Interleukin-15 is a cytokine that plays a major role in the development of inflammatory and protective immune responses. It stimulates proliferation of natural killer cells, T-cells, and B-cells, and promotes secretion of cytokines. Unlike most cytokines, IL15 is expressed in association with its high affinity receptor IL15RA on the cell surface (trans-presentation) and signals through the IL2RB/IL2RG receptor complex, triggering JAK1/JAK3 phosphorylation and STAT3/STAT5 activation. Two isoforms exist: IL15-S48AA (secreted) and IL15-S21AA (intracellular, localized to cytoplasm and nucleus).
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0001819
positive regulation of cytokine production
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: ACCEPT: IL15 stimulates cytokine production. UniProt states IL15 "promotes the secretion of several cytokines" and "induces the production of IL8 and monocyte chemotactic protein 1/CCL2" in monocytes.
|
|
GO:0050778
positive regulation of immune response
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: ACCEPT: IL15 positively regulates immune responses by stimulating NK cells, T-cells, and B-cells. UniProt: "plays a major role in the development of inflammatory and protective immune responses to microbial invaders and parasites."
|
|
GO:0005125
cytokine activity
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: ACCEPT: IL15 is definitively a cytokine. UniProt RecName is "Interleukin-15" and function description begins "Cytokine that plays a major role..."
|
|
GO:0005615
extracellular space
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: ACCEPT: IL15 (isoform S48AA) is secreted. UniProt SUBCELLULAR LOCATION states "Isoform IL15-S48AA: Secreted."
|
|
GO:0042102
positive regulation of T cell proliferation
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: ACCEPT: IL15 stimulates T cell proliferation. UniProt: "Stimulates the proliferation of natural killer cells, T-cells and B-cells."
|
|
GO:0042119
neutrophil activation
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: ACCEPT: IL15 activates neutrophils. PMID:15123770 cited in UniProt shows IL15 enhances neutrophil phagocytosis.
|
|
GO:0005125
cytokine activity
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: ACCEPT: Redundant with IBA annotation but correct. IL15 has cytokine activity.
|
|
GO:0005126
cytokine receptor binding
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: ACCEPT: IL15 binds cytokine receptors. UniProt INTERACTION section shows IL15 binds IL15RA and IL2RB. This is core to its function.
|
|
GO:0005576
extracellular region
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: ACCEPT: IL15 is found in extracellular region when secreted (isoform S48AA).
|
|
GO:0005615
extracellular space
|
IEA
GO_REF:0000043 |
ACCEPT |
Summary: ACCEPT: Redundant but correct. Secreted isoform found in extracellular space.
|
|
GO:0005634
nucleus
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: ACCEPT: UniProt states "Isoform IL15-S21AA: Cytoplasm. Nucleus." The intracellular isoform localizes to the nucleus.
|
|
GO:0005737
cytoplasm
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: ACCEPT: UniProt states "Isoform IL15-S21AA: Cytoplasm." The intracellular isoform localizes to cytoplasm.
|
|
GO:0006955
immune response
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: ACCEPT: IL15 functions in immune response. UniProt: "plays a major role in the development of inflammatory and protective immune responses."
|
|
GO:0008284
positive regulation of cell population proliferation
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: KEEP_AS_NON_CORE: This is true but overly general. IL15 stimulates proliferation of specific immune cell types (NK, T, B cells), not general cell proliferation. More specific terms are preferred.
|
|
GO:0005515
protein binding
|
IPI
PMID:16284400 Soluble interleukin-15 receptor alpha (IL-15R alpha)-sushi a... |
MARK AS OVER ANNOTATED |
Summary: MARK_AS_OVER_ANNOTATED: "Protein binding" is uninformative. The specific interaction (IL15 binds IL15RA) is better captured by "cytokine receptor binding" (GO:0005126). Per curation guidelines, avoid generic "protein binding."
Supporting Evidence:
PMID:16284400
Nov 11. Soluble interleukin-15 receptor alpha (IL-15R alpha)-sushi as a selective and potent agonist of IL-15 action through IL-15R beta/gamma.
|
|
GO:0005515
protein binding
|
IPI
PMID:23104097 Mechanistic and structural insight into the functional dicho... |
MARK AS OVER ANNOTATED |
Summary: MARK_AS_OVER_ANNOTATED: Same as above - "protein binding" is uninformative. The IL15-receptor interaction is better captured by specific MF terms.
Supporting Evidence:
PMID:23104097
Mechanistic and structural insight into the functional dichotomy between IL-2 and IL-15.
|
|
GO:0005515
protein binding
|
IPI
PMID:25416956 A proteome-scale map of the human interactome network. |
MARK AS OVER ANNOTATED |
Summary: MARK_AS_OVER_ANNOTATED: High-throughput interactome study. Generic protein binding is not informative for cytokine function annotation.
Supporting Evidence:
PMID:25416956
A proteome-scale map of the human interactome network.
|
|
GO:0120163
negative regulation of cold-induced thermogenesis
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: KEEP_AS_NON_CORE: Transferred from mouse. PMID:27684068 shows IL15 deficiency enhances thermogenic function of adipose tissue. This is a secondary/pleiotropic effect, not a core function of IL15 as a cytokine.
|
|
GO:0005654
nucleoplasm
|
IDA
GO_REF:0000052 |
ACCEPT |
Summary: ACCEPT: HPA immunofluorescence data. Consistent with UniProt statement that isoform IL15-S21AA localizes to nucleus.
|
|
GO:0016607
nuclear speck
|
IDA
GO_REF:0000052 |
ACCEPT |
Summary: ACCEPT: HPA immunofluorescence data showing nuclear speck localization. More specific than general nucleus annotation.
|
|
GO:0007259
cell surface receptor signaling pathway via JAK-STAT
|
NAS
PMID:23104097 Mechanistic and structural insight into the functional dicho... |
ACCEPT |
Summary: ACCEPT: Core pathway for IL15 signaling. UniProt explicitly states IL15 "triggers the phosphorylation of JAK1 and JAK3 and the recruitment and subsequent phosphorylation of...STAT3 and STAT5."
