Interleukin-15 is a cytokine that plays a major role in the development of inflammatory and protective immune responses. It stimulates proliferation of natural killer cells, T-cells, and B-cells, and promotes secretion of cytokines. Unlike most cytokines, IL15 is expressed in association with its high affinity receptor IL15RA on the cell surface (trans-presentation) and signals through the IL2RB/IL2RG receptor complex, triggering JAK1/JAK3 phosphorylation and STAT3/STAT5 activation. Two isoforms exist: IL15-S48AA (secreted) and IL15-S21AA (intracellular, localized to cytoplasm and nucleus).
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0001819
positive regulation of cytokine production
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: ACCEPT: IL15 stimulates cytokine production. UniProt states IL15 "promotes the secretion of several cytokines" and "induces the production of IL8 and monocyte chemotactic protein 1/CCL2" in monocytes.
|
|
GO:0050778
positive regulation of immune response
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: ACCEPT: IL15 positively regulates immune responses by stimulating NK cells, T-cells, and B-cells. UniProt: "plays a major role in the development of inflammatory and protective immune responses to microbial invaders and parasites."
|
|
GO:0005125
cytokine activity
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: ACCEPT: IL15 is definitively a cytokine. UniProt RecName is "Interleukin-15" and function description begins "Cytokine that plays a major role..."
|
|
GO:0005615
extracellular space
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: ACCEPT: IL15 (isoform S48AA) is secreted. UniProt SUBCELLULAR LOCATION states "Isoform IL15-S48AA: Secreted."
|
|
GO:0042102
positive regulation of T cell proliferation
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: ACCEPT: IL15 stimulates T cell proliferation. UniProt: "Stimulates the proliferation of natural killer cells, T-cells and B-cells."
|
|
GO:0042119
neutrophil activation
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: ACCEPT: IL15 activates neutrophils. PMID:15123770 cited in UniProt shows IL15 enhances neutrophil phagocytosis.
|
|
GO:0005125
cytokine activity
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: ACCEPT: Redundant with IBA annotation but correct. IL15 has cytokine activity.
|
|
GO:0005126
cytokine receptor binding
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: ACCEPT: IL15 binds cytokine receptors. UniProt INTERACTION section shows IL15 binds IL15RA and IL2RB. This is core to its function.
|
|
GO:0005576
extracellular region
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: ACCEPT: IL15 is found in extracellular region when secreted (isoform S48AA).
|
|
GO:0005615
extracellular space
|
IEA
GO_REF:0000043 |
ACCEPT |
Summary: ACCEPT: Redundant but correct. Secreted isoform found in extracellular space.
|
|
GO:0005634
nucleus
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: ACCEPT: UniProt states "Isoform IL15-S21AA: Cytoplasm. Nucleus." The intracellular isoform localizes to the nucleus.
|
|
GO:0005737
cytoplasm
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: ACCEPT: UniProt states "Isoform IL15-S21AA: Cytoplasm." The intracellular isoform localizes to cytoplasm.
|
|
GO:0006955
immune response
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: ACCEPT: IL15 functions in immune response. UniProt: "plays a major role in the development of inflammatory and protective immune responses."
|
|
GO:0008284
positive regulation of cell population proliferation
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: KEEP_AS_NON_CORE: This is true but overly general. IL15 stimulates proliferation of specific immune cell types (NK, T, B cells), not general cell proliferation. More specific terms are preferred.
|
|
GO:0005515
protein binding
|
IPI
PMID:16284400 Soluble interleukin-15 receptor alpha (IL-15R alpha)-sushi a... |
MARK AS OVER ANNOTATED |
Summary: MARK_AS_OVER_ANNOTATED: "Protein binding" is uninformative. The specific interaction (IL15 binds IL15RA) is better captured by "cytokine receptor binding" (GO:0005126). Per curation guidelines, avoid generic "protein binding."
Supporting Evidence:
PMID:16284400
Nov 11. Soluble interleukin-15 receptor alpha (IL-15R alpha)-sushi as a selective and potent agonist of IL-15 action through IL-15R beta/gamma.
|
|
GO:0005515
protein binding
|
IPI
PMID:23104097 Mechanistic and structural insight into the functional dicho... |
MARK AS OVER ANNOTATED |
Summary: MARK_AS_OVER_ANNOTATED: Same as above - "protein binding" is uninformative. The IL15-receptor interaction is better captured by specific MF terms.
Supporting Evidence:
PMID:23104097
Mechanistic and structural insight into the functional dichotomy between IL-2 and IL-15.
|
|
GO:0005515
protein binding
|
IPI
PMID:25416956 A proteome-scale map of the human interactome network. |
MARK AS OVER ANNOTATED |
Summary: MARK_AS_OVER_ANNOTATED: High-throughput interactome study. Generic protein binding is not informative for cytokine function annotation.
Supporting Evidence:
PMID:25416956
A proteome-scale map of the human interactome network.
|
|
GO:0120163
negative regulation of cold-induced thermogenesis
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: KEEP_AS_NON_CORE: Transferred from mouse. PMID:27684068 shows IL15 deficiency enhances thermogenic function of adipose tissue. This is a secondary/pleiotropic effect, not a core function of IL15 as a cytokine.
|
|
GO:0005654
nucleoplasm
|
IDA
GO_REF:0000052 |
ACCEPT |
Summary: ACCEPT: HPA immunofluorescence data. Consistent with UniProt statement that isoform IL15-S21AA localizes to nucleus.
|
|
GO:0016607
nuclear speck
|
IDA
GO_REF:0000052 |
ACCEPT |
Summary: ACCEPT: HPA immunofluorescence data showing nuclear speck localization. More specific than general nucleus annotation.
|
|
GO:0007259
cell surface receptor signaling pathway via JAK-STAT
|
NAS
PMID:23104097 Mechanistic and structural insight into the functional dicho... |
ACCEPT |
Summary: ACCEPT: Core pathway for IL15 signaling. UniProt explicitly states IL15 "triggers the phosphorylation of JAK1 and JAK3 and the recruitment and subsequent phosphorylation of...STAT3 and STAT5."
Supporting Evidence:
PMID:23104097
Mechanistic and structural insight into the functional dichotomy between IL-2 and IL-15.
|
|
GO:0035723
interleukin-15-mediated signaling pathway
|
NAS
PMID:23104097 Mechanistic and structural insight into the functional dicho... |
ACCEPT |
Summary: ACCEPT: This IS the core signaling pathway for IL15. The gene product is literally the ligand that initiates this pathway.
Supporting Evidence:
PMID:23104097
Mechanistic and structural insight into the functional dichotomy between IL-2 and IL-15.
|
|
GO:0043066
negative regulation of apoptotic process
|
NAS
PMID:10627470 Expression of functional interleukin-15 receptor and autocri... |
KEEP AS NON CORE |
Summary: KEEP_AS_NON_CORE: PMID:10627470 shows IL15 promotes multiple myeloma cell survival. Anti-apoptotic effects are downstream of cytokine signaling, not a core function. May be context-dependent.
Supporting Evidence:
PMID:10627470
Expression of functional interleukin-15 receptor and autocrine production of interleukin-15 as mechanisms of tumor propagation in multiple myeloma.
|
|
GO:0043410
positive regulation of MAPK cascade
|
NAS
PMID:23104097 Mechanistic and structural insight into the functional dicho... |
ACCEPT |
Summary: ACCEPT: IL15 activates MAPK in addition to JAK-STAT. This is part of its signaling mechanism.
Supporting Evidence:
PMID:23104097
Mechanistic and structural insight into the functional dichotomy between IL-2 and IL-15.
|
|
GO:0005125
cytokine activity
|
IDA
PMID:9097905 Role of IL-15 in HIV-1-associated hypergammaglobulinaemia. |
ACCEPT |
Summary: ACCEPT: Direct experimental evidence for cytokine activity. PMID:9097905 demonstrates IL15 function in HIV context.
Supporting Evidence:
PMID:9097905
Role of IL-15 in HIV-1-associated hypergammaglobulinaemia.
|
|
GO:0005615
extracellular space
|
IDA
PMID:9097905 Role of IL-15 in HIV-1-associated hypergammaglobulinaemia. |
ACCEPT |
Summary: ACCEPT: Direct evidence IL15 is secreted and found extracellularly.
Supporting Evidence:
PMID:9097905
Role of IL-15 in HIV-1-associated hypergammaglobulinaemia.
|
|
GO:0035723
interleukin-15-mediated signaling pathway
|
IDA
PMID:9097905 Role of IL-15 in HIV-1-associated hypergammaglobulinaemia. |
ACCEPT |
Summary: ACCEPT: Direct evidence for IL15-mediated signaling.
Supporting Evidence:
PMID:9097905
Role of IL-15 in HIV-1-associated hypergammaglobulinaemia.
|
|
GO:0030225
macrophage differentiation
|
IDA
PMID:24942581 CD4 ligation on human blood monocytes triggers macrophage di... |
KEEP AS NON CORE |
Summary: KEEP_AS_NON_CORE: PMID:24942581 shows CD4 ligation on monocytes triggers macrophage differentiation enhanced by IL15. This is a downstream effect of IL15 signaling, not a core function.
Supporting Evidence:
PMID:24942581
CD4 ligation on human blood monocytes triggers macrophage differentiation and enhances HIV infection.
|
|
GO:0035723
interleukin-15-mediated signaling pathway
|
IDA
PMID:15123770 Interleukin-15 enhances human neutrophil phagocytosis by a S... |
ACCEPT |
Summary: ACCEPT: Direct evidence from study on IL15 signaling in neutrophils.
Supporting Evidence:
PMID:15123770
Interleukin-15 enhances human neutrophil phagocytosis by a Syk-dependent mechanism: importance of the IL-15Ralpha chain.
|
|
GO:0050731
positive regulation of peptidyl-tyrosine phosphorylation
|
IDA
PMID:15123770 Interleukin-15 enhances human neutrophil phagocytosis by a S... |
ACCEPT |
Summary: ACCEPT: IL15 positively regulates tyrosine phosphorylation through JAK-STAT pathway activation. This is mechanistically correct - IL15 binding triggers JAK kinase activation which phosphorylates STATs.
