downstream correlate. Large interactome datasets include false positives and many context-specific interactors.
|
|
GO:0046579
positive regulation of Ras protein signal transduction
|
NAS
PMID:35831509 Structure-function analysis of the SHOC2-MRAS-PP1C holophosp... |
KEEP AS NON CORE |
Summary: HRAS participates in positive feedback loops within RAS-ERK signaling (e.g., via SHOC2-MRAS-PP1C-mediated RAF dephosphorylation), but the cited study focuses on the MRAS-containing holophosphatase rather than HRAS directly.
Reason: Positive regulation of Ras signal transduction is biologically reasonable for HRAS (Ras-GTP can feedback-activate SOS), but the supporting reference (PMID:35831509) characterizes the SHOC2-MRAS-PP1C complex; the annotation is plausible at the pathway level but not a direct, core HRAS molecular function. The core process is captured by GO:0007265.
Supporting Evidence:
PMID:35831509
Structure-function analysis of the SHOC2-MRAS-PP1C holophosphatase complex.
file:human/HRAS/HRAS-deep-research-falcon.md
A key GO-relevant principle is that **bona fide Ras effectors must bind RAS in a nucleotide-dependent manner (GTP-bound)**
|
|
GO:0006357
regulation of transcription by RNA polymerase II
|
IDA
PMID:23027131 Wnt4 inhibits cell motility induced by oncogenic Ras. |
MARK AS OVER ANNOTATED |
Summary: This transcription annotation is based on a downstream oncogenic Ras model and should not be treated as a direct HRAS function.
Reason: PMID:23027131 describes oncogenic Ras regulation of Wnt4/miR-24 and motility phenotypes, which are distal transcriptional consequences rather than a direct normal molecular function of HRAS.
Supporting Evidence:
PMID:23027131
By using a model of malignant transformation induced by Ras, we identified Wnt4 as an early target of Ras oncogenic signaling.
file:human/HRAS/HRAS-deep-research-falcon.md
2) **Avoid overly broad BP terms** (e.g., generic “cancer,” “development,” “cell cycle,” “transcriptional regulation,” “immune/inflammatory processes”) unless there is direct mechanistic evidence placing *wild-type HRAS* as a proximal regulator rather than a downstream correlate. Large interactome datasets include false positives and many context-specific interactors.
|
|
GO:0007265
Ras protein signal transduction
|
IDA
PMID:23027131 Wnt4 inhibits cell motility induced by oncogenic Ras. |
ACCEPT |
Summary: The paper uses oncogenic Ras, but the annotation to Ras protein signal transduction is consistent with HRAS biology.
Reason: HRAS's proximal role in Ras protein signal transduction is core, even though distal phenotypes from this particular study require caution.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Ras protein signal transduction | HRAS is one of the canonical RAS proteins acting upstream of multiple effector pathways in Ras signal transduction.
|
|
GO:0042127
regulation of cell population proliferation
|
IDA
PMID:9054499 Oncogenic ras provokes premature cell senescence associated ... |
KEEP AS NON CORE |
Summary: Oncogenic Ras regulates proliferation/senescence outcomes, but this is not a core wild-type HRAS function.
Reason: The supporting paper uses oncogenic Ras and shows growth arrest/senescence in primary cells, making this a context-dependent downstream outcome.
Supporting Evidence:
PMID:9054499
Here we show that expression of oncogenic ras in primary human or rodent cells results in a permanent G1 arrest.
|
|
GO:0000165
MAPK cascade
|
TAS
Reactome:R-HSA-5673001 |
ACCEPT |
Summary: HRAS signals through the RAF-MEK-ERK MAPK cascade.
Reason: MAPK signaling is a proximal canonical output of HRAS-GTP effector binding.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
RAS proteins sit at the apex of the **RAF–MEK–ERK (MAPK) cascade**, and Ras-effector binding directly routes signals into MAPK outputs.
|
|
GO:0005654
nucleoplasm
|
IDA
GO_REF:0000052 |
MARK AS OVER ANNOTATED |
Summary: Nucleoplasmic localization is not characteristic of the membrane-anchored p21 H-Ras and likely derives from high-throughput localization data or the minor p19 isoform.
Reason: The mature, lipidated H-Ras is targeted to plasma membrane and Golgi/endomembranes; nucleoplasmic localization is reported mainly for the alternatively spliced p19 (H-RasIDX), so a nucleoplasm CC term over-projects onto the canonical gene product.
Supporting Evidence:
PMID:14500341
Both the endogenous and the transiently expressed p19 protein are detected in COS-1 and HeLa cells and show nuclear diffuse and speckled patterns as well as cytoplasmic localization.
|
|
GO:0005829
cytosol
|
IDA
GO_REF:0000052 |
KEEP AS NON CORE |
Summary: A cytosolic pool of HRAS exists transiently before and during membrane targeting.
Reason: Newly synthesized HRAS and the p19 isoform can be cytosolic, so the annotation is acceptable, but the functionally important locations are the plasma membrane and Golgi/endomembranes.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
prenylation drives nascent Ras proteins to **ER and Golgi** before subsequent trafficking to the plasma membrane
|
|
GO:0043410
positive regulation of MAPK cascade
|
IDA
PMID:23027131 Wnt4 inhibits cell motility induced by oncogenic Ras. |
ACCEPT |
Summary: HRAS positively regulates MAPK cascade signaling.
Reason: Positive regulation of MAPK cascade is a proximal canonical Ras output, although PMID:23027131 itself is an oncogenic Ras model and distal phenotypes should be reviewed cautiously.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
“Ras protein signal transduction” and “positive regulation of MAPK cascade” are generally **core** for HRAS, but very specific outcome terms (e.g., “cell cycle progression” as a default) should be restricted to contexts with strong, direct, wild-type evidence.
file:human/HRAS/HRAS-deep-research-falcon.md
Positive regulation of MAPK cascade | RAS signaling is funneled strongly into RAF-MEK-ERK, and HRAS contributes to ERK output and MAPK signaling dynamics.
|
|
GO:0003924
GTPase activity
|
TAS
Reactome:R-HSA-9649736 |
ACCEPT |
Summary: HRAS has intrinsic GTPase activity.
Reason: GTP hydrolysis is the core molecular switch activity of HRAS.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Intrinsic GTPase activity is **accelerated by GAPs**, while **GEFs promote GDP→GTP exchange**.
|
|
GO:0160185
phospholipase C activator activity
|
IDA
PMID:11022048 Regulation of a novel human phospholipase C, PLCepsilon, thr... |
KEEP AS NON CORE |
Summary: HRAS can directly activate PLCepsilon in a GTP-dependent manner.
Reason: This is a well-supported specific effector activity, but it represents one downstream branch rather than the core HRAS molecular function.
Supporting Evidence:
PMID:11022048
The Ras-associating domain of PLCepsilon specifically binds to the GTP-bound forms of Ha-Ras and Rap1A.
PMID:11022048
These results indicate that Ras directly regulates phosphoinositide breakdown through membrane targeting of PLCepsilon.
|
|
GO:0098696
regulation of neurotransmitter receptor localization to postsynaptic specialization membrane
|
IDA
PMID:12202034 Ras and Rap control AMPA receptor trafficking during synapti... |
KEEP AS NON CORE |
Summary: Ras relays NMDA-R/CaMKII signaling to drive synaptic delivery of AMPA receptors during long-term potentiation, a neuron-specific downstream output of Ras signaling.
Reason: This is a well-supported but cell-type-specific (postsynaptic) function that is a distal consequence of Ras-MAPK signaling rather than the core molecular switch function of HRAS.
Supporting Evidence:
PMID:12202034
Ras relays the NMDA-R and CaMKII signaling that drives synaptic delivery of AMPA-Rs during long-term potentiation.
|
|
GO:0098696
regulation of neurotransmitter receptor localization to postsynaptic specialization membrane
|
IMP
PMID:12202034 Ras and Rap control AMPA receptor trafficking during synapti... |
KEEP AS NON CORE |
Summary: Perturbation of Ras alters synaptic AMPA receptor delivery during LTP, supporting a non-core synaptic-plasticity role.
Reason: The IMP evidence supports a neuron-specific role downstream of Ras-MAPK signaling; it is a legitimate process annotation but non-core relative to the GTPase/signal-transduction function of HRAS.
Supporting Evidence:
PMID:12202034
Ras relays the NMDA-R and CaMKII signaling that drives synaptic delivery of AMPA-Rs during long-term potentiation.
|
|
GO:0098978
glutamatergic synapse
|
IDA
PMID:12202034 Ras and Rap control AMPA receptor trafficking during synapti... |
KEEP AS NON CORE |
Summary: HRAS functions in postsynaptic signaling at glutamatergic synapses during synaptic plasticity.
Reason: The glutamatergic synapse location reflects a neuron-specific context for Ras signaling and is a valid but non-core localization relative to plasma membrane and Golgi.
Supporting Evidence:
PMID:12202034
we examine the small GTPases Ras and Rap in the postsynaptic signaling underlying synaptic plasticity
|
|
GO:0098978
glutamatergic synapse
|
IMP
PMID:12202034 Ras and Rap control AMPA receptor trafficking during synapti... |
KEEP AS NON CORE |
Summary: Manipulation of Ras at glutamatergic synapses alters AMPA receptor trafficking during plasticity.
Reason: This synapse-localization annotation is supported but represents a neuron-specific context rather than a core HRAS localization.
Supporting Evidence:
PMID:12202034
we examine the small GTPases Ras and Rap in the postsynaptic signaling underlying synaptic plasticity
|
|
GO:0032956
regulation of actin cytoskeleton organization
|
IDA
PMID:23027131 Wnt4 inhibits cell motility induced by oncogenic Ras. |
KEEP AS NON CORE |
Summary: This is a downstream motility phenotype from an oncogenic Ras model, not a core HRAS function.
Reason: The annotation is biologically plausible as a distal Ras signaling output, but it should be marked non-core because the evidence is from malignant transformation/oncogenic Ras context.
Supporting Evidence:
PMID:23027131
Wnt4 interferes with Ras-induced actin cytoskeleton reorganization through non-canonical pathways, by altering the balance between the activation of different Rho-family small guanosine triphosphatases (GTPases).
|
|
GO:0051726
regulation of cell cycle
|
IDA
PMID:9054499 Oncogenic ras provokes premature cell senescence associated ... |
KEEP AS NON CORE |
Summary: Cell-cycle arrest is a downstream outcome of oncogenic Ras-induced senescence.
Reason: This annotation is supported as a context-specific oncogenic Ras outcome but should not be represented as the core normal function of HRAS.
Supporting Evidence:
PMID:9054499
The arrest induced by ras is accompanied by accumulation of p53 and p16, and is phenotypically indistinguishable from cellular senescence.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9647994 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-6802834 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-6802908 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-6802918 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-6802922 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-6802924 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-6802925 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-6802926 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-6802937 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-6802941 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-6802942 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-6802943 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-6803233 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-6803234 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-6803240 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-8936731 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9651280 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0000139
Golgi membrane
|
TAS
Reactome:R-HSA-9647980 |
ACCEPT |
Summary: HRAS transits and cycles through Golgi membranes during palmitoylation-dependent trafficking, consistent with this Reactome location.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
palmitoylation is **reversible/dynamic**, supporting HRAS cycling between Golgi and plasma membrane
|
|
GO:0000139
Golgi membrane
|
TAS
Reactome:R-HSA-9647982 |
ACCEPT |
Summary: HRAS transits and cycles through Golgi membranes during palmitoylation-dependent trafficking, consistent with this Reactome location.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
palmitoylation is **reversible/dynamic**, supporting HRAS cycling between Golgi and plasma membrane
|
|
GO:0005789
endoplasmic reticulum membrane
|
TAS
Reactome:R-HSA-9647978 |
ACCEPT |
Summary: Newly prenylated HRAS is processed at the ER membrane (RCE1/ICMT) before onward trafficking, consistent with this Reactome location.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
prenylation drives nascent Ras proteins to **ER and Golgi** before subsequent trafficking to the plasma membrane
|
|
GO:0005789
endoplasmic reticulum membrane
|
TAS
Reactome:R-HSA-9647999 |
ACCEPT |
Summary: Newly prenylated HRAS is processed at the ER membrane (RCE1/ICMT) before onward trafficking, consistent with this Reactome location.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
prenylation drives nascent Ras proteins to **ER and Golgi** before subsequent trafficking to the plasma membrane
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-1168636 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-1225951 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-1225957 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-1250383 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-1306972 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-1433471 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-170986 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-177938 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-177945 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-186834 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-210977 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-2179407 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-2424477 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-392054 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5218845 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5621573 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5624486 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5624492 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5624494 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5637806 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5637808 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5654392 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5654402 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5654413 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5654426 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5654600 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5654618 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5654647 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5654663 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5655241 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5655277 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5655326 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5655347 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5658231 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5658435 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5672950 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5672965 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5672966 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5672969 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5672972 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5672973 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5672978 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5672980 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5674018 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5674022 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5675417 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5675431 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5675433 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-6802837 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-8851827 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-8851877 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-8851899 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-8941613 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-8941618 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-8941623 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-8941628 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-8981353 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-8981355 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9607304 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9632906 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9632918 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9634418 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9647980 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9649733 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9649735 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9649736 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9653108 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9656209 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9656211 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9656212 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9656213 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9656214 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9656215 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9657599 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9657603 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9657606 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9657608 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9658253 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9660557 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9664991 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9665009 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9665404 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9665408 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9665700 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9665707 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9670436 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9672163 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9672170 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9695853 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-9703441 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005789
endoplasmic reticulum membrane
|
TAS
Reactome:R-HSA-9647977 |
ACCEPT |
Summary: Newly prenylated HRAS is processed at the ER membrane (RCE1/ICMT) before onward trafficking, consistent with this Reactome location.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
prenylation drives nascent Ras proteins to **ER and Golgi** before subsequent trafficking to the plasma membrane
|
|
GO:0005789
endoplasmic reticulum membrane
|
TAS
Reactome:R-HSA-9647982 |
ACCEPT |
Summary: Newly prenylated HRAS is processed at the ER membrane (RCE1/ICMT) before onward trafficking, consistent with this Reactome location.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
prenylation drives nascent Ras proteins to **ER and Golgi** before subsequent trafficking to the plasma membrane
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-9647978 |
KEEP AS NON CORE |
Summary: A cytosolic pool of HRAS exists prior to and during membrane targeting, consistent with this Reactome reaction location.
Reason: This Reactome TAS row places a HRAS reaction in the cytosol, consistent with the soluble/pre-membrane pool; the location is valid but non-core relative to the plasma membrane and Golgi/endomembranes.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
prenylation drives nascent Ras proteins to **ER and Golgi** before subsequent trafficking to the plasma membrane
|
|
GO:0090314
positive regulation of protein targeting to membrane
|
IMP
PMID:11022048 Regulation of a novel human phospholipase C, PLCepsilon, thr... |
KEEP AS NON CORE |
Summary: GTP-bound HRAS recruits PLCepsilon to the membrane, promoting membrane targeting of this effector.
Reason: This is a specific, well-supported consequence of HRAS-GTP binding the PLCepsilon RA domain and recruiting it to membranes, but it is one effector branch rather than the core HRAS molecular function.
Supporting Evidence:
PMID:11022048
These results indicate that Ras directly regulates phosphoinositide breakdown through membrane targeting of PLCepsilon.
|
|
GO:0071480
cellular response to gamma radiation
|
IDA
PMID:16213212 Regulation of p53 translation and induction after DNA damage... |
MARK AS OVER ANNOTATED |
Summary: The cited reference concerns RPL26/nucleolin control of p53 translation after irradiation and does not establish a direct, proximal HRAS role in the gamma-radiation response.
Reason: PMID:16213212 focuses on p53 translational induction by RPL26 and nucleolin after DNA damage; there is no direct evidence here that wild-type HRAS is a proximal mediator of the cellular response to gamma radiation, so this is a distal/indirect over-annotation.
Supporting Evidence:
PMID:16213212
Ribosomal protein L26 (RPL26) and nucleolin were found to bind to the 5' untranslated region (UTR) of p53 mRNA and to control p53 translation and induction after DNA damage.
|
|
GO:0003924
GTPase activity
|
IMP
PMID:9230043 Regional polysterism in the GTP-bound form of the human c-Ha... |
ACCEPT |
Summary: HRAS has intrinsic GTPase activity, a core property of this small GTPase switch.
Reason: Intrinsic GTP hydrolysis is the defining catalytic function of HRAS and is well established structurally and biochemically; this is a core molecular function.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Intrinsic GTPase activity is **accelerated by GAPs**, while **GEFs promote GDP→GTP exchange**.
|
|
GO:0005525
GTP binding
|
IMP
PMID:9230043 Regional polysterism in the GTP-bound form of the human c-Ha... |
ACCEPT |
Summary: HRAS binds GTP with high affinity as part of its nucleotide-dependent switch.
Reason: GTP binding is a core molecular function of HRAS, well supported by structural studies of the GTP-bound conformation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS is a canonical RAS small GTPase that binds GDP/GTP with high affinity and functions as a nucleotide-dependent molecular switch.
|
|
GO:0019003
GDP binding
|
IMP
PMID:8142349 Solution structure and dynamics of ras p21.GDP determined by... |
ACCEPT |
Summary: HRAS binds GDP in its inactive state, completing the GDP/GTP switch cycle.
