11-beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1) is an NADP(H)-dependent short-chain dehydrogenase/reductase anchored in the endoplasmic reticulum membrane as a single-pass type II membrane protein, with its catalytic domain facing the ER lumen. It catalyzes the interconversion of the inactive 11-keto glucocorticoid cortisone and the active 11-hydroxy glucocorticoid cortisol (and 11-dehydrocorticosterone/corticosterone). Although bidirectional in vitro, in vivo it acts predominantly as a reductase (cortisone to cortisol); its reductive directionality is set by the supply of NADPH generated in the ER lumen by hexose-6-phosphate dehydrogenase (H6PD). By regenerating active glucocorticoids locally, 11beta-HSD1 amplifies pre-receptor glucocorticoid action in liver, adipose tissue, brain, eye and other tissues, making it a therapeutic target in metabolic syndrome, type 2 diabetes and obesity. It functions as a homodimer and has broad substrate specificity, additionally metabolizing 7-oxo/7-hydroxy oxysterols (e.g. 7-ketocholesterol), 7-oxo bile acids, neurosteroids and 11-oxygenated C19 steroids. Loss or reduction of activity causes cortisone reductase deficiency.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0006706
steroid catabolic process
|
IBA
GO_REF:0000033 |
MODIFY |
Summary: Phylogenetically-inferred biological process. HSD11B1 does participate in steroid metabolism, but its predominant physiological role is reductive activation of glucocorticoids (cortisone to cortisol), i.e. metabolism/interconversion rather than catabolism. The catabolic framing fits some oxidative or oxysterol reactions but is imprecise for the core function.
Reason: Steroid catabolic process mischaracterizes the core in-vivo activity, which is reductive regeneration of active cortisol (a glucocorticoid metabolic/interconversion process), not steroid breakdown. Generalize/re-target to glucocorticoid metabolic process, which correctly covers the bidirectional interconversion of active and inactive glucocorticoids.
Propagation Review
Root cause:
TERM SCOPING PROBLEM
Failure modes:
GRANULARITY MISMATCH
Proposed replacements:
glucocorticoid metabolic process
Supporting Evidence:
file:human/HSD11B1/HSD11B1-uniprot.txt
functions as a reductase in vivo, thereby increasing the concentration
file:human/HSD11B1/HSD11B1-uniprot.txt
of active glucocorticoids
|
|
GO:0005789
endoplasmic reticulum membrane
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phylogenetically-inferred localization to the ER membrane, consistent with direct experimental evidence that 11beta-HSD1 is an ER-membrane protein with its catalytic domain in the ER lumen. This is the core cellular location where the enzyme acts.
Reason: Well supported by experimental localization data; the enzyme is active in the ER membrane (lumen-facing catalytic domain).
Supporting Evidence:
PMID:10497248
localization of both 11beta-HSD1 and
PMID:10497248
the catalytic domain containing the C terminus is protruding into the ER
|
|
GO:0070524
11-beta-hydroxysteroid dehydrogenase (NADP+) activity
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phylogenetically-inferred core molecular function. This is the defining catalytic activity of HSD11B1, corroborated by numerous experimental (IDA) annotations and the UniProt catalytic-activity record (EC 1.1.1.146; 11beta-hydroxysteroid + NADP(+) = 11-oxosteroid + NADPH). This is the core molecular function.
Reason: Definitive, well-supported core enzymatic activity of the gene product.
Supporting Evidence:
PMID:15513927
ER-localized membrane protein that catalyzes the interconversion of cortisone
file:human/HSD11B1/HSD11B1-uniprot.txt
Reaction=cortisone + NADPH + H(+) = cortisol + NADP(+);
|
|
GO:0005496
steroid binding
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Phylogenetically-inferred steroid binding, reflecting the enzyme's binding of steroid substrates (glucocorticoids and other steroid/sterol substrates) in its active site. This is a real but generic molecular function that is subsidiary to the catalytic activity.
Reason: Substrate binding is genuine but is an aspect of the catalytic mechanism rather than an independent core function; the informative core MF is the dehydrogenase activity.
Supporting Evidence:
file:human/HSD11B1/HSD11B1-uniprot.txt
besides glucocorticoids, it accepts other steroid and sterol substrates
|
|
GO:0004090
carbonyl reductase (NADPH) activity
|
IEA
GO_REF:0000116 |
MARK AS OVER ANNOTATED |
Summary: RHEA-based electronic annotation. HSD11B1 does perform NADPH-dependent carbonyl (oxo) reductions on several substrates (e.g. 7-oxo bile acids, oxysterols), so the term is not wrong, but it is a broad generic parent that is far less informative than the specific 11-beta-hydroxysteroid dehydrogenase and cortisol dehydrogenase activities.
Reason: Correct in essence (NADPH-dependent carbonyl reduction occurs) but overly general; the specific dehydrogenase activities better describe the function.
Supporting Evidence:
file:human/HSD11B1/HSD11B1-uniprot.txt
Reaction=cortisone + NADPH + H(+) = cortisol + NADP(+);
|
|
GO:0005789
endoplasmic reticulum membrane
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: Electronic annotation from the UniProt Subcellular Location vocabulary mapping, consistent with experimental evidence that 11beta-HSD1 is an ER-membrane protein.
Reason: Correct core localization, agreeing with experimental (IDA) and phylogenetic (IBA) evidence.
Supporting Evidence:
file:human/HSD11B1/HSD11B1-uniprot.txt
Endoplasmic reticulum membrane
file:human/HSD11B1/HSD11B1-uniprot.txt
type II membrane protein
|
|
GO:0047022
7-beta-hydroxysteroid dehydrogenase (NADP+) activity
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Electronic annotation (EC 1.1.1.201). HSD11B1 has documented 7-oxosteroid reductase / 7beta-hydroxysteroid dehydrogenase activity, interconverting 7-oxo and 7beta-hydroxy sterols/bile acids/neurosteroids (e.g. 7-ketocholesterol to 7beta-hydroxycholesterol). This is a real secondary catalytic activity of the enzyme.