Supporting Evidence:
PMID:23104097
Mechanistic and structural insight into the functional dichotomy between IL-2 and IL-15.
|
|
GO:0035723
interleukin-15-mediated signaling pathway
|
NAS
PMID:23104097 Mechanistic and structural insight into the functional dicho... |
ACCEPT |
Summary: ACCEPT: This IS the core signaling pathway for IL15. The gene product is literally the ligand that initiates this pathway.
Supporting Evidence:
PMID:23104097
Mechanistic and structural insight into the functional dichotomy between IL-2 and IL-15.
|
|
GO:0043066
negative regulation of apoptotic process
|
NAS
PMID:10627470 Expression of functional interleukin-15 receptor and autocri... |
KEEP AS NON CORE |
Summary: KEEP_AS_NON_CORE: PMID:10627470 shows IL15 promotes multiple myeloma cell survival. Anti-apoptotic effects are downstream of cytokine signaling, not a core function. May be context-dependent.
Supporting Evidence:
PMID:10627470
Expression of functional interleukin-15 receptor and autocrine production of interleukin-15 as mechanisms of tumor propagation in multiple myeloma.
|
|
GO:0043410
positive regulation of MAPK cascade
|
NAS
PMID:23104097 Mechanistic and structural insight into the functional dicho... |
ACCEPT |
Summary: ACCEPT: IL15 activates MAPK in addition to JAK-STAT. This is part of its signaling mechanism.
Supporting Evidence:
PMID:23104097
Mechanistic and structural insight into the functional dichotomy between IL-2 and IL-15.
|
|
GO:0005125
cytokine activity
|
IDA
PMID:9097905 Role of IL-15 in HIV-1-associated hypergammaglobulinaemia. |
ACCEPT |
Summary: ACCEPT: Direct experimental evidence for cytokine activity. PMID:9097905 demonstrates IL15 function in HIV context.
Supporting Evidence:
PMID:9097905
Role of IL-15 in HIV-1-associated hypergammaglobulinaemia.
|
|
GO:0005615
extracellular space
|
IDA
PMID:9097905 Role of IL-15 in HIV-1-associated hypergammaglobulinaemia. |
ACCEPT |
Summary: ACCEPT: Direct evidence IL15 is secreted and found extracellularly.
Supporting Evidence:
PMID:9097905
Role of IL-15 in HIV-1-associated hypergammaglobulinaemia.
|
|
GO:0035723
interleukin-15-mediated signaling pathway
|
IDA
PMID:9097905 Role of IL-15 in HIV-1-associated hypergammaglobulinaemia. |
ACCEPT |
Summary: ACCEPT: Direct evidence for IL15-mediated signaling.
Supporting Evidence:
PMID:9097905
Role of IL-15 in HIV-1-associated hypergammaglobulinaemia.
|
|
GO:0030225
macrophage differentiation
|
IDA
PMID:24942581 CD4 ligation on human blood monocytes triggers macrophage di... |
KEEP AS NON CORE |
Summary: KEEP_AS_NON_CORE: PMID:24942581 shows CD4 ligation on monocytes triggers macrophage differentiation enhanced by IL15. This is a downstream effect of IL15 signaling, not a core function.
Supporting Evidence:
PMID:24942581
CD4 ligation on human blood monocytes triggers macrophage differentiation and enhances HIV infection.
|
|
GO:0035723
interleukin-15-mediated signaling pathway
|
IDA
PMID:15123770 Interleukin-15 enhances human neutrophil phagocytosis by a S... |
ACCEPT |
Summary: ACCEPT: Direct evidence from study on IL15 signaling in neutrophils.
Supporting Evidence:
PMID:15123770
Interleukin-15 enhances human neutrophil phagocytosis by a Syk-dependent mechanism: importance of the IL-15Ralpha chain.
|
|
GO:0050731
positive regulation of peptidyl-tyrosine phosphorylation
|
IDA
PMID:15123770 Interleukin-15 enhances human neutrophil phagocytosis by a S... |
ACCEPT |
Summary: ACCEPT: IL15 positively regulates tyrosine phosphorylation through JAK-STAT pathway activation. This is mechanistically correct - IL15 binding triggers JAK kinase activation which phosphorylates STATs.
Supporting Evidence:
PMID:15123770
Interleukin-15 enhances human neutrophil phagocytosis by a Syk-dependent mechanism: importance of the IL-15Ralpha chain.
|
|
GO:0050766
positive regulation of phagocytosis
|
IDA
PMID:15123770 Interleukin-15 enhances human neutrophil phagocytosis by a S... |
ACCEPT |
Summary: ACCEPT: PMID:15123770 title is "Interleukin-15 enhances human neutrophil phagocytosis." Direct experimental evidence.
Supporting Evidence:
PMID:15123770
Interleukin-15 enhances human neutrophil phagocytosis by a Syk-dependent mechanism: importance of the IL-15Ralpha chain.
|
|
GO:0042119
neutrophil activation
|
IDA
PMID:15123770 Interleukin-15 enhances human neutrophil phagocytosis by a S... |
ACCEPT |
Summary: ACCEPT: PMID:15123770 demonstrates IL15 activates neutrophils (enhances phagocytosis). Consistent with IBA annotation.
Supporting Evidence:
PMID:15123770
Interleukin-15 enhances human neutrophil phagocytosis by a Syk-dependent mechanism: importance of the IL-15Ralpha chain.
|
|
GO:0120163
negative regulation of cold-induced thermogenesis
|
ISS
PMID:27684068 Deficiency of Interleukin-15 Confers Resistance to Obesity b... |
KEEP AS NON CORE |
Summary: KEEP_AS_NON_CORE: Redundant with IEA annotation. Pleiotropic effect via adipose tissue regulation, not core cytokine function.