Supporting Evidence:
PMID:15123770
Interleukin-15 enhances human neutrophil phagocytosis by a Syk-dependent mechanism: importance of the IL-15Ralpha chain.
|
|
GO:0050766
positive regulation of phagocytosis
|
IDA
PMID:15123770 Interleukin-15 enhances human neutrophil phagocytosis by a S... |
ACCEPT |
Summary: ACCEPT: PMID:15123770 title is "Interleukin-15 enhances human neutrophil phagocytosis." Direct experimental evidence.
Supporting Evidence:
PMID:15123770
Interleukin-15 enhances human neutrophil phagocytosis by a Syk-dependent mechanism: importance of the IL-15Ralpha chain.
|
|
GO:0042119
neutrophil activation
|
IDA
PMID:15123770 Interleukin-15 enhances human neutrophil phagocytosis by a S... |
ACCEPT |
Summary: ACCEPT: PMID:15123770 demonstrates IL15 activates neutrophils (enhances phagocytosis). Consistent with IBA annotation.
Supporting Evidence:
PMID:15123770
Interleukin-15 enhances human neutrophil phagocytosis by a Syk-dependent mechanism: importance of the IL-15Ralpha chain.
|
|
GO:0120163
negative regulation of cold-induced thermogenesis
|
ISS
PMID:27684068 Deficiency of Interleukin-15 Confers Resistance to Obesity b... |
KEEP AS NON CORE |
Summary: KEEP_AS_NON_CORE: Redundant with IEA annotation. Pleiotropic effect via adipose tissue regulation, not core cytokine function.
Supporting Evidence:
PMID:27684068
eCollection 2016. Deficiency of Interleukin-15 Confers Resistance to Obesity by Diminishing Inflammation and Enhancing the Thermogenic Function of Adipose Tissues.
|
|
GO:0005576
extracellular region
|
TAS
Reactome:R-HSA-449115 |
ACCEPT |
Summary: ACCEPT: Reactome pathway shows IL15:IL15RA complex formation. IL15 is found extracellularly.
|
|
GO:0005576
extracellular region
|
TAS
Reactome:R-HSA-8983298 |
ACCEPT |
Summary: ACCEPT: Reactome pathway step. Redundant but correct.
|
|
GO:0005576
extracellular region
|
TAS
Reactome:R-HSA-8983300 |
ACCEPT |
Summary: ACCEPT: Reactome pathway step.
|
|
GO:0005576
extracellular region
|
TAS
Reactome:R-HSA-8983307 |
ACCEPT |
Summary: ACCEPT: Reactome pathway step.
|
|
GO:0005576
extracellular region
|
TAS
Reactome:R-HSA-8983335 |
ACCEPT |
Summary: ACCEPT: Reactome pathway step showing receptor complex translocation.
|
|
GO:0005576
extracellular region
|
TAS
Reactome:R-HSA-8983371 |
ACCEPT |
Summary: ACCEPT: Reactome pathway step.
|
|
GO:0005576
extracellular region
|
TAS
Reactome:R-HSA-8983374 |
ACCEPT |
Summary: ACCEPT: Reactome pathway step.
|
|
GO:0005576
extracellular region
|
TAS
Reactome:R-HSA-8983378 |
ACCEPT |
Summary: ACCEPT: Reactome pathway step.
|
|
GO:0005576
extracellular region
|
TAS
Reactome:R-HSA-8983384 |
ACCEPT |
Summary: ACCEPT: Reactome pathway step.
|
|
GO:0005768
endosome
|
TAS
Reactome:R-HSA-8983335 |
ACCEPT |
Summary: ACCEPT: Reactome shows IL15 receptor complex translocates to endosome during signaling.
|
|
GO:0035723
interleukin-15-mediated signaling pathway
|
IDA
PMID:24942581 CD4 ligation on human blood monocytes triggers macrophage di... |
ACCEPT |
Summary: ACCEPT: Direct evidence for IL15-mediated signaling pathway.
Supporting Evidence:
PMID:24942581
CD4 ligation on human blood monocytes triggers macrophage differentiation and enhances HIV infection.
|
|
GO:0007260
tyrosine phosphorylation of STAT protein
|
IDA
PMID:12244150 IL-21 up-regulates the expression of genes associated with i... |
MODIFY |
Summary: OVER-ANNOTATION: IL15 is a cytokine that INDUCES STAT phosphorylation via the JAK-STAT signaling pathway, but does NOT catalyze the phosphorylation reaction itself. Cytokines are signaling ligands that trigger downstream JAK kinases to phosphorylate STAT proteins. IL15 has no kinase activity. The appropriate term is GO:0042531 "positive regulation of tyrosine phosphorylation of STAT protein".
Proposed replacements:
positive regulation of tyrosine phosphorylation of STAT protein
Supporting Evidence:
PMID:12244150
IL-21 up-regulates the expression of genes associated with innate immunity and Th1 response.
|
|
GO:0032740
positive regulation of interleukin-17 production
|
IDA
PMID:16482511 Divergent effects of IL-12 and IL-23 on the production of IL... |
ACCEPT |
Summary: ACCEPT: IL15 promotes IL-17 production. This is part of its cytokine production stimulation function.
Supporting Evidence:
PMID:16482511
Divergent effects of IL-12 and IL-23 on the production of IL-17 by human T cells.
|
|
GO:0034105
positive regulation of tissue remodeling
|
IC
PMID:16482511 Divergent effects of IL-12 and IL-23 on the production of IL... |
KEEP AS NON CORE |
Summary: KEEP_AS_NON_CORE: Inferred from GO:0032740 (IL-17 production). Tissue remodeling is a downstream consequence of cytokine signaling, several steps removed from IL15's direct activity.
Supporting Evidence:
PMID:16482511
Divergent effects of IL-12 and IL-23 on the production of IL-17 by human T cells.
|
|
GO:0050729
positive regulation of inflammatory response
|
IC
PMID:16482511 Divergent effects of IL-12 and IL-23 on the production of IL... |
ACCEPT |
Summary: ACCEPT: Inferred from IL-17 production. IL15 promotes inflammation through multiple mechanisms including cytokine induction. UniProt states IL15 is involved in "inflammatory...immune responses."
Supporting Evidence:
PMID:16482511
Divergent effects of IL-12 and IL-23 on the production of IL-17 by human T cells.
|
|
GO:0005576
extracellular region
|
NAS
PMID:14718574 The human plasma proteome: a nonredundant list developed by ... |
ACCEPT |
Summary: ACCEPT: Human plasma proteome study detected IL15 extracellularly.
Supporting Evidence:
PMID:14718574
Epub 2004 Jan 12. The human plasma proteome: a nonredundant list developed by combination of four separate sources.
|
|
GO:0005615
extracellular space
|
TAS
PMID:10851076 Altered natural killer cell differentiation in CD34+ progeni... |
ACCEPT |
Summary: ACCEPT: IL15 found in extracellular space.
Supporting Evidence:
PMID:10851076
Altered natural killer cell differentiation in CD34+ progenitors from chronic myeloid leukemia patients.
|
|
GO:0005737
cytoplasm
|
TAS
PMID:10851076 Altered natural killer cell differentiation in CD34+ progeni... |
ACCEPT |
Summary: ACCEPT: IL15-S21AA isoform is cytoplasmic per UniProt.
Supporting Evidence:
PMID:10851076
Altered natural killer cell differentiation in CD34+ progenitors from chronic myeloid leukemia patients.
|
|
GO:0005768
endosome
|
TAS
PMID:10851076 Altered natural killer cell differentiation in CD34+ progeni... |
ACCEPT |
Summary: ACCEPT: IL15 traffics through endosomal pathway.
Supporting Evidence:
PMID:10851076
Altered natural killer cell differentiation in CD34+ progenitors from chronic myeloid leukemia patients.
|
|
GO:0005794
Golgi apparatus
|
TAS
PMID:10851076 Altered natural killer cell differentiation in CD34+ progeni... |
ACCEPT |
Summary: ACCEPT: IL15 transits through Golgi during secretory pathway.
Supporting Evidence:
PMID:10851076
Altered natural killer cell differentiation in CD34+ progenitors from chronic myeloid leukemia patients.
|
|
GO:0006955
immune response
|
TAS
PMID:8178155 Cloning of a T cell growth factor that interacts with the be... |
ACCEPT |
Summary: ACCEPT: Original cloning paper. IL15 functions in immune response.
Supporting Evidence:
PMID:8178155
Cloning of a T cell growth factor that interacts with the beta chain of the interleukin-2 receptor.
|
|
GO:0007165
signal transduction
|
TAS
PMID:8178155 Cloning of a T cell growth factor that interacts with the be... |
KEEP AS NON CORE |
Summary: KEEP_AS_NON_CORE: Very general term. IL15 does participate in signal transduction but more specific pathway terms are preferred.
Supporting Evidence:
PMID:8178155
Cloning of a T cell growth factor that interacts with the beta chain of the interleukin-2 receptor.
|
|
GO:0007267
cell-cell signaling
|
TAS
PMID:7759105 Chromosomal assignment and genomic structure of Il15. |
ACCEPT |
Summary: ACCEPT: IL15 mediates cell-cell signaling via trans-presentation (IL15 on one cell presents to receptors on another cell).
Supporting Evidence:
PMID:7759105
Chromosomal assignment and genomic structure of Il15.
|
|
GO:0008284
positive regulation of cell population proliferation
|
TAS
PMID:10851076 Altered natural killer cell differentiation in CD34+ progeni... |
KEEP AS NON CORE |
Summary: KEEP_AS_NON_CORE: True but overly general. IL15 stimulates specific immune cell proliferation. More specific terms preferred.
Supporting Evidence:
PMID:10851076
Altered natural killer cell differentiation in CD34+ progenitors from chronic myeloid leukemia patients.
|
|
GO:0009986
cell surface
|
NAS | NEW |
Summary: NEW: IL15 is presented at the cell surface as an IL15:IL15RA complex during trans-presentation to IL2RB/IL2RG-bearing neighboring cells.
Reason: Core function synthesis includes cell-surface trans-presentation, but the current GOA-derived cellular component annotations do not include cell surface.