Reason: EC-backed secondary activity supported by the UniProt catalytic-activity record and by experimental oxysterol/bile-acid studies; a genuine additional molecular function.
Supporting Evidence:
file:human/HSD11B1/HSD11B1-uniprot.txt
a 7beta-hydroxysteroid + NADP(+) = a 7-oxosteroid + NADPH +
PMID:15152005
potential role in 7-ketocholesterol metabolism.
|
|
GO:0070524
11-beta-hydroxysteroid dehydrogenase (NADP+) activity
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Electronic annotation (EC 1.1.1.146) for the core 11beta-HSD activity. Duplicates the IBA and IDA annotations of the same term and is fully supported.
Reason: Correct core molecular function; duplicate of the experimentally and phylogenetically supported term.
Supporting Evidence:
file:human/HSD11B1/HSD11B1-uniprot.txt
Reaction=cortisone + NADPH + H(+) = cortisol + NADP(+);
|
|
GO:0102196
cortisol dehydrogenase (NADP+) activity
|
IEA
GO_REF:0000116 |
ACCEPT |
Summary: RHEA-based electronic annotation (RHEA:68616, cortisone + NADPH = cortisol + NADP(+)) capturing the physiologically dominant reductive reaction of HSD11B1, the regeneration of active cortisol from cortisone. This is a specific and accurate representation of the core in-vivo function.
Reason: Specific, biologically accurate term for the enzyme's predominant in-vivo reductase reaction (cortisone to cortisol); complements the broader 11beta-HSD activity term.
Supporting Evidence:
file:human/HSD11B1/HSD11B1-uniprot.txt
Reaction=cortisone + NADPH + H(+) = cortisol + NADP(+);
PMID:15513927
ER-localized membrane protein that catalyzes the interconversion of cortisone
|
|
GO:0005789
endoplasmic reticulum membrane
|
TAS
Reactome:R-HSA-194023 |
ACCEPT |
Summary: Reactome-asserted ER-membrane localization for the HSD11B1-containing reaction. Consistent with all other localization evidence for this enzyme.
Reason: Correct core localization, supported by experimental and phylogenetic evidence.
Supporting Evidence:
PMID:10497248
localization of both 11beta-HSD1 and
|
|
GO:0005789
endoplasmic reticulum membrane
|
TAS
Reactome:R-HSA-9757706 |
ACCEPT |
Summary: Reactome-asserted ER-membrane localization for a hepatic HSD11B1 reaction (prednisone to prednisolone reduction). Consistent with all other localization evidence.
Reason: Correct core localization, supported by experimental and phylogenetic evidence.
Supporting Evidence:
PMID:10497248
the catalytic domain containing the C terminus is protruding into the ER
|
|
GO:0005789
endoplasmic reticulum membrane
|
IDA
PMID:10497248 The N-terminal anchor sequences of 11beta-hydroxysteroid deh... |
ACCEPT |
Summary: Direct experimental evidence (fluorescence microscopy and protease-protection assays) localizing 11beta-HSD1 to the ER membrane, with the catalytic C-terminal domain protruding into the ER lumen and the N-terminus cytoplasmic (single-pass type II membrane topology). This anchors the core localization.
Reason: High-quality direct experimental evidence for the core ER-membrane localization.
Supporting Evidence:
PMID:10497248
the N terminus of 11beta-HSD1 is cytoplasmic,
PMID:10497248
the catalytic domain containing the C terminus is protruding into the ER
|
|
GO:0042803
protein homodimerization activity
|
IDA
PMID:15513927 Conformational flexibility in crystal structures of human 11... |
ACCEPT |
Summary: Crystallographic evidence that human 11beta-HSD1 assembles as a homo-oligomer; the structures show the C-termini of subunits converging to form an oligomerization motif. UniProt records the enzyme as a homodimer. The homodimerization is genuine but is a structural/quaternary property rather than the informative core molecular function.
Reason: Homodimerization is directly demonstrated by crystal structures and recorded by UniProt; a real molecular property, kept but not the core catalytic function.
Supporting Evidence:
PMID:15513927
four 11beta-HSD1 C termini converge to form an as yet
file:human/HSD11B1/HSD11B1-uniprot.txt
SUBUNIT: Homodimer.
|
|
GO:0042803
protein homodimerization activity
|
IDA
PMID:17919905 The discovery of 2-anilinothiazolones as 11beta-HSD1 inhibit... |
ACCEPT |
Summary: X-ray co-crystal structure of 11beta-HSD1 (in complex with NADP and an inhibitor) supporting the oligomeric assembly of the enzyme. Consistent with the UniProt homodimer annotation.
Reason: Structural evidence supports homodimerization; genuine quaternary structure, retained as a non-core property.
Supporting Evidence:
PMID:17919905
The binding mode was determined through the X-ray co-crystal
file:human/HSD11B1/HSD11B1-uniprot.txt
SUBUNIT: Homodimer.
|
|
GO:0042803
protein homodimerization activity
|
IDA
PMID:18069989 Structural characterization and pharmacodynamic effects of a... |
ACCEPT |
Summary: X-ray crystallographic characterization of an orally active 11beta-HSD1 inhibitor complex, contributing structural support for the homodimeric assembly of the enzyme, as recorded by UniProt.
Reason: Structural evidence supports homodimerization; retained as a real non-core property.