Supporting Evidence:
PMID:27684068
eCollection 2016. Deficiency of Interleukin-15 Confers Resistance to Obesity by Diminishing Inflammation and Enhancing the Thermogenic Function of Adipose Tissues.
|
|
GO:0005576
extracellular region
|
TAS
Reactome:R-HSA-449115 |
ACCEPT |
Summary: ACCEPT: Reactome pathway shows IL15:IL15RA complex formation. IL15 is found extracellularly.
|
|
GO:0005576
extracellular region
|
TAS
Reactome:R-HSA-8983298 |
ACCEPT |
Summary: ACCEPT: Reactome pathway step. Redundant but correct.
|
|
GO:0005576
extracellular region
|
TAS
Reactome:R-HSA-8983300 |
ACCEPT |
Summary: ACCEPT: Reactome pathway step.
|
|
GO:0005576
extracellular region
|
TAS
Reactome:R-HSA-8983307 |
ACCEPT |
Summary: ACCEPT: Reactome pathway step.
|
|
GO:0005576
extracellular region
|
TAS
Reactome:R-HSA-8983335 |
ACCEPT |
Summary: ACCEPT: Reactome pathway step showing receptor complex translocation.
|
|
GO:0005576
extracellular region
|
TAS
Reactome:R-HSA-8983371 |
ACCEPT |
Summary: ACCEPT: Reactome pathway step.
|
|
GO:0005576
extracellular region
|
TAS
Reactome:R-HSA-8983374 |
ACCEPT |
Summary: ACCEPT: Reactome pathway step.
|
|
GO:0005576
extracellular region
|
TAS
Reactome:R-HSA-8983378 |
ACCEPT |
Summary: ACCEPT: Reactome pathway step.
|
|
GO:0005576
extracellular region
|
TAS
Reactome:R-HSA-8983384 |
ACCEPT |
Summary: ACCEPT: Reactome pathway step.
|
|
GO:0005768
endosome
|
TAS
Reactome:R-HSA-8983335 |
ACCEPT |
Summary: ACCEPT: Reactome shows IL15 receptor complex translocates to endosome during signaling.
|
|
GO:0035723
interleukin-15-mediated signaling pathway
|
IDA
PMID:24942581 CD4 ligation on human blood monocytes triggers macrophage di... |
ACCEPT |
Summary: ACCEPT: Direct evidence for IL15-mediated signaling pathway.
Supporting Evidence:
PMID:24942581
CD4 ligation on human blood monocytes triggers macrophage differentiation and enhances HIV infection.
|
|
GO:0007260
tyrosine phosphorylation of STAT protein
|
IDA
PMID:12244150 IL-21 up-regulates the expression of genes associated with i... |
MODIFY |
Summary: OVER-ANNOTATION: IL15 is a cytokine that INDUCES STAT phosphorylation via the JAK-STAT signaling pathway, but does NOT catalyze the phosphorylation reaction itself. Cytokines are signaling ligands that trigger downstream JAK kinases to phosphorylate STAT proteins. IL15 has no kinase activity. The appropriate term is GO:0042531 "positive regulation of tyrosine phosphorylation of STAT protein".
Proposed replacements:
positive regulation of tyrosine phosphorylation of STAT protein
Supporting Evidence:
PMID:12244150
IL-21 up-regulates the expression of genes associated with innate immunity and Th1 response.
|
|
GO:0032740
positive regulation of interleukin-17 production
|
IDA
PMID:16482511 Divergent effects of IL-12 and IL-23 on the production of IL... |
ACCEPT |
Summary: ACCEPT: IL15 promotes IL-17 production. This is part of its cytokine production stimulation function.
Supporting Evidence:
PMID:16482511
Divergent effects of IL-12 and IL-23 on the production of IL-17 by human T cells.
|
|
GO:0034105
positive regulation of tissue remodeling
|
IC
PMID:16482511 Divergent effects of IL-12 and IL-23 on the production of IL... |
KEEP AS NON CORE |
Summary: KEEP_AS_NON_CORE: Inferred from GO:0032740 (IL-17 production). Tissue remodeling is a downstream consequence of cytokine signaling, several steps removed from IL15's direct activity.
Supporting Evidence:
PMID:16482511
Divergent effects of IL-12 and IL-23 on the production of IL-17 by human T cells.
|
|
GO:0050729
positive regulation of inflammatory response
|
IC
PMID:16482511 Divergent effects of IL-12 and IL-23 on the production of IL... |
ACCEPT |
Summary: ACCEPT: Inferred from IL-17 production. IL15 promotes inflammation through multiple mechanisms including cytokine induction. UniProt states IL15 is involved in "inflammatory...immune responses."
Supporting Evidence:
PMID:16482511
Divergent effects of IL-12 and IL-23 on the production of IL-17 by human T cells.
|
|
GO:0005576
extracellular region
|
NAS
PMID:14718574 The human plasma proteome: a nonredundant list developed by ... |
ACCEPT |
Summary: ACCEPT: Human plasma proteome study detected IL15 extracellularly.
Supporting Evidence:
PMID:14718574
Epub 2004 Jan 12. The human plasma proteome: a nonredundant list developed by combination of four separate sources.
|
|
GO:0005615
extracellular space
|
TAS
PMID:10851076 Altered natural killer cell differentiation in CD34+ progeni... |
ACCEPT |
Summary: ACCEPT: IL15 found in extracellular space.
Supporting Evidence:
PMID:10851076
Altered natural killer cell differentiation in CD34+ progenitors from chronic myeloid leukemia patients.
|
|
GO:0005737
cytoplasm
|
TAS
PMID:10851076 Altered natural killer cell differentiation in CD34+ progeni... |
ACCEPT |
Summary: ACCEPT: IL15-S21AA isoform is cytoplasmic per UniProt.