Reason: GDP binding (the OFF state of the switch) is a core molecular function of HRAS, demonstrated by NMR structural studies of the GDP-bound form.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
RAS proteins (including HRAS) are **GTP hydrolases** that function as **binary molecular switches**: GDP-bound is “OFF,” GTP-bound is “ON,”
|
|
GO:0019003
GDP binding
|
IMP
PMID:9230043 Regional polysterism in the GTP-bound form of the human c-Ha... |
ACCEPT |
Summary: HRAS binds GDP in its inactive state, completing the GDP/GTP switch cycle.
Reason: GDP binding is a core molecular function of HRAS; this duplicate IMP annotation is consistent with the GDP/GTP switch model.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
RAS proteins (including HRAS) are **GTP hydrolases** that function as **binary molecular switches**: GDP-bound is “OFF,” GTP-bound is “ON,”
|
|
GO:0003924
GTPase activity
|
IDA
PMID:9178006 Mechanism of activation of the Caenorhabditis elegans ras ho... |
ACCEPT |
Summary: HRAS has intrinsic GTPase activity (inferred from the conserved let-60 Ras activation study).
Reason: GTP hydrolysis is the core catalytic molecular function of HRAS and is conserved across the Ras family.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Intrinsic GTPase activity is **accelerated by GAPs**, while **GEFs promote GDP→GTP exchange**.
|
|
GO:0005886
plasma membrane
|
IDA
PMID:17724343 Spatial regulation of Raf kinase signaling by RKTG. |
ACCEPT |
Summary: HRAS localizes to the plasma membrane, where its signaling is spatially regulated (e.g., by RKTG).
Reason: Direct evidence supports plasma membrane localization, the principal signaling location of mature, lipidated HRAS.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-4093331 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-4093339 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-6802914 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-6802915 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-6802916 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-6802919 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-6802921 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-6803230 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-8936676 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-NUL-9617449 |
ACCEPT |
Summary: The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
Reason: This is a bulk Reactome TAS localization row placing HRAS in a membrane compartment consistent with its established lipidation-dependent trafficking and signaling; the location is correct and accepted.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005515
protein binding
|
IPI
PMID:11598133 Nedd4 regulates ubiquitination and stability of the guanine-... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with the GEF CNrasGEF (Nedd4 regulation).
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:10608844 RA-GEF, a novel Rap1A guanine nucleotide exchange factor con... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with RA-GEF, a Rap1A/Ras-associating GEF.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0010629
negative regulation of gene expression
|
IDA
PMID:23027131 Wnt4 inhibits cell motility induced by oncogenic Ras. |
MARK AS OVER ANNOTATED |
Summary: Negative regulation of gene expression is a distal transcriptional output from an oncogenic Ras transformation model (Wnt4/miR-24 axis).
Reason: PMID:23027131 uses oncogenic Ras-induced malignant transformation; transcriptional/gene-expression changes are distal consequences rather than a proximal, direct molecular function of wild-type HRAS.
Supporting Evidence:
PMID:23027131
By using a model of malignant transformation induced by Ras, we identified Wnt4 as an early target of Ras oncogenic signaling.
|
|
GO:0030335
positive regulation of cell migration
|
IDA
PMID:23027131 Wnt4 inhibits cell motility induced by oncogenic Ras. |
KEEP AS NON CORE |
Summary: Promotion of cell migration is a downstream motility phenotype of oncogenic Ras signaling.
Reason: Cell migration is a plausible distal Ras output but is documented here in an oncogenic transformation context; it is non-core relative to the HRAS switch function.
Supporting Evidence:
PMID:23027131
Wnt4 inhibits cell motility induced by oncogenic Ras.
|
|
GO:0045944
positive regulation of transcription by RNA polymerase II
|
IDA
PMID:23027131 Wnt4 inhibits cell motility induced by oncogenic Ras. |
MARK AS OVER ANNOTATED |
Summary: Positive transcriptional regulation is a distal output from an oncogenic Ras transformation model.
Reason: Transcriptional activation in this study is a downstream consequence of oncogenic Ras signaling, not a direct, proximal HRAS molecular function.
Supporting Evidence:
PMID:23027131
By using a model of malignant transformation induced by Ras, we identified Wnt4 as an early target of Ras oncogenic signaling.
|
|
GO:0090303
positive regulation of wound healing
|
IDA
PMID:23027131 Wnt4 inhibits cell motility induced by oncogenic Ras. |
MARK AS OVER ANNOTATED |
Summary: Wound-healing regulation is a distal phenotype inferred from oncogenic Ras-driven motility assays.
Reason: This is a far-downstream phenotypic readout of oncogenic Ras-induced cell motility rather than a proximal, mechanistically supported function of wild-type HRAS.
Supporting Evidence:
PMID:23027131
Wnt4 inhibits cell motility induced by oncogenic Ras.
|
|
GO:1900029
positive regulation of ruffle assembly
|
IDA
PMID:23027131 Wnt4 inhibits cell motility induced by oncogenic Ras. |
KEEP AS NON CORE |
Summary: Ruffle assembly is a cytoskeletal output of oncogenic Ras signaling via Rho-family GTPases.
Reason: Membrane ruffling downstream of Ras-driven actin remodeling is plausible but indirect (mediated by Rho-family GTPases) and documented in an oncogenic context, so it is non-core.
Supporting Evidence:
PMID:23027131
Wnt4 interferes with Ras-induced actin cytoskeleton reorganization through non-canonical pathways, by altering the balance between the activation of different Rho-family small guanosine triphosphatases (GTPases).
|
|
GO:2000630
positive regulation of miRNA metabolic process
|
IDA
PMID:23027131 Wnt4 inhibits cell motility induced by oncogenic Ras. |
MARK AS OVER ANNOTATED |
Summary: Regulation of miR-24 is a distal transcriptional/RNA output from an oncogenic Ras transformation model.
Reason: miRNA metabolic regulation here is a downstream consequence of oncogenic Ras signaling rather than a direct, proximal HRAS molecular function.
Supporting Evidence:
PMID:23027131
By using a model of malignant transformation induced by Ras, we identified Wnt4 as an early target of Ras oncogenic signaling.
|
|
GO:0005515
protein binding
|
IPI
PMID:10369681 Aiolos transcription factor controls cell death in T cells b... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with a partner reported in an Aiolos/Bcl-2 T-cell study.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0045944
positive regulation of transcription by RNA polymerase II
|
IDA
PMID:22065586 Oncogenic Ras and B-Raf proteins positively regulate death r... |
MARK AS OVER ANNOTATED |
Summary: Oncogenic Ras induces DR5 transcription via ERK/JNK and downstream transcription factors (CHOP, Elk1, c-Jun), a distal transcriptional output.
Reason: Transcriptional regulation of DR5 here is several steps downstream of oncogenic Ras signaling and mediated by ERK/JNK and multiple transcription factors, so it is not a proximal, direct HRAS function.
Supporting Evidence:
PMID:22065586
Ras induces DR5 expression through co-activation of ERK/RSK and JNK signaling pathways and subsequent cooperative effects among the transcriptional factors CHOP, Elk1, and c-Jun to enhance DR5 gene transcription.
|
|
GO:0046330
positive regulation of JNK cascade
|
IDA
PMID:22065586 Oncogenic Ras and B-Raf proteins positively regulate death r... |
KEEP AS NON CORE |
Summary: Oncogenic Ras can co-activate the JNK signaling cascade.
Reason: JNK activation is a recognized but secondary/context-dependent Ras output (relative to the canonical RAF-MEK-ERK cascade) and is documented here in an oncogenic context, so it is non-core.
Supporting Evidence:
PMID:22065586
Ras induces DR5 expression through co-activation of ERK/RSK and JNK signaling pathways
|
|
GO:0070374
positive regulation of ERK1 and ERK2 cascade
|
IDA
PMID:22065586 Oncogenic Ras and B-Raf proteins positively regulate death r... |
ACCEPT |
Summary: HRAS positively regulates the ERK1/ERK2 cascade, a core proximal Ras output.
Reason: Activation of the ERK1/2 (RAF-MEK-ERK) cascade is the canonical, proximal signaling output of HRAS-GTP and is a core process annotation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
RAS signaling is funneled strongly into RAF-MEK-ERK, and HRAS contributes to ERK output and MAPK signaling dynamics.
|
|
GO:0005515
protein binding
|
IPI
PMID:14500341 Alternative splicing of the human proto-oncogene c-H-ras ren... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with a reported physical interaction partner.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005525
GTP binding
|
IDA
PMID:14500341 Alternative splicing of the human proto-oncogene c-H-ras ren... |
ACCEPT |
Summary: HRAS binds GTP, a core molecular function of this small GTPase.
Reason: GTP binding is a core, well-established molecular function of HRAS as a nucleotide-dependent switch.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS is a canonical RAS small GTPase that binds GDP/GTP with high affinity and functions as a nucleotide-dependent molecular switch.
|
|
GO:0005794
Golgi apparatus
|
IDA
PMID:14500341 Alternative splicing of the human proto-oncogene c-H-ras ren... |
ACCEPT |
Summary: The canonical p21 H-Ras localizes to Golgi membranes during lipidation-dependent trafficking.
Reason: Golgi localization is consistent with HRAS palmitoylation cycles and ER/Golgi processing; this is a valid localization annotation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
palmitoylation is **reversible/dynamic**, supporting HRAS cycling between Golgi and plasma membrane
|
|
GO:0005886
plasma membrane
|
IDA
PMID:14500341 Alternative splicing of the human proto-oncogene c-H-ras ren... |
ACCEPT |
Summary: The canonical p21 H-Ras localizes to the plasma membrane.
Reason: Plasma membrane localization is the principal signaling location of mature lipidated HRAS.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0005794
Golgi apparatus
|
IDA
PMID:21968647 PAQR10 and PAQR11 mediate Ras signaling in the Golgi apparat... |
ACCEPT |
Summary: HRAS localizes to and signals from the Golgi apparatus, where PAQR10/PAQR11 promote its Golgi localization and ERK activation.
Reason: Golgi localization and Golgi-based Ras signaling are directly supported; this is a valid HRAS localization annotation.
Supporting Evidence:
PMID:21968647
Overexpression of PAQR10/PAQR11 markedly elevates Golgi localization of HRas, NRas and KRas4A, but not KRas4B.
|
|
GO:0005886
plasma membrane
|
IDA
PMID:21968647 PAQR10 and PAQR11 mediate Ras signaling in the Golgi apparat... |
ACCEPT |
Summary: HRAS localizes to the plasma membrane in addition to the Golgi pool.
Reason: Plasma membrane localization is the principal signaling location of HRAS and is consistent with this study of Golgi vs PM Ras pools.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0090398
cellular senescence
|
IDA
PMID:9054499 Oncogenic ras provokes premature cell senescence associated ... |
KEEP AS NON CORE |
Summary: Oncogenic Ras induces premature senescence in primary cells, a context-dependent outcome.
Reason: The senescence evidence comes from oncogenic Ras overexpression in primary cells and should not be treated as a core function of wild-type HRAS.
Supporting Evidence:
PMID:9054499
Here we show that expression of oncogenic ras in primary human or rodent cells results in a permanent G1 arrest.
|
|
GO:0005515
protein binding
|
IPI
PMID:11980706 The complex of Arl2-GTP and PDE delta: from structure to fun... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with a partner reported in an Arl2-GTP/PDEdelta study.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0050679
positive regulation of epithelial cell proliferation
|
IMP
PMID:20154697 An oncogene-tumor suppressor cascade drives metastatic prost... |
KEEP AS NON CORE |
Summary: Activation of Ras (via DAB2IP/RasGAP loss) promotes prostate epithelial proliferation and metastasis, a downstream cancer-context phenotype.
Reason: Epithelial proliferation here arises from loss of the RasGAP DAB2IP in a metastatic prostate cancer model; it is a context-dependent downstream output rather than a core wild-type HRAS function.
Supporting Evidence:
PMID:20154697
loss of the Ras GTPase-activating protein (RasGAP) gene DAB2IP induces metastatic prostate cancer in an orthotopic mouse tumor model.
|
|
GO:0008284
positive regulation of cell population proliferation
|
IDA
PMID:9765203 Premature senescence involving p53 and p16 is activated in r... |
KEEP AS NON CORE |
Summary: Sustained Ras/MEK-MAPK signaling can promote proliferation, a context-dependent downstream outcome.
Reason: Proliferation is a canonical but context-dependent Ras output; the cited study links constitutive MEK/MAPK signaling to proliferation/senescence depending on context, so it is non-core.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
RAS-ERK signaling dynamics can bias proliferation versus differentiation outputs, but these outcomes depend strongly on cell type and signaling kinetics.
|
|
GO:0043410
positive regulation of MAPK cascade
|
IDA
PMID:9765203 Premature senescence involving p53 and p16 is activated in r... |
ACCEPT |
Summary: HRAS positively regulates the MAPK cascade, a core proximal Ras output.
Reason: Positive regulation of the MAPK (RAF-MEK-ERK) cascade is the canonical proximal signaling output of HRAS-GTP and is a core process.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
RAS proteins sit at the apex of the **RAF–MEK–ERK (MAPK) cascade**, and Ras-effector binding directly routes signals into MAPK outputs.
|
|
GO:0005525
GTP binding
|
IDA
PMID:17260967 GTP binding is essential to the protein kinase activity of L... |
ACCEPT |
Summary: HRAS binds GTP; the cited reference uses HRAS as a reference Ras-like GTP binding protein when characterizing the LRRK2 ROC domain.
Reason: GTP binding is a core, well-established molecular function of HRAS, regardless of the comparative context of the citing paper.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS is a canonical RAS small GTPase that binds GDP/GTP with high affinity and functions as a nucleotide-dependent molecular switch.
|
|
GO:0008285
negative regulation of cell population proliferation
|
IDA
PMID:9054499 Oncogenic ras provokes premature cell senescence associated ... |
KEEP AS NON CORE |
Summary: Oncogenic Ras can negatively regulate proliferation by triggering premature senescence/G1 arrest in primary cells.
Reason: This anti-proliferative (senescence) output is an oncogenic-Ras, context-dependent phenotype in primary cells and is not a core wild-type HRAS function.
Supporting Evidence:
PMID:9054499
The arrest induced by ras is accompanied by accumulation of p53 and p16, and is phenotypically indistinguishable from cellular senescence.
|
|
GO:0005515
protein binding
|
IPI
PMID:11022048 Regulation of a novel human phospholipase C, PLCepsilon, thr... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with the effector PLCepsilon (Ras-associating domain).
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:2122974 Modulation of guanine nucleotides bound to Ras in NIH3T3 cel... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with GTPase-activating protein (GAP) modulating Ras nucleotide state.
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:9219684 The Ras-RasGAP complex: structural basis for GTPase activati... |
MARK AS OVER ANNOTATED |
Summary: This IPI annotation records a physical interaction of HRAS with RasGAP (Ras-RasGAP complex structure).
Reason: The bare 'protein binding' (GO:0005515) term is uninformative for a hub GTPase like HRAS; where the interaction reflects a bona fide, nucleotide-state-dependent effector or regulator engagement it would be better captured by a specific binding term, and many large-scale interactome hits lack mechanistic validation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence.
|
|
GO:0007165
signal transduction
|
NAS
PMID:8607982 Ras-related proteins in signal transduction and growth contr... |
MODIFY |
Summary: HRAS transmits signals from growth factor receptors into downstream kinase cascades; the more specific term is Ras protein signal transduction.
Reason: The broad signal transduction term should be replaced with the specific Ras protein signal transduction term, which the cited review explicitly describes.
Proposed replacements:
Ras protein signal transduction
Supporting Evidence:
PMID:8607982
The ras p21 protooncogene products, H-ras, K-ras, and N-ras, transmit signals from growth factor receptors to a cascade of protein kinases that begins with the Raf protooncogene product.
|
|
GO:0009887
animal organ morphogenesis
|
TAS
PMID:10848592 Involvement of Ras and Ral in chemotactic migration of skele... |
MARK AS OVER ANNOTATED |
Summary: Organ morphogenesis is a distal developmental phenotype inferred from Ras/Ral involvement in myoblast chemotaxis and muscle development.
Reason: The cited study addresses Ras/Ral control of growth-factor-driven myoblast chemotaxis; organ morphogenesis is a far-downstream developmental outcome, not a proximal, direct HRAS molecular function.
Supporting Evidence:
PMID:10848592
Expression of a dominant-negative mutant of Ras inhibited chemotaxis of C2C12 myoblasts in response to basic fibroblast growth factor (bFGF), hepatocyte growth factor (HGF), and insulin-like growth factor 1 (IGF-1), key regulators of limb muscle development and skeletal muscle regeneration.
|
|
GO:0005737
cytoplasm
|
TAS
PMID:10842192 Increased oxidative stress with gene alteration in urinary b... |
KEEP AS NON CORE |
Summary: A generic cytoplasm localization, consistent with the soluble/pre-membrane pool of HRAS.