Supporting Evidence:
file:human/HSD11B1/HSD11B1-uniprot.txt
SUBUNIT: Homodimer.
|
|
GO:0042803
protein homodimerization activity
|
IDA
PMID:18485702 Pyridine amides as potent and selective inhibitors of 11beta... |
ACCEPT |
Summary: X-ray crystal structure of 11beta-HSD1 in complex with NADP and an inhibitor, contributing structural evidence consistent with the homodimeric assembly recorded by UniProt.
Reason: Structural evidence supports homodimerization; retained as a real non-core property.
Supporting Evidence:
file:human/HSD11B1/HSD11B1-uniprot.txt
SUBUNIT: Homodimer.
|
|
GO:0042803
protein homodimerization activity
|
IDA
PMID:18553955 Discovery of novel, potent benzamide inhibitors of 11beta-hy... |
ACCEPT |
Summary: Crystallographic study of benzamide inhibitor complexes of 11beta-HSD1, contributing structural support for the enzyme's homodimeric assembly recorded by UniProt.
Reason: Structural evidence supports homodimerization; retained as a real non-core property.
Supporting Evidence:
file:human/HSD11B1/HSD11B1-uniprot.txt
SUBUNIT: Homodimer.
|
|
GO:0042803
protein homodimerization activity
|
IDA
PMID:19217779 Discovery and optimization of piperidyl benzamide derivative... |
ACCEPT |
Summary: Crystallographic study of piperidyl benzamide inhibitor complexes of 11beta-HSD1, contributing structural support for the enzyme's homodimeric assembly recorded by UniProt.
Reason: Structural evidence supports homodimerization; retained as a real non-core property.
Supporting Evidence:
file:human/HSD11B1/HSD11B1-uniprot.txt
SUBUNIT: Homodimer.
|
|
GO:0050661
NADP binding
|
IDA
PMID:15513927 Conformational flexibility in crystal structures of human 11... |
KEEP AS NON CORE |
Summary: NADP(H) is the obligate cofactor of 11beta-HSD1, and crystal structures were solved as ternary complexes containing NADP. NADP binding is a genuine molecular function but is a cofactor-binding aspect of the catalytic mechanism rather than the informative core MF.
Reason: Cofactor binding is real and structurally demonstrated but subsidiary to the dehydrogenase activity, which is the core function.
Supporting Evidence:
PMID:15513927
two ternary complexes of 11beta-HSD1
file:human/HSD11B1/HSD11B1-uniprot.txt
cosubstrate NADPH
|
|
GO:0050661
NADP binding
|
IDA
PMID:17919905 The discovery of 2-anilinothiazolones as 11beta-HSD1 inhibit... |
KEEP AS NON CORE |
Summary: X-ray co-crystal structure with NADP demonstrating cofactor binding. Genuine but subsidiary to the core dehydrogenase activity.
Reason: Structurally demonstrated cofactor binding, retained as a non-core molecular function.
Supporting Evidence:
PMID:17919905
The binding mode was determined through the X-ray co-crystal
|
|
GO:0050661
NADP binding
|
IDA
PMID:18069989 Structural characterization and pharmacodynamic effects of a... |
KEEP AS NON CORE |
Summary: Structural characterization of an 11beta-HSD1 complex demonstrating NADP cofactor binding. Genuine but subsidiary to the core dehydrogenase activity.
Reason: Structurally demonstrated cofactor binding, retained as a non-core molecular function.
Supporting Evidence:
file:human/HSD11B1/HSD11B1-uniprot.txt
cosubstrate NADPH
|
|
GO:0050661
NADP binding
|
IDA
PMID:18485702 Pyridine amides as potent and selective inhibitors of 11beta... |
KEEP AS NON CORE |
Summary: Crystal structure of 11beta-HSD1 in complex with NADP demonstrating cofactor binding. Genuine but subsidiary to the core dehydrogenase activity.
Reason: Structurally demonstrated cofactor binding, retained as a non-core molecular function.
Supporting Evidence:
file:human/HSD11B1/HSD11B1-uniprot.txt
cosubstrate NADPH
|
|
GO:0050661
NADP binding
|
IDA
PMID:18553955 Discovery of novel, potent benzamide inhibitors of 11beta-hy... |
KEEP AS NON CORE |
Summary: Crystallographic evidence of NADP cofactor binding by 11beta-HSD1. Genuine but subsidiary to the core dehydrogenase activity.
Reason: Structurally demonstrated cofactor binding, retained as a non-core molecular function.
Supporting Evidence:
file:human/HSD11B1/HSD11B1-uniprot.txt
cosubstrate NADPH
|
|
GO:0050661
NADP binding
|
IDA
PMID:19217779 Discovery and optimization of piperidyl benzamide derivative... |
KEEP AS NON CORE |
Summary: Crystallographic evidence of NADP cofactor binding by 11beta-HSD1. Genuine but subsidiary to the core dehydrogenase activity.
Reason: Structurally demonstrated cofactor binding, retained as a non-core molecular function.
Supporting Evidence:
file:human/HSD11B1/HSD11B1-uniprot.txt
cosubstrate NADPH
|
|
GO:0070524
11-beta-hydroxysteroid dehydrogenase (NADP+) activity
|
IDA
PMID:10497248 The N-terminal anchor sequences of 11beta-hydroxysteroid deh... |
ACCEPT |
Summary: Direct experimental measurement of 11beta-HSD1 enzymatic activity (glucocorticoid interconversion with defined kinetics for corticosterone and 11-dehydrocorticosterone) in the study that also established ER-membrane topology. Supports the core catalytic function.
Reason: Direct experimental evidence for the core 11beta-HSD (NADP+) activity.