Supporting Evidence:
PMID:10851076
Altered natural killer cell differentiation in CD34+ progenitors from chronic myeloid leukemia patients.
|
|
GO:0005768
endosome
|
TAS
PMID:10851076 Altered natural killer cell differentiation in CD34+ progeni... |
ACCEPT |
Summary: ACCEPT: IL15 traffics through endosomal pathway.
Supporting Evidence:
PMID:10851076
Altered natural killer cell differentiation in CD34+ progenitors from chronic myeloid leukemia patients.
|
|
GO:0005794
Golgi apparatus
|
TAS
PMID:10851076 Altered natural killer cell differentiation in CD34+ progeni... |
ACCEPT |
Summary: ACCEPT: IL15 transits through Golgi during secretory pathway.
Supporting Evidence:
PMID:10851076
Altered natural killer cell differentiation in CD34+ progenitors from chronic myeloid leukemia patients.
|
|
GO:0006955
immune response
|
TAS
PMID:8178155 Cloning of a T cell growth factor that interacts with the be... |
ACCEPT |
Summary: ACCEPT: Original cloning paper. IL15 functions in immune response.
Supporting Evidence:
PMID:8178155
Cloning of a T cell growth factor that interacts with the beta chain of the interleukin-2 receptor.
|
|
GO:0007165
signal transduction
|
TAS
PMID:8178155 Cloning of a T cell growth factor that interacts with the be... |
KEEP AS NON CORE |
Summary: KEEP_AS_NON_CORE: Very general term. IL15 does participate in signal transduction but more specific pathway terms are preferred.
Supporting Evidence:
PMID:8178155
Cloning of a T cell growth factor that interacts with the beta chain of the interleukin-2 receptor.
|
|
GO:0007267
cell-cell signaling
|
TAS
PMID:7759105 Chromosomal assignment and genomic structure of Il15. |
ACCEPT |
Summary: ACCEPT: IL15 mediates cell-cell signaling via trans-presentation (IL15 on one cell presents to receptors on another cell).
Supporting Evidence:
PMID:7759105
Chromosomal assignment and genomic structure of Il15.
|
|
GO:0008284
positive regulation of cell population proliferation
|
TAS
PMID:10851076 Altered natural killer cell differentiation in CD34+ progeni... |
KEEP AS NON CORE |
Summary: KEEP_AS_NON_CORE: True but overly general. IL15 stimulates specific immune cell proliferation. More specific terms preferred.
Supporting Evidence:
PMID:10851076
Altered natural killer cell differentiation in CD34+ progenitors from chronic myeloid leukemia patients.
|
id: P40933
gene_symbol: IL15
product_type: PROTEIN
status: IN_PROGRESS
taxon:
id: NCBITaxon:9606
label: Homo sapiens
aliases:
- IL-15
description: >-
Interleukin-15 is a cytokine that plays a major role in the development of
inflammatory and protective immune responses. It stimulates proliferation
of natural killer cells, T-cells, and B-cells, and promotes secretion of
cytokines. Unlike most cytokines, IL15 is expressed in association with its
high affinity receptor IL15RA on the cell surface (trans-presentation) and
signals through the IL2RB/IL2RG receptor complex, triggering JAK1/JAK3
phosphorylation and STAT3/STAT5 activation. Two isoforms exist: IL15-S48AA
(secreted) and IL15-S21AA (intracellular, localized to cytoplasm and nucleus).
existing_annotations:
# === IBA (Phylogenetic) Annotations ===
- term:
id: GO:0001819
label: positive regulation of cytokine production
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
ACCEPT: IL15 stimulates cytokine production. UniProt states IL15 "promotes
the secretion of several cytokines" and "induces the production of IL8 and
monocyte chemotactic protein 1/CCL2" in monocytes.
action: ACCEPT
- term:
id: GO:0050778
label: positive regulation of immune response
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
ACCEPT: IL15 positively regulates immune responses by stimulating NK cells,
T-cells, and B-cells. UniProt: "plays a major role in the development of
inflammatory and protective immune responses to microbial invaders and parasites."
action: ACCEPT
- term:
id: GO:0005125
label: cytokine activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
ACCEPT: IL15 is definitively a cytokine. UniProt RecName is "Interleukin-15"
and function description begins "Cytokine that plays a major role..."
action: ACCEPT
- term:
id: GO:0005615
label: extracellular space
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
ACCEPT: IL15 (isoform S48AA) is secreted. UniProt SUBCELLULAR LOCATION
states "Isoform IL15-S48AA: Secreted."
action: ACCEPT
- term:
id: GO:0042102
label: positive regulation of T cell proliferation
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
ACCEPT: IL15 stimulates T cell proliferation. UniProt: "Stimulates the
proliferation of natural killer cells, T-cells and B-cells."
action: ACCEPT
- term:
id: GO:0042119
label: neutrophil activation
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
ACCEPT: IL15 activates neutrophils. PMID:15123770 cited in UniProt shows
IL15 enhances neutrophil phagocytosis.
action: ACCEPT
# === IEA (Electronic) Annotations ===
- term:
id: GO:0005125
label: cytokine activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: >-
ACCEPT: Redundant with IBA annotation but correct. IL15 has cytokine activity.
action: ACCEPT
- term:
id: GO:0005126
label: cytokine receptor binding
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: >-
ACCEPT: IL15 binds cytokine receptors. UniProt INTERACTION section shows
IL15 binds IL15RA and IL2RB. This is core to its function.
action: ACCEPT
- term:
id: GO:0005576
label: extracellular region
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: >-
ACCEPT: IL15 is found in extracellular region when secreted (isoform S48AA).
action: ACCEPT
- term:
id: GO:0005615
label: extracellular space
evidence_type: IEA
original_reference_id: GO_REF:0000043
review:
summary: >-
ACCEPT: Redundant but correct. Secreted isoform found in extracellular space.