Reason: Cytoplasmic localization is plausible for a fraction of HRAS, but the functionally meaningful locations are the plasma membrane and Golgi/endomembranes; this generic term is non-core.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
prenylation drives nascent Ras proteins to **ER and Golgi** before subsequent trafficking to the plasma membrane
|
|
GO:0005886
plasma membrane
|
TAS
PMID:9020890 Ras activation in platelets after stimulation of the thrombi... |
ACCEPT |
Summary: Ras localizes to the plasma membrane in platelets, consistent with its lipidation-dependent membrane targeting.
Reason: Plasma membrane localization is the principal signaling location of mature HRAS and is directly observed here.
Supporting Evidence:
PMID:9020890
Immunofluorescence studies indicated that Ras was present in a peripheral rim pattern in fixed, permeabilized platelets, suggesting an intracellular, plasma membrane location.
|
|
GO:0005886
plasma membrane
|
TAS
PMID:9880516 A non-farnesylated Ha-Ras protein can be palmitoylated and t... |
ACCEPT |
Summary: Lipidated H-Ras localizes to the plasma membrane; palmitoylation can target H-Ras to the membrane even without farnesylation.
Reason: Plasma membrane localization driven by H-Ras lipid modifications is a core localization annotation.
Supporting Evidence:
file:human/HRAS/HRAS-deep-research-falcon.md
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
|
|
GO:0006935
chemotaxis
|
TAS
PMID:10848592 Involvement of Ras and Ral in chemotactic migration of skele... |
KEEP AS NON CORE |
Summary: Ras (with Ral) contributes to growth-factor-induced chemotactic migration of skeletal myoblasts, a cell-type-specific downstream output.
Reason: Chemotaxis is a plausible distal output of Ras signaling but is context-specific (myoblasts, via a Ras-Ral branch independent of MEK/PI3K here), so it is non-core relative to the GTPase switch function.
Supporting Evidence:
PMID:10848592
Here, we demonstrate that Ras is involved also in the chemotactic response of skeletal myoblasts.
|
|
GO:0007166
cell surface receptor signaling pathway
|
TAS
PMID:9020890 Ras activation in platelets after stimulation of the thrombi... |
KEEP AS NON CORE |
Summary: HRAS is activated downstream of cell-surface receptors (e.g., thrombin and thromboxane A2 receptors) in platelets.
Reason: Acting downstream of cell-surface receptors is consistent with HRAS biology, but this broad process is a context for, rather than a more specific statement of, the core Ras protein signal transduction function.
Supporting Evidence:
PMID:9020890
Activation of platelets with the thrombin receptor peptide42-50, the prostaglandin H2/thromboxane A2 mimetic U46619 or phorbol 12-myristate 13-acetate induced a rapid increase in GTP-bound, activated Ras.
|
Q: Which HRAS effector interactions in the GOA set are supported by direct GTP-state-dependent binding and should be converted from generic protein binding to specific effector-binding annotations?
Q: Which distal proliferation, transcription, migration, or developmental annotations are based on oncogenic mutant HRAS rather than normal wild-type HRAS signaling?
Q: Should HRAS compartment-specific signaling from plasma membrane, Golgi, and recycling endosome be represented with separate non-core localization or process annotations?
Experiment: Curate the generic protein-binding rows by mapping each interactor to nucleotide-state-dependent effector evidence and replacing supported rows with specific binding terms where available.
Experiment: Compare wild-type HRAS and oncogenic HRAS alleles in controlled cell systems for MAPK, PI3K, PLCepsilon, senescence, and transcriptional outputs to distinguish core signaling from mutant-specific phenotypes.
Experiment: Use live-cell imaging with palmitoylation/prenylation mutants to separate plasma membrane, Golgi, and recycling-endosome pools and their contribution to effector activation.
Question: You are an expert researcher providing comprehensive, well-cited information.
Provide detailed information focusing on:
1. Key concepts and definitions with current understanding
2. Recent developments and latest research (prioritize 2023-2024 sources)
3. Current applications and real-world implementations
4. Expert opinions and analysis from authoritative sources
5. Relevant statistics and data from recent studies
Format as a comprehensive research report with proper citations. Include URLs and publication dates where available.
Always prioritize recent, authoritative sources and provide specific citations for all major claims.
Concise GO annotation research for human HRAS / UniProt P01112 (GTPase HRas). Focus only on GO-relevant evidence: core molecular function as a small monomeric GTPase/GTP binding and GTP hydrolysis molecular switch; regulation by GEFs/GAPs; membrane targeting by CAAX prenylation/palmitoylation and plasma membrane/Golgi/endosome localization; Ras protein signal transduction and downstream RAF-MEK-ERK, PI3K-AKT, RalGDS and other effector pathways; evidence for positive regulation of MAPK cascade, cell proliferation/differentiation, actin cytoskeleton, apoptosis or senescence, and whether these should be core or non-core; protein binding annotations and specific effector binding terms; over-annotation risks for generic protein binding, broad cancer/development/cell cycle terms, transcriptional regulation, immune/inflammatory processes, and phenotypes from oncogenic mutants. Include caveats distinguishing normal HRAS function from oncogenic mutant/overexpression evidence. Include PMID/DOI citations and keep under 1500 words.
This report summarizes GO-relevant experimental/review evidence for the core Molecular Function (MF), Cellular Component (CC), and Biological Process (BP) annotations of human HRAS (P01112), focusing on its role as a small monomeric GTPase molecular switch; regulation by GEFs/GAPs; lipidation-driven membrane targeting and compartmental localization; and Ras signal transduction through canonical effectors (RAF–MEK–ERK, PI3K–AKT, RalGDS/Ral, RASSF). It also flags over-annotation risks, especially where evidence comes from oncogenic mutants, overexpression, or high-throughput interactomics without nucleotide-state validation.
RAS proteins (including HRAS) are GTP hydrolases that function as binary molecular switches: GDP-bound is “OFF,” GTP-bound is “ON,” and the ON state supports binding to downstream effector proteins. Intrinsic GTPase activity is accelerated by GAPs, while GEFs promote GDP→GTP exchange. These are core, canonical features that directly support GO MF terms such as GTP binding and GTPase activity as well as BP terms such as Ras protein signal transduction. (smith2023definingbonefide pages 1-2, mozzarelli2024functionalandstructural pages 1-3)
A key GO-relevant principle is that bona fide Ras effectors must bind RAS in a nucleotide-dependent manner (GTP-bound) and that binding should change effector activity; domain presence alone is not sufficient for effector designation. (smith2023definingbonefide pages 1-2, mozzarelli2024functionalandstructural pages 1-3)
RAS conformational changes occur prominently in switch I (≈ residues 30–40) and switch II (≈ residues 60–68), and GTP-bound RAS exposes these regions to enable effector association, forming the mechanistic basis for GO “effector binding” annotations and for avoiding generic “protein binding.” (adariani2021acomprehensiveanalysis pages 1-4)
HRAS contains a C-terminal CAAX motif that is post-translationally processed by a canonical sequence: farnesylation → AAX proteolysis (RCE1) → carboxymethylation (ICMT). The post-prenylation processing machinery is localized to endomembranes/ER, and prenylation drives nascent Ras proteins to ER and Golgi before subsequent trafficking to the plasma membrane. (wright2006thematicreviewseries pages 2-3, choy1999endomembranetraffickingof pages 1-2)
Choy et al. (Cell, 1999-07; DOI: 10.1016/S0092-8674(00)80607-8) provide mechanistic evidence that CAAX proteins are targeted to ER/Golgi, then transported onward, rather than being targeted directly from cytosol to the plasma membrane; for HRAS specifically, palmitoylation upstream of CAAX is a secondary targeting signal required for efficient plasma membrane expression. (choy1999endomembranetraffickingof pages 1-2)
Palmitoylation provides the “second signal” for HRAS membrane targeting beyond prenylation and supports vesicular transport from Golgi→plasma membrane; palmitoylation is reversible/dynamic, supporting HRAS cycling between Golgi and plasma membrane. (wright2006thematicreviewseries pages 2-3, berthiaume2002insiderinformationhow pages 1-2, lynch2015thedifferentialpalmitoylation pages 1-3)
Lynch et al. (J Cell Physiol, 2015-03; DOI: 10.1002/jcp.24779) describe H-Ras as doubly palmitoylated and distributed throughout Golgi stacks, with palmitoylation acting as an “affinity trap” in Golgi membranes and contributing to Golgi↔PM trafficking dynamics. (lynch2015thedifferentialpalmitoylation pages 1-3)
Taguchi & Misaki (Small GTPases, 2011-03; DOI: 10.4161/sgtp.2.2.15245) report that palmitoylated H-Ras localizes to recycling endosomes, proposed as a way-station in post-Golgi trafficking to the plasma membrane. This supports CC annotation to recycling endosome in contexts where HRAS endosomal trafficking is being curated. (taguchi2011palmitoylationpilotsras pages 1-3)
RAS proteins sit at the apex of the RAF–MEK–ERK (MAPK) cascade, and Ras-effector binding directly routes signals into MAPK outputs. Dynamic features of Ras–ERK signaling can encode distinct biological outcomes (e.g., proliferation vs differentiation) depending on stimulus duration/feedback. (kolch2023dynamicregulationof pages 1-2, kolch2023dynamicregulationof pages 11-11)
Kolch et al. (Biochem J, 2023-01; DOI: 10.1042/BCJ20220234) specifically note that HRAS produces higher baseline ERK activity than wild-type KRAS in comparative RAS-less MEF reconstitution experiments, supporting HRAS contribution to MAPK cascade activation (while still emphasizing that dynamics/feedback regulate phenotypic outcomes). (kolch2023dynamicregulationof pages 12-13)
Annotation guidance: “Ras protein signal transduction” and “positive regulation of MAPK cascade” are generally core for HRAS, but very specific outcome terms (e.g., “cell cycle progression” as a default) should be restricted to contexts with strong, direct, wild-type evidence.
PI3K is a recognized Ras effector pathway. Kolch et al. emphasize that effector selection depends on active RAS concentration: high-affinity effectors dominate at low RAS-GTP levels, while lower-affinity partners (including PI3K) become prevalent at high RAS activity levels, often more evident in oncogenic settings. (kolch2023dynamicregulationof pages 15-16, kolch2023dynamicregulationof pages 11-11)
Annotation guidance: “PI3K–AKT signaling” is part of canonical Ras biology, but annotating HRAS to broad survival/proliferation outcomes via PI3K should be conditioned on evidence that is not solely mutant-locked HRAS or transformed-cell phenotypes.
Kolch et al. summarize that in healthy tissues Ras signaling is largely funneled into three main pathways: RAF (MAPK), RAL (via RALGDS/RGL2), and RASSF5, and that six high-affinity effectors (ARAF, BRAF, RAF1, RALGDS, RGL2, RASSF5) can constitute up to ~80% of Ras effector complexes (quantitative). (kolch2023dynamicregulationof pages 11-11)
Kolch et al. describe that apoptotic vs proliferative outcomes can depend on kinetics and pathway competition, e.g., competition between MEK and MST2 for RAF1 coordinating proliferative ERK outputs vs proapoptotic MST2 signaling; sustained vs transient Ras activation can flip these outputs. This supports context-dependent annotations, but argues against default, unconditional HRAS annotations to apoptosis/senescence regulation without specific, physiological evidence. (kolch2023dynamicregulationof pages 13-14)
Because Ras engages many partners, GO MF annotations should, where possible, use specific binding terms supported by direct interaction evidence and nucleotide dependence criteria. Recent expert reviews stress that the minimal criterion for effector classification is binding only when RAS is GTP-bound, and that experimental validation is required (sequence motifs alone are insufficient). (mozzarelli2024functionalandstructural pages 1-3, smith2023definingbonefide pages 1-2)
Nakhaeizadeh et al. (PLoS ONE, 2016-12; DOI: 10.1371/journal.pone.0167145) report direct HRAS binding affinities (Kd) to isolated effector domains, supporting graded specificity rather than indiscriminate binding:
- CRAF/RAF1 RB domain: ~0.094 μM (high affinity)
- RASSF5 RA: ~0.238 μM
- RALGDS RA: ~2.50 μM
- PLCε RA2: ~3.70 μM
- PI3Kα RB: ~84.3 μM (much weaker)
These data support annotating specific effector binding (e.g., RAF binding, RASSF5 binding, RALGDS binding) and also suggest that PI3K binding may be weaker and potentially more conditional. (nakhaeizadeh2016theraseffectorinterface pages 6-7)
Primary studies cited within Nakhaeizadeh et al. include:
- Ras–c-Raf-1 RBD binding/kinetics: Biochemistry 1998, DOI 10.1021/bi980764f, PMID 9760267; FEBS Lett 1999 PMID 10386625 (nakhaeizadeh2016theraseffectorinterface pages 19-20)
- Ras–RalGDS: FEBS Lett 1999 PMID 10371160 (nakhaeizadeh2016theraseffectorinterface pages 19-20)
- Ras–RASSF5/NORE1A interactions involving switch regions: EMBO J 2008 DOI 10.1038/emboj.2008.125, PMID 18596699; Structure 2006 DOI 10.1016/j.str.2006.03.008, PMID 16698549 (nakhaeizadeh2016theraseffectorinterface pages 19-20)
Mozzarelli et al. (Molecular Cell, 2024-08; DOI: 10.1016/j.molcel.2024.06.027, URL https://doi.org/10.1016/j.molcel.2024.06.027) emphasize that many reported “effectors” require experimental validation, that RBD/RA presence is not sufficient, and that effector competition for limited RAS-GTP complicates interpretation of binding and downstream effects—important for conservative GO effector-binding and BP annotations. (mozzarelli2024functionalandstructural pages 1-3)
Kolch et al. (Biochem J, 2023-01; DOI: 10.1042/BCJ20220234, URL https://doi.org/10.1042/bcj20220234) highlight that BioID can produce false positives, that interactome overlap between isoforms/contexts can be limited, and that chronic oncogenic signaling drives extensive network rewiring—all of which argues for restricting HRAS GO BP annotations to proximal, mechanism-supported processes rather than distal phenotypes. (kolch2023dynamicregulationof pages 13-14, kolch2023dynamicregulationof pages 14-15)
1) Do not transfer oncogenic mutant phenotypes to wild-type HRAS GO BP terms by default. Oncogenic Ras can produce constitutive effector interactions, altered feedback, and network rewiring; some mutants remain regulatable by GEFs/GAPs, and outcomes depend on activation kinetics (sustained vs transient). (kolch2023dynamicregulationof pages 15-16, kolch2023dynamicregulationof pages 13-14)
2) Avoid overly broad BP terms (e.g., generic “cancer,” “development,” “cell cycle,” “transcriptional regulation,” “immune/inflammatory processes”) unless there is direct mechanistic evidence placing wild-type HRAS as a proximal regulator rather than a downstream correlate. Large interactome datasets include false positives and many context-specific interactors. (kolch2023dynamicregulationof pages 13-14, kolch2023dynamicregulationof pages 14-15)
3) Avoid generic MF “protein binding” where possible. Recent expert reviews stress that effector status requires GTP-dependent binding and functional impact; many reported interactors lack mechanistic validation. Use specific effector-binding terms (RAF1/CRAF binding, RALGDS binding, RASSF5 binding, PI3K binding) when directly supported. (mozzarelli2024functionalandstructural pages 1-3, smith2023definingbonefide pages 1-2, nakhaeizadeh2016theraseffectorinterface pages 6-7)
4) Be explicit about cellular compartment context for localization annotations: CAAX processing localizes HRAS to ER/Golgi during maturation, palmitoylation supports Golgi trapping and PM trafficking, and recycling endosome localization is supported but may be context-specific. (choy1999endomembranetraffickingof pages 1-2, lynch2015thedifferentialpalmitoylation pages 1-3, taguchi2011palmitoylationpilotsras pages 1-3)
The following table captures a conservative, evidence-driven set of core terms plus “avoid/flag” items.