Supporting Evidence:
PMID:10497248
regulate the ratio of
PMID:10497248
active endogenous glucocorticoids to their inactive keto-metabolites
|
|
GO:0070524
11-beta-hydroxysteroid dehydrogenase (NADP+) activity
|
IDA
PMID:15152005 Appropriate function of 11beta-hydroxysteroid dehydrogenase ... |
ACCEPT |
Summary: Direct experimental evidence that the ER-lumen-oriented 11beta-HSD1 carries out efficient glucocorticoid oxidoreduction (cortisol oxidation shown to depend on luminal orientation), establishing the core catalytic activity and its pre-receptor role.
Reason: Direct experimental evidence for the core 11beta-HSD (NADP+) activity.
Supporting Evidence:
PMID:15152005
11beta-HSD1) exerts an important pre-receptor function
PMID:15152005
essential for efficient oxidation of cortisol.
|
|
GO:0070524
11-beta-hydroxysteroid dehydrogenase (NADP+) activity
|
IDA
PMID:17070044 Adamantane sulfone and sulfonamide 11-beta-HSD1 Inhibitors. |
ACCEPT |
Summary: Enzyme-inhibition study demonstrating 11beta-HSD1 catalytic activity in liver, fat and brain (target of adamantane sulfone/sulfonamide inhibitors), consistent with the core dehydrogenase activity of the enzyme.
Reason: Experimental evidence of the core enzymatic activity via inhibitor-based assays.
Supporting Evidence:
PMID:17070044
strongly inhibit liver, fat, and brain HSD1
|
|
GO:0070524
11-beta-hydroxysteroid dehydrogenase (NADP+) activity
|
IDA
PMID:17919905 The discovery of 2-anilinothiazolones as 11beta-HSD1 inhibit... |
ACCEPT |
Summary: Enzyme-inhibition and X-ray co-crystal study confirming the 11beta-HSD1 catalytic activity used as the assay target, consistent with the core dehydrogenase function.
Reason: Experimental evidence of the core enzymatic activity in an inhibitor/structure study.
Supporting Evidence:
PMID:17919905
2-anilinothiazolones were prepared as inhibitors of
|
|
GO:0016020
membrane
|
HDA
PMID:19946888 Defining the membrane proteome of NK cells. |
MARK AS OVER ANNOTATED |
Summary: High-throughput mass-spectrometry membrane-proteome study of an NK-like cell line that identified HSD11B1 among ~1843 proteins. "Membrane" is a generic parent of the specific and well-supported ER-membrane localization, and the annotation derives from a broad proteomics screen rather than targeted localization.
Reason: Not wrong (the enzyme is a membrane protein) but uninformatively general relative to the specific ER membrane localization; sourced from a high-throughput proteomics dataset.
Supporting Evidence:
PMID:19946888
identified 1843 proteins with high confidence scores
|
id: P28845
gene_symbol: HSD11B1
product_type: PROTEIN
status: INITIALIZED
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: 11-beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1) is an NADP(H)-dependent
short-chain dehydrogenase/reductase anchored in the endoplasmic reticulum membrane as a
single-pass type II membrane protein, with its catalytic domain facing the ER lumen. It
catalyzes the interconversion of the inactive 11-keto glucocorticoid cortisone and the
active 11-hydroxy glucocorticoid cortisol (and 11-dehydrocorticosterone/corticosterone).
Although bidirectional in vitro, in vivo it acts predominantly as a reductase (cortisone
to cortisol); its reductive directionality is set by the supply of NADPH generated in the
ER lumen by hexose-6-phosphate dehydrogenase (H6PD). By regenerating active glucocorticoids
locally, 11beta-HSD1 amplifies pre-receptor glucocorticoid action in liver, adipose tissue,
brain, eye and other tissues, making it a therapeutic target in metabolic syndrome, type 2
diabetes and obesity. It functions as a homodimer and has broad substrate specificity,
additionally metabolizing 7-oxo/7-hydroxy oxysterols (e.g. 7-ketocholesterol), 7-oxo bile
acids, neurosteroids and 11-oxygenated C19 steroids. Loss or reduction of activity causes
cortisone reductase deficiency.
existing_annotations:
- term:
id: GO:0006706
label: steroid catabolic process
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: Phylogenetically-inferred biological process. HSD11B1 does participate in steroid
metabolism, but its predominant physiological role is reductive activation of
glucocorticoids (cortisone to cortisol), i.e. metabolism/interconversion rather than
catabolism. The catabolic framing fits some oxidative or oxysterol reactions but is
imprecise for the core function.
action: MODIFY
reason: Steroid catabolic process mischaracterizes the core in-vivo activity, which is
reductive regeneration of active cortisol (a glucocorticoid metabolic/interconversion
process), not steroid breakdown. Generalize/re-target to glucocorticoid metabolic process,
which correctly covers the bidirectional interconversion of active and inactive
glucocorticoids.
proposed_replacement_terms:
- id: GO:0008211
label: glucocorticoid metabolic process
propagation_review:
root_cause: TERM_SCOPING_PROBLEM
failure_modes:
- GRANULARITY_MISMATCH
supported_by:
- reference_id: file:human/HSD11B1/HSD11B1-uniprot.txt
supporting_text: functions as a reductase in vivo, thereby increasing the concentration
- reference_id: file:human/HSD11B1/HSD11B1-uniprot.txt
supporting_text: of active glucocorticoids
- term:
id: GO:0005789
label: endoplasmic reticulum membrane
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: Phylogenetically-inferred localization to the ER membrane, consistent with direct
experimental evidence that 11beta-HSD1 is an ER-membrane protein with its catalytic
domain in the ER lumen. This is the core cellular location where the enzyme acts.
action: ACCEPT
reason: Well supported by experimental localization data; the enzyme is active in the ER
membrane (lumen-facing catalytic domain).