action: ACCEPT
- term:
id: GO:0005634
label: nucleus
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: >-
ACCEPT: UniProt states "Isoform IL15-S21AA: Cytoplasm. Nucleus." The
intracellular isoform localizes to the nucleus.
action: ACCEPT
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: >-
ACCEPT: UniProt states "Isoform IL15-S21AA: Cytoplasm." The intracellular
isoform localizes to cytoplasm.
action: ACCEPT
- term:
id: GO:0006955
label: immune response
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: >-
ACCEPT: IL15 functions in immune response. UniProt: "plays a major role in
the development of inflammatory and protective immune responses."
action: ACCEPT
- term:
id: GO:0008284
label: positive regulation of cell population proliferation
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: >-
KEEP_AS_NON_CORE: This is true but overly general. IL15 stimulates
proliferation of specific immune cell types (NK, T, B cells), not general
cell proliferation. More specific terms are preferred.
action: KEEP_AS_NON_CORE
# === IPI (Physical Interaction) Annotations ===
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16284400
review:
summary: >-
MARK_AS_OVER_ANNOTATED: "Protein binding" is uninformative. The specific
interaction (IL15 binds IL15RA) is better captured by "cytokine receptor
binding" (GO:0005126). Per curation guidelines, avoid generic "protein binding."
action: MARK_AS_OVER_ANNOTATED
supported_by:
- reference_id: PMID:16284400
supporting_text: Nov 11. Soluble interleukin-15 receptor alpha (IL-15R
alpha)-sushi as a selective and potent agonist of IL-15 action
through IL-15R beta/gamma.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:23104097
review:
summary: >-
MARK_AS_OVER_ANNOTATED: Same as above - "protein binding" is uninformative.
The IL15-receptor interaction is better captured by specific MF terms.
action: MARK_AS_OVER_ANNOTATED
supported_by:
- reference_id: PMID:23104097
supporting_text: Mechanistic and structural insight into the
functional dichotomy between IL-2 and IL-15.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:25416956
review:
summary: >-
MARK_AS_OVER_ANNOTATED: High-throughput interactome study. Generic protein
binding is not informative for cytokine function annotation.
action: MARK_AS_OVER_ANNOTATED
# === Ensembl/Mouse Orthologue Transfer ===
supported_by:
- reference_id: PMID:25416956
supporting_text: A proteome-scale map of the human interactome
network.
- term:
id: GO:0120163
label: negative regulation of cold-induced thermogenesis
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
KEEP_AS_NON_CORE: Transferred from mouse. PMID:27684068 shows IL15 deficiency
enhances thermogenic function of adipose tissue. This is a secondary/pleiotropic
effect, not a core function of IL15 as a cytokine.
action: KEEP_AS_NON_CORE
# === HPA Subcellular Localization ===
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: IDA
original_reference_id: GO_REF:0000052
review:
summary: >-
ACCEPT: HPA immunofluorescence data. Consistent with UniProt statement that
isoform IL15-S21AA localizes to nucleus.
action: ACCEPT
- term:
id: GO:0016607
label: nuclear speck
evidence_type: IDA
original_reference_id: GO_REF:0000052
review:
summary: >-
ACCEPT: HPA immunofluorescence data showing nuclear speck localization.
More specific than general nucleus annotation.
action: ACCEPT
# === NAS (Non-traceable Author Statement) ===
- term:
id: GO:0007259
label: cell surface receptor signaling pathway via JAK-STAT
evidence_type: NAS
original_reference_id: PMID:23104097
review:
summary: >-
ACCEPT: Core pathway for IL15 signaling. UniProt explicitly states IL15
"triggers the phosphorylation of JAK1 and JAK3 and the recruitment and
subsequent phosphorylation of...STAT3 and STAT5."
action: ACCEPT
supported_by:
- reference_id: PMID:23104097
supporting_text: Mechanistic and structural insight into the
functional dichotomy between IL-2 and IL-15.
- term:
id: GO:0035723
label: interleukin-15-mediated signaling pathway
evidence_type: NAS
original_reference_id: PMID:23104097
review:
summary: >-
ACCEPT: This IS the core signaling pathway for IL15. The gene product is
literally the ligand that initiates this pathway.
action: ACCEPT
supported_by:
- reference_id: PMID:23104097
supporting_text: Mechanistic and structural insight into the
functional dichotomy between IL-2 and IL-15.
- term:
id: GO:0043066
label: negative regulation of apoptotic process
evidence_type: NAS
original_reference_id: PMID:10627470
review:
summary: >-
KEEP_AS_NON_CORE: PMID:10627470 shows IL15 promotes multiple myeloma cell
survival. Anti-apoptotic effects are downstream of cytokine signaling, not
a core function. May be context-dependent.
action: KEEP_AS_NON_CORE
supported_by:
- reference_id: PMID:10627470
supporting_text: Expression of functional interleukin-15 receptor and
autocrine production of interleukin-15 as mechanisms of tumor
propagation in multiple myeloma.
- term:
id: GO:0043410
label: positive regulation of MAPK cascade
evidence_type: NAS
original_reference_id: PMID:23104097
review:
summary: >-
ACCEPT: IL15 activates MAPK in addition to JAK-STAT. This is part of its
signaling mechanism.
action: ACCEPT
# === IDA (Direct Assay) Annotations ===
supported_by:
- reference_id: PMID:23104097
supporting_text: Mechanistic and structural insight into the
functional dichotomy between IL-2 and IL-15.
- term:
id: GO:0005125
label: cytokine activity
evidence_type: IDA
original_reference_id: PMID:9097905
review:
summary: >-
ACCEPT: Direct experimental evidence for cytokine activity. PMID:9097905
demonstrates IL15 function in HIV context.
action: ACCEPT
supported_by:
- reference_id: PMID:9097905
supporting_text: Role of IL-15 in HIV-1-associated
hypergammaglobulinaemia.