| GO aspect | Suggested GO term label (plain English) | Evidence summary (1 sentence) | Key caveats | Supporting source |
|---|---|---|---|---|
| MF | GTP binding | HRAS is a canonical RAS small GTPase that binds GDP/GTP with high affinity and functions as a nucleotide-dependent molecular switch. | Core, well established | Smith 2023, DOI:10.1002/bies.202300088; Mozzarelli et al. 2024, DOI:10.1016/j.molcel.2024.06.027 (smith2023definingbonefide pages 1-2, mozzarelli2024functionalandstructural pages 1-3) |
| MF | Small monomeric GTPase activity / GTP hydrolysis | HRAS has intrinsic GTPase activity, with GAPs accelerating hydrolysis and GEFs promoting GDP-to-GTP exchange. | Do not infer mutant behavior to WT | Smith 2023, DOI:10.1002/bies.202300088; Kolch et al. 2023, DOI:10.1042/bcj20220234 (smith2023definingbonefide pages 1-2, kolch2023dynamicregulationof pages 15-16) |
| MF | Effector binding (GTP-dependent) | Bona fide HRAS effectors bind preferentially to the GTP-bound switch-region conformation rather than GDP-bound HRAS. | Require direct, nucleotide-dependent evidence | Smith 2023, DOI:10.1002/bies.202300088; Adariani et al. 2021, DOI:10.1016/j.jbc.2021.100626 (smith2023definingbonefide pages 1-2, adariani2021acomprehensiveanalysis pages 1-4) |
| MF | RAF1 / CRAF binding | Direct binding studies support high-affinity HRAS interaction with RAF-family RBDs, including CRAF/RAF1. | Prefer specific partner term over generic protein binding | Nakhaeizadeh et al. 2016, DOI:10.1371/journal.pone.0167145; Sydor et al. 1998, PMID:9760267 (nakhaeizadeh2016theraseffectorinterface pages 6-7, nakhaeizadeh2016theraseffectorinterface pages 19-20) |
| MF | RALGDS binding | HRAS directly binds the RALGDS RA domain in a GTP-dependent manner, supporting specific effector-binding annotation. | Affinity lower than RAF; context matters | Nakhaeizadeh et al. 2016, DOI:10.1371/journal.pone.0167145; Vetter et al. 1999, PMID:10371160 (nakhaeizadeh2016theraseffectorinterface pages 6-7, nakhaeizadeh2016theraseffectorinterface pages 19-20) |
| MF | RASSF5 binding | HRAS directly binds RASSF5/NORE1A RA-domain-containing effectors, involving switch-region contacts. | Use specific evidence; not all RASSF family equal | Nakhaeizadeh et al. 2016, DOI:10.1371/journal.pone.0167145; Stieglitz et al. 2008, DOI:10.1038/emboj.2008.125, PMID:18596699 (nakhaeizadeh2016theraseffectorinterface pages 6-7, nakhaeizadeh2016theraseffectorinterface pages 19-20) |
| MF | PI3K binding | HRAS can bind PI3K RBD-containing catalytic subunits, but measured affinity is substantially weaker than for RAF/RASSF5. | Keep as specific, possibly non-core partner binding | Nakhaeizadeh et al. 2016, DOI:10.1371/journal.pone.0167145; Smith 2023, DOI:10.1002/bies.202300088 (nakhaeizadeh2016theraseffectorinterface pages 6-7, smith2023definingbonefide pages 3-3) |
| BP | Ras protein signal transduction | HRAS is one of the canonical RAS proteins acting upstream of multiple effector pathways in Ras signal transduction. | Core BP term | Kolch et al. 2023, DOI:10.1042/bcj20220234 (kolch2023dynamicregulationof pages 1-2) |
| BP | Positive regulation of MAPK cascade | RAS signaling is funneled strongly into RAF-MEK-ERK, and HRAS contributes to ERK output and MAPK signaling dynamics. | Core but avoid over-specific phenotypes from mutants | Kolch et al. 2023, DOI:10.1042/bcj20220234 (kolch2023dynamicregulationof pages 12-13, kolch2023dynamicregulationof pages 11-11) |
| BP | PI3K-AKT pathway activation | PI3K is a recognized RAS effector pathway, especially engaged at higher RAS-GTP levels and in some oncogenic contexts. | Core Ras output, but context dependent for HRAS-specific strength | Kolch et al. 2023, DOI:10.1042/bcj20220234; Smith 2023, DOI:10.1002/bies.202300088 (kolch2023dynamicregulationof pages 11-11, smith2023definingbonefide pages 1-2) |
| BP | Ral signaling via RalGDS | High-affinity RAS effectors include RALGDS/RGL2, supporting HRAS participation in Ral GTPase signaling. | Reasonable pathway annotation if direct HRAS evidence retained | Kolch et al. 2023, DOI:10.1042/bcj20220234 (kolch2023dynamicregulationof pages 11-11) |
| BP | Regulation of proliferation or differentiation | RAS-ERK signaling dynamics can bias proliferation versus differentiation outputs, but these outcomes depend strongly on cell type and signaling kinetics. | Usually non-core/context specific | Kolch et al. 2023, DOI:10.1042/bcj20220234 (kolch2023dynamicregulationof pages 1-2, kolch2023dynamicregulationof pages 13-14) |
| BP | Apoptosis / senescence regulation | Pro- or anti-apoptotic outputs can arise through pathway competition (e.g., RAF1-MEK versus MST2) and mutant/kinetic context rather than constitutive normal HRAS function. | Flag for review, not default core | Kolch et al. 2023, DOI:10.1042/bcj20220234 (kolch2023dynamicregulationof pages 13-14, kolch2023dynamicregulationof pages 15-16) |
| CC | Plasma membrane localization | HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization. | Core CC term | Choy et al. 1999, DOI:10.1016/S0092-8674(00)80607-8; Wright & Philips 2006, DOI:10.1194/jlr.R600004-JLR200 (choy1999endomembranetraffickingof pages 1-2, wright2006thematicreviewseries pages 2-3) |
| CC | Golgi apparatus localization / trafficking | HRAS transits ER/Golgi during post-CAAX processing and palmitoylation, and cycles between Golgi and plasma membrane. | Core trafficking/localization term | Choy et al. 1999, DOI:10.1016/S0092-8674(00)80607-8; Lynch et al. 2015, DOI:10.1002/jcp.24779 (choy1999endomembranetraffickingof pages 1-2, lynch2015thedifferentialpalmitoylation pages 1-3) |
| CC | Recycling endosome localization | Palmitoylated HRAS has been reported on recycling endosomes as a waypoint in post-Golgi trafficking to the plasma membrane. | Useful but less core than PM/Golgi | Taguchi & Misaki 2011, DOI:10.4161/sgtp.2.2.15245 (taguchi2011palmitoylationpilotsras pages 1-3) |
| CC | Membrane targeting by CAAX prenylation and palmitoylation | HRAS uses CAAX farnesylation, AAX cleavage, carboxymethylation, and reversible palmitoylation as the core membrane-targeting logic. | PTM mechanism, not a location term by itself | Wright & Philips 2006, DOI:10.1194/jlr.R600004-JLR200; Berthiaume 2002, DOI:10.1126/stke.2002.152.pe41 (wright2006thematicreviewseries pages 2-3, berthiaume2002insiderinformationhow pages 1-2) |
| Avoid/flag for review | Generic protein binding | Broad protein-binding annotation adds little value when specific effector binding terms are available with direct evidence. | Over-annotation risk | Mozzarelli et al. 2024, DOI:10.1016/j.molcel.2024.06.027; Smith 2023, DOI:10.1002/bies.202300088 (mozzarelli2024functionalandstructural pages 1-3, smith2023definingbonefide pages 1-2) |
| Avoid/flag for review | Broad cancer/development/cell cycle terms from oncogenic mutants | Many mutant RAS phenotypes reflect constitutive signaling, network rewiring, or overexpression and should not be transferred wholesale to normal HRAS GO annotations. | Mutant/overexpression confound | Kolch et al. 2023, DOI:10.1042/bcj20220234; Smith 2023, DOI:10.1002/bies.202300088 (kolch2023dynamicregulationof pages 14-15, smith2023definingbonefide pages 1-2) |
| Avoid/flag for review | Transcriptional regulation, immune/inflammatory, or other distal phenotypes | High-throughput interactomics and downstream phenotypes often show context-specific rewiring and false positives, so distal process terms need direct mechanistic evidence. | Indirect/context-specific | Kolch et al. 2023, DOI:10.1042/bcj20220234; Mozzarelli et al. 2024, DOI:10.1016/j.molcel.2024.06.027 (kolch2023dynamicregulationof pages 13-14, mozzarelli2024functionalandstructural pages 1-3) |
Table: This table summarizes core and cautionary GO annotation elements for human HRAS, emphasizing direct, GO-relevant evidence for molecular function, signaling processes, localization, and specific effector interactions. It also flags common over-annotation risks from mutant, overexpression, and indirect phenotype-based evidence.
References
(smith2023definingbonefide pages 1-2): Matthew J. Smith. Defining bone fide effectors of ras gtpases. BioEssays, Jul 2023. URL: https://doi.org/10.1002/bies.202300088, doi:10.1002/bies.202300088. This article has 11 citations and is from a peer-reviewed journal.
(mozzarelli2024functionalandstructural pages 1-3): Alessandro M. Mozzarelli, Dhirendra K. Simanshu, and Pau Castel. Functional and structural insights into ras effector proteins. Molecular Cell, 84:2807-2821, Aug 2024. URL: https://doi.org/10.1016/j.molcel.2024.06.027, doi:10.1016/j.molcel.2024.06.027. This article has 35 citations and is from a highest quality peer-reviewed journal.
(adariani2021acomprehensiveanalysis pages 1-4): Soheila Rezaei Adariani, Neda S. Kazemein Jasemi, Farhad Bazgir, Christoph Wittich, Ehsan Amin, Claus A.M. Seidel, Radovan Dvorsky, and Mohammad R. Ahmadian. A comprehensive analysis of ras-effector interactions reveals interaction hotspots and new binding partners. The Journal of Biological Chemistry, 296:100626, Apr 2021. URL: https://doi.org/10.1016/j.jbc.2021.100626, doi:10.1016/j.jbc.2021.100626. This article has 31 citations.
(wright2006thematicreviewseries pages 2-3): Latasha P. Wright and Mark R. Philips. Thematic review series: lipid posttranslational modifications caax modification and membrane targeting of ras published, jlr papers in press, march 16, 2006. Journal of Lipid Research, 47:883-891, May 2006. URL: https://doi.org/10.1194/jlr.r600004-jlr200, doi:10.1194/jlr.r600004-jlr200. This article has 482 citations and is from a peer-reviewed journal.
(choy1999endomembranetraffickingof pages 1-2): Edwin Choy, Vi K. Chiu, Joseph Silletti, Marianna Feoktistov, Takashi Morimoto, David Michaelson, Ivan E. Ivanov, and Mark R. Philips. Endomembrane trafficking of ras the caax motif targets proteins to the er and golgi. Cell, 98:69-80, Jul 1999. URL: https://doi.org/10.1016/s0092-8674(00)80607-8, doi:10.1016/s0092-8674(00)80607-8. This article has 1054 citations and is from a highest quality peer-reviewed journal.
(berthiaume2002insiderinformationhow pages 1-2): Luc G. Berthiaume. Insider information: how palmitoylation of ras makes it a signaling double agent. Science's STKE, 2002:pe41-pe41, Oct 2002. URL: https://doi.org/10.1126/stke.2002.152.pe41, doi:10.1126/stke.2002.152.pe41. This article has 47 citations.
(lynch2015thedifferentialpalmitoylation pages 1-3): Stephen J. Lynch, Harriet Snitkin, Iwona Gumper, Mark R. Philips, David Sabatini, and Angel Pellicer. The differential palmitoylation states of n‐ras and h‐ras determine their distinct golgi subcompartment localizations. Journal of Cellular Physiology, 230:610-619, Mar 2015. URL: https://doi.org/10.1002/jcp.24779, doi:10.1002/jcp.24779. This article has 63 citations and is from a peer-reviewed journal.
(taguchi2011palmitoylationpilotsras pages 1-3): Tomohiko Taguchi and Ryo Misaki. Palmitoylation pilots ras to recycling endosomes. Small GTPases, 2:29-82-84, Mar 2011. URL: https://doi.org/10.4161/sgtp.2.2.15245, doi:10.4161/sgtp.2.2.15245. This article has 21 citations and is from a peer-reviewed journal.
(kolch2023dynamicregulationof pages 1-2): Walter Kolch, Dénes Berta, and Edina Rosta. Dynamic regulation of ras and ras signaling. Biochemical Journal, 480:1-23, Jan 2023. URL: https://doi.org/10.1042/bcj20220234, doi:10.1042/bcj20220234. This article has 103 citations and is from a domain leading peer-reviewed journal.
(kolch2023dynamicregulationof pages 11-11): Walter Kolch, Dénes Berta, and Edina Rosta. Dynamic regulation of ras and ras signaling. Biochemical Journal, 480:1-23, Jan 2023. URL: https://doi.org/10.1042/bcj20220234, doi:10.1042/bcj20220234. This article has 103 citations and is from a domain leading peer-reviewed journal.
(kolch2023dynamicregulationof pages 12-13): Walter Kolch, Dénes Berta, and Edina Rosta. Dynamic regulation of ras and ras signaling. Biochemical Journal, 480:1-23, Jan 2023. URL: https://doi.org/10.1042/bcj20220234, doi:10.1042/bcj20220234. This article has 103 citations and is from a domain leading peer-reviewed journal.
(kolch2023dynamicregulationof pages 15-16): Walter Kolch, Dénes Berta, and Edina Rosta. Dynamic regulation of ras and ras signaling. Biochemical Journal, 480:1-23, Jan 2023. URL: https://doi.org/10.1042/bcj20220234, doi:10.1042/bcj20220234. This article has 103 citations and is from a domain leading peer-reviewed journal.
(kolch2023dynamicregulationof pages 13-14): Walter Kolch, Dénes Berta, and Edina Rosta. Dynamic regulation of ras and ras signaling. Biochemical Journal, 480:1-23, Jan 2023. URL: https://doi.org/10.1042/bcj20220234, doi:10.1042/bcj20220234. This article has 103 citations and is from a domain leading peer-reviewed journal.
(nakhaeizadeh2016theraseffectorinterface pages 6-7): Hossein Nakhaeizadeh, Ehsan Amin, Saeideh Nakhaei-Rad, Radovan Dvorsky, and Mohammad Reza Ahmadian. The ras-effector interface: isoform-specific differences in the effector binding regions. PLoS ONE, 11:e0167145, Dec 2016. URL: https://doi.org/10.1371/journal.pone.0167145, doi:10.1371/journal.pone.0167145. This article has 97 citations and is from a peer-reviewed journal.
(nakhaeizadeh2016theraseffectorinterface pages 19-20): Hossein Nakhaeizadeh, Ehsan Amin, Saeideh Nakhaei-Rad, Radovan Dvorsky, and Mohammad Reza Ahmadian. The ras-effector interface: isoform-specific differences in the effector binding regions. PLoS ONE, 11:e0167145, Dec 2016. URL: https://doi.org/10.1371/journal.pone.0167145, doi:10.1371/journal.pone.0167145. This article has 97 citations and is from a peer-reviewed journal.
(kolch2023dynamicregulationof pages 14-15): Walter Kolch, Dénes Berta, and Edina Rosta. Dynamic regulation of ras and ras signaling. Biochemical Journal, 480:1-23, Jan 2023. URL: https://doi.org/10.1042/bcj20220234, doi:10.1042/bcj20220234. This article has 103 citations and is from a domain leading peer-reviewed journal.
(smith2023definingbonefide pages 3-3): Matthew J. Smith. Defining bone fide effectors of ras gtpases. BioEssays, Jul 2023. URL: https://doi.org/10.1002/bies.202300088, doi:10.1002/bies.202300088. This article has 11 citations and is from a peer-reviewed journal.
Initial Falcon pass, 2026-05-12. HRAS is a fully pending review, so I kept the
first curation pass focused on the most defensible core biology rather than
attempting all 258 annotations at once.
Core function: HRAS is a Ras-family small GTPase. UniProt summarizes that Ras
proteins bind GDP/GTP and have intrinsic GTPase activity [file:human/HRAS/HRAS-uniprot.txt
"Ras proteins bind GDP/GTP and possess intrinsic GTPase activity
(PubMed:12740440, PubMed:14500341, PubMed:9020151)."]. Falcon likewise frames
HRAS as a GDP/GTP molecular switch [file:human/HRAS/HRAS-deep-research-falcon.md
"RAS proteins (including HRAS) are GTP hydrolases that function as
binary molecular switches: GDP-bound is “OFF,” GTP-bound is “ON,” and
the ON state supports binding to downstream effector proteins."].
Core processes: Ras protein signal transduction and positive regulation of the
MAPK cascade are central. Falcon specifically recommends these as core HRAS
terms but warns against defaulting distal outcomes to core annotations
[file:human/HRAS/HRAS-deep-research-falcon.md "“Ras protein signal
transduction” and “positive regulation of MAPK cascade” are generally core
for HRAS, but very specific outcome terms (e.g., “cell cycle progression” as a
default) should be restricted to contexts with strong, direct, wild-type
evidence."].
Localization: HRAS membrane association is driven by CAAX processing and
palmitoylation, so plasma membrane and Golgi membrane are the safest core
locations in this first pass [file:human/HRAS/HRAS-deep-research-falcon.md
"HRAS contains a C-terminal CAAX motif that is post-translationally
processed by a canonical sequence: farnesylation → AAX proteolysis (RCE1)
→ carboxymethylation (ICMT)."].
Non-core and over-annotation cautions: proliferation, senescence, cell-cycle,
motility, transcriptional, and developmental terms are often downstream or
mutant/oncogenic-context phenotypes. PMID:9054499 is explicit that its senescence
evidence used oncogenic Ras PMID:9054499. PMID:23027131 likewise uses a malignant transformation model
PMID:23027131.
PLCE1 effector branch: PMID:11022048 supports direct GTP-dependent HRAS binding
and activation of PLCepsilon, so I kept GO:0160185 as a non-core effector branch
rather than core function PMID:11022048.