supported_by:
- reference_id: PMID:10497248
supporting_text: localization of both 11beta-HSD1 and
- reference_id: PMID:10497248
supporting_text: the catalytic domain containing the C terminus is protruding into the ER
- term:
id: GO:0070524
label: 11-beta-hydroxysteroid dehydrogenase (NADP+) activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: Phylogenetically-inferred core molecular function. This is the defining catalytic
activity of HSD11B1, corroborated by numerous experimental (IDA) annotations and the
UniProt catalytic-activity record (EC 1.1.1.146; 11beta-hydroxysteroid + NADP(+) =
11-oxosteroid + NADPH). This is the core molecular function.
action: ACCEPT
reason: Definitive, well-supported core enzymatic activity of the gene product.
supported_by:
- reference_id: PMID:15513927
supporting_text: ER-localized membrane protein that catalyzes the interconversion of cortisone
- reference_id: file:human/HSD11B1/HSD11B1-uniprot.txt
supporting_text: Reaction=cortisone + NADPH + H(+) = cortisol + NADP(+);
- term:
id: GO:0005496
label: steroid binding
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: Phylogenetically-inferred steroid binding, reflecting the enzyme's binding of
steroid substrates (glucocorticoids and other steroid/sterol substrates) in its active
site. This is a real but generic molecular function that is subsidiary to the catalytic
activity.
action: KEEP_AS_NON_CORE
reason: Substrate binding is genuine but is an aspect of the catalytic mechanism rather than
an independent core function; the informative core MF is the dehydrogenase activity.
supported_by:
- reference_id: file:human/HSD11B1/HSD11B1-uniprot.txt
supporting_text: besides glucocorticoids, it accepts other steroid and sterol substrates
- term:
id: GO:0004090
label: carbonyl reductase (NADPH) activity
evidence_type: IEA
original_reference_id: GO_REF:0000116
qualifier: enables
review:
summary: RHEA-based electronic annotation. HSD11B1 does perform NADPH-dependent carbonyl
(oxo) reductions on several substrates (e.g. 7-oxo bile acids, oxysterols), so the term
is not wrong, but it is a broad generic parent that is far less informative than the
specific 11-beta-hydroxysteroid dehydrogenase and cortisol dehydrogenase activities.
action: MARK_AS_OVER_ANNOTATED
reason: Correct in essence (NADPH-dependent carbonyl reduction occurs) but overly general;
the specific dehydrogenase activities better describe the function.
supported_by:
- reference_id: file:human/HSD11B1/HSD11B1-uniprot.txt
supporting_text: Reaction=cortisone + NADPH + H(+) = cortisol + NADP(+);
- term:
id: GO:0005789
label: endoplasmic reticulum membrane
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: Electronic annotation from the UniProt Subcellular Location vocabulary mapping,
consistent with experimental evidence that 11beta-HSD1 is an ER-membrane protein.
action: ACCEPT
reason: Correct core localization, agreeing with experimental (IDA) and phylogenetic (IBA)
evidence.
supported_by:
- reference_id: file:human/HSD11B1/HSD11B1-uniprot.txt
supporting_text: Endoplasmic reticulum membrane
- reference_id: file:human/HSD11B1/HSD11B1-uniprot.txt
supporting_text: type II membrane protein
- term:
id: GO:0047022
label: 7-beta-hydroxysteroid dehydrogenase (NADP+) activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: enables
review:
summary: Electronic annotation (EC 1.1.1.201). HSD11B1 has documented 7-oxosteroid
reductase / 7beta-hydroxysteroid dehydrogenase activity, interconverting 7-oxo and
7beta-hydroxy sterols/bile acids/neurosteroids (e.g. 7-ketocholesterol to
7beta-hydroxycholesterol). This is a real secondary catalytic activity of the enzyme.
action: ACCEPT
reason: EC-backed secondary activity supported by the UniProt catalytic-activity record and
by experimental oxysterol/bile-acid studies; a genuine additional molecular function.
supported_by:
- reference_id: file:human/HSD11B1/HSD11B1-uniprot.txt
supporting_text: a 7beta-hydroxysteroid + NADP(+) = a 7-oxosteroid + NADPH +
- reference_id: PMID:15152005
supporting_text: potential role in 7-ketocholesterol metabolism.
- term:
id: GO:0070524
label: 11-beta-hydroxysteroid dehydrogenase (NADP+) activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: enables
review:
summary: Electronic annotation (EC 1.1.1.146) for the core 11beta-HSD activity. Duplicates
the IBA and IDA annotations of the same term and is fully supported.
action: ACCEPT
reason: Correct core molecular function; duplicate of the experimentally and phylogenetically
supported term.
supported_by:
- reference_id: file:human/HSD11B1/HSD11B1-uniprot.txt
supporting_text: Reaction=cortisone + NADPH + H(+) = cortisol + NADP(+);
- term:
id: GO:0102196
label: cortisol dehydrogenase (NADP+) activity
evidence_type: IEA
original_reference_id: GO_REF:0000116
qualifier: enables
review:
summary: RHEA-based electronic annotation (RHEA:68616, cortisone + NADPH = cortisol +
NADP(+)) capturing the physiologically dominant reductive reaction of HSD11B1, the
regeneration of active cortisol from cortisone. This is a specific and accurate
representation of the core in-vivo function.
action: ACCEPT
reason: Specific, biologically accurate term for the enzyme's predominant in-vivo reductase
reaction (cortisone to cortisol); complements the broader 11beta-HSD activity term.
supported_by:
- reference_id: file:human/HSD11B1/HSD11B1-uniprot.txt
supporting_text: Reaction=cortisone + NADPH + H(+) = cortisol + NADP(+);
- reference_id: PMID:15513927
supporting_text: ER-localized membrane protein that catalyzes the interconversion of cortisone
- term:
id: GO:0005789
label: endoplasmic reticulum membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-194023
qualifier: located_in
review:
summary: Reactome-asserted ER-membrane localization for the HSD11B1-containing reaction.