- term:
id: GO:0005615
label: extracellular space
evidence_type: IDA
original_reference_id: PMID:9097905
review:
summary: >-
ACCEPT: Direct evidence IL15 is secreted and found extracellularly.
action: ACCEPT
supported_by:
- reference_id: PMID:9097905
supporting_text: Role of IL-15 in HIV-1-associated
hypergammaglobulinaemia.
- term:
id: GO:0035723
label: interleukin-15-mediated signaling pathway
evidence_type: IDA
original_reference_id: PMID:9097905
review:
summary: >-
ACCEPT: Direct evidence for IL15-mediated signaling.
action: ACCEPT
supported_by:
- reference_id: PMID:9097905
supporting_text: Role of IL-15 in HIV-1-associated
hypergammaglobulinaemia.
- term:
id: GO:0030225
label: macrophage differentiation
evidence_type: IDA
original_reference_id: PMID:24942581
review:
summary: >-
KEEP_AS_NON_CORE: PMID:24942581 shows CD4 ligation on monocytes triggers
macrophage differentiation enhanced by IL15. This is a downstream effect
of IL15 signaling, not a core function.
action: KEEP_AS_NON_CORE
supported_by:
- reference_id: PMID:24942581
supporting_text: CD4 ligation on human blood monocytes triggers
macrophage differentiation and enhances HIV infection.
- term:
id: GO:0035723
label: interleukin-15-mediated signaling pathway
evidence_type: IDA
original_reference_id: PMID:15123770
review:
summary: >-
ACCEPT: Direct evidence from study on IL15 signaling in neutrophils.
action: ACCEPT
supported_by:
- reference_id: PMID:15123770
supporting_text: 'Interleukin-15 enhances human neutrophil phagocytosis
by a Syk-dependent mechanism: importance of the IL-15Ralpha chain.'
- term:
id: GO:0050731
label: positive regulation of peptidyl-tyrosine phosphorylation
evidence_type: IDA
original_reference_id: PMID:15123770
review:
summary: >-
ACCEPT: IL15 positively regulates tyrosine phosphorylation through JAK-STAT
pathway activation. This is mechanistically correct - IL15 binding triggers
JAK kinase activation which phosphorylates STATs.
action: ACCEPT
supported_by:
- reference_id: PMID:15123770
supporting_text: 'Interleukin-15 enhances human neutrophil phagocytosis
by a Syk-dependent mechanism: importance of the IL-15Ralpha chain.'
- term:
id: GO:0050766
label: positive regulation of phagocytosis
evidence_type: IDA
original_reference_id: PMID:15123770
review:
summary: >-
ACCEPT: PMID:15123770 title is "Interleukin-15 enhances human neutrophil
phagocytosis." Direct experimental evidence.
action: ACCEPT
supported_by:
- reference_id: PMID:15123770
supporting_text: 'Interleukin-15 enhances human neutrophil phagocytosis
by a Syk-dependent mechanism: importance of the IL-15Ralpha chain.'
- term:
id: GO:0042119
label: neutrophil activation
evidence_type: IDA
original_reference_id: PMID:15123770
review:
summary: >-
ACCEPT: PMID:15123770 demonstrates IL15 activates neutrophils (enhances
phagocytosis). Consistent with IBA annotation.
action: ACCEPT
# === ISS (Sequence Similarity) ===
supported_by:
- reference_id: PMID:15123770
supporting_text: 'Interleukin-15 enhances human neutrophil phagocytosis
by a Syk-dependent mechanism: importance of the IL-15Ralpha chain.'
- term:
id: GO:0120163
label: negative regulation of cold-induced thermogenesis
evidence_type: ISS
original_reference_id: PMID:27684068
review:
summary: >-
KEEP_AS_NON_CORE: Redundant with IEA annotation. Pleiotropic effect via
adipose tissue regulation, not core cytokine function.
action: KEEP_AS_NON_CORE
# === TAS/Reactome Annotations ===
supported_by:
- reference_id: PMID:27684068
supporting_text: eCollection 2016. Deficiency of Interleukin-15
Confers Resistance to Obesity by Diminishing Inflammation and
Enhancing the Thermogenic Function of Adipose Tissues.
- term:
id: GO:0005576
label: extracellular region
evidence_type: TAS
original_reference_id: Reactome:R-HSA-449115
review:
summary: >-
ACCEPT: Reactome pathway shows IL15:IL15RA complex formation. IL15 is
found extracellularly.
action: ACCEPT
- term:
id: GO:0005576
label: extracellular region
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8983298
review:
summary: >-
ACCEPT: Reactome pathway step. Redundant but correct.
action: ACCEPT
- term:
id: GO:0005576
label: extracellular region
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8983300
review:
summary: >-
ACCEPT: Reactome pathway step.
action: ACCEPT
- term:
id: GO:0005576
label: extracellular region
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8983307
review:
summary: >-
ACCEPT: Reactome pathway step.
action: ACCEPT
- term:
id: GO:0005576
label: extracellular region
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8983335
review:
summary: >-
ACCEPT: Reactome pathway step showing receptor complex translocation.
action: ACCEPT
- term:
id: GO:0005576
label: extracellular region
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8983371
review:
summary: >-
ACCEPT: Reactome pathway step.
action: ACCEPT
- term:
id: GO:0005576
label: extracellular region
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8983374
review:
summary: >-
ACCEPT: Reactome pathway step.
action: ACCEPT
- term:
id: GO:0005576
label: extracellular region
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8983378
review:
summary: >-
ACCEPT: Reactome pathway step.
action: ACCEPT
- term:
id: GO:0005576
label: extracellular region
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8983384
review:
summary: >-
ACCEPT: Reactome pathway step.
action: ACCEPT
- term:
id: GO:0005768
label: endosome
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8983335
review:
summary: >-
ACCEPT: Reactome shows IL15 receptor complex translocates to endosome
during signaling.
action: ACCEPT
- term:
id: GO:0035723
label: interleukin-15-mediated signaling pathway
evidence_type: IDA
original_reference_id: PMID:24942581
review:
summary: >-
ACCEPT: Direct evidence for IL15-mediated signaling pathway.
action: ACCEPT
# === GO:0007260 (Phosphorylation - Previously Reviewed) ===
supported_by:
- reference_id: PMID:24942581
supporting_text: CD4 ligation on human blood monocytes triggers
macrophage differentiation and enhances HIV infection.