Left for later: most generic protein binding annotations remain PENDING. The
right follow-up is to replace individual generic protein-binding rows with
specific effector-binding terms only where there is direct, nucleotide-state
dependent binding evidence.
id: P01112
gene_symbol: HRAS
product_type: PROTEIN
status: INITIALIZED
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: >-
HRAS encodes H-Ras, a membrane-associated small GTPase that acts as a
GDP/GTP-regulated molecular switch in Ras signal transduction. Its core
function is GTP binding and hydrolysis with nucleotide-state-dependent
recruitment of effectors, especially pathways leading to RAF-MEK-ERK signaling;
membrane targeting through CAAX processing and palmitoylation localizes H-Ras
to plasma membrane and Golgi/endomembrane compartments. Many proliferation,
senescence, transcription, migration, and developmental annotations are
context-dependent downstream outcomes, often derived from oncogenic mutant or
overexpression studies, and should not be treated as the core molecular
function of wild-type HRAS.
alternative_products:
- name: 1 (H-Ras4A, p21)
id: P01112-1
- name: 2 (H-RasIDX, p19)
id: P01112-2
sequence_note: VSP_041597
existing_annotations:
- term:
id: GO:0005886
label: plasma membrane
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
HRAS is membrane-targeted and signals from the plasma membrane.
action: ACCEPT
reason: >-
Plasma membrane localization is central to HRAS signaling, supported by
CAAX processing and palmitoylation-dependent trafficking.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS contains a C-terminal **CAAX motif** that is post-translationally
processed by a canonical sequence: **farnesylation → AAX proteolysis
(RCE1) → carboxymethylation (ICMT)**.
- term:
id: GO:0007265
label: Ras protein signal transduction
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
HRAS is a canonical Ras-family GTPase that mediates Ras protein signal
transduction.
action: ACCEPT
reason: >-
Ras protein signal transduction is the core biological process for HRAS as
a GDP/GTP-regulated molecular switch.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
RAS proteins (including HRAS) are **GTP hydrolases** that function as
**binary molecular switches**: GDP-bound is “OFF,” GTP-bound is “ON,”
and the ON state supports binding to downstream effector proteins.
- term:
id: GO:0008284
label: positive regulation of cell population proliferation
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
HRAS signaling can promote proliferation, but this is a downstream and
context-dependent outcome rather than the core HRAS molecular function.
action: KEEP_AS_NON_CORE
reason: >-
Proliferation is a canonical outcome of Ras signaling in some cellular
contexts, but it depends on cell type, stimulus duration, feedback, and
mutant versus wild-type HRAS state.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
RAS-ERK signaling dynamics can bias proliferation versus
differentiation outputs, but these outcomes depend strongly on cell
type and signaling kinetics.
- term:
id: GO:0003924
label: GTPase activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
HRAS has intrinsic GTPase activity.
action: ACCEPT
reason: >-
GTP hydrolysis is the core molecular switch activity of HRAS.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Intrinsic GTPase activity is **accelerated by GAPs**, while **GEFs
promote GDP→GTP exchange**.
- term:
id: GO:0090398
label: cellular senescence
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
Cellular senescence is a context-dependent outcome of oncogenic Ras
signaling rather than the primary normal function of HRAS.
action: KEEP_AS_NON_CORE
reason: >-
Senescence evidence is strongly tied to oncogenic Ras expression and
should not be treated as the core function of wild-type HRAS.
supported_by:
- reference_id: PMID:9054499
supporting_text: >-
Here we show that expression of oncogenic ras in primary human or rodent
cells results in a permanent G1 arrest.
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Apoptosis/senescence: generally non-core default for HRAS
- term:
id: GO:0000139
label: Golgi membrane
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: >-
Golgi membrane localization is part of HRAS lipidation-dependent membrane
trafficking.
action: ACCEPT
reason: >-
HRAS is processed and trafficked through ER/Golgi membranes before plasma
membrane localization.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Palmitoylation provides the “second signal” for HRAS membrane targeting
beyond prenylation and supports vesicular transport from
**Golgi→plasma membrane**; palmitoylation is **reversible/dynamic**,
supporting HRAS cycling between Golgi and plasma membrane.
- term:
id: GO:0000165
label: MAPK cascade
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: >-
HRAS activates signaling through the RAF-MEK-ERK MAPK cascade.
action: ACCEPT
reason: >-
MAPK cascade signaling is a proximal canonical Ras output, although
distal phenotypic outcomes should be curated separately.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
RAS proteins sit at the apex of the **RAF–MEK–ERK (MAPK) cascade**, and
Ras-effector binding directly routes signals into MAPK outputs.
- term:
id: GO:0003924
label: GTPase activity
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: >-
HRAS has intrinsic GTPase activity.
action: ACCEPT
reason: >-
GTPase activity is the core catalytic molecular function of HRAS.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Intrinsic GTPase activity is **accelerated by GAPs**, while **GEFs
promote GDP→GTP exchange**.
- term:
id: GO:0003925
label: G protein activity
evidence_type: IEA
original_reference_id: GO_REF:0000003
review:
summary: >-
HRAS is a small monomeric GTPase rather than a heterotrimeric G protein;
the more precise annotation is GTPase activity.
action: MODIFY
reason: >-
GO:0003925 can cover Ras-family GTPases, but the annotation should use
GO:0003924 because it captures the catalytic GTP-hydrolysis function more
precisely.
proposed_replacement_terms:
- id: GO:0003924
label: GTPase activity
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS is a canonical RAS small GTPase that binds GDP/GTP with high
affinity and functions as a nucleotide-dependent molecular switch.
- term:
id: GO:0005525
label: GTP binding
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: >-
HRAS binds guanine nucleotides as part of its GDP/GTP switch mechanism.
action: ACCEPT
reason: >-
GTP binding is a core molecular function for Ras-family GTPases.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS is a canonical RAS small GTPase that binds GDP/GTP with high
affinity and functions as a nucleotide-dependent molecular switch.
- term:
id: GO:0005634
label: nucleus
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: >-
Nuclear localization is not characteristic of the canonical farnesylated,
membrane-anchored H-Ras p21 isoform.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The mature p21 H-Ras is targeted to the plasma membrane and
Golgi/endomembranes via CAAX prenylation and palmitoylation; nuclear
localization is reported mainly for the minor alternatively spliced p19
(H-RasIDX) isoform, so a general nuclear CC annotation over-projects onto
the main gene product.
supported_by:
- reference_id: PMID:14500341
supporting_text: >-
Both the endogenous and the transiently expressed p19 protein are
detected in COS-1 and HeLa cells and show nuclear diffuse and speckled
patterns as well as cytoplasmic localization.
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: >-
A broad cytoplasm annotation is consistent with HRAS biology but less
informative than its specific membrane locations.
action: KEEP_AS_NON_CORE
reason: >-
Newly synthesized and a fraction of HRAS exists in the cytoplasm prior to
membrane targeting, and the p19 isoform shows cytoplasmic localization;
however, the functionally meaningful locations are plasma membrane and
Golgi/endomembrane, so the generic cytoplasm term is retained as non-core.
supported_by:
- reference_id: PMID:14500341
supporting_text: >-
Both the endogenous and the transiently expressed p19 protein are
detected in COS-1 and HeLa cells and show nuclear diffuse and speckled
patterns as well as cytoplasmic localization.
- term:
id: GO:0005794
label: Golgi apparatus
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: >-
Golgi localization is supported by HRAS membrane trafficking and
palmitoylation cycles.
action: ACCEPT
reason: >-
HRAS cycles through Golgi membranes as part of its lipidation-dependent
targeting to signaling membranes.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Palmitoylation provides the “second signal” for HRAS membrane targeting
beyond prenylation and supports vesicular transport from
**Golgi→plasma membrane**; palmitoylation is **reversible/dynamic**,
supporting HRAS cycling between Golgi and plasma membrane.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: >-
HRAS localizes to the plasma membrane for Ras signaling.
action: ACCEPT
reason: >-
Plasma membrane localization is a core cellular context for HRAS
signal-transduction function.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Plasma membrane localization | HRAS membrane association is essential
for signaling, with lipid modifications enabling stable plasma membrane
localization.
- term:
id: GO:0007165
label: signal transduction
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: >-
The annotation captures the broad signaling role of HRAS, but Ras protein
signal transduction is more informative.
action: MODIFY
reason: >-
HRAS is specifically a Ras-family signal-transduction GTPase, so the
existing broad signal transduction term should be replaced with the
specific Ras protein signal transduction term.
proposed_replacement_terms:
- id: GO:0007265
label: Ras protein signal transduction
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Ras protein signal transduction | HRAS is one of the canonical RAS
proteins acting upstream of multiple effector pathways in Ras signal
transduction.
- term:
id: GO:0016020
label: membrane
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: >-
HRAS is membrane-associated, but the generic membrane term is less
informative than its specific plasma membrane and Golgi membrane
annotations.
action: MODIFY
reason: >-
HRAS lipidation targets it to specific membranes; the broad membrane term
should be replaced with the more precise plasma membrane location that is
central to its signaling.
proposed_replacement_terms:
- id: GO:0005886
label: plasma membrane
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid
modifications enabling stable plasma membrane localization.
- term:
id: GO:0048471
label: perinuclear region of cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: >-
Perinuclear localization is consistent with HRAS pools at the Golgi and
perinuclear endomembranes during lipidation-dependent trafficking.
action: KEEP_AS_NON_CORE
reason: >-
HRAS cycles through Golgi/recycling endosomes, which lie in the
perinuclear region, so this localization is plausible but secondary to the
plasma membrane and Golgi membrane annotations.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
palmitoylation is **reversible/dynamic**, supporting HRAS cycling
between Golgi and plasma membrane
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:11335720
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with PRA1/prenylated Rab acceptor (a receptor for prenylated small GTPases).
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:11857081
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with RASSF1A/NORE1 Ras-GTP binding proteins.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:12620389
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with RAF kinase (two-hybrid interactions).
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:12628188
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with the Ras-GEF SOS (feedback Ras-GTP activation site).
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:14724641
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with the effector IMP in mitogenic signalling complexes.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:15507210
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with the Ras activator SOS (autoinhibition).
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:15886098
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with the ABL activator/effector RIN1.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16316996
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with the RAP1 GEF Epac2.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16698549
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with NORE1/RASSF5 (C1 and RA domains).
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16810318
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with RASSF1C (DNA-damage/JNK context).
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:17084389
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with the Ras-GEF hSos1 (REM domain).
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:17540175
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with PI3K p110alpha (Ras-driven tumorigenesis).
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:18073111
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with RAF in the context of RasQ61 mutant transformation.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:18273062
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with a switch-region partner regulating H-Ras membrane orientation.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:18454158
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with the Ras activator SOS (membrane signal integration).
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:18596699
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with the tumour-suppressor effector NORE1A via Ras switch II.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:19063885
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with cell-transducing Ras inhibitors.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:19141281
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with the Ras activators SOS and RasGRF1.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:19222999
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with FKBP38 (Rheb/mTORC1 pathway reassessment).
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:19696784
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with a partner identified in a fission-yeast TACC study.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:20080631
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with partners affecting Ras membrane orientation/nanodomain localization.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:20133692
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with the Ras activator SOS (histone domain autoinhibition).
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:20133694
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with the Ras activator SOS (allosteric gating by histone domain).
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:20178605
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with putative Ras/Raf interaction inhibitors.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:20936779
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with MAP kinase interactome partners.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:22020336
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with PI3K p110delta isoform p37delta.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:22169110
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with RAF in drug-resistant CML (paradoxical activation).
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:24412244
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with driver/susceptibility partners in colorectal cancer.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:24441586
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with effectors and regulators detected by parallel NMR.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:24929361
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with Raf-1 and MST2/Hippo signalling partners.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:25241761
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with endogenous pathway partners profiled by proximity ligation.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:25684575
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with Raf-RBD (oncogenic RasQ61L allosteric effects).
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:26165597
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with the BRAF Ras-binding domain.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:26635368
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with neurofibromin GAP-related domain/SPRED1 (Legius/NF1 context).
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:28514442
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with protein-community partners from a large interactome map.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:30194290
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with RAS-isoform interactome partners (PIP5K1A study).
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:30518913
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with UBIAD1 (H-Ras C-terminal trafficking).
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:31209342
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with a substrate context in a geranylgeranyltransferase study.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:32814053
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with neurodegenerative-disease network partners.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:33961781
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with cell-specific interactome partners.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:34591612
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with breast-cancer interactome partners.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:34591642
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with head and neck cancer interactome partners.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:35512704
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with mutation-directed neo-interaction partners in cancer.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:35839996
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with isoform-specific, nucleotide-dependent RAS interactors.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:40205054
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with partners from multimodal cell maps.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:8332187
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with the c-Raf-1 amino-terminal regulatory domain.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:8670882
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with a Rac1-interacting membrane-ruffling protein.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:9144171
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with the effector RIN1.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:9447984
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with the Ras activator SOS (intramolecular regulation).
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:9488663
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with the potential Ras effector Nore1.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:9690470
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with the Ras GEF SOS (activation mechanism).
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:32296183
isoform: P01112-2
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with binary interactome partners (isoform P01112-2).
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0007265
label: Ras protein signal transduction
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
HRAS is directly involved in Ras protein signal transduction.
action: ACCEPT
reason: >-
This is the core biological process for the HRAS GTPase switch.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
“Ras protein signal transduction” and “positive regulation of MAPK
cascade” are generally **core** for HRAS, but very specific outcome
terms (e.g., “cell cycle progression” as a default) should be
restricted to contexts with strong, direct, wild-type evidence.
- term:
id: GO:0008286
label: insulin receptor signaling pathway
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
HRAS acts downstream of receptor tyrosine kinases including the insulin
receptor, but this is one specific RTK input among many rather than a core
HRAS-defining process.
action: KEEP_AS_NON_CORE
reason: >-
RAS GTPases relay signals from multiple growth-factor/RTK inputs (EGFR,
insulin receptor, etc.) into the MAPK and PI3K pathways; the insulin
receptor pathway is a legitimate but non-core context for HRAS, while the
core annotation is the general Ras protein signal transduction.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
RAS proteins sit at the apex of the **RAF–MEK–ERK (MAPK) cascade**, and
Ras-effector binding directly routes signals into MAPK outputs.
- term:
id: GO:0014044
label: Schwann cell development
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
Schwann cell development is a distal developmental outcome and is not a
core HRAS molecular function annotation.
action: MARK_AS_OVER_ANNOTATED
reason: >-
This automated IEA row appears to over-project broad Ras-family or
pathway-derived developmental biology onto HRAS; there is no direct
evidence in this review that wild-type HRAS is a proximal regulator of
Schwann cell development specifically.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
2) **Avoid overly broad BP terms** (e.g., generic “cancer,”
“development,” “cell cycle,” “transcriptional regulation,”
“immune/inflammatory processes”) unless there is direct mechanistic
evidence placing *wild-type HRAS* as a proximal regulator rather than a
downstream correlate. Large interactome datasets include false positives
and many context-specific interactors.
- term:
id: GO:0042552
label: myelination
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
Myelination is a distal developmental outcome and is not supported as a
core HRAS annotation.
action: MARK_AS_OVER_ANNOTATED
reason: >-
This automated IEA row appears to over-project broad Ras-family or
pathway-derived developmental biology onto HRAS; HRAS mutations can cause
developmental phenotypes, but that does not make myelination a proximal
wild-type HRAS function for GO annotation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Do not transfer oncogenic mutant phenotypes to wild-type HRAS GO BP
terms by default.
- term:
id: GO:0043495
label: protein-membrane adaptor activity
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
HRAS is a lipid-modified small GTPase, not a protein-membrane adaptor.
action: REMOVE
reason: >-
HRAS membrane association is mediated by its own CAAX processing and
palmitoylation; that trafficking mechanism should not be represented as
protein-membrane adaptor activity.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Membrane targeting by CAAX prenylation and palmitoylation | HRAS uses
CAAX farnesylation, AAX cleavage, carboxymethylation, and reversible
palmitoylation as the core membrane-targeting logic.
- term:
id: GO:0060612
label: adipose tissue development
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
Adipose tissue development is too distal to represent the core function
of HRAS.
action: MARK_AS_OVER_ANNOTATED
reason: >-
This automated IEA row appears to over-project broad Ras-family or
pathway-derived developmental biology onto HRAS; direct evidence that
wild-type HRAS is a proximal regulator of adipose tissue development was
not identified in this review.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
2) **Avoid overly broad BP terms** (e.g., generic “cancer,”
“development,” “cell cycle,” “transcriptional regulation,”
“immune/inflammatory processes”) unless there is direct mechanistic
evidence placing *wild-type HRAS* as a proximal regulator rather than a
downstream correlate. Large interactome datasets include false positives
and many context-specific interactors.
- term:
id: GO:0046579
label: positive regulation of Ras protein signal transduction
evidence_type: NAS
original_reference_id: PMID:35831509
review:
summary: >-
HRAS participates in positive feedback loops within RAS-ERK signaling
(e.g., via SHOC2-MRAS-PP1C-mediated RAF dephosphorylation), but the cited
study focuses on the MRAS-containing holophosphatase rather than HRAS
directly.
action: KEEP_AS_NON_CORE
reason: >-
Positive regulation of Ras signal transduction is biologically reasonable
for HRAS (Ras-GTP can feedback-activate SOS), but the supporting reference
(PMID:35831509) characterizes the SHOC2-MRAS-PP1C complex; the annotation
is plausible at the pathway level but not a direct, core HRAS molecular
function. The core process is captured by GO:0007265.
supported_by:
- reference_id: PMID:35831509
supporting_text: >-
Structure-function analysis of the SHOC2-MRAS-PP1C holophosphatase
complex.