Consistent with all other localization evidence for this enzyme.
action: ACCEPT
reason: Correct core localization, supported by experimental and phylogenetic evidence.
supported_by:
- reference_id: PMID:10497248
supporting_text: localization of both 11beta-HSD1 and
- term:
id: GO:0005789
label: endoplasmic reticulum membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9757706
qualifier: located_in
review:
summary: Reactome-asserted ER-membrane localization for a hepatic HSD11B1 reaction
(prednisone to prednisolone reduction). Consistent with all other localization evidence.
action: ACCEPT
reason: Correct core localization, supported by experimental and phylogenetic evidence.
supported_by:
- reference_id: PMID:10497248
supporting_text: the catalytic domain containing the C terminus is protruding into the ER
- term:
id: GO:0005789
label: endoplasmic reticulum membrane
evidence_type: IDA
original_reference_id: PMID:10497248
qualifier: located_in
review:
summary: Direct experimental evidence (fluorescence microscopy and protease-protection
assays) localizing 11beta-HSD1 to the ER membrane, with the catalytic C-terminal domain
protruding into the ER lumen and the N-terminus cytoplasmic (single-pass type II membrane
topology). This anchors the core localization.
action: ACCEPT
reason: High-quality direct experimental evidence for the core ER-membrane localization.
supported_by:
- reference_id: PMID:10497248
supporting_text: the N terminus of 11beta-HSD1 is cytoplasmic,
- reference_id: PMID:10497248
supporting_text: the catalytic domain containing the C terminus is protruding into the ER
- term:
id: GO:0042803
label: protein homodimerization activity
evidence_type: IDA
original_reference_id: PMID:15513927
qualifier: enables
review:
summary: Crystallographic evidence that human 11beta-HSD1 assembles as a homo-oligomer;
the structures show the C-termini of subunits converging to form an oligomerization motif.
UniProt records the enzyme as a homodimer. The homodimerization is genuine but is a
structural/quaternary property rather than the informative core molecular function.
action: ACCEPT
reason: Homodimerization is directly demonstrated by crystal structures and recorded by
UniProt; a real molecular property, kept but not the core catalytic function.
supported_by:
- reference_id: PMID:15513927
supporting_text: four 11beta-HSD1 C termini converge to form an as yet
- reference_id: file:human/HSD11B1/HSD11B1-uniprot.txt
supporting_text: "SUBUNIT: Homodimer."
- term:
id: GO:0042803
label: protein homodimerization activity
evidence_type: IDA
original_reference_id: PMID:17919905
qualifier: enables
review:
summary: X-ray co-crystal structure of 11beta-HSD1 (in complex with NADP and an inhibitor)
supporting the oligomeric assembly of the enzyme. Consistent with the UniProt homodimer
annotation.
action: ACCEPT
reason: Structural evidence supports homodimerization; genuine quaternary structure, retained
as a non-core property.
supported_by:
- reference_id: PMID:17919905
supporting_text: The binding mode was determined through the X-ray co-crystal
- reference_id: file:human/HSD11B1/HSD11B1-uniprot.txt
supporting_text: "SUBUNIT: Homodimer."
- term:
id: GO:0042803
label: protein homodimerization activity
evidence_type: IDA
original_reference_id: PMID:18069989
qualifier: enables
review:
summary: X-ray crystallographic characterization of an orally active 11beta-HSD1 inhibitor
complex, contributing structural support for the homodimeric assembly of the enzyme, as
recorded by UniProt.
action: ACCEPT
reason: Structural evidence supports homodimerization; retained as a real non-core property.
supported_by:
- reference_id: file:human/HSD11B1/HSD11B1-uniprot.txt
supporting_text: "SUBUNIT: Homodimer."
- term:
id: GO:0042803
label: protein homodimerization activity
evidence_type: IDA
original_reference_id: PMID:18485702
qualifier: enables
review:
summary: X-ray crystal structure of 11beta-HSD1 in complex with NADP and an inhibitor,
contributing structural evidence consistent with the homodimeric assembly recorded by
UniProt.
action: ACCEPT
reason: Structural evidence supports homodimerization; retained as a real non-core property.
supported_by:
- reference_id: file:human/HSD11B1/HSD11B1-uniprot.txt
supporting_text: "SUBUNIT: Homodimer."
- term:
id: GO:0042803
label: protein homodimerization activity
evidence_type: IDA
original_reference_id: PMID:18553955
qualifier: enables
review:
summary: Crystallographic study of benzamide inhibitor complexes of 11beta-HSD1,
contributing structural support for the enzyme's homodimeric assembly recorded by UniProt.
action: ACCEPT
reason: Structural evidence supports homodimerization; retained as a real non-core property.
supported_by:
- reference_id: file:human/HSD11B1/HSD11B1-uniprot.txt
supporting_text: "SUBUNIT: Homodimer."
- term:
id: GO:0042803
label: protein homodimerization activity
evidence_type: IDA
original_reference_id: PMID:19217779
qualifier: enables
review:
summary: Crystallographic study of piperidyl benzamide inhibitor complexes of 11beta-HSD1,
contributing structural support for the enzyme's homodimeric assembly recorded by UniProt.
action: ACCEPT
reason: Structural evidence supports homodimerization; retained as a real non-core property.
supported_by:
- reference_id: file:human/HSD11B1/HSD11B1-uniprot.txt
supporting_text: "SUBUNIT: Homodimer."