Supporting Evidence:
file:human/IL15/IL15-deep-research-falcon.md
IL-15 is commonly delivered by **trans-presentation**: an “IL-15-presenting” cell displays a **membrane IL-15/IL-15Rα complex** that stimulates neighboring lymphocytes through **IL2RB/IL2RG**.
|
|
GO:0016170
interleukin-15 receptor binding
|
NAS | NEW |
Summary: NEW: IL15 binds its private high-affinity receptor chain IL15RA and then recruits IL2RB/IL2RG for signaling. This is more informative than generic protein binding and more specific than the existing cytokine receptor binding annotation.
Reason: Specific IL15 receptor binding is a core molecular function supported by biochemical, structural and trans-presentation literature but is absent from the current GOA-derived annotations.
Supporting Evidence:
file:human/IL15/IL15-deep-research-falcon.md
Human IL-15 binds IL15RA with very high affinity and mutational mapping identified key IL-15 residues in helices B/C required for IL15RA engagement.
|
|
GO:0032819
positive regulation of natural killer cell proliferation
|
NAS | NEW |
Summary: NEW: IL15 is a central positive regulator of NK-cell proliferation, activation and maintenance. This more specific term should complement the broad cell population proliferation annotations kept as non-core.
Reason: Existing annotations include only broad proliferation terms and miss the key NK-cell-specific proliferative activity.
Supporting Evidence:
file:human/IL15/IL15-deep-research-falcon.md
IL-15 is essential for NK-cell development and potently promotes NK proliferation, activation, granzyme/perforin expression, degranulation, and inflammatory cytotoxicity.
|
|
GO:0032816
positive regulation of natural killer cell activation
|
NAS | NEW |
Summary: NEW: IL15 positively regulates NK-cell activation, including effector programs linked to cytotoxicity.
Reason: NK activation is a specific, well-established immune-cell outcome of IL15 signaling that is not represented by the existing broad immune response annotations.
Supporting Evidence:
file:human/IL15/IL15-deep-research-falcon.md
IL-15 is essential for NK-cell development and potently promotes NK proliferation, activation, granzyme/perforin expression, degranulation, and inflammatory cytotoxicity.
|
|
GO:0030890
positive regulation of B cell proliferation
|
NAS | NEW |
Summary: NEW: IL15 costimulates activated B-cell proliferation, providing a specific B-cell term to replace overly broad cell population proliferation when B-cell evidence is intended.
Reason: The review currently notes B-cell proliferation only in summaries and broad proliferation annotations; a specific B-cell BP term is warranted.
Supporting Evidence:
file:human/IL15/IL15-deep-research-falcon.md
IL-15 costimulates activated human B-cell proliferation and, with CD40L, induces IgM, IgG1, and IgA secretion via IL2RB-dependent signaling.
|
|
GO:0002639
positive regulation of immunoglobulin production
|
NAS | NEW |
Summary: NEW: In activated B cells, IL15 can promote immunoglobulin secretion in the appropriate costimulatory context.
Reason: Falcon research identified direct B-cell evidence for immunoglobulin production that is absent from the current annotation set.
Supporting Evidence:
file:human/IL15/IL15-deep-research-falcon.md
IL-15 costimulates activated human B-cell proliferation and, with CD40L, induces IgM, IgG1, and IgA secretion via IL2RB-dependent signaling.
|
|
GO:0090023
positive regulation of neutrophil chemotaxis
|
NAS | NEW |
Summary: NEW: IL15 promotes neutrophil recruitment/chemotaxis in addition to the already accepted neutrophil activation and phagocytosis annotations.
Reason: The current annotation set captures neutrophil activation and phagocytosis but misses the more specific neutrophil recruitment phenotype supported by the literature synthesis.
Supporting Evidence:
file:human/IL15/IL15-deep-research-falcon.md
IL-15 directly delays neutrophil apoptosis and enhances phagocytosis, adhesion, IL-8 production, and in vivo recruitment, supporting specific neutrophil-focused process annotations rather than broad leukocyte proliferation terms.
|
Question: You are an expert researcher providing comprehensive, well-cited information.
Provide detailed information focusing on:
1. Key concepts and definitions with current understanding
2. Recent developments and latest research (prioritize 2023-2024 sources)
3. Current applications and real-world implementations
4. Expert opinions and analysis from authoritative sources
5. Relevant statistics and data from recent studies
Format as a comprehensive research report with proper citations. Include URLs and publication dates where available.
Always prioritize recent, authoritative sources and provide specific citations for all major claims.
Concise GO annotation research for human IL15 / UniProt P40933. Focus only on GO-relevant evidence: IL15 cytokine activity; high-affinity binding to IL15RA and signaling through IL2RB/IL2RG; IL15 trans-presentation by IL15RA versus soluble/secreted cytokine activity; NK cell, CD8 T cell, T cell, B cell and neutrophil proliferation/activation/survival; positive regulation of cytokine production and immune response; JAK1/JAK3, STAT3/STAT5 signaling; isoform-specific localization of secreted IL15-S48AA versus intracellular IL15-S21AA cytoplasm/nucleus; caveats for generic protein binding, broad cell population proliferation, and over-broad immune/developmental process annotations. Include PMID/DOI citations and keep under 1500 words.
This report summarizes GO-relevant mechanistic evidence for human IL-15 (IL15; UniProt P40933) focusing on (i) cytokine activity, (ii) high-affinity IL15RA binding and signaling via IL2RB/IL2RG, (iii) IL-15 trans-presentation versus soluble IL-15/IL-15Rα activity, (iv) downstream JAK1/JAK3 → STAT3/STAT5 signaling, (v) leukocyte functional outcomes (NK, CD8 T, T, B, neutrophils), and (vi) isoform-specific localization determined by alternative signal peptides (48-aa vs 21-aa). Evidence is prioritized for 2023–2024 where possible; however, key GO assertions rely on foundational mechanistic studies.
IL-15 is a common γ-chain (γc) cytokine that signals through a heterotrimeric receptor system: a private IL-15Rα (IL15RA/CD215) chain and shared signaling chains IL-2Rβ (IL2RB/CD122) and γc (IL2RG/CD132). (skariah2024signallingmechanismsdriving pages 2-3)
A central concept for GO curation is that IL-15 is not best modeled as a freely diffusing cytokine under physiologic conditions. Instead, IL-15 is commonly delivered by trans-presentation: an “IL-15-presenting” cell displays a membrane IL-15/IL-15Rα complex that stimulates neighboring lymphocytes through IL2RB/IL2RG. (skariah2024signallingmechanismsdriving pages 2-3, skariah2024signallingmechanismsdriving pages 3-3)
Recent synthesis emphasizes that soluble IL-15 is rarely detected as ‘free’ IL-15 in serum; rather, it is found complexed with soluble IL-15Rα (heterodimeric IL-15/IL-15Rα), which can also stimulate IL2RB/IL2RG on lymphocytes. (skariah2024signallingmechanismsdriving pages 2-3, skariah2024signallingmechanismsdriving pages 10-11)
A 2024 mechanistic review integrates current understanding that IL-15 is controlled at multiple levels (mRNA translation, trafficking, receptor chaperoning), and that IL-15Rα serves as both a high-affinity binding partner and a chaperone that stabilizes IL-15 and supports surface display and trans-presentation. (Skariah et al., 2024-01, Discovery Immunology, DOI: 10.1093/discim/kyae002, URL: https://doi.org/10.1093/discim/kyae002) (skariah2024signallingmechanismsdriving pages 4-5, skariah2024signallingmechanismsdriving pages 2-3)
This review also highlights downstream signaling branches relevant to GO BP terms (JAK/STAT; PI3K/AKT/mTOR; MAPK) and connects IL-15 to tissue lymphocyte homeostasis and inflammation. (skariah2024signallingmechanismsdriving pages 7-8, skariah2024signallingmechanismsdriving pages 8-8)
A definitive biochemical mapping study identified IL-15 residues required for IL-15Rα binding and implicated additional residues in IL-2Rβ recruitment (thus supporting specific receptor-binding MF annotations rather than generic “protein binding”). (Bernard et al., 2004-06, J Biol Chem, DOI: 10.1074/jbc.M312458200, URL: https://doi.org/10.1074/jbc.M312458200) (bernard2004identificationofan pages 1-2, bernard2004identificationofan pages 8-9)
Quantitatively, this study reports tight IL-15:IL-15Rα binding (Kd ≈ 0.05 nM) and provides mutational effects on affinity and bioactivity (e.g., V49D ~13-fold affinity drop with near WT bioactivity; certain mutations preserve IL-15Rα binding but abrogate activity, consistent with disrupted signaling-chain recruitment). (bernard2004identificationofan pages 1-2, bernard2004identificationofan pages 8-9)
Independent receptor framework evidence (including transfection responsiveness requiring IL-2Rβ and γc) is summarized in a highly cited receptor review. (Waldmann et al., 1998-01, Int Rev Immunol, DOI: 10.3109/08830189809042995, URL: https://doi.org/10.3109/08830189809042995) (waldmann1998interleukin2interleukin15and pages 8-11)
Quantitative phosphoproteomics in T-cell lines showed IL-15 induces tyrosine-phosphorylation/activation of JAK1 and JAK3 and downstream STAT5 phosphorylation. JAK1 and JAK3 were highly enriched in phosphotyrosine immunocomplexes (reported ratios ~13 and 20, respectively), and JAK3 phosphopeptides including Y980/Y981 were strongly enriched (up to ratio 75). STAT5 phosphorylation (e.g., STAT5 Y694/Y699 depending on isoform/assay) was validated. (Osinalde et al., 2015-01, PROTEOMICS, DOI: 10.1002/pmic.201400194, URL: https://doi.org/10.1002/pmic.201400194) (osinalde2015simultaneousdissectionand pages 6-7, osinalde2015simultaneousdissectionand pages 7-8)
In immune contexts, IL-15-driven expansion and effector programs are frequently described as JAK/STAT-dependent, and JAK1→STAT3 and JAK3/STAT5 dependencies are emphasized in disease-relevant models (e.g., IL-15-induced STAT3 phosphorylation increased with activating JAK1 mutations and abolished by JAK1 inhibition; JAK3/STAT5 inhibition abolishes NK proliferation). (skariah2024signallingmechanismsdriving pages 7-8)
In vivo evidence demonstrates that IL-15Rα can chaperone IL-15 to yield secreted bioactive IL-15/IL-15Rα heterodimers, particularly enabling secretion/activity of the SSP isoform when co-expressed with IL-15Rα. (Bergamaschi et al., 2009-09, J Immunol, DOI: 10.4049/jimmunol.0900693, URL: https://doi.org/10.4049/jimmunol.0900693) (bergamaschi2009secretionandbiological pages 1-2, bergamaschi2009secretionandbiological pages 8-9)
A conceptual and mechanistic review additionally supports that soluble IL-15Rα can extend IL-15 half-life and modulate activity, and provides approximate sizes for soluble receptor species (human ~42 kDa). (Bulfone-Paus et al., 2006-04, BioEssays, DOI: 10.1002/bies.20380, URL: https://doi.org/10.1002/bies.20380) (bulfone‐paus2006theinterleukin‐15interleukin‐15receptor pages 6-8)
Two human IL-15 precursor isoforms are generated by alternate signal peptides, with identical mature cytokine sequences.