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
A key GO-relevant principle is that **bona fide Ras effectors must bind
RAS in a nucleotide-dependent manner (GTP-bound)**
- term:
id: GO:0006357
label: regulation of transcription by RNA polymerase II
evidence_type: IDA
original_reference_id: PMID:23027131
review:
summary: >-
This transcription annotation is based on a downstream oncogenic Ras model
and should not be treated as a direct HRAS function.
action: MARK_AS_OVER_ANNOTATED
reason: >-
PMID:23027131 describes oncogenic Ras regulation of Wnt4/miR-24 and
motility phenotypes, which are distal transcriptional consequences rather
than a direct normal molecular function of HRAS.
supported_by:
- reference_id: PMID:23027131
supporting_text: >-
By using a model of malignant transformation induced by Ras, we
identified Wnt4 as an early target of Ras oncogenic signaling.
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
2) **Avoid overly broad BP terms** (e.g., generic “cancer,”
“development,” “cell cycle,” “transcriptional regulation,”
“immune/inflammatory processes”) unless there is direct mechanistic
evidence placing *wild-type HRAS* as a proximal regulator rather than a
downstream correlate. Large interactome datasets include false positives
and many context-specific interactors.
- term:
id: GO:0007265
label: Ras protein signal transduction
evidence_type: IDA
original_reference_id: PMID:23027131
review:
summary: >-
The paper uses oncogenic Ras, but the annotation to Ras protein signal
transduction is consistent with HRAS biology.
action: ACCEPT
reason: >-
HRAS's proximal role in Ras protein signal transduction is core, even
though distal phenotypes from this particular study require caution.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Ras protein signal transduction | HRAS is one of the canonical RAS
proteins acting upstream of multiple effector pathways in Ras signal
transduction.
- term:
id: GO:0042127
label: regulation of cell population proliferation
evidence_type: IDA
original_reference_id: PMID:9054499
review:
summary: >-
Oncogenic Ras regulates proliferation/senescence outcomes, but this is
not a core wild-type HRAS function.
action: KEEP_AS_NON_CORE
reason: >-
The supporting paper uses oncogenic Ras and shows growth arrest/senescence
in primary cells, making this a context-dependent downstream outcome.
supported_by:
- reference_id: PMID:9054499
supporting_text: >-
Here we show that expression of oncogenic ras in primary human or rodent
cells results in a permanent G1 arrest.
- term:
id: GO:0000165
label: MAPK cascade
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5673001
review:
summary: >-
HRAS signals through the RAF-MEK-ERK MAPK cascade.
action: ACCEPT
reason: >-
MAPK signaling is a proximal canonical output of HRAS-GTP effector
binding.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
RAS proteins sit at the apex of the **RAF–MEK–ERK (MAPK) cascade**, and
Ras-effector binding directly routes signals into MAPK outputs.
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: IDA
original_reference_id: GO_REF:0000052
review:
summary: >-
Nucleoplasmic localization is not characteristic of the membrane-anchored
p21 H-Ras and likely derives from high-throughput localization data or the
minor p19 isoform.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The mature, lipidated H-Ras is targeted to plasma membrane and
Golgi/endomembranes; nucleoplasmic localization is reported mainly for the
alternatively spliced p19 (H-RasIDX), so a nucleoplasm CC term
over-projects onto the canonical gene product.
supported_by:
- reference_id: PMID:14500341
supporting_text: >-
Both the endogenous and the transiently expressed p19 protein are
detected in COS-1 and HeLa cells and show nuclear diffuse and speckled
patterns as well as cytoplasmic localization.
- term:
id: GO:0005829
label: cytosol
evidence_type: IDA
original_reference_id: GO_REF:0000052
review:
summary: >-
A cytosolic pool of HRAS exists transiently before and during membrane
targeting.
action: KEEP_AS_NON_CORE
reason: >-
Newly synthesized HRAS and the p19 isoform can be cytosolic, so the
annotation is acceptable, but the functionally important locations are the
plasma membrane and Golgi/endomembranes.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
prenylation drives nascent Ras proteins to **ER and Golgi** before
subsequent trafficking to the plasma membrane
- term:
id: GO:0043410
label: positive regulation of MAPK cascade
evidence_type: IDA
original_reference_id: PMID:23027131
review:
summary: >-
HRAS positively regulates MAPK cascade signaling.
action: ACCEPT
reason: >-
Positive regulation of MAPK cascade is a proximal canonical Ras output,
although PMID:23027131 itself is an oncogenic Ras model and distal
phenotypes should be reviewed cautiously.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
“Ras protein signal transduction” and “positive regulation of MAPK
cascade” are generally **core** for HRAS, but very specific outcome
terms (e.g., “cell cycle progression” as a default) should be
restricted to contexts with strong, direct, wild-type evidence.
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Positive regulation of MAPK cascade | RAS signaling is funneled strongly
into RAF-MEK-ERK, and HRAS contributes to ERK output and MAPK signaling
dynamics.
- term:
id: GO:0003924
label: GTPase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9649736
review:
summary: >-
HRAS has intrinsic GTPase activity.
action: ACCEPT
reason: >-
GTP hydrolysis is the core molecular switch activity of HRAS.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Intrinsic GTPase activity is **accelerated by GAPs**, while **GEFs
promote GDP→GTP exchange**.
- term:
id: GO:0160185
label: phospholipase C activator activity
evidence_type: IDA
original_reference_id: PMID:11022048
review:
summary: >-
HRAS can directly activate PLCepsilon in a GTP-dependent manner.
action: KEEP_AS_NON_CORE
reason: >-
This is a well-supported specific effector activity, but it represents
one downstream branch rather than the core HRAS molecular function.
supported_by:
- reference_id: PMID:11022048
supporting_text: >-
The Ras-associating domain of PLCepsilon specifically binds to the
GTP-bound forms of Ha-Ras and Rap1A.
- reference_id: PMID:11022048
supporting_text: >-
These results indicate that Ras directly regulates phosphoinositide
breakdown through membrane targeting of PLCepsilon.
- term:
id: GO:0098696
label: regulation of neurotransmitter receptor localization to postsynaptic specialization membrane
evidence_type: IDA
original_reference_id: PMID:12202034
review:
summary: >-
Ras relays NMDA-R/CaMKII signaling to drive synaptic delivery of AMPA
receptors during long-term potentiation, a neuron-specific downstream
output of Ras signaling.
action: KEEP_AS_NON_CORE
reason: >-
This is a well-supported but cell-type-specific (postsynaptic) function
that is a distal consequence of Ras-MAPK signaling rather than the core
molecular switch function of HRAS.
supported_by:
- reference_id: PMID:12202034
supporting_text: >-
Ras relays the NMDA-R and CaMKII signaling that drives synaptic delivery
of AMPA-Rs during long-term potentiation.
- term:
id: GO:0098696
label: regulation of neurotransmitter receptor localization to postsynaptic specialization membrane
evidence_type: IMP
original_reference_id: PMID:12202034
review:
summary: >-
Perturbation of Ras alters synaptic AMPA receptor delivery during LTP,
supporting a non-core synaptic-plasticity role.
action: KEEP_AS_NON_CORE
reason: >-
The IMP evidence supports a neuron-specific role downstream of Ras-MAPK
signaling; it is a legitimate process annotation but non-core relative to
the GTPase/signal-transduction function of HRAS.
supported_by:
- reference_id: PMID:12202034
supporting_text: >-
Ras relays the NMDA-R and CaMKII signaling that drives synaptic delivery
of AMPA-Rs during long-term potentiation.
- term:
id: GO:0098978
label: glutamatergic synapse
evidence_type: IDA
original_reference_id: PMID:12202034
review:
summary: >-
HRAS functions in postsynaptic signaling at glutamatergic synapses during
synaptic plasticity.
action: KEEP_AS_NON_CORE
reason: >-
The glutamatergic synapse location reflects a neuron-specific context for
Ras signaling and is a valid but non-core localization relative to plasma
membrane and Golgi.
supported_by:
- reference_id: PMID:12202034
supporting_text: >-
we examine the small GTPases Ras and Rap in the postsynaptic signaling
underlying synaptic plasticity
- term:
id: GO:0098978
label: glutamatergic synapse
evidence_type: IMP
original_reference_id: PMID:12202034
review:
summary: >-
Manipulation of Ras at glutamatergic synapses alters AMPA receptor
trafficking during plasticity.
action: KEEP_AS_NON_CORE
reason: >-
This synapse-localization annotation is supported but represents a
neuron-specific context rather than a core HRAS localization.
supported_by:
- reference_id: PMID:12202034
supporting_text: >-
we examine the small GTPases Ras and Rap in the postsynaptic signaling
underlying synaptic plasticity
- term:
id: GO:0032956
label: regulation of actin cytoskeleton organization
evidence_type: IDA
original_reference_id: PMID:23027131
review:
summary: >-
This is a downstream motility phenotype from an oncogenic Ras model, not a
core HRAS function.
action: KEEP_AS_NON_CORE
reason: >-
The annotation is biologically plausible as a distal Ras signaling output,
but it should be marked non-core because the evidence is from malignant
transformation/oncogenic Ras context.
supported_by:
- reference_id: PMID:23027131
supporting_text: >-
Wnt4 interferes with Ras-induced actin cytoskeleton reorganization
through non-canonical pathways, by altering the balance between the
activation of different Rho-family small guanosine triphosphatases
(GTPases).
- term:
id: GO:0051726
label: regulation of cell cycle
evidence_type: IDA
original_reference_id: PMID:9054499
review:
summary: >-
Cell-cycle arrest is a downstream outcome of oncogenic Ras-induced
senescence.
action: KEEP_AS_NON_CORE
reason: >-
This annotation is supported as a context-specific oncogenic Ras outcome
but should not be represented as the core normal function of HRAS.
supported_by:
- reference_id: PMID:9054499
supporting_text: >-
The arrest induced by ras is accompanied by accumulation of p53 and p16,
and is phenotypically indistinguishable from cellular senescence.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9647994
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6802834
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6802908
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6802918
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6802922
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6802924
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6802925
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6802926
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6802937
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6802941
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6802942
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6802943
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6803233
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6803234
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6803240
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8936731
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9651280
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0000139
label: Golgi membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9647980
review:
summary: >-
HRAS transits and cycles through Golgi membranes during palmitoylation-dependent trafficking, consistent with this Reactome location.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
palmitoylation is **reversible/dynamic**, supporting HRAS cycling between Golgi and plasma membrane
- term:
id: GO:0000139
label: Golgi membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9647982
review:
summary: >-
HRAS transits and cycles through Golgi membranes during palmitoylation-dependent trafficking, consistent with this Reactome location.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
palmitoylation is **reversible/dynamic**, supporting HRAS cycling between Golgi and plasma membrane
- term:
id: GO:0005789
label: endoplasmic reticulum membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9647978
review:
summary: >-
Newly prenylated HRAS is processed at the ER membrane (RCE1/ICMT) before onward trafficking, consistent with this Reactome location.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
prenylation drives nascent Ras proteins to **ER and Golgi** before subsequent trafficking to the plasma membrane
- term:
id: GO:0005789
label: endoplasmic reticulum membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9647999
review:
summary: >-
Newly prenylated HRAS is processed at the ER membrane (RCE1/ICMT) before onward trafficking, consistent with this Reactome location.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
prenylation drives nascent Ras proteins to **ER and Golgi** before subsequent trafficking to the plasma membrane
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-1168636
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-1225951
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-1225957
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-1250383
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-1306972
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-1433471
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-170986
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-177938
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-177945
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-186834
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-210977
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-2179407
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-2424477
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-392054
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5218845
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5621573
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5624486
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5624492
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5624494
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5637806
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5637808
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5654392
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5654402
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5654413
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5654426
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5654600
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5654618
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5654647
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5654663
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5655241
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5655277
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5655326
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5655347
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5658231
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5658435
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5672950
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5672965
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5672966
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5672969
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5672972
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5672973
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5672978
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5672980
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5674018
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5674022
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5675417
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5675431
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5675433
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6802837
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8851827
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8851877
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8851899
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8941613
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8941618
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8941623
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8941628
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8981353
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8981355
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9607304
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9632906
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9632918
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9634418
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9647980
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9649733
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9649735
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9649736
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9653108
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9656209
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9656211
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9656212
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9656213
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9656214
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9656215
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9657599
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9657603
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9657606
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9657608
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9658253
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9660557
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9664991
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9665009
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9665404
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9665408
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9665700
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9665707
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9670436
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9672163
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9672170
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9695853
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9703441
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005789
label: endoplasmic reticulum membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9647977
review:
summary: >-
Newly prenylated HRAS is processed at the ER membrane (RCE1/ICMT) before onward trafficking, consistent with this Reactome location.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
prenylation drives nascent Ras proteins to **ER and Golgi** before subsequent trafficking to the plasma membrane
- term:
id: GO:0005789
label: endoplasmic reticulum membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9647982
review:
summary: >-
Newly prenylated HRAS is processed at the ER membrane (RCE1/ICMT) before onward trafficking, consistent with this Reactome location.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
prenylation drives nascent Ras proteins to **ER and Golgi** before subsequent trafficking to the plasma membrane
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9647978
review:
summary: >-
A cytosolic pool of HRAS exists prior to and during membrane targeting, consistent with this Reactome reaction location.
action: KEEP_AS_NON_CORE
reason: >-
This Reactome TAS row places a HRAS reaction in the cytosol, consistent
with the soluble/pre-membrane pool; the location is valid but non-core
relative to the plasma membrane and Golgi/endomembranes.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
prenylation drives nascent Ras proteins to **ER and Golgi** before subsequent trafficking to the plasma membrane
- term:
id: GO:0090314
label: positive regulation of protein targeting to membrane
evidence_type: IMP
original_reference_id: PMID:11022048
review:
summary: >-
GTP-bound HRAS recruits PLCepsilon to the membrane, promoting membrane
targeting of this effector.
action: KEEP_AS_NON_CORE
reason: >-
This is a specific, well-supported consequence of HRAS-GTP binding the
PLCepsilon RA domain and recruiting it to membranes, but it is one
effector branch rather than the core HRAS molecular function.
supported_by:
- reference_id: PMID:11022048
supporting_text: >-
These results indicate that Ras directly regulates phosphoinositide
breakdown through membrane targeting of PLCepsilon.
- term:
id: GO:0071480
label: cellular response to gamma radiation
evidence_type: IDA
original_reference_id: PMID:16213212
review:
summary: >-
The cited reference concerns RPL26/nucleolin control of p53 translation
after irradiation and does not establish a direct, proximal HRAS role in
the gamma-radiation response.
action: MARK_AS_OVER_ANNOTATED
reason: >-
PMID:16213212 focuses on p53 translational induction by RPL26 and
nucleolin after DNA damage; there is no direct evidence here that
wild-type HRAS is a proximal mediator of the cellular response to gamma
radiation, so this is a distal/indirect over-annotation.
supported_by:
- reference_id: PMID:16213212
supporting_text: >-
Ribosomal protein L26 (RPL26) and nucleolin were found to bind to the 5'
untranslated region (UTR) of p53 mRNA and to control p53 translation and
induction after DNA damage.
- term:
id: GO:0003924
label: GTPase activity
evidence_type: IMP
original_reference_id: PMID:9230043
review:
summary: >-
HRAS has intrinsic GTPase activity, a core property of this small GTPase
switch.
action: ACCEPT
reason: >-
Intrinsic GTP hydrolysis is the defining catalytic function of HRAS and is
well established structurally and biochemically; this is a core molecular
function.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Intrinsic GTPase activity is **accelerated by GAPs**, while **GEFs
promote GDP→GTP exchange**.
- term:
id: GO:0005525
label: GTP binding
evidence_type: IMP
original_reference_id: PMID:9230043
review:
summary: >-
HRAS binds GTP with high affinity as part of its nucleotide-dependent
switch.
action: ACCEPT
reason: >-
GTP binding is a core molecular function of HRAS, well supported by
structural studies of the GTP-bound conformation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS is a canonical RAS small GTPase that binds GDP/GTP with high
affinity and functions as a nucleotide-dependent molecular switch.