- term:
id: GO:0007260
label: tyrosine phosphorylation of STAT protein
evidence_type: IDA
original_reference_id: PMID:12244150
review:
summary: >-
OVER-ANNOTATION: IL15 is a cytokine that INDUCES STAT phosphorylation via
the
JAK-STAT signaling pathway, but does NOT catalyze the phosphorylation reaction
itself. Cytokines are signaling ligands that trigger downstream JAK kinases
to
phosphorylate STAT proteins. IL15 has no kinase activity. The appropriate
term
is GO:0042531 "positive regulation of tyrosine phosphorylation of STAT protein".
action: MODIFY
proposed_replacement_terms:
- id: GO:0042531
label: positive regulation of tyrosine phosphorylation of STAT protein
# === Additional IDA Annotations ===
supported_by:
- reference_id: PMID:12244150
supporting_text: IL-21 up-regulates the expression of genes associated
with innate immunity and Th1 response.
- term:
id: GO:0032740
label: positive regulation of interleukin-17 production
evidence_type: IDA
original_reference_id: PMID:16482511
review:
summary: >-
ACCEPT: IL15 promotes IL-17 production. This is part of its cytokine
production stimulation function.
action: ACCEPT
supported_by:
- reference_id: PMID:16482511
supporting_text: Divergent effects of IL-12 and IL-23 on the
production of IL-17 by human T cells.
- term:
id: GO:0034105
label: positive regulation of tissue remodeling
evidence_type: IC
original_reference_id: PMID:16482511
review:
summary: >-
KEEP_AS_NON_CORE: Inferred from GO:0032740 (IL-17 production). Tissue
remodeling is a downstream consequence of cytokine signaling, several
steps removed from IL15's direct activity.
action: KEEP_AS_NON_CORE
supported_by:
- reference_id: PMID:16482511
supporting_text: Divergent effects of IL-12 and IL-23 on the
production of IL-17 by human T cells.
- term:
id: GO:0050729
label: positive regulation of inflammatory response
evidence_type: IC
original_reference_id: PMID:16482511
review:
summary: >-
ACCEPT: Inferred from IL-17 production. IL15 promotes inflammation through
multiple mechanisms including cytokine induction. UniProt states IL15 is
involved in "inflammatory...immune responses."
action: ACCEPT
# === Additional Location Annotations ===
supported_by:
- reference_id: PMID:16482511
supporting_text: Divergent effects of IL-12 and IL-23 on the
production of IL-17 by human T cells.
- term:
id: GO:0005576
label: extracellular region
evidence_type: NAS
original_reference_id: PMID:14718574
review:
summary: >-
ACCEPT: Human plasma proteome study detected IL15 extracellularly.
action: ACCEPT
supported_by:
- reference_id: PMID:14718574
supporting_text: 'Epub 2004 Jan 12. The human plasma proteome: a nonredundant
list developed by combination of four separate sources.'
- term:
id: GO:0005615
label: extracellular space
evidence_type: TAS
original_reference_id: PMID:10851076
review:
summary: >-
ACCEPT: IL15 found in extracellular space.
action: ACCEPT
supported_by:
- reference_id: PMID:10851076
supporting_text: Altered natural killer cell differentiation in CD34+
progenitors from chronic myeloid leukemia patients.
- term:
id: GO:0005737
label: cytoplasm
evidence_type: TAS
original_reference_id: PMID:10851076
review:
summary: >-
ACCEPT: IL15-S21AA isoform is cytoplasmic per UniProt.
action: ACCEPT
supported_by:
- reference_id: PMID:10851076
supporting_text: Altered natural killer cell differentiation in CD34+
progenitors from chronic myeloid leukemia patients.
- term:
id: GO:0005768
label: endosome
evidence_type: TAS
original_reference_id: PMID:10851076
review:
summary: >-
ACCEPT: IL15 traffics through endosomal pathway.
action: ACCEPT
supported_by:
- reference_id: PMID:10851076
supporting_text: Altered natural killer cell differentiation in CD34+
progenitors from chronic myeloid leukemia patients.
- term:
id: GO:0005794
label: Golgi apparatus
evidence_type: TAS
original_reference_id: PMID:10851076
review:
summary: >-
ACCEPT: IL15 transits through Golgi during secretory pathway.
action: ACCEPT
# === Additional Process Annotations ===
supported_by:
- reference_id: PMID:10851076
supporting_text: Altered natural killer cell differentiation in CD34+
progenitors from chronic myeloid leukemia patients.
- term:
id: GO:0006955
label: immune response
evidence_type: TAS
original_reference_id: PMID:8178155
review:
summary: >-
ACCEPT: Original cloning paper. IL15 functions in immune response.
action: ACCEPT
supported_by:
- reference_id: PMID:8178155
supporting_text: Cloning of a T cell growth factor that interacts with
the beta chain of the interleukin-2 receptor.
- term:
id: GO:0007165
label: signal transduction
evidence_type: TAS
original_reference_id: PMID:8178155
review:
summary: >-
KEEP_AS_NON_CORE: Very general term. IL15 does participate in signal
transduction but more specific pathway terms are preferred.
action: KEEP_AS_NON_CORE
supported_by:
- reference_id: PMID:8178155
supporting_text: Cloning of a T cell growth factor that interacts with
the beta chain of the interleukin-2 receptor.