48-aa long signal peptide (LSP) isoform: ER localization and secretion competence. In COS cells, LSP-GFP showed ER staining in the majority of fluorescent cells (~85%) and LSP-IL-15 was described as largely secreted (though translation/trafficking can be limiting). (Tagaya et al., 1997-12, PNAS, DOI: 10.1073/pnas.94.26.14444, URL: https://doi.org/10.1073/pnas.94.26.14444) (tagaya1997generationofsecretable pages 4-5)
21-aa short signal peptide (SSP) isoform: not secreted in COS-cell experiments and instead localizes to cytoplasm and nucleus, supporting isoform-specific intracellular/nuclear CC annotations. (Tagaya et al., 1997) (tagaya1997generationofsecretable pages 1-2)
Follow-up trafficking work showed LSP-IL-15 has multiple fates (ER entry with glycosylation and secretion vs cytosolic unglycosylated proteasome-targeted species), while SSP-IL-15 does not enter ER and can enter the nucleus. (Kurys et al., 2000-09, J Biol Chem, DOI: 10.1074/jbc.M002373200, URL: https://doi.org/10.1074/jbc.M002373200) (kurys2000thelongsignal pages 4-5, kurys2000thelongsignal pages 1-1)
IL-15 supports homeostatic and inflammatory programs in tissue lymphocytes, promoting proliferation and effector differentiation (e.g., NK metabolic activation via mTORC1 to support cytotoxic effector functions). (skariah2024signallingmechanismsdriving pages 8-8, skariah2024signallingmechanismsdriving pages 7-8)
The 2024 synthesis emphasizes IL-15-dependent maintenance of specific lymphocyte populations and effector molecules, supporting BP annotations such as positive regulation of NK cell proliferation/activation and positive regulation of CD8 T cell homeostasis/trafficking. (skariah2024signallingmechanismsdriving pages 8-8, skariah2024signallingmechanismsdriving pages 10-11)
Primary data show IL-15 costimulates activated human B cell proliferation (but not resting B cells) and, in combination with CD40L, induces polyclonal Ig secretion (IgM, IgG1, IgA). Blocking studies demonstrate IL-15 signaling in B cells requires IL-2Rβ (IL2RB) but not IL-2Rα, supporting a receptor-signaling GO link that is specific and experimentally tested. (Armitage et al., 1995-01, J Immunol, DOI: 10.4049/jimmunol.154.2.483, URL: https://doi.org/10.4049/jimmunol.154.2.483) (armitage1995il15hasstimulatory pages 1-2, armitage1995il15hasstimulatory pages 4-5)
FDC-derived IL-15 presented in membrane-bound form enhances germinal center B cell proliferation, consistent with a trans-presentation-like delivery mode in B cell zones. (Park et al., 2004-12, J Immunol, DOI: 10.4049/jimmunol.173.11.6676, URL: https://doi.org/10.4049/jimmunol.173.11.6676) (park2004folliculardendriticcells pages 1-2)
A focused neutrophil review summarizes direct IL-15 effects including cytoskeletal rearrangements, enhanced phagocytosis, IL-8 production (via NF-κB/AP-1 activation), and delayed apoptosis, supporting specific neutrophil-focused BP terms. (Cassatella & McDonald, 2000-05, Curr Opin Hematol, DOI: 10.1097/00062752-200005000-00008, URL: https://doi.org/10.1097/00062752-200005000-00008) (cassatella2000interleukin15andits pages 1-2, cassatella2000interleukin15andits pages 3-4)
IL-15 increases neutrophil adhesion onto respiratory epithelial cells and attracts neutrophils in vivo, and is associated with increased CXCL2/MIP-2 and IL-6 production, supporting neutrophil chemotaxis/recruitment and adhesion processes. (Pelletier & Girard, 2005-08, Clin Exp Immunol, DOI: 10.1111/j.1365-2249.2005.02861.x, URL: https://doi.org/10.1111/j.1365-2249.2005.02861.x) (pelletier2005interleukin‐15increasesneutrophil pages 9-11)
| GO aspect | Suggested GO term name | Evidence summary (1 sentence) | Key experimental system | Key citation details |
|---|---|---|---|---|
| MF | cytokine activity | IL-15 is a γc-family cytokine that exerts pleiotropic immune-enhancing activity on lymphocytes and other leukocytes, supporting a specific cytokine-function annotation rather than generic binding alone. | Human cells; review integrating primary studies | Skariah et al. 2024, Discovery Immunology, doi:10.1093/discim/kyae002; Fehniger & Caligiuri 2001, Blood, doi:10.1182/blood.v97.1.14 (skariah2024signallingmechanismsdriving pages 2-3, skariah2024signallingmechanismsdriving pages 4-5) |
| MF | interleukin-15 receptor alpha chain binding | Human IL-15 binds IL15RA with very high affinity and mutational mapping identified key IL-15 residues in helices B/C required for IL15RA engagement. | In vitro biochem; peptide scanning; mutagenesis | Bernard et al. 2004, J Biol Chem, doi:10.1074/jbc.M312458200; IL-15:IL15RA Kd ≈ 0.05 nM; alternative affinity notation Ka ~10^11 M^-1 in reviews (bernard2004identificationofan pages 1-2, djaafar2008effectsofil15 pages 21-25) |
| MF | cytokine receptor binding involved in IL2RB/IL2RG signaling | After IL15RA engagement, IL-15 recruits the signaling receptor chains IL2RB/IL2RG, with peptide-2 residues contributing to IL-2Rβ/γ recruitment and signaling-competent complex assembly. | In vitro biochem; receptor mapping; transfection | Bernard et al. 2004, J Biol Chem, doi:10.1074/jbc.M312458200; Waldmann et al. 1998, Int Rev Immunol, doi:10.3109/08830189809042995 (bernard2004identificationofan pages 1-2, waldmann1998interleukin2interleukin15and pages 8-11) |
| BP | cytokine-mediated signaling pathway via trans-presentation | Physiologic IL-15 delivery is dominated by IL15RA-dependent trans-presentation, where membrane IL-15/IL15RA on one cell stimulates IL2RB/IL2RG on adjacent lymphocytes. | Human/mouse immune cells; review with primary support | Skariah et al. 2024, Discovery Immunology, doi:10.1093/discim/kyae002; Cloutier et al. 2024, Front Immunol, doi:10.3389/fimmu.2024.1404891 (skariah2024signallingmechanismsdriving pages 2-3, skariah2024signallingmechanismsdriving pages 3-3) |
| MF/BP | soluble IL-15/IL-15Rα complex activity | Circulating soluble IL-15 is typically found as IL-15/IL15RA heterodimer, and soluble IL15RA can chaperone/stabilize IL-15 and enhance or modulate activity through IL2RB/IL2RG-bearing cells. | Human/mouse serum; in vivo plasmid expression; review | Bergamaschi et al. 2009, J Immunol, doi:10.4049/jimmunol.0900693; Bulfone-Paus et al. 2006, BioEssays, doi:10.1002/bies.20380; soluble IL15RA species ~30 kDa mouse/~42 kDa human (bergamaschi2009secretionandbiological pages 1-2, bulfone‐paus2006theinterleukin‐15interleukin‐15receptor pages 6-8) |
| BP | JAK-STAT cascade downstream of IL-15 receptor | IL-15 receptor signaling activates JAK1/JAK3 and predominantly STAT5, with STAT3 also activated in some T-cell/IEL contexts downstream of IL2RB/IL2RG. | Human T cells; T-cell lines; phosphoproteomics; NK review | Osinalde et al. 2015, PROTEOMICS, doi:10.1002/pmic.201400194; JAK1/JAK3 phospho-enrichment ratios ~13/~20 and JAK3 Y980/Y981 ratios up to 75; Marzec et al. 2008, Cancer Res, doi:10.1158/0008-5472.CAN-07-2403; Nielsen et al. 1998, Cytokine, doi:10.1006/cyto.1998.0356 (osinalde2015simultaneousdissectionand pages 6-7, marzec2008differentialeffectsof pages 4-5) |
| BP | positive regulation of natural killer cell proliferation / activation / cytotoxicity | IL-15 is essential for NK-cell development and potently promotes NK proliferation, activation, granzyme/perforin expression, degranulation, and inflammatory cytotoxicity. | Mouse genetics; human/mouse NK cells; recent review | Skariah et al. 2024, Discovery Immunology, doi:10.1093/discim/kyae002; Wang & Zhao 2021, Front Immunol, doi:10.3389/fimmu.2021.610789; JAK3/STAT5 inhibition abolishes NK proliferation (skariah2024signallingmechanismsdriving pages 7-8, wang2021transcriptionfactorsassociated pages 7-8) |
| BP | positive regulation of CD8-positive alpha-beta T cell homeostasis / survival / trafficking | IL-15 supports memory and tissue CD8 T-cell homeostasis, survival, and tissue trafficking/residency, including induction of CD69 and maintenance of intestinal/tissue-resident CD8 populations. | Mouse genetics; tissue lymphocyte studies; review | Skariah et al. 2024, Discovery Immunology, doi:10.1093/discim/kyae002; Berard et al. 2003, J Immunol, doi:10.4049/jimmunol.170.10.5018 (skariah2024signallingmechanismsdriving pages 8-8, skariah2024signallingmechanismsdriving pages 10-11) |
| BP | positive regulation of T cell proliferation / activation | IL-15 drives proliferation and activation-marker expression in T cells and can sustain TH1/CD8 programs without the IL-2-associated death phenotype. | Human T cells; cell lines; primary studies/reviews | Djaafar 2008 review summarizing primary data; Campbell et al. 2001, J Immunol, doi:10.4049/jimmunol.167.1.553; Lowe et al. 2014, Genes Immun, doi:10.1038/gene.2014.3 (djaafar2008effectsofil15 pages 25-29, skariah2024signallingmechanismsdriving pages 4-5) |
| BP | positive regulation of B cell proliferation / differentiation / immunoglobulin production | IL-15 costimulates activated human B-cell proliferation and, with CD40L, induces IgM, IgG1, and IgA secretion via IL2RB-dependent signaling. | Purified human B cells; in vitro culture | Armitage et al. 1995, J Immunol, doi:10.4049/jimmunol.154.2.483; anti-IL-2Rβ blocks IL-15-driven B-cell proliferation; Park et al. 2004, J Immunol, doi:10.4049/jimmunol.173.11.6676 (armitage1995il15hasstimulatory pages 4-5, park2004folliculardendriticcells pages 1-2) |
