Interleukin-36 receptor antagonist (IL-36Ra), a secreted cytokine of the IL-1 family that serves as the sole antagonist of the IL-36 signaling axis. Member of IL-36 subfamily which includes three pro-inflammatory agonists (IL-36Ξ±/Ξ²/Ξ³) and this single antagonist. Encoded as 155-amino acid precursor that requires N-terminal proteolytic processing (removal of initiator Met and adjacent residues by neutrophil elastase) to achieve full antagonist activity - unprocessed form has drastically reduced receptor-binding capacity. Primary molecular function: competitive antagonist of IL-36 receptor (IL-36R/IL1RL2) - binds IL-36R with high affinity (Kd ~5-6 nM, much stronger than IL-36 agonists at 480-1800 nM) and slow dissociation rate, effectively blocking receptor occupancy. Critical mechanistic difference from agonists: IL-36Ra binding prevents recruitment of IL-1RAcP co-receptor, thereby blocking formation of functional signaling complex and preventing downstream MyD88-dependent activation of NF-ΞΊB and MAPK pathways. Structurally adopts Ξ²-trefoil fold characteristic of IL-1 family but lacks conventional signal peptide - secreted via unconventional pathways (likely microparticles/exosomes or during cell stress). Expressed in barrier tissues (skin keratinocytes, intestinal epithelium) and immune cells (monocytes, macrophages, dendritic cells); some cells constitutively express IL-36Ra to maintain basal antagonism preventing spontaneous inflammation. Essential role in immune homeostasis: loss-of-function mutations cause generalized pustular psoriasis (GPP/DITRA), a severe autoinflammatory skin disease with widespread sterile pustules and systemic inflammation, demonstrating that unopposed IL-36 signaling is life-threatening. Patients with processing-defective variant (p.V2F) that cannot be N-terminally cleaved have inactive IL-36Ra despite normal expression, proving proteolytic maturation is mandatory for function. Also implicated in other inflammatory conditions: rare IL36RN mutations found in severe Crohn's disease; IL-36Ra expressed in inflamed synovium in rheumatoid/psoriatic arthritis. Knockout mice show delayed wound healing due to excessive prolonged inflammation and neutrophil accumulation. IL-36Ra limits chemokine production (CXCL1, IL-8) and restrains Th17 responses. In 2022, FDA approved spesolimab (anti-IL-36R antibody) for GPP treatment, validating IL-36 pathway as therapeutic target and confirming IL-36Ra's natural protective role. Beyond immunity, potential context-dependent roles in cancer (may suppress pro-tumor inflammation in some settings). IL-38 (IL1F10) can also antagonize IL-36R but with more restricted activity. Overall, IL-36Ra is paradigmatic cytokine antagonist maintaining immune equilibrium at epithelial barriers by tightly blocking IL-36-driven inflammatory amplification.
Definition: The activity of binding to a cytokine receptor and blocking its activation by cognate agonist ligands, without inducing receptor signaling. Distinguished from classical receptor antagonism by cytokine-specific mechanisms (e.g., preventing co-receptor recruitment).
Justification: IL-36Ra and IL-1Ra exemplify a specific class of endogenous protein antagonists that block cytokine receptors through competitive binding. Current GO term 'cytokine receptor binding' doesn't capture the antagonist vs agonist distinction. IL-36Ra binds IL-36R but prevents signaling, contrasting with IL-36 agonists.