- term:
id: GO:0007267
label: cell-cell signaling
evidence_type: TAS
original_reference_id: PMID:7759105
review:
summary: >-
ACCEPT: IL15 mediates cell-cell signaling via trans-presentation (IL15
on one cell presents to receptors on another cell).
action: ACCEPT
supported_by:
- reference_id: PMID:7759105
supporting_text: Chromosomal assignment and genomic structure of Il15.
- term:
id: GO:0008284
label: positive regulation of cell population proliferation
evidence_type: TAS
original_reference_id: PMID:10851076
review:
summary: >-
KEEP_AS_NON_CORE: True but overly general. IL15 stimulates specific
immune cell proliferation. More specific terms preferred.
action: KEEP_AS_NON_CORE
supported_by:
- reference_id: PMID:10851076
supporting_text: Altered natural killer cell differentiation in CD34+
progenitors from chronic myeloid leukemia patients.
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with
GO terms
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000043
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword
mapping
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular
Location vocabulary mapping
findings: []
- id: GO_REF:0000052
title: Gene Ontology annotation based on curation of immunofluorescence data
findings: []
- id: GO_REF:0000107
title: Automatic transfer of experimentally verified manual GO annotation
data to orthologs using Ensembl Compara
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning
models
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:10627470
title: Expression of functional interleukin-15 receptor and autocrine
production of interleukin-15 as mechanisms of tumor propagation in
multiple myeloma.
findings:
- statement: IL15 promotes myeloma cell survival through autocrine
signaling
- id: PMID:10851076
title: Altered natural killer cell differentiation in CD34+ progenitors from
chronic myeloid leukemia patients.
findings: []
- id: PMID:12244150
title: IL-21 up-regulates the expression of genes associated with innate
immunity and Th1 response.
findings:
- statement: Study on IL-21 showing STAT3 activation; IL15 cited for
comparison
- id: PMID:14718574
title: 'The human plasma proteome: a nonredundant list developed by combination
of four separate sources.'
findings: []
- id: PMID:15123770
title: 'Interleukin-15 enhances human neutrophil phagocytosis by a Syk-dependent
mechanism: importance of the IL-15Ralpha chain.'
findings:
- statement: IL15 enhances neutrophil phagocytosis
- statement: Mechanism involves Syk kinase and requires IL-15Ralpha
- id: PMID:16284400
title: Soluble interleukin-15 receptor alpha (IL-15R alpha)-sushi as a
selective and potent agonist of IL-15 action through IL-15R beta/gamma.
findings: []
- id: PMID:16482511
title: Divergent effects of IL-12 and IL-23 on the production of IL-17 by
human T cells.
findings:
- statement: IL15 contributes to IL-17 production regulation
- id: PMID:23104097
title: Mechanistic and structural insight into the functional dichotomy
between IL-2 and IL-15.
findings:
- statement: Crystal structure of IL15 reveals signaling mechanism
- statement: IL15 and IL2 have distinct receptor engagement modes
- id: PMID:24942581
title: CD4 ligation on human blood monocytes triggers macrophage
differentiation and enhances HIV infection.
findings: []
- id: PMID:25416956
title: A proteome-scale map of the human interactome network.
findings: []
- id: PMID:27684068
title: Deficiency of Interleukin-15 Confers Resistance to Obesity by
Diminishing Inflammation and Enhancing the Thermogenic Function of Adipose
Tissues.
findings:
- statement: IL15 deficiency enhances thermogenesis - pleiotropic effect
- id: PMID:7759105
title: Chromosomal assignment and genomic structure of Il15.
findings: []
- id: PMID:8178155
title: Cloning of a T cell growth factor that interacts with the beta chain
of the interleukin-2 receptor.
findings:
- statement: Original identification of IL15 as T cell growth factor
- statement: IL15 signals through IL2RB (shared with IL-2)
- id: PMID:9097905
title: Role of IL-15 in HIV-1-associated hypergammaglobulinaemia.
findings: []
- id: Reactome:R-HSA-449115
title: IL15:IL15RA binds IL2RB:JAK1 and IL2RG:JAK3
findings: []
- id: Reactome:R-HSA-8983298
title: IL15 binds IL2RB:JAK1 and IL2RG:JAK3
findings: []
- id: Reactome:R-HSA-8983300
title: IL15RA:IL15:IL2RB:JAK1:IL2RG:JAK3 phosphorylates JAK3 and JAK1
findings: []
- id: Reactome:R-HSA-8983307
title: IL15 binds IL15RA
findings: []
- id: Reactome:R-HSA-8983335
title: IL15:IL15RA:IL2RB:JAK1:IL2RG:JAK3 translocates from the plasma
membrane to the endosome
findings: []
- id: Reactome:R-HSA-8983371
title: IL15:IL15RA:p-Y-IL2RB:p-Y-JAK1:p-Y-IL2RG:p-Y-JAK3 phosphorylates
STAT3 and STAT5
findings: []
- id: Reactome:R-HSA-8983374
title: p-Y-STAT3 and p-STAT5 dissociates from
IL15:IL15RA:IL2RB:p-JAK1:IL2RG:p-JAK3:p-Y-STAT3:p-STAT5
findings: []
- id: Reactome:R-HSA-8983378
title: IL15:IL15RA:p-Y-IL2RB:p-Y-JAK1:p-Y-IL2RG:p-Y-JAK3 binds STAT3 and
STAT5
findings: []
- id: Reactome:R-HSA-8983384
title: IL15:IL15RA:p-Y-IL2RB:p-Y-JAK1:p-Y-IL2RG:p-Y-JAK3:p-Y-SHC1:GRB2 binds
SOS1,SOS2
findings: []
core_functions:
- molecular_function:
id: GO:0005125
label: cytokine activity
description: >-
IL15 functions as a cytokine, binding to its receptor complex (IL15RA/IL2RB/IL2RG)
to trigger downstream signaling events that modulate immune cell function.
directly_involved_in:
- id: GO:0035723
label: interleukin-15-mediated signaling pathway
locations:
- id: GO:0005615
label: extracellular space