| BP | positive regulation of neutrophil survival / phagocytosis / adhesion / chemotaxis | IL-15 directly delays neutrophil apoptosis and enhances phagocytosis, adhesion, IL-8 production, and in vivo recruitment, supporting specific neutrophil-focused process annotations rather than broad leukocyte proliferation terms. | Human neutrophils; in vivo recruitment models | Bouchard et al. 2004, J Leukoc Biol, doi:10.1189/jlb.1103585; Ratthé & Girard 2004, J Leukoc Biol, doi:10.1189/jlb.0605298; Pelletier & Girard 2005, Clin Exp Immunol, doi:10.1111/j.1365-2249.2005.02861.x (cassatella2000interleukin15andits pages 3-4, pelletier2005interleukin‐15increasesneutrophil pages 9-11) |
| CC | extracellular region / secretory pathway localization (48-aa isoform) | The 48-aa long signal peptide isoform enters ER/Golgi trafficking and is the major secretable form, although some molecules are inefficiently translocated and degraded. | COS cells; GFP chimeras; biochemical trafficking assays | Tagaya et al. 1997, PNAS, doi:10.1073/pnas.94.26.14444; ~85% of LSP-GFP fluorescent cells showed ER staining; Kurys et al. 2000, J Biol Chem, doi:10.1074/jbc.M002373200 (tagaya1997generationofsecretable pages 4-5, kurys2000thelongsignal pages 4-5) |
| CC | cytoplasm / nucleus localization (21-aa isoform) | The 21-aa short signal peptide isoform is largely nonsecreted and localizes to cytoplasmic and nuclear compartments, supporting isoform-specific intracellular annotations. | COS cells; confocal microscopy; fusion constructs | Tagaya et al. 1997, PNAS, doi:10.1073/pnas.94.26.14444; Kurys et al. 2000, J Biol Chem, doi:10.1074/jbc.M002373200; Bergamaschi et al. 2009, J Immunol, doi:10.4049/jimmunol.0900693 (tagaya1997generationofsecretable pages 1-2, kurys2000thelongsignal pages 1-1) |
| Curation note | caveats for GO curation | Prefer specific terms supported by direct assays (cytokine activity, IL15RA binding, trans-presentation, NK/CD8/B/neutrophil processes, JAK/STAT signaling, isoform-localization) and avoid generic “protein binding,” broad “cell population proliferation,” or over-broad immune/developmental annotations unless directly tested in the relevant lineage/context. | GO curation synthesis from evidence above | Specific receptor/functional evidence comes from Bernard 2004, Tagaya 1997, Kurys 2000, Armitage 1995, Skariah 2024, and neutrophil/NK studies above; broad claims should not be inferred beyond assayed cell types or delivery modes (bernard2004identificationofan pages 1-2, tagaya1997generationofsecretable pages 4-5) |
Table: This table summarizes GO-relevant evidence for human IL15 (UniProt P40933), linking molecular function, biological process, and cellular component annotations to primary mechanistic studies and a recent 2024 review. It is designed to support concise, evidence-based curation and highlight important annotation caveats.
References
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id: P40933
gene_symbol: IL15
product_type: PROTEIN
status: COMPLETE
taxon:
id: NCBITaxon:9606
label: Homo sapiens
aliases:
- IL-15
description: >-
Interleukin-15 is a cytokine that plays a major role in the development of
inflammatory and protective immune responses. It stimulates proliferation
of natural killer cells, T-cells, and B-cells, and promotes secretion of
cytokines. Unlike most cytokines, IL15 is expressed in association with its
high affinity receptor IL15RA on the cell surface (trans-presentation) and
signals through the IL2RB/IL2RG receptor complex, triggering JAK1/JAK3
phosphorylation and STAT3/STAT5 activation. Two isoforms exist: IL15-S48AA
(secreted) and IL15-S21AA (intracellular, localized to cytoplasm and nucleus).
existing_annotations:
# === IBA (Phylogenetic) Annotations ===
- term:
id: GO:0001819
label: positive regulation of cytokine production
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
ACCEPT: IL15 stimulates cytokine production. UniProt states IL15 "promotes
the secretion of several cytokines" and "induces the production of IL8 and
monocyte chemotactic protein 1/CCL2" in monocytes.
action: ACCEPT
- term:
id: GO:0050778
label: positive regulation of immune response
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
ACCEPT: IL15 positively regulates immune responses by stimulating NK cells,
T-cells, and B-cells. UniProt: "plays a major role in the development of
inflammatory and protective immune responses to microbial invaders and parasites."
action: ACCEPT
- term:
id: GO:0005125
label: cytokine activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
ACCEPT: IL15 is definitively a cytokine. UniProt RecName is "Interleukin-15"
and function description begins "Cytokine that plays a major role..."
action: ACCEPT
- term:
id: GO:0005615
label: extracellular space
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
ACCEPT: IL15 (isoform S48AA) is secreted. UniProt SUBCELLULAR LOCATION
states "Isoform IL15-S48AA: Secreted."
action: ACCEPT
- term:
id: GO:0042102
label: positive regulation of T cell proliferation
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
ACCEPT: IL15 stimulates T cell proliferation. UniProt: "Stimulates the
proliferation of natural killer cells, T-cells and B-cells."
action: ACCEPT
- term:
id: GO:0042119
label: neutrophil activation
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
ACCEPT: IL15 activates neutrophils. PMID:15123770 cited in UniProt shows
IL15 enhances neutrophil phagocytosis.
action: ACCEPT
# === IEA (Electronic) Annotations ===
- term:
id: GO:0005125
label: cytokine activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: >-
ACCEPT: Redundant with IBA annotation but correct. IL15 has cytokine activity.
action: ACCEPT
- term:
id: GO:0005126
label: cytokine receptor binding
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: >-
ACCEPT: IL15 binds cytokine receptors. UniProt INTERACTION section shows
IL15 binds IL15RA and IL2RB. This is core to its function.
action: ACCEPT
- term:
id: GO:0005576
label: extracellular region
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: >-
ACCEPT: IL15 is found in extracellular region when secreted (isoform S48AA).
action: ACCEPT
- term:
id: GO:0005615
label: extracellular space
evidence_type: IEA
original_reference_id: GO_REF:0000043
review:
summary: >-
ACCEPT: Redundant but correct. Secreted isoform found in extracellular space.
action: ACCEPT
- term:
id: GO:0005634
label: nucleus
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: >-
ACCEPT: UniProt states "Isoform IL15-S21AA: Cytoplasm. Nucleus." The
intracellular isoform localizes to the nucleus.
action: ACCEPT
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: >-
ACCEPT: UniProt states "Isoform IL15-S21AA: Cytoplasm." The intracellular
isoform localizes to cytoplasm.
action: ACCEPT
- term:
id: GO:0006955
label: immune response
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: >-
ACCEPT: IL15 functions in immune response. UniProt: "plays a major role in
the development of inflammatory and protective immune responses."
action: ACCEPT
- term:
id: GO:0008284
label: positive regulation of cell population proliferation
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: >-
KEEP_AS_NON_CORE: This is true but overly general. IL15 stimulates
proliferation of specific immune cell types (NK, T, B cells), not general
cell proliferation. More specific terms are preferred.
action: KEEP_AS_NON_CORE
# === IPI (Physical Interaction) Annotations ===
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16284400
review:
summary: >-
MARK_AS_OVER_ANNOTATED: "Protein binding" is uninformative. The specific
interaction (IL15 binds IL15RA) is better captured by "cytokine receptor
binding" (GO:0005126). Per curation guidelines, avoid generic "protein binding."
action: MARK_AS_OVER_ANNOTATED
supported_by:
- reference_id: PMID:16284400
supporting_text: Nov 11. Soluble interleukin-15 receptor alpha (IL-15R
alpha)-sushi as a selective and potent agonist of IL-15 action
through IL-15R beta/gamma.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:23104097
review:
summary: >-
MARK_AS_OVER_ANNOTATED: Same as above - "protein binding" is uninformative.
The IL15-receptor interaction is better captured by specific MF terms.
action: MARK_AS_OVER_ANNOTATED
supported_by:
- reference_id: PMID:23104097
supporting_text: Mechanistic and structural insight into the
functional dichotomy between IL-2 and IL-15.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:25416956
review:
summary: >-
MARK_AS_OVER_ANNOTATED: High-throughput interactome study. Generic protein
binding is not informative for cytokine function annotation.
action: MARK_AS_OVER_ANNOTATED
# === Ensembl/Mouse Orthologue Transfer ===
supported_by:
- reference_id: PMID:25416956
supporting_text: A proteome-scale map of the human interactome
network.