Parent term: cytokine receptor binding
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
| GO:0006955 immune response | IBA GO_REF:0000033 | ACCEPT | Summary: Phylogenetic inference for immune response. IL-36Ra regulates immune signaling by blocking IL-36 pathway. Reason: Core biological process - immune regulation is primary function. Supporting Evidence: file:human/IL36RN/IL36RN-deep-research-perplexity-lite.md See deep research file for comprehensive analysis |
| GO:0006954 inflammatory response | IBA GO_REF:0000033 | ACCEPT | Summary: Phylogenetic inference for inflammatory response. IL-36Ra is anti-inflammatory antagonist that dampens inflammation. Reason: Core function - negative regulation of inflammation via IL-36 blockade. |
| GO:0005615 extracellular space | IBA GO_REF:0000033 | ACCEPT | Summary: Phylogenetic inference for extracellular space localization. IL-36Ra functions extracellularly. Reason: Core localization - IL-36Ra is secreted and binds cell-surface receptors. |
| GO:0071222 cellular response to lipopolysaccharide | IBA GO_REF:0000033 | KEEP AS NON CORE | Summary: Cellular response to LPS from phylogeny. IL-36 pathway is activated by TLR stimuli including LPS. Reason: Indirect - IL-36Ra expression may be modulated by LPS but this is not core function. |
| GO:0002376 immune system process | IEA GO_REF:0000043 | ACCEPT | Summary: Electronic annotation for immune system process from keywords. IL-36Ra is immune regulator. Reason: Core biological role in immune regulation. |
| GO:0005125 cytokine activity | IEA GO_REF:0000120 | ACCEPT | Summary: Cytokine activity from UniProt family assignment. IL-36Ra is IL-1 family cytokine. Reason: IL-36Ra is a cytokine, though specifically an antagonist cytokine. |
| GO:0005149 interleukin-1 receptor binding | IEA GO_REF:0000002 | ACCEPT | Summary: IL-1 receptor binding from InterPro domain. IL-36Ra binds IL-36R which is an IL-1 family receptor. Reason: Accurate - IL-36R is IL-1Rrp2, an IL-1 receptor family member. Supporting Evidence: file:human/IL36RN/IL36RN-deep-research-falcon.md **ILβ36Ra** binds the ILβ36 receptor complex but does **not** support productive accessoryβprotein recruitment, thereby competitively inhibiting ILβ36 signaling. |
| GO:0005576 extracellular region | IEA GO_REF:0000044 | ACCEPT | Summary: Extracellular region from subcellular location mapping. IL-36Ra is secreted. Reason: Core localization. |
| GO:0005615 extracellular space | IEA GO_REF:0000120 | ACCEPT | Summary: Extracellular space from UniProt family annotation. Reason: Core localization - duplicate of IBA annotation but from different source. |
| GO:0005737 cytoplasm | IEA GO_REF:0000044 | KEEP AS NON CORE | Summary: Cytoplasm from subcellular location. IL-36Ra may have isoforms or intracellular pool. Reason: IL-36Ra acts extracellularly; cytoplasmic localization may reflect biosynthetic pool or alternative isoforms, not core function site. |
| GO:0006954 inflammatory response | IEA GO_REF:0000002 | ACCEPT | Summary: Inflammatory response from InterPro domain. Reason: Core process - duplicate of IBA annotation. |
| GO:0006955 immune response | IEA GO_REF:0000002 | ACCEPT | Summary: Immune response from InterPro domain. Reason: Core process - duplicate of IBA annotation. |
| GO:0007165 signal transduction | IEA GO_REF:0000108 | KEEP AS NON CORE | Summary: Signal transduction from TreeFam orthology. IL-36Ra modulates IL-36 signaling pathway. Reason: Too general - IL-36Ra is negative regulator, not a signal transducer per se. |
| GO:0045087 innate immune response | IEA GO_REF:0000043 | ACCEPT | Summary: Innate immune response from UniProt keywords. IL-36 pathway is innate immunity. Reason: IL-36Ra regulates innate immune responses at barrier tissues. |
| GO:0005515 protein binding | IPI PMID:16189514 Towards a proteome-scale map of the human protein-protein in... | MARK AS OVER ANNOTATED | Summary: Generic protein binding from a proteome-scale HTP PPI screen (not an IL-36Ra-specific functional study). Per CLAUDE.md, the generic "protein binding" term should be avoided when a more informative MF is available; IL-36Ra's specific MF is captured by GO:0005149 (interleukin-1 receptor binding) and GO:0005152 (interleukin-1 receptor antagonist activity), both already in existing_annotations. Supporting Evidence: PMID:16189514 Towards a proteome-scale map of the human protein-protein interaction network. |