- term:
id: GO:0019003
label: GDP binding
evidence_type: IMP
original_reference_id: PMID:8142349
review:
summary: >-
HRAS binds GDP in its inactive state, completing the GDP/GTP switch cycle.
action: ACCEPT
reason: >-
GDP binding (the OFF state of the switch) is a core molecular function of
HRAS, demonstrated by NMR structural studies of the GDP-bound form.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
RAS proteins (including HRAS) are **GTP hydrolases** that function as
**binary molecular switches**: GDP-bound is “OFF,” GTP-bound is “ON,”
- term:
id: GO:0019003
label: GDP binding
evidence_type: IMP
original_reference_id: PMID:9230043
review:
summary: >-
HRAS binds GDP in its inactive state, completing the GDP/GTP switch cycle.
action: ACCEPT
reason: >-
GDP binding is a core molecular function of HRAS; this duplicate IMP
annotation is consistent with the GDP/GTP switch model.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
RAS proteins (including HRAS) are **GTP hydrolases** that function as
**binary molecular switches**: GDP-bound is “OFF,” GTP-bound is “ON,”
- term:
id: GO:0003924
label: GTPase activity
evidence_type: IDA
original_reference_id: PMID:9178006
review:
summary: >-
HRAS has intrinsic GTPase activity (inferred from the conserved let-60 Ras
activation study).
action: ACCEPT
reason: >-
GTP hydrolysis is the core catalytic molecular function of HRAS and is
conserved across the Ras family.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Intrinsic GTPase activity is **accelerated by GAPs**, while **GEFs
promote GDP→GTP exchange**.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: IDA
original_reference_id: PMID:17724343
review:
summary: >-
HRAS localizes to the plasma membrane, where its signaling is spatially
regulated (e.g., by RKTG).
action: ACCEPT
reason: >-
Direct evidence supports plasma membrane localization, the principal
signaling location of mature, lipidated HRAS.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid
modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-4093331
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-4093339
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6802914
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6802915
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6802916
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6802919
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6802921
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6803230
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8936676
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-NUL-9617449
review:
summary: >-
The plasma membrane is the principal signaling location of mature, lipidated HRAS, consistent with these Reactome RAS-pathway reactions.
action: ACCEPT
reason: >-
This is a bulk Reactome TAS localization row placing HRAS in a membrane
compartment consistent with its established lipidation-dependent
trafficking and signaling; the location is correct and accepted.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid modifications enabling stable plasma membrane localization.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:11598133
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with the GEF CNrasGEF (Nedd4 regulation).
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:10608844
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with RA-GEF, a Rap1A/Ras-associating GEF.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0010629
label: negative regulation of gene expression
evidence_type: IDA
original_reference_id: PMID:23027131
review:
summary: >-
Negative regulation of gene expression is a distal transcriptional output
from an oncogenic Ras transformation model (Wnt4/miR-24 axis).
action: MARK_AS_OVER_ANNOTATED
reason: >-
PMID:23027131 uses oncogenic Ras-induced malignant transformation;
transcriptional/gene-expression changes are distal consequences rather
than a proximal, direct molecular function of wild-type HRAS.
supported_by:
- reference_id: PMID:23027131
supporting_text: >-
By using a model of malignant transformation induced by Ras, we
identified Wnt4 as an early target of Ras oncogenic signaling.
- term:
id: GO:0030335
label: positive regulation of cell migration
evidence_type: IDA
original_reference_id: PMID:23027131
review:
summary: >-
Promotion of cell migration is a downstream motility phenotype of
oncogenic Ras signaling.
action: KEEP_AS_NON_CORE
reason: >-
Cell migration is a plausible distal Ras output but is documented here in
an oncogenic transformation context; it is non-core relative to the HRAS
switch function.
supported_by:
- reference_id: PMID:23027131
supporting_text: >-
Wnt4 inhibits cell motility induced by oncogenic Ras.
- term:
id: GO:0045944
label: positive regulation of transcription by RNA polymerase II
evidence_type: IDA
original_reference_id: PMID:23027131
review:
summary: >-
Positive transcriptional regulation is a distal output from an oncogenic
Ras transformation model.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Transcriptional activation in this study is a downstream consequence of
oncogenic Ras signaling, not a direct, proximal HRAS molecular function.
supported_by:
- reference_id: PMID:23027131
supporting_text: >-
By using a model of malignant transformation induced by Ras, we
identified Wnt4 as an early target of Ras oncogenic signaling.
- term:
id: GO:0090303
label: positive regulation of wound healing
evidence_type: IDA
original_reference_id: PMID:23027131
review:
summary: >-
Wound-healing regulation is a distal phenotype inferred from oncogenic
Ras-driven motility assays.
action: MARK_AS_OVER_ANNOTATED
reason: >-
This is a far-downstream phenotypic readout of oncogenic Ras-induced cell
motility rather than a proximal, mechanistically supported function of
wild-type HRAS.
supported_by:
- reference_id: PMID:23027131
supporting_text: >-
Wnt4 inhibits cell motility induced by oncogenic Ras.
- term:
id: GO:1900029
label: positive regulation of ruffle assembly
evidence_type: IDA
original_reference_id: PMID:23027131
review:
summary: >-
Ruffle assembly is a cytoskeletal output of oncogenic Ras signaling via
Rho-family GTPases.
action: KEEP_AS_NON_CORE
reason: >-
Membrane ruffling downstream of Ras-driven actin remodeling is plausible
but indirect (mediated by Rho-family GTPases) and documented in an
oncogenic context, so it is non-core.
supported_by:
- reference_id: PMID:23027131
supporting_text: >-
Wnt4 interferes with Ras-induced actin cytoskeleton reorganization
through non-canonical pathways, by altering the balance between the
activation of different Rho-family small guanosine triphosphatases
(GTPases).
- term:
id: GO:2000630
label: positive regulation of miRNA metabolic process
evidence_type: IDA
original_reference_id: PMID:23027131
review:
summary: >-
Regulation of miR-24 is a distal transcriptional/RNA output from an
oncogenic Ras transformation model.
action: MARK_AS_OVER_ANNOTATED
reason: >-
miRNA metabolic regulation here is a downstream consequence of oncogenic
Ras signaling rather than a direct, proximal HRAS molecular function.
supported_by:
- reference_id: PMID:23027131
supporting_text: >-
By using a model of malignant transformation induced by Ras, we
identified Wnt4 as an early target of Ras oncogenic signaling.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:10369681
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with a partner reported in an Aiolos/Bcl-2 T-cell study.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0045944
label: positive regulation of transcription by RNA polymerase II
evidence_type: IDA
original_reference_id: PMID:22065586
review:
summary: >-
Oncogenic Ras induces DR5 transcription via ERK/JNK and downstream
transcription factors (CHOP, Elk1, c-Jun), a distal transcriptional
output.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Transcriptional regulation of DR5 here is several steps downstream of
oncogenic Ras signaling and mediated by ERK/JNK and multiple
transcription factors, so it is not a proximal, direct HRAS function.
supported_by:
- reference_id: PMID:22065586
supporting_text: >-
Ras induces DR5 expression through co-activation of ERK/RSK and JNK
signaling pathways and subsequent cooperative effects among the
transcriptional factors CHOP, Elk1, and c-Jun to enhance DR5 gene
transcription.
- term:
id: GO:0046330
label: positive regulation of JNK cascade
evidence_type: IDA
original_reference_id: PMID:22065586
review:
summary: >-
Oncogenic Ras can co-activate the JNK signaling cascade.
action: KEEP_AS_NON_CORE
reason: >-
JNK activation is a recognized but secondary/context-dependent Ras output
(relative to the canonical RAF-MEK-ERK cascade) and is documented here in
an oncogenic context, so it is non-core.
supported_by:
- reference_id: PMID:22065586
supporting_text: >-
Ras induces DR5 expression through co-activation of ERK/RSK and JNK
signaling pathways
- term:
id: GO:0070374
label: positive regulation of ERK1 and ERK2 cascade
evidence_type: IDA
original_reference_id: PMID:22065586
review:
summary: >-
HRAS positively regulates the ERK1/ERK2 cascade, a core proximal Ras
output.
action: ACCEPT
reason: >-
Activation of the ERK1/2 (RAF-MEK-ERK) cascade is the canonical, proximal
signaling output of HRAS-GTP and is a core process annotation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
RAS signaling is funneled strongly into RAF-MEK-ERK, and HRAS
contributes to ERK output and MAPK signaling dynamics.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:14500341
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with a reported physical interaction partner.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005525
label: GTP binding
evidence_type: IDA
original_reference_id: PMID:14500341
review:
summary: >-
HRAS binds GTP, a core molecular function of this small GTPase.
action: ACCEPT
reason: >-
GTP binding is a core, well-established molecular function of HRAS as a
nucleotide-dependent switch.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS is a canonical RAS small GTPase that binds GDP/GTP with high
affinity and functions as a nucleotide-dependent molecular switch.
- term:
id: GO:0005794
label: Golgi apparatus
evidence_type: IDA
original_reference_id: PMID:14500341
review:
summary: >-
The canonical p21 H-Ras localizes to Golgi membranes during
lipidation-dependent trafficking.
action: ACCEPT
reason: >-
Golgi localization is consistent with HRAS palmitoylation cycles and
ER/Golgi processing; this is a valid localization annotation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
palmitoylation is **reversible/dynamic**, supporting HRAS cycling
between Golgi and plasma membrane
- term:
id: GO:0005886
label: plasma membrane
evidence_type: IDA
original_reference_id: PMID:14500341
review:
summary: >-
The canonical p21 H-Ras localizes to the plasma membrane.
action: ACCEPT
reason: >-
Plasma membrane localization is the principal signaling location of mature
lipidated HRAS.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid
modifications enabling stable plasma membrane localization.
- term:
id: GO:0005794
label: Golgi apparatus
evidence_type: IDA
original_reference_id: PMID:21968647
review:
summary: >-
HRAS localizes to and signals from the Golgi apparatus, where PAQR10/PAQR11
promote its Golgi localization and ERK activation.
action: ACCEPT
reason: >-
Golgi localization and Golgi-based Ras signaling are directly supported;
this is a valid HRAS localization annotation.
supported_by:
- reference_id: PMID:21968647
supporting_text: >-
Overexpression of PAQR10/PAQR11 markedly elevates Golgi localization of
HRas, NRas and KRas4A, but not KRas4B.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: IDA
original_reference_id: PMID:21968647
review:
summary: >-
HRAS localizes to the plasma membrane in addition to the Golgi pool.
action: ACCEPT
reason: >-
Plasma membrane localization is the principal signaling location of HRAS
and is consistent with this study of Golgi vs PM Ras pools.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid
modifications enabling stable plasma membrane localization.
- term:
id: GO:0090398
label: cellular senescence
evidence_type: IDA
original_reference_id: PMID:9054499
review:
summary: >-
Oncogenic Ras induces premature senescence in primary cells, a
context-dependent outcome.
action: KEEP_AS_NON_CORE
reason: >-
The senescence evidence comes from oncogenic Ras overexpression in primary
cells and should not be treated as a core function of wild-type HRAS.
supported_by:
- reference_id: PMID:9054499
supporting_text: >-
Here we show that expression of oncogenic ras in primary human or rodent
cells results in a permanent G1 arrest.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:11980706
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with a partner reported in an Arl2-GTP/PDEdelta study.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0050679
label: positive regulation of epithelial cell proliferation
evidence_type: IMP
original_reference_id: PMID:20154697
review:
summary: >-
Activation of Ras (via DAB2IP/RasGAP loss) promotes prostate epithelial
proliferation and metastasis, a downstream cancer-context phenotype.
action: KEEP_AS_NON_CORE
reason: >-
Epithelial proliferation here arises from loss of the RasGAP DAB2IP in a
metastatic prostate cancer model; it is a context-dependent downstream
output rather than a core wild-type HRAS function.
supported_by:
- reference_id: PMID:20154697
supporting_text: >-
loss of the Ras GTPase-activating protein (RasGAP) gene DAB2IP induces
metastatic prostate cancer in an orthotopic mouse tumor model.
- term:
id: GO:0008284
label: positive regulation of cell population proliferation
evidence_type: IDA
original_reference_id: PMID:9765203
review:
summary: >-
Sustained Ras/MEK-MAPK signaling can promote proliferation, a
context-dependent downstream outcome.
action: KEEP_AS_NON_CORE
reason: >-
Proliferation is a canonical but context-dependent Ras output; the cited
study links constitutive MEK/MAPK signaling to proliferation/senescence
depending on context, so it is non-core.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
RAS-ERK signaling dynamics can bias proliferation versus differentiation
outputs, but these outcomes depend strongly on cell type and signaling
kinetics.
- term:
id: GO:0043410
label: positive regulation of MAPK cascade
evidence_type: IDA
original_reference_id: PMID:9765203
review:
summary: >-
HRAS positively regulates the MAPK cascade, a core proximal Ras output.
action: ACCEPT
reason: >-
Positive regulation of the MAPK (RAF-MEK-ERK) cascade is the canonical
proximal signaling output of HRAS-GTP and is a core process.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
RAS proteins sit at the apex of the **RAF–MEK–ERK (MAPK) cascade**, and
Ras-effector binding directly routes signals into MAPK outputs.
- term:
id: GO:0005525
label: GTP binding
evidence_type: IDA
original_reference_id: PMID:17260967
review:
summary: >-
HRAS binds GTP; the cited reference uses HRAS as a reference Ras-like GTP
binding protein when characterizing the LRRK2 ROC domain.
action: ACCEPT
reason: >-
GTP binding is a core, well-established molecular function of HRAS,
regardless of the comparative context of the citing paper.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS is a canonical RAS small GTPase that binds GDP/GTP with high
affinity and functions as a nucleotide-dependent molecular switch.
- term:
id: GO:0008285
label: negative regulation of cell population proliferation
evidence_type: IDA
original_reference_id: PMID:9054499
review:
summary: >-
Oncogenic Ras can negatively regulate proliferation by triggering
premature senescence/G1 arrest in primary cells.
action: KEEP_AS_NON_CORE
reason: >-
This anti-proliferative (senescence) output is an oncogenic-Ras,
context-dependent phenotype in primary cells and is not a core wild-type
HRAS function.
supported_by:
- reference_id: PMID:9054499
supporting_text: >-
The arrest induced by ras is accompanied by accumulation of p53 and p16,
and is phenotypically indistinguishable from cellular senescence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:11022048
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with the effector PLCepsilon (Ras-associating domain).
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:2122974
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with GTPase-activating protein (GAP) modulating Ras nucleotide state.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:9219684
review:
summary: >-
This IPI annotation records a physical interaction of HRAS with RasGAP (Ras-RasGAP complex structure).
action: MARK_AS_OVER_ANNOTATED
reason: >-
The bare 'protein binding' (GO:0005515) term is uninformative for a hub
GTPase like HRAS; where the interaction reflects a bona fide,
nucleotide-state-dependent effector or regulator engagement it would be
better captured by a specific binding term, and many large-scale
interactome hits lack mechanistic validation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
Broad protein-binding annotation adds little value when specific effector
binding terms are available with direct evidence.
- term:
id: GO:0007165
label: signal transduction
evidence_type: NAS
original_reference_id: PMID:8607982
review:
summary: >-
HRAS transmits signals from growth factor receptors into downstream kinase
cascades; the more specific term is Ras protein signal transduction.
action: MODIFY
reason: >-
The broad signal transduction term should be replaced with the specific
Ras protein signal transduction term, which the cited review explicitly
describes.
proposed_replacement_terms:
- id: GO:0007265
label: Ras protein signal transduction
supported_by:
- reference_id: PMID:8607982
supporting_text: >-
The ras p21 protooncogene products, H-ras, K-ras, and N-ras, transmit
signals from growth factor receptors to a cascade of protein kinases
that begins with the Raf protooncogene product.
- term:
id: GO:0009887
label: animal organ morphogenesis
evidence_type: TAS
original_reference_id: PMID:10848592
review:
summary: >-
Organ morphogenesis is a distal developmental phenotype inferred from
Ras/Ral involvement in myoblast chemotaxis and muscle development.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The cited study addresses Ras/Ral control of growth-factor-driven myoblast
chemotaxis; organ morphogenesis is a far-downstream developmental outcome,
not a proximal, direct HRAS molecular function.
supported_by:
- reference_id: PMID:10848592
supporting_text: >-
Expression of a dominant-negative mutant of Ras inhibited chemotaxis of
C2C12 myoblasts in response to basic fibroblast growth factor (bFGF),
hepatocyte growth factor (HGF), and insulin-like growth factor 1
(IGF-1), key regulators of limb muscle development and skeletal muscle
regeneration.
- term:
id: GO:0005737
label: cytoplasm
evidence_type: TAS
original_reference_id: PMID:10842192
review:
summary: >-
A generic cytoplasm localization, consistent with the soluble/pre-membrane
pool of HRAS.
action: KEEP_AS_NON_CORE
reason: >-
Cytoplasmic localization is plausible for a fraction of HRAS, but the
functionally meaningful locations are the plasma membrane and
Golgi/endomembranes; this generic term is non-core.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
prenylation drives nascent Ras proteins to **ER and Golgi** before
subsequent trafficking to the plasma membrane
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: PMID:9020890
review:
summary: >-
Ras localizes to the plasma membrane in platelets, consistent with its
lipidation-dependent membrane targeting.
action: ACCEPT
reason: >-
Plasma membrane localization is the principal signaling location of mature
HRAS and is directly observed here.
supported_by:
- reference_id: PMID:9020890
supporting_text: >-
Immunofluorescence studies indicated that Ras was present in a
peripheral rim pattern in fixed, permeabilized platelets, suggesting an
intracellular, plasma membrane location.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: PMID:9880516
review:
summary: >-
Lipidated H-Ras localizes to the plasma membrane; palmitoylation can
target H-Ras to the membrane even without farnesylation.
action: ACCEPT
reason: >-
Plasma membrane localization driven by H-Ras lipid modifications is a core
localization annotation.