- term:
id: GO:0120163
label: negative regulation of cold-induced thermogenesis
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
KEEP_AS_NON_CORE: Transferred from mouse. PMID:27684068 shows IL15 deficiency
enhances thermogenic function of adipose tissue. This is a secondary/pleiotropic
effect, not a core function of IL15 as a cytokine.
action: KEEP_AS_NON_CORE
# === HPA Subcellular Localization ===
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: IDA
original_reference_id: GO_REF:0000052
review:
summary: >-
ACCEPT: HPA immunofluorescence data. Consistent with UniProt statement that
isoform IL15-S21AA localizes to nucleus.
action: ACCEPT
- term:
id: GO:0016607
label: nuclear speck
evidence_type: IDA
original_reference_id: GO_REF:0000052
review:
summary: >-
ACCEPT: HPA immunofluorescence data showing nuclear speck localization.
More specific than general nucleus annotation.
action: ACCEPT
# === NAS (Non-traceable Author Statement) ===
- term:
id: GO:0007259
label: cell surface receptor signaling pathway via JAK-STAT
evidence_type: NAS
original_reference_id: PMID:23104097
review:
summary: >-
ACCEPT: Core pathway for IL15 signaling. UniProt explicitly states IL15
"triggers the phosphorylation of JAK1 and JAK3 and the recruitment and
subsequent phosphorylation of...STAT3 and STAT5."
action: ACCEPT
supported_by:
- reference_id: PMID:23104097
supporting_text: Mechanistic and structural insight into the
functional dichotomy between IL-2 and IL-15.
- term:
id: GO:0035723
label: interleukin-15-mediated signaling pathway
evidence_type: NAS
original_reference_id: PMID:23104097
review:
summary: >-
ACCEPT: This IS the core signaling pathway for IL15. The gene product is
literally the ligand that initiates this pathway.
action: ACCEPT
supported_by:
- reference_id: PMID:23104097
supporting_text: Mechanistic and structural insight into the
functional dichotomy between IL-2 and IL-15.
- term:
id: GO:0043066
label: negative regulation of apoptotic process
evidence_type: NAS
original_reference_id: PMID:10627470
review:
summary: >-
KEEP_AS_NON_CORE: PMID:10627470 shows IL15 promotes multiple myeloma cell
survival. Anti-apoptotic effects are downstream of cytokine signaling, not
a core function. May be context-dependent.
action: KEEP_AS_NON_CORE
supported_by:
- reference_id: PMID:10627470
supporting_text: Expression of functional interleukin-15 receptor and
autocrine production of interleukin-15 as mechanisms of tumor
propagation in multiple myeloma.
- term:
id: GO:0043410
label: positive regulation of MAPK cascade
evidence_type: NAS
original_reference_id: PMID:23104097
review:
summary: >-
ACCEPT: IL15 activates MAPK in addition to JAK-STAT. This is part of its
signaling mechanism.
action: ACCEPT
# === IDA (Direct Assay) Annotations ===
supported_by:
- reference_id: PMID:23104097
supporting_text: Mechanistic and structural insight into the
functional dichotomy between IL-2 and IL-15.
- term:
id: GO:0005125
label: cytokine activity
evidence_type: IDA
original_reference_id: PMID:9097905
review:
summary: >-
ACCEPT: Direct experimental evidence for cytokine activity. PMID:9097905
demonstrates IL15 function in HIV context.
action: ACCEPT
supported_by:
- reference_id: PMID:9097905
supporting_text: Role of IL-15 in HIV-1-associated
hypergammaglobulinaemia.
- term:
id: GO:0005615
label: extracellular space
evidence_type: IDA
original_reference_id: PMID:9097905
review:
summary: >-
ACCEPT: Direct evidence IL15 is secreted and found extracellularly.
action: ACCEPT
supported_by:
- reference_id: PMID:9097905
supporting_text: Role of IL-15 in HIV-1-associated
hypergammaglobulinaemia.
- term:
id: GO:0035723
label: interleukin-15-mediated signaling pathway
evidence_type: IDA
original_reference_id: PMID:9097905
review:
summary: >-
ACCEPT: Direct evidence for IL15-mediated signaling.
action: ACCEPT
supported_by:
- reference_id: PMID:9097905
supporting_text: Role of IL-15 in HIV-1-associated
hypergammaglobulinaemia.
- term:
id: GO:0030225
label: macrophage differentiation
evidence_type: IDA
original_reference_id: PMID:24942581
review:
summary: >-
KEEP_AS_NON_CORE: PMID:24942581 shows CD4 ligation on monocytes triggers
macrophage differentiation enhanced by IL15. This is a downstream effect
of IL15 signaling, not a core function.
action: KEEP_AS_NON_CORE
supported_by:
- reference_id: PMID:24942581
supporting_text: CD4 ligation on human blood monocytes triggers
macrophage differentiation and enhances HIV infection.
- term:
id: GO:0035723
label: interleukin-15-mediated signaling pathway
evidence_type: IDA
original_reference_id: PMID:15123770
review:
summary: >-
ACCEPT: Direct evidence from study on IL15 signaling in neutrophils.
action: ACCEPT
supported_by:
- reference_id: PMID:15123770
supporting_text: 'Interleukin-15 enhances human neutrophil phagocytosis
by a Syk-dependent mechanism: importance of the IL-15Ralpha chain.'
- term:
id: GO:0050731
label: positive regulation of peptidyl-tyrosine phosphorylation
evidence_type: IDA
original_reference_id: PMID:15123770
review:
summary: >-
ACCEPT: IL15 positively regulates tyrosine phosphorylation through JAK-STAT
pathway activation. This is mechanistically correct - IL15 binding triggers
JAK kinase activation which phosphorylates STATs.
action: ACCEPT
supported_by:
- reference_id: PMID:15123770
supporting_text: 'Interleukin-15 enhances human neutrophil phagocytosis
by a Syk-dependent mechanism: importance of the IL-15Ralpha chain.'
- term:
id: GO:0050766
label: positive regulation of phagocytosis
evidence_type: IDA
original_reference_id: PMID:15123770
review:
summary: >-
ACCEPT: PMID:15123770 title is "Interleukin-15 enhances human neutrophil
phagocytosis." Direct experimental evidence.
action: ACCEPT
supported_by:
- reference_id: PMID:15123770
supporting_text: 'Interleukin-15 enhances human neutrophil phagocytosis
by a Syk-dependent mechanism: importance of the IL-15Ralpha chain.'
- term:
id: GO:0042119
label: neutrophil activation
evidence_type: IDA
original_reference_id: PMID:15123770
review:
summary: >-
ACCEPT: PMID:15123770 demonstrates IL15 activates neutrophils (enhances
phagocytosis). Consistent with IBA annotation.
action: ACCEPT
# === ISS (Sequence Similarity) ===
supported_by:
- reference_id: PMID:15123770
supporting_text: 'Interleukin-15 enhances human neutrophil phagocytosis
by a Syk-dependent mechanism: importance of the IL-15Ralpha chain.'
- term:
id: GO:0120163
label: negative regulation of cold-induced thermogenesis
evidence_type: ISS
original_reference_id: PMID:27684068
review:
summary: >-
KEEP_AS_NON_CORE: Redundant with IEA annotation. Pleiotropic effect via
adipose tissue regulation, not core cytokine function.
action: KEEP_AS_NON_CORE
# === TAS/Reactome Annotations ===
supported_by:
- reference_id: PMID:27684068
supporting_text: eCollection 2016. Deficiency of Interleukin-15
Confers Resistance to Obesity by Diminishing Inflammation and
Enhancing the Thermogenic Function of Adipose Tissues.
- term:
id: GO:0005576
label: extracellular region
evidence_type: TAS
original_reference_id: Reactome:R-HSA-449115
review:
summary: >-
ACCEPT: Reactome pathway shows IL15:IL15RA complex formation. IL15 is
found extracellularly.
action: ACCEPT
- term:
id: GO:0005576
label: extracellular region
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8983298
review:
summary: >-
ACCEPT: Reactome pathway step. Redundant but correct.
action: ACCEPT
- term:
id: GO:0005576
label: extracellular region
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8983300
review:
summary: >-
ACCEPT: Reactome pathway step.
action: ACCEPT
- term:
id: GO:0005576
label: extracellular region
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8983307
review:
summary: >-
ACCEPT: Reactome pathway step.
action: ACCEPT
- term:
id: GO:0005576
label: extracellular region
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8983335
review:
summary: >-
ACCEPT: Reactome pathway step showing receptor complex translocation.
action: ACCEPT
- term:
id: GO:0005576
label: extracellular region
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8983371
review:
summary: >-
ACCEPT: Reactome pathway step.
action: ACCEPT
- term:
id: GO:0005576
label: extracellular region
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8983374
review:
summary: >-
ACCEPT: Reactome pathway step.
action: ACCEPT
- term:
id: GO:0005576
label: extracellular region
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8983378
review:
summary: >-
ACCEPT: Reactome pathway step.
action: ACCEPT
- term:
id: GO:0005576
label: extracellular region
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8983384
review:
summary: >-
ACCEPT: Reactome pathway step.
action: ACCEPT
- term:
id: GO:0005768
label: endosome
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8983335
review:
summary: >-
ACCEPT: Reactome shows IL15 receptor complex translocates to endosome
during signaling.
action: ACCEPT
- term:
id: GO:0035723
label: interleukin-15-mediated signaling pathway
evidence_type: IDA
original_reference_id: PMID:24942581
review:
summary: >-
ACCEPT: Direct evidence for IL15-mediated signaling pathway.
action: ACCEPT
# === GO:0007260 (Phosphorylation - Previously Reviewed) ===
supported_by:
- reference_id: PMID:24942581
supporting_text: CD4 ligation on human blood monocytes triggers
macrophage differentiation and enhances HIV infection.