- term:
id: GO:0050661
label: NADP binding
evidence_type: IDA
original_reference_id: PMID:15513927
qualifier: enables
review:
summary: NADP(H) is the obligate cofactor of 11beta-HSD1, and crystal structures were solved
as ternary complexes containing NADP. NADP binding is a genuine molecular function but is
a cofactor-binding aspect of the catalytic mechanism rather than the informative core MF.
action: KEEP_AS_NON_CORE
reason: Cofactor binding is real and structurally demonstrated but subsidiary to the
dehydrogenase activity, which is the core function.
supported_by:
- reference_id: PMID:15513927
supporting_text: two ternary complexes of 11beta-HSD1
- reference_id: file:human/HSD11B1/HSD11B1-uniprot.txt
supporting_text: cosubstrate NADPH
- term:
id: GO:0050661
label: NADP binding
evidence_type: IDA
original_reference_id: PMID:17919905
qualifier: enables
review:
summary: X-ray co-crystal structure with NADP demonstrating cofactor binding. Genuine but
subsidiary to the core dehydrogenase activity.
action: KEEP_AS_NON_CORE
reason: Structurally demonstrated cofactor binding, retained as a non-core molecular function.
supported_by:
- reference_id: PMID:17919905
supporting_text: The binding mode was determined through the X-ray co-crystal
- term:
id: GO:0050661
label: NADP binding
evidence_type: IDA
original_reference_id: PMID:18069989
qualifier: enables
review:
summary: Structural characterization of an 11beta-HSD1 complex demonstrating NADP cofactor
binding. Genuine but subsidiary to the core dehydrogenase activity.
action: KEEP_AS_NON_CORE
reason: Structurally demonstrated cofactor binding, retained as a non-core molecular function.
supported_by:
- reference_id: file:human/HSD11B1/HSD11B1-uniprot.txt
supporting_text: cosubstrate NADPH
- term:
id: GO:0050661
label: NADP binding
evidence_type: IDA
original_reference_id: PMID:18485702
qualifier: enables
review:
summary: Crystal structure of 11beta-HSD1 in complex with NADP demonstrating cofactor
binding. Genuine but subsidiary to the core dehydrogenase activity.
action: KEEP_AS_NON_CORE
reason: Structurally demonstrated cofactor binding, retained as a non-core molecular function.
supported_by:
- reference_id: file:human/HSD11B1/HSD11B1-uniprot.txt
supporting_text: cosubstrate NADPH
- term:
id: GO:0050661
label: NADP binding
evidence_type: IDA
original_reference_id: PMID:18553955
qualifier: enables
review:
summary: Crystallographic evidence of NADP cofactor binding by 11beta-HSD1. Genuine but
subsidiary to the core dehydrogenase activity.
action: KEEP_AS_NON_CORE
reason: Structurally demonstrated cofactor binding, retained as a non-core molecular function.
supported_by:
- reference_id: file:human/HSD11B1/HSD11B1-uniprot.txt
supporting_text: cosubstrate NADPH
- term:
id: GO:0050661
label: NADP binding
evidence_type: IDA
original_reference_id: PMID:19217779
qualifier: enables
review:
summary: Crystallographic evidence of NADP cofactor binding by 11beta-HSD1. Genuine but
subsidiary to the core dehydrogenase activity.
action: KEEP_AS_NON_CORE
reason: Structurally demonstrated cofactor binding, retained as a non-core molecular function.
supported_by:
- reference_id: file:human/HSD11B1/HSD11B1-uniprot.txt
supporting_text: cosubstrate NADPH
- term:
id: GO:0070524
label: 11-beta-hydroxysteroid dehydrogenase (NADP+) activity
evidence_type: IDA
original_reference_id: PMID:10497248
qualifier: enables
review:
summary: Direct experimental measurement of 11beta-HSD1 enzymatic activity (glucocorticoid
interconversion with defined kinetics for corticosterone and 11-dehydrocorticosterone) in
the study that also established ER-membrane topology. Supports the core catalytic function.
action: ACCEPT
reason: Direct experimental evidence for the core 11beta-HSD (NADP+) activity.
supported_by:
- reference_id: PMID:10497248
supporting_text: regulate the ratio of
- reference_id: PMID:10497248
supporting_text: active endogenous glucocorticoids to their inactive keto-metabolites
- term:
id: GO:0070524
label: 11-beta-hydroxysteroid dehydrogenase (NADP+) activity
evidence_type: IDA
original_reference_id: PMID:15152005
qualifier: enables
review:
summary: Direct experimental evidence that the ER-lumen-oriented 11beta-HSD1 carries out
efficient glucocorticoid oxidoreduction (cortisol oxidation shown to depend on luminal
orientation), establishing the core catalytic activity and its pre-receptor role.
action: ACCEPT
reason: Direct experimental evidence for the core 11beta-HSD (NADP+) activity.
supported_by:
- reference_id: PMID:15152005
supporting_text: 11beta-HSD1) exerts an important pre-receptor function
- reference_id: PMID:15152005
supporting_text: essential for efficient oxidation of cortisol.