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
HRAS membrane association is essential for signaling, with lipid
modifications enabling stable plasma membrane localization.
- term:
id: GO:0006935
label: chemotaxis
evidence_type: TAS
original_reference_id: PMID:10848592
review:
summary: >-
Ras (with Ral) contributes to growth-factor-induced chemotactic migration
of skeletal myoblasts, a cell-type-specific downstream output.
action: KEEP_AS_NON_CORE
reason: >-
Chemotaxis is a plausible distal output of Ras signaling but is
context-specific (myoblasts, via a Ras-Ral branch independent of MEK/PI3K
here), so it is non-core relative to the GTPase switch function.
supported_by:
- reference_id: PMID:10848592
supporting_text: >-
Here, we demonstrate that Ras is involved also in the chemotactic
response of skeletal myoblasts.
- term:
id: GO:0007166
label: cell surface receptor signaling pathway
evidence_type: TAS
original_reference_id: PMID:9020890
review:
summary: >-
HRAS is activated downstream of cell-surface receptors (e.g., thrombin and
thromboxane A2 receptors) in platelets.
action: KEEP_AS_NON_CORE
reason: >-
Acting downstream of cell-surface receptors is consistent with HRAS
biology, but this broad process is a context for, rather than a more
specific statement of, the core Ras protein signal transduction function.
supported_by:
- reference_id: PMID:9020890
supporting_text: >-
Activation of platelets with the thrombin receptor peptide42-50, the
prostaglandin H2/thromboxane A2 mimetic U46619 or phorbol 12-myristate
13-acetate induced a rapid increase in GTP-bound, activated Ras.
references:
- id: file:human/HRAS/HRAS-deep-research-falcon.md
title: Falcon deep research synthesis for human HRAS
findings:
- statement: >-
HRAS is a small GTPase molecular switch whose core GO annotations should
prioritize GTP binding, GTPase activity, Ras protein signal transduction,
positive regulation of MAPK cascade, and plasma membrane/Golgi membrane
localization, while distal oncogenic mutant phenotypes should be curated
conservatively.
supporting_text: >-
“Ras protein signal transduction” and “positive regulation of MAPK
cascade” are generally **core** for HRAS, but very specific outcome terms
(e.g., “cell cycle progression” as a default) should be restricted to
contexts with strong, direct, wild-type evidence.
- id: GO_REF:0000002
title: 'TODO: Fetch title'
findings: []
- id: GO_REF:0000003
title: 'TODO: Fetch title'
findings: []
- id: GO_REF:0000033
title: 'TODO: Fetch title'
findings: []
- id: GO_REF:0000044
title: 'TODO: Fetch title'
findings: []
- id: GO_REF:0000052
title: 'TODO: Fetch title'
findings: []
- id: GO_REF:0000107
title: 'TODO: Fetch title'
findings: []
- id: GO_REF:0000117
title: 'TODO: Fetch title'
findings: []
- id: GO_REF:0000120
title: 'TODO: Fetch title'
findings: []
- id: PMID:10369681
title: Aiolos transcription factor controls cell death in T cells by regulating Bcl-2 expression and its cellular localization.
findings: []
- id: PMID:10608844
title: RA-GEF, a novel Rap1A guanine nucleotide exchange factor containing a Ras/Rap1A-associating domain, is conserved
between nematode and humans.
findings: []
- id: PMID:10842192
title: Increased oxidative stress with gene alteration in urinary bladder urothelium after the Chernobyl accident.
findings: []
- id: PMID:10848592
title: Involvement of Ras and Ral in chemotactic migration of skeletal myoblasts.
findings: []
- id: PMID:11022048
title: Regulation of a novel human phospholipase C, PLCepsilon, through membrane targeting by Ras.
findings: []
- id: PMID:11335720
title: Prenylated Rab acceptor protein is a receptor for prenylated small GTPases.
findings: []
- id: PMID:11598133
title: Nedd4 regulates ubiquitination and stability of the guanine-nucleotide exchange factor CNrasGEF.
findings: []
- id: PMID:11857081
title: The putative tumor suppressor RASSF1A homodimerizes and heterodimerizes with the Ras-GTP binding protein Nore1.
findings: []
- id: PMID:11980706
title: 'The complex of Arl2-GTP and PDE delta: from structure to function.'
findings: []
- id: PMID:12202034
title: Ras and Rap control AMPA receptor trafficking during synaptic plasticity.
findings: []
- id: PMID:12620389
title: Novel raf kinase protein-protein interactions found by an exhaustive yeast two-hybrid analysis.
findings: []
- id: PMID:12628188
title: Structural evidence for feedback activation by Ras.GTP of the Ras-specific nucleotide exchange factor SOS.
findings: []
- id: PMID:14500341
title: Alternative splicing of the human proto-oncogene c-H-ras renders a new Ras family protein that trafficks to cytoplasm
and nucleus.
findings: []
- id: PMID:14724641
title: Ras regulates assembly of mitogenic signalling complexes through the effector protein IMP.
findings: []
- id: PMID:15507210
title: Structural analysis of autoinhibition in the Ras activator Son of sevenless.
findings: []
- id: PMID:15886098
title: RIN1 is an ABL tyrosine kinase activator and a regulator of epithelial-cell adhesion and migration.
findings: []
- id: PMID:16213212
title: Regulation of p53 translation and induction after DNA damage by ribosomal protein L26 and nucleolin.
findings: []
- id: PMID:16316996
title: The RAP1 guanine nucleotide exchange factor Epac2 couples cyclic AMP and Ras signals at the plasma membrane.
findings: []
- id: PMID:16698549
title: GTP-Ras disrupts the intramolecular complex of C1 and RA domains of Nore1.
findings: []
- id: PMID:16810318
title: Release of RASSF1C from the nucleus by Daxx degradation links DNA damage and SAPK/JNK activation.
findings: []
- id: PMID:17084389
title: Catalytic competence of the Ras-GEF domain of hSos1 requires intra-REM domain interactions mediated by phenylalanine
577.
findings: []
- id: PMID:17260967
title: GTP binding is essential to the protein kinase activity of LRRK2, a causative gene product for familial Parkinson's disease.
findings: []
- id: PMID:17540175
title: Binding of ras to phosphoinositide 3-kinase p110alpha is required for ras-driven tumorigenesis in mice.
findings: []
- id: PMID:17724343
title: Spatial regulation of Raf kinase signaling by RKTG.
findings: []
- id: PMID:18073111
title: Transformation efficiency of RasQ61 mutants linked to structural features of the switch regions in the presence of
Raf.
findings: []
- id: PMID:18273062
title: A novel switch region regulates H-ras membrane orientation and signal output.
findings: []
- id: PMID:18454158
title: Membrane-dependent signal integration by the Ras activator Son of sevenless.
findings: []
- id: PMID:18596699
title: Novel type of Ras effector interaction established between tumour suppressor NORE1A and Ras switch II.
findings: []
- id: PMID:19063885
title: Regulation of growth and survival of activated T cells by cell-transducing inhibitors of Ras.
findings: []
- id: PMID:19141281
title: Differences in flexibility underlie functional differences in the Ras activators son of sevenless and Ras guanine
nucleotide releasing factor 1.
findings: []
- id: PMID:19222999
title: Reassessment of the role of FKBP38 in the Rheb/mTORC1 pathway.
findings: []
- id: PMID:19696784
title: Nucleocytoplasmic transport of Alp7/TACC organizes spatiotemporal microtubule formation in fission yeast.
findings: []
- id: PMID:20080631
title: Ras membrane orientation and nanodomain localization generate isoform diversity.
findings: []
- id: PMID:20133692
title: Role of the histone domain in the autoinhibition and activation of the Ras activator Son of Sevenless.
findings: []
- id: PMID:20133694
title: Allosteric gating of Son of sevenless activity by the histone domain.
findings: []
- id: PMID:20154697
title: An oncogene-tumor suppressor cascade drives metastatic prostate cancer by coordinately activating Ras and nuclear
factor-kappaB.
findings: []
- id: PMID:20178605
title: Genetic and functional characterization of putative Ras/Raf interaction inhibitors in C. elegans and mammalian cells.
findings: []
- id: PMID:20936779
title: A human MAP kinase interactome.
findings: []
- id: PMID:2122974
title: Modulation of guanine nucleotides bound to Ras in NIH3T3 cells by oncogenes, growth factors, and the GTPase activating
protein (GAP).
findings: []
- id: PMID:21968647
title: PAQR10 and PAQR11 mediate Ras signaling in the Golgi apparatus.
findings: []
- id: PMID:22020336
title: p37δ is a new isoform of PI3K p110δ that increases cell proliferation and is overexpressed in tumors.
findings: []
- id: PMID:22065586
title: Oncogenic Ras and B-Raf proteins positively regulate death receptor 5 expression through co-activation of ERK and
JNK signaling.
findings: []
- id: PMID:22169110
title: Nilotinib and MEK inhibitors induce synthetic lethality through paradoxical activation of RAF in drug-resistant chronic
myeloid leukemia.
findings: []
- id: PMID:23027131
title: Wnt4 inhibits cell motility induced by oncogenic Ras.
findings: []
- id: PMID:24412244
title: Charting the molecular links between driver and susceptibility genes in colorectal cancer.
findings: []
- id: PMID:24441586
title: Integrated RAS signaling defined by parallel NMR detection of effectors and regulators.
findings: []
- id: PMID:24929361
title: Protein interaction switches coordinate Raf-1 and MST2/Hippo signalling.
findings: []
- id: PMID:25241761
title: Using an in situ proximity ligation assay to systematically profile endogenous protein-protein interactions in a
pathway network.
findings: []
- id: PMID:25684575
title: Allosteric effects of the oncogenic RasQ61L mutant on Raf-RBD.
findings: []
- id: PMID:26165597
title: The RAS-Binding Domain of Human BRAF Protein Serine/Threonine Kinase Exhibits Allosteric Conformational Changes upon
Binding HRAS.
findings: []
- id: PMID:26635368
title: Interaction between a Domain of the Negative Regulator of the Ras-ERK Pathway, SPRED1 Protein, and the GTPase-activating
Protein-related Domain of Neurofibromin Is Implicated in Legius Syndrome and Neurofibromatosis Type 1.
findings: []
- id: PMID:28514442
title: Architecture of the human interactome defines protein communities and disease networks.
findings: []
- id: PMID:30194290
title: Interrogating the protein interactomes of RAS isoforms identifies PIP5K1A as a KRAS-specific vulnerability.
findings: []
- id: PMID:30518913
title: UBIAD1 suppresses the proliferation of bladder carcinoma cells by regulating H-Ras intracellular trafficking via
interaction with the C-terminal domain of H-Ras.
findings: []
- id: PMID:31209342
title: GGTase3 is a newly identified geranylgeranyltransferase targeting a ubiquitin ligase.
findings: []
- id: PMID:32296183
title: A reference map of the human binary protein interactome.
findings: []
- id: PMID:32814053
title: Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation
in Affected Brains.
findings: []
- id: PMID:33961781
title: Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
findings: []
- id: PMID:34591612
title: A protein interaction landscape of breast cancer.
findings: []
- id: PMID:34591642
title: A protein network map of head and neck cancer reveals PIK3CA mutant drug sensitivity.
findings: []
- id: PMID:35512704
title: Systematic discovery of mutation-directed neo-protein-protein interactions in cancer.
findings: []
- id: PMID:35831509
title: Structure-function analysis of the SHOC2-MRAS-PP1C holophosphatase complex.
findings: []
- id: PMID:35839996
title: A Proteomic Approach Identifies Isoform-Specific and Nucleotide-Dependent RAS Interactions.
findings: []
- id: PMID:40205054
title: Multimodal cell maps as a foundation for structural and functional genomics.
findings: []
- id: PMID:8142349
title: Solution structure and dynamics of ras p21.GDP determined by heteronuclear three- and four-dimensional NMR spectroscopy.
findings: []
- id: PMID:8332187
title: Normal and oncogenic p21ras proteins bind to the amino-terminal regulatory domain of c-Raf-1.
findings: []
- id: PMID:8607982
title: Ras-related proteins in signal transduction and growth control.
findings: []
- id: PMID:8670882
title: Identification of a novel Rac1-interacting protein involved in membrane ruffling.
findings: []
- id: PMID:9020890
title: Ras activation in platelets after stimulation of the thrombin receptor, thromboxane A2 receptor or protein kinase
C.
findings: []
- id: PMID:9054499
title: Oncogenic ras provokes premature cell senescence associated with accumulation of p53 and p16INK4a.
findings: []
- id: PMID:9144171
title: Protein binding and signaling properties of RIN1 suggest a unique effector function.
findings: []
- id: PMID:9178006
title: Mechanism of activation of the Caenorhabditis elegans ras homologue let-60 by a novel, temperature-sensitive, gain-of-function
mutation.
findings: []
- id: PMID:9219684
title: 'The Ras-RasGAP complex: structural basis for GTPase activation and its loss in oncogenic Ras mutants.'
findings: []
- id: PMID:9230043
title: Regional polysterism in the GTP-bound form of the human c-Ha-Ras protein.
findings: []
- id: PMID:9447984
title: Regulation of Sos activity by intramolecular interactions.
findings: []
- id: PMID:9488663
title: Identification of Nore1 as a potential Ras effector.
findings: []
- id: PMID:9690470
title: The structural basis of the activation of Ras by Sos.
findings: []
- id: PMID:9765203
title: Premature senescence involving p53 and p16 is activated in response to constitutive MEK/MAPK mitogenic signaling.
findings: []
- id: PMID:9880516
title: A non-farnesylated Ha-Ras protein can be palmitoylated and trigger potent differentiation and transformation.
findings: []
- id: Reactome:R-HSA-1168636
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-1225951
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-1225957
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-1250383
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-1306972
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-1433471
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-170986
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-177938
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-177945
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-186834
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-210977
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-2179407
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-2424477
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-392054
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-4093331
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-4093339
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-5218845
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-5621573
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-5624486
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-5624492
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-5624494
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-5637806
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-5637808
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-5654392
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-5654402
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-5654413
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-5654426
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-5654600
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-5654618
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-5654647
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-5654663
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-5655241
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-5655277
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-5655326
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-5655347
title: 'TODO: Fetch title'
findings: []
- id: Reactome:R-HSA-5658231
title: 'TODO: Fetch title'
findings: []
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core_functions:
- molecular_function:
id: GO:0003924
label: GTPase activity
description: >-
HRAS is a small monomeric GTPase that binds GDP/GTP and hydrolyzes GTP to
operate as a molecular switch. In its GTP-bound state it recruits effectors
that transmit Ras signaling, especially through RAF-MEK-ERK/MAPK pathways.
Membrane targeting through CAAX processing and palmitoylation places this
switch primarily at the plasma membrane and Golgi/endomembrane
compartments. Proliferation, senescence, motility, and transcriptional
outputs are downstream, context-dependent consequences rather than the core
molecular function.
directly_involved_in:
- id: GO:0007265
label: Ras protein signal transduction
- id: GO:0043410
label: positive regulation of MAPK cascade
locations:
- id: GO:0005886
label: plasma membrane
- id: GO:0000139
label: Golgi membrane
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
RAS proteins (including HRAS) are **GTP hydrolases** that function as
**binary molecular switches**: GDP-bound is “OFF,” GTP-bound is “ON,” and
the ON state supports binding to downstream effector proteins.
- molecular_function:
id: GO:0005525
label: GTP binding
description: >-
HRAS binding to GTP/GDP is co-equal with GTP hydrolysis in the Ras molecular
switch: GDP-bound HRAS is inactive, while GTP-bound HRAS recruits effectors
that route signals into MAPK and other Ras effector pathways.
directly_involved_in:
- id: GO:0007265
label: Ras protein signal transduction
locations:
- id: GO:0005886
label: plasma membrane
- id: GO:0000139
label: Golgi membrane
supported_by:
- reference_id: file:human/HRAS/HRAS-deep-research-falcon.md
supporting_text: >-
GTP binding | HRAS is a canonical RAS small GTPase that binds GDP/GTP
with high affinity and functions as a nucleotide-dependent molecular
switch.
proposed_new_terms: []
suggested_questions:
- question: >-
Which HRAS effector interactions in the GOA set are supported by direct
GTP-state-dependent binding and should be converted from generic protein
binding to specific effector-binding annotations?
- question: >-
Which distal proliferation, transcription, migration, or developmental
annotations are based on oncogenic mutant HRAS rather than normal wild-type
HRAS signaling?
- question: >-
Should HRAS compartment-specific signaling from plasma membrane, Golgi, and
recycling endosome be represented with separate non-core localization or
process annotations?
suggested_experiments:
- description: >-
Curate the generic protein-binding rows by mapping each interactor to
nucleotide-state-dependent effector evidence and replacing supported rows
with specific binding terms where available.
- description: >-
Compare wild-type HRAS and oncogenic HRAS alleles in controlled cell systems
for MAPK, PI3K, PLCepsilon, senescence, and transcriptional outputs to
distinguish core signaling from mutant-specific phenotypes.
- description: >-
Use live-cell imaging with palmitoylation/prenylation mutants to separate
plasma membrane, Golgi, and recycling-endosome pools and their contribution
to effector activation.