- term:
id: GO:0007260
label: tyrosine phosphorylation of STAT protein
evidence_type: IDA
original_reference_id: PMID:12244150
review:
summary: >-
OVER-ANNOTATION: IL15 is a cytokine that INDUCES STAT phosphorylation via
the
JAK-STAT signaling pathway, but does NOT catalyze the phosphorylation reaction
itself. Cytokines are signaling ligands that trigger downstream JAK kinases
to
phosphorylate STAT proteins. IL15 has no kinase activity. The appropriate
term
is GO:0042531 "positive regulation of tyrosine phosphorylation of STAT protein".
action: MODIFY
proposed_replacement_terms:
- id: GO:0042531
label: positive regulation of tyrosine phosphorylation of STAT protein
# === Additional IDA Annotations ===
supported_by:
- reference_id: PMID:12244150
supporting_text: IL-21 up-regulates the expression of genes associated
with innate immunity and Th1 response.
- term:
id: GO:0032740
label: positive regulation of interleukin-17 production
evidence_type: IDA
original_reference_id: PMID:16482511
review:
summary: >-
ACCEPT: IL15 promotes IL-17 production. This is part of its cytokine
production stimulation function.
action: ACCEPT
supported_by:
- reference_id: PMID:16482511
supporting_text: Divergent effects of IL-12 and IL-23 on the
production of IL-17 by human T cells.
- term:
id: GO:0034105
label: positive regulation of tissue remodeling
evidence_type: IC
original_reference_id: PMID:16482511
review:
summary: >-
KEEP_AS_NON_CORE: Inferred from GO:0032740 (IL-17 production). Tissue
remodeling is a downstream consequence of cytokine signaling, several
steps removed from IL15's direct activity.
action: KEEP_AS_NON_CORE
supported_by:
- reference_id: PMID:16482511
supporting_text: Divergent effects of IL-12 and IL-23 on the
production of IL-17 by human T cells.
- term:
id: GO:0050729
label: positive regulation of inflammatory response
evidence_type: IC
original_reference_id: PMID:16482511
review:
summary: >-
ACCEPT: Inferred from IL-17 production. IL15 promotes inflammation through
multiple mechanisms including cytokine induction. UniProt states IL15 is
involved in "inflammatory...immune responses."
action: ACCEPT
# === Additional Location Annotations ===
supported_by:
- reference_id: PMID:16482511
supporting_text: Divergent effects of IL-12 and IL-23 on the
production of IL-17 by human T cells.
- term:
id: GO:0005576
label: extracellular region
evidence_type: NAS
original_reference_id: PMID:14718574
review:
summary: >-
ACCEPT: Human plasma proteome study detected IL15 extracellularly.
action: ACCEPT
supported_by:
- reference_id: PMID:14718574
supporting_text: 'Epub 2004 Jan 12. The human plasma proteome: a nonredundant
list developed by combination of four separate sources.'
- term:
id: GO:0005615
label: extracellular space
evidence_type: TAS
original_reference_id: PMID:10851076
review:
summary: >-
ACCEPT: IL15 found in extracellular space.
action: ACCEPT
supported_by:
- reference_id: PMID:10851076
supporting_text: Altered natural killer cell differentiation in CD34+
progenitors from chronic myeloid leukemia patients.
- term:
id: GO:0005737
label: cytoplasm
evidence_type: TAS
original_reference_id: PMID:10851076
review:
summary: >-
ACCEPT: IL15-S21AA isoform is cytoplasmic per UniProt.
action: ACCEPT
supported_by:
- reference_id: PMID:10851076
supporting_text: Altered natural killer cell differentiation in CD34+
progenitors from chronic myeloid leukemia patients.
- term:
id: GO:0005768
label: endosome
evidence_type: TAS
original_reference_id: PMID:10851076
review:
summary: >-
ACCEPT: IL15 traffics through endosomal pathway.
action: ACCEPT
supported_by:
- reference_id: PMID:10851076
supporting_text: Altered natural killer cell differentiation in CD34+
progenitors from chronic myeloid leukemia patients.
- term:
id: GO:0005794
label: Golgi apparatus
evidence_type: TAS
original_reference_id: PMID:10851076
review:
summary: >-
ACCEPT: IL15 transits through Golgi during secretory pathway.
action: ACCEPT
# === Additional Process Annotations ===
supported_by:
- reference_id: PMID:10851076
supporting_text: Altered natural killer cell differentiation in CD34+
progenitors from chronic myeloid leukemia patients.
- term:
id: GO:0006955
label: immune response
evidence_type: TAS
original_reference_id: PMID:8178155
review:
summary: >-
ACCEPT: Original cloning paper. IL15 functions in immune response.
action: ACCEPT
supported_by:
- reference_id: PMID:8178155
supporting_text: Cloning of a T cell growth factor that interacts with
the beta chain of the interleukin-2 receptor.
- term:
id: GO:0007165
label: signal transduction
evidence_type: TAS
original_reference_id: PMID:8178155
review:
summary: >-
KEEP_AS_NON_CORE: Very general term. IL15 does participate in signal
transduction but more specific pathway terms are preferred.
action: KEEP_AS_NON_CORE
supported_by:
- reference_id: PMID:8178155
supporting_text: Cloning of a T cell growth factor that interacts with
the beta chain of the interleukin-2 receptor.
- term:
id: GO:0007267
label: cell-cell signaling
evidence_type: TAS
original_reference_id: PMID:7759105
review:
summary: >-
ACCEPT: IL15 mediates cell-cell signaling via trans-presentation (IL15
on one cell presents to receptors on another cell).
action: ACCEPT
supported_by:
- reference_id: PMID:7759105
supporting_text: Chromosomal assignment and genomic structure of Il15.
- term:
id: GO:0008284
label: positive regulation of cell population proliferation
evidence_type: TAS
original_reference_id: PMID:10851076
review:
summary: >-
KEEP_AS_NON_CORE: True but overly general. IL15 stimulates specific
immune cell proliferation. More specific terms preferred.
action: KEEP_AS_NON_CORE
supported_by:
- reference_id: PMID:10851076
supporting_text: Altered natural killer cell differentiation in CD34+
progenitors from chronic myeloid leukemia patients.
# === Falcon-supported new annotations ===
- term:
id: GO:0009986
label: cell surface
evidence_type: NAS
review:
summary: >-
NEW: IL15 is presented at the cell surface as an IL15:IL15RA complex
during trans-presentation to IL2RB/IL2RG-bearing neighboring cells.
action: NEW
reason: >-
Core function synthesis includes cell-surface trans-presentation, but
the current GOA-derived cellular component annotations do not include
cell surface.
supported_by:
- reference_id: file:human/IL15/IL15-deep-research-falcon.md
supporting_text: >-
IL-15 is commonly delivered by **trans-presentation**: an
“IL-15-presenting” cell displays a **membrane IL-15/IL-15Rα complex**
that stimulates neighboring lymphocytes through **IL2RB/IL2RG**.
- term:
id: GO:0016170
label: interleukin-15 receptor binding
evidence_type: NAS
review:
summary: >-
NEW: IL15 binds its private high-affinity receptor chain IL15RA and then
recruits IL2RB/IL2RG for signaling. This is more informative than generic
protein binding and more specific than the existing cytokine receptor
binding annotation.
action: NEW
reason: >-
Specific IL15 receptor binding is a core molecular function supported by
biochemical, structural and trans-presentation literature but is absent
from the current GOA-derived annotations.
supported_by:
- reference_id: file:human/IL15/IL15-deep-research-falcon.md
supporting_text: >-
Human IL-15 binds IL15RA with very high affinity and mutational
mapping identified key IL-15 residues in helices B/C required for
IL15RA engagement.
- term:
id: GO:0032819
label: positive regulation of natural killer cell proliferation
evidence_type: NAS
review:
summary: >-
NEW: IL15 is a central positive regulator of NK-cell proliferation,
activation and maintenance. This more specific term should complement
the broad cell population proliferation annotations kept as non-core.
action: NEW
reason: >-
Existing annotations include only broad proliferation terms and miss the
key NK-cell-specific proliferative activity.
supported_by:
- reference_id: file:human/IL15/IL15-deep-research-falcon.md
supporting_text: >-
IL-15 is essential for NK-cell development and potently promotes NK
proliferation, activation, granzyme/perforin expression,
degranulation, and inflammatory cytotoxicity.
- term:
id: GO:0032816
label: positive regulation of natural killer cell activation
evidence_type: NAS
review:
summary: >-
NEW: IL15 positively regulates NK-cell activation, including effector
programs linked to cytotoxicity.
action: NEW
reason: >-
NK activation is a specific, well-established immune-cell outcome of
IL15 signaling that is not represented by the existing broad immune
response annotations.
supported_by:
- reference_id: file:human/IL15/IL15-deep-research-falcon.md
supporting_text: >-
IL-15 is essential for NK-cell development and potently promotes NK
proliferation, activation, granzyme/perforin expression,
degranulation, and inflammatory cytotoxicity.
- term:
id: GO:0030890
label: positive regulation of B cell proliferation
evidence_type: NAS
review:
summary: >-
NEW: IL15 costimulates activated B-cell proliferation, providing a
specific B-cell term to replace overly broad cell population
proliferation when B-cell evidence is intended.
action: NEW
reason: >-
The review currently notes B-cell proliferation only in summaries and
broad proliferation annotations; a specific B-cell BP term is warranted.
supported_by:
- reference_id: file:human/IL15/IL15-deep-research-falcon.md
supporting_text: >-
IL-15 costimulates activated human B-cell proliferation and, with
CD40L, induces IgM, IgG1, and IgA secretion via IL2RB-dependent
signaling.
- term:
id: GO:0002639
label: positive regulation of immunoglobulin production
evidence_type: NAS
review:
summary: >-
NEW: In activated B cells, IL15 can promote immunoglobulin secretion in
the appropriate costimulatory context.
action: NEW
reason: >-
Falcon research identified direct B-cell evidence for immunoglobulin
production that is absent from the current annotation set.
supported_by:
- reference_id: file:human/IL15/IL15-deep-research-falcon.md
supporting_text: >-
IL-15 costimulates activated human B-cell proliferation and, with
CD40L, induces IgM, IgG1, and IgA secretion via IL2RB-dependent
signaling.