- term:
id: GO:0070524
label: 11-beta-hydroxysteroid dehydrogenase (NADP+) activity
evidence_type: IDA
original_reference_id: PMID:17070044
qualifier: enables
review:
summary: Enzyme-inhibition study demonstrating 11beta-HSD1 catalytic activity in liver, fat
and brain (target of adamantane sulfone/sulfonamide inhibitors), consistent with the core
dehydrogenase activity of the enzyme.
action: ACCEPT
reason: Experimental evidence of the core enzymatic activity via inhibitor-based assays.
supported_by:
- reference_id: PMID:17070044
supporting_text: strongly inhibit liver, fat, and brain HSD1
- term:
id: GO:0070524
label: 11-beta-hydroxysteroid dehydrogenase (NADP+) activity
evidence_type: IDA
original_reference_id: PMID:17919905
qualifier: enables
review:
summary: Enzyme-inhibition and X-ray co-crystal study confirming the 11beta-HSD1 catalytic
activity used as the assay target, consistent with the core dehydrogenase function.
action: ACCEPT
reason: Experimental evidence of the core enzymatic activity in an inhibitor/structure study.
supported_by:
- reference_id: PMID:17919905
supporting_text: 2-anilinothiazolones were prepared as inhibitors of
- term:
id: GO:0016020
label: membrane
evidence_type: HDA
original_reference_id: PMID:19946888
qualifier: located_in
review:
summary: High-throughput mass-spectrometry membrane-proteome study of an NK-like cell line
that identified HSD11B1 among ~1843 proteins. "Membrane" is a generic parent of the
specific and well-supported ER-membrane localization, and the annotation derives from a
broad proteomics screen rather than targeted localization.
action: MARK_AS_OVER_ANNOTATED
reason: Not wrong (the enzyme is a membrane protein) but uninformatively general relative to
the specific ER membrane localization; sourced from a high-throughput proteomics dataset.
supported_by:
- reference_id: PMID:19946888
supporting_text: identified 1843 proteins with high confidence scores
core_functions:
- description: NADP(H)-dependent 11-beta-hydroxysteroid dehydrogenase / oxoreductase that
interconverts inactive and active glucocorticoids, acting predominantly in vivo as a
reductase converting cortisone to cortisol at the ER membrane, thereby amplifying
pre-receptor glucocorticoid action.
molecular_function:
id: GO:0070524
label: 11-beta-hydroxysteroid dehydrogenase (NADP+) activity
directly_involved_in:
- id: GO:0008211
label: glucocorticoid metabolic process
locations:
- id: GO:0005789
label: endoplasmic reticulum membrane
supported_by:
- reference_id: file:human/HSD11B1/HSD11B1-uniprot.txt
supporting_text: Reaction=cortisone + NADPH + H(+) = cortisol + NADP(+);
- reference_id: PMID:15513927
supporting_text: ER-localized membrane protein that catalyzes the interconversion of cortisone
references:
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location
vocabulary mapping, accompanied by conservative changes to GO terms applied by
UniProt
findings: []
- id: GO_REF:0000116
title: Automatic Gene Ontology annotation based on Rhea mapping
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: file:human/HSD11B1/HSD11B1-uniprot.txt
title: UniProtKB entry P28845 (DHI1_HUMAN), 11-beta-hydroxysteroid dehydrogenase 1
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Curated UniProtKB record; source of catalytic-activity, subunit, subcellular
location and function statements used as file-quote support.
- id: PMID:10497248
title: The N-terminal anchor sequences of 11beta-hydroxysteroid dehydrogenases determine
their orientation in the endoplasmic reticulum membrane.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Establishes ER-membrane localization and single-pass type II topology with
lumen-facing catalytic domain; also reports enzymatic activity. Abstract-only in cache.
- id: PMID:15152005
title: Appropriate function of 11beta-hydroxysteroid dehydrogenase type 1 in the
endoplasmic reticulum lumen is dependent on its N-terminal region sharing similar
topological determinants with 50-kDa esterase.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Supports pre-receptor glucocorticoid function, ER-lumen orientation dependence
of activity, and 7-ketocholesterol metabolism. Abstract-only in cache.
- id: PMID:15513927
title: Conformational flexibility in crystal structures of human 11beta-hydroxysteroid
dehydrogenase type I provide insights into glucocorticoid interconversion and
enzyme regulation.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Crystal structures establishing cortisone/cortisol interconversion,
oligomerization motif, and adipose-tissue disease relevance. Abstract-only in cache.
- id: PMID:17070044
title: Adamantane sulfone and sulfonamide 11-beta-HSD1 Inhibitors.
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Inhibitor study confirming 11beta-HSD1 activity in liver, fat and brain.
Abstract-only in cache.
- id: PMID:17919905
title: The discovery of 2-anilinothiazolones as 11beta-HSD1 inhibitors.
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Inhibitor/X-ray co-crystal study confirming enzymatic activity and structure.
Abstract-only in cache.
- id: PMID:18069989
title: Structural characterization and pharmacodynamic effects of an orally active
11beta-hydroxysteroid dehydrogenase type 1 inhibitor.
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Structural inhibitor study; supports homodimeric assembly. Abstract-only in cache.
- id: PMID:18485702
title: Pyridine amides as potent and selective inhibitors of 11beta-hydroxysteroid
dehydrogenase type 1.
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Structural inhibitor study; supports homodimeric assembly. Abstract-only in cache.
- id: PMID:18553955
title: Discovery of novel, potent benzamide inhibitors of 11beta-hydroxysteroid
dehydrogenase type 1 (11beta-HSD1) exhibiting oral activity in an enzyme inhibition
ex vivo model.
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Structural inhibitor study; supports homodimeric assembly. Abstract-only in cache.
- id: PMID:19217779
title: Discovery and optimization of piperidyl benzamide derivatives as a novel
class of 11beta-HSD1 inhibitors.
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Structural inhibitor study; supports homodimeric assembly. Abstract-only in cache.
- id: PMID:19946888
title: Defining the membrane proteome of NK cells.
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: High-throughput membrane-proteome MS screen; source of the generic 'membrane'
HDA annotation, not targeted localization evidence.
- id: Reactome:R-HSA-194023
title: HSD11B2,HSD11B1 dimer oxidise CORT to COR
findings: []
- id: Reactome:R-HSA-9757706
title: HSD11B1 hydrogenates PREDN to PREDL in hepatic cell
findings: []