- term:
id: GO:0090023
label: positive regulation of neutrophil chemotaxis
evidence_type: NAS
review:
summary: >-
NEW: IL15 promotes neutrophil recruitment/chemotaxis in addition to the
already accepted neutrophil activation and phagocytosis annotations.
action: NEW
reason: >-
The current annotation set captures neutrophil activation and
phagocytosis but misses the more specific neutrophil recruitment
phenotype supported by the literature synthesis.
supported_by:
- reference_id: file:human/IL15/IL15-deep-research-falcon.md
supporting_text: >-
IL-15 directly delays neutrophil apoptosis and enhances phagocytosis,
adhesion, IL-8 production, and in vivo recruitment, supporting
specific neutrophil-focused process annotations rather than broad
leukocyte proliferation terms.
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with
GO terms
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000043
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword
mapping
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular
Location vocabulary mapping
findings: []
- id: GO_REF:0000052
title: Gene Ontology annotation based on curation of immunofluorescence data
findings: []
- id: GO_REF:0000107
title: Automatic transfer of experimentally verified manual GO annotation
data to orthologs using Ensembl Compara
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning
models
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:10627470
title: Expression of functional interleukin-15 receptor and autocrine
production of interleukin-15 as mechanisms of tumor propagation in
multiple myeloma.
findings:
- statement: IL15 promotes myeloma cell survival through autocrine
signaling
- id: PMID:10851076
title: Altered natural killer cell differentiation in CD34+ progenitors from
chronic myeloid leukemia patients.
findings: []
- id: PMID:12244150
title: IL-21 up-regulates the expression of genes associated with innate
immunity and Th1 response.
findings:
- statement: Study on IL-21 showing STAT3 activation; IL15 cited for
comparison
- id: PMID:14718574
title: 'The human plasma proteome: a nonredundant list developed by combination
of four separate sources.'
findings: []
- id: PMID:15123770
title: 'Interleukin-15 enhances human neutrophil phagocytosis by a Syk-dependent
mechanism: importance of the IL-15Ralpha chain.'
findings:
- statement: IL15 enhances neutrophil phagocytosis
- statement: Mechanism involves Syk kinase and requires IL-15Ralpha
- id: PMID:16284400
title: "Soluble interleukin-15 receptor alpha (IL-15R alpha)-sushi as a selective and potent agonist of IL-15 action through IL-15R beta/gamma. Hyperagonist IL-15 x IL-15R alpha fusion proteins."
findings: []
- id: PMID:16482511
title: Divergent effects of IL-12 and IL-23 on the production of IL-17 by
human T cells.
findings:
- statement: IL15 contributes to IL-17 production regulation
- id: PMID:23104097
title: Mechanistic and structural insight into the functional dichotomy
between IL-2 and IL-15.
findings:
- statement: Crystal structure of IL15 reveals signaling mechanism
- statement: IL15 and IL2 have distinct receptor engagement modes
- id: PMID:24942581
title: CD4 ligation on human blood monocytes triggers macrophage
differentiation and enhances HIV infection.
findings: []
- id: PMID:25416956
title: A proteome-scale map of the human interactome network.
findings: []
- id: PMID:27684068
title: Deficiency of Interleukin-15 Confers Resistance to Obesity by
Diminishing Inflammation and Enhancing the Thermogenic Function of Adipose
Tissues.
findings:
- statement: IL15 deficiency enhances thermogenesis - pleiotropic effect
- id: PMID:7759105
title: Chromosomal assignment and genomic structure of Il15.
findings: []
- id: PMID:8178155
title: Cloning of a T cell growth factor that interacts with the beta chain
of the interleukin-2 receptor.
findings:
- statement: Original identification of IL15 as T cell growth factor
- statement: IL15 signals through IL2RB (shared with IL-2)
- id: PMID:9097905
title: Role of IL-15 in HIV-1-associated hypergammaglobulinaemia.
findings: []
- id: Reactome:R-HSA-449115
title: IL15:IL15RA binds IL2RB:JAK1 and IL2RG:JAK3
findings: []
- id: Reactome:R-HSA-8983298
title: IL15 binds IL2RB:JAK1 and IL2RG:JAK3
findings: []
- id: Reactome:R-HSA-8983300
title: IL15RA:IL15:IL2RB:JAK1:IL2RG:JAK3 phosphorylates JAK3 and JAK1
findings: []
- id: Reactome:R-HSA-8983307
title: IL15 binds IL15RA
findings: []
- id: Reactome:R-HSA-8983335
title: IL15:IL15RA:IL2RB:JAK1:IL2RG:JAK3 translocates from the plasma
membrane to the endosome
findings: []
- id: Reactome:R-HSA-8983371
title: IL15:IL15RA:p-Y-IL2RB:p-Y-JAK1:p-Y-IL2RG:p-Y-JAK3 phosphorylates
STAT3 and STAT5
findings: []
- id: Reactome:R-HSA-8983374
title: p-Y-STAT3 and p-STAT5 dissociates from
IL15:IL15RA:IL2RB:p-JAK1:IL2RG:p-JAK3:p-Y-STAT3:p-STAT5
findings: []
- id: Reactome:R-HSA-8983378
title: IL15:IL15RA:p-Y-IL2RB:p-Y-JAK1:p-Y-IL2RG:p-Y-JAK3 binds STAT3 and
STAT5
findings: []
- id: Reactome:R-HSA-8983384
title: IL15:IL15RA:p-Y-IL2RB:p-Y-JAK1:p-Y-IL2RG:p-Y-JAK3:p-Y-SHC1:GRB2 binds
SOS1,SOS2
findings: []
- id: file:human/IL15/IL15-deep-research-falcon.md
title: Falcon deep research on IL15 GO-relevant functions
findings:
- statement: >-
IL15 functions primarily as an IL15RA-bound cytokine delivered by
trans-presentation or as soluble IL15/IL15RA heterodimer, rather than
only as free soluble cytokine.
supporting_text: >-
A central concept for GO curation is that IL-15 is not best modeled as
a freely diffusing cytokine under physiologic conditions. Instead,
IL-15 is commonly delivered by **trans-presentation**: an
“IL-15-presenting” cell displays a **membrane IL-15/IL-15Rα complex**
that stimulates neighboring lymphocytes through **IL2RB/IL2RG**.
- statement: >-
Specific receptor-binding terms and cell-type-specific immune process
terms are preferable to generic protein binding or broad proliferation
annotations.
supporting_text: >-
Prefer specific terms supported by direct assays (cytokine activity,
IL15RA binding, trans-presentation, NK/CD8/B/neutrophil processes,
JAK/STAT signaling, isoform-localization) and avoid generic “protein
binding,” broad “cell population proliferation,” or over-broad
immune/developmental annotations unless directly tested in the relevant
lineage/context.
- statement: >-
IL15 receptor signaling activates JAK1/JAK3 and STAT3/STAT5 downstream
of IL2RB/IL2RG.
supporting_text: >-
IL-15 receptor signaling activates JAK1/JAK3 and predominantly STAT5,
with STAT3 also activated in some T-cell/IEL contexts downstream of
IL2RB/IL2RG.
- statement: >-
IL15 isoforms support both secretory/extracellular localization and
intracellular cytoplasm/nucleus localization depending on the signal
peptide.
supporting_text: >-
The 21-aa short signal peptide isoform is largely nonsecreted and
localizes to cytoplasmic and nuclear compartments, supporting
isoform-specific intracellular annotations.
core_functions:
- molecular_function:
id: GO:0016170
label: interleukin-15 receptor binding
description: >-
IL15 binds IL15RA with high affinity and is commonly delivered as an
IL15:IL15RA complex to adjacent IL2RB/IL2RG-expressing cells, initiating
IL15-mediated JAK-STAT signaling.
supported_by:
- reference_id: file:human/IL15/IL15-deep-research-falcon.md
supporting_text: >-
Human IL-15 binds IL15RA with very high affinity and mutational mapping
identified key IL-15 residues in helices B/C required for IL15RA
engagement.
- reference_id: Reactome:R-HSA-8983307
supporting_text: IL15 binds IL15RA
directly_involved_in:
- id: GO:0035723
label: interleukin-15-mediated signaling pathway
- id: GO:0007259
label: cell surface receptor signaling pathway via JAK-STAT
- id: GO:0007267
label: cell-cell signaling
locations:
- id: GO:0005576
label: extracellular region
- id: GO:0009986
label: cell surface
- molecular_function:
id: GO:0005125
label: cytokine activity
description: >-
IL15 cytokine activity promotes proliferation, activation and maintenance
of specific lymphocyte populations, especially NK cells, T cells and
activated B cells, rather than indiscriminate cell population
proliferation.
supported_by:
- reference_id: file:human/IL15/IL15-deep-research-falcon.md
supporting_text: >-
IL-15 is essential for NK-cell development and potently promotes NK
proliferation, activation, granzyme/perforin expression, degranulation,
and inflammatory cytotoxicity.
- reference_id: file:human/IL15/IL15-deep-research-falcon.md
supporting_text: >-
IL-15 costimulates activated human B-cell proliferation and, with
CD40L, induces IgM, IgG1, and IgA secretion via IL2RB-dependent
signaling.
directly_involved_in:
- id: GO:0032819
label: positive regulation of natural killer cell proliferation
- id: GO:0032816
label: positive regulation of natural killer cell activation
- id: GO:0042102
label: positive regulation of T cell proliferation
- id: GO:0030890
label: positive regulation of B cell proliferation
- id: GO:0002639
label: positive regulation of immunoglobulin production
locations:
- id: GO:0005576
label: extracellular region
- molecular_function:
id: GO:0005125
label: cytokine activity
description: >-
IL15 also acts on innate immune cells, supporting neutrophil activation,
phagocytosis, cytokine/chemokine production and recruitment.
supported_by:
- reference_id: file:human/IL15/IL15-deep-research-falcon.md
supporting_text: >-
IL-15 directly delays neutrophil apoptosis and enhances phagocytosis,
adhesion, IL-8 production, and in vivo recruitment, supporting specific
neutrophil-focused process annotations rather than broad leukocyte
proliferation terms.
directly_involved_in:
- id: GO:0042119
label: neutrophil activation
- id: GO:0050766
label: positive regulation of phagocytosis
- id: GO:0090023
label: positive regulation of neutrophil chemotaxis
- id: GO:0001819
label: positive regulation of cytokine production
locations:
- id: GO:0005576
label: extracellular region