| GO:0005515 protein binding | IPI PMID:25416956 A proteome-scale map of the human interactome network. | MARK AS OVER ANNOTATED | Summary: Generic protein binding from a proteome-scale HTP PPI screen. IL-36Ra's specific MF is captured by GO:0005149 and GO:0005152 elsewhere. Per CLAUDE.md, avoid generic "protein binding." Supporting Evidence: PMID:25416956 A proteome-scale map of the human interactome network. |
| GO:0005515 protein binding | IPI PMID:32296183 A reference map of the human binary protein interactome. | MARK AS OVER ANNOTATED | Summary: Generic protein binding from a proteome-scale HTP PPI screen (HuRI). IL-36Ra's specific MF is captured by GO:0005149 and GO:0005152 elsewhere. Per CLAUDE.md, avoid generic "protein binding." Supporting Evidence: PMID:32296183 Apr 8. A reference map of the human binary protein interactome. |
| GO:0032715 negative regulation of interleukin-6 production | IEA GO_REF:0000107 | ACCEPT | Summary: Negative regulation of IL-6 production from Ensembl orthology. IL-36Ra blocks IL-36-induced IL-6. Reason: Downstream effect of blocking IL-36 signaling - IL-36 induces IL-6, antagonist prevents this. |
| GO:0005615 extracellular space | NAS PMID:34365521 IL-36 cytokines in inflammatory and malignant diseases: not ... | ACCEPT | Summary: Non-traceable author statement for extracellular space from PMID:34365521 (recent IL-36 review). Reason: Core localization - IL-36Ra is secreted and functions extracellularly. Supporting Evidence: PMID:34365521 IL-36 cytokines in inflammatory and malignant diseases: not the new kid on the block anymore. |
| GO:0050728 negative regulation of inflammatory response | NAS PMID:34365521 IL-36 cytokines in inflammatory and malignant diseases: not ... | ACCEPT | Summary: Non-traceable author statement for negative regulation of inflammatory response. IL-36Ra is anti-inflammatory antagonist. Reason: Core function - IL-36Ra blocks pro-inflammatory IL-36 signaling, thus negatively regulating inflammation. Falcon-derived evidence provides direct experimental support showing cleaved IL-36Ra suppresses IL-36-driven chemokine production at barrier tissues. Supporting Evidence: PMID:34365521 IL-36 cytokines in inflammatory and malignant diseases: not the new kid on the block anymore. PMID:27101808 In both monolayer cultures and skin equivalents, full length IL-36Ra exhibited no antagonistic activity, whilst the IL-36Ra V2 truncation antagonised IL-36 agonist stimulation causing a significant reduction in both IL-8 and CCL20 expression |
| GO:0140368 decoy receptor complex | NAS PMID:34365521 IL-36 cytokines in inflammatory and malignant diseases: not ... | KEEP AS NON CORE | Summary: Decoy receptor complex annotation. IL-36Ra binds receptor without signaling - conceptually similar to decoy. Reason: Somewhat accurate conceptually (IL-36Ra blocks receptor like a decoy) but not technically a separate receptor complex. Better described as competitive antagonist. Supporting Evidence: PMID:34365521 IL-36 cytokines in inflammatory and malignant diseases: not the new kid on the block anymore. |
| GO:0005576 extracellular region | TAS Reactome:R-HSA-8940998 | ACCEPT | Summary: Traceable author statement for extracellular region from Reactome pathway. Reason: Core localization. |
| GO:0001960 negative regulation of cytokine-mediated signaling pathway | IMP PMID:23147407 The IL-36 receptor pathway regulates Aspergillus fumigatus-i... | ACCEPT | Summary: Mutant phenotype evidence for negative regulation of cytokine signaling from PMID:23147407 (IL-36Ra knockout study). Reason: Core function - IL-36Ra blocks IL-36 cytokine signaling pathway. Experimental knockout evidence. Mechanistically supported by Hawkes 2023 review (IL-36-chemokine-neutrophil axis) showing IL-36Ra competitively binds IL-36R blocking IL-1RAcP recruitment and downstream MyD88/NF-kB/MAPK signaling. Supporting Evidence: PMID:23147407 Dec 18. The IL-36 receptor pathway regulates Aspergillus fumigatus-induced Th1 and Th17 responses. PMID:38077370 IL-1 and IL-36 cytokines are negatively regulated by their receptor antagonist (IL-1Ra and IL-36Ra, respectively), via competitive binding for the receptor site |
| GO:0019732 antifungal humoral response | IMP PMID:23147407 The IL-36 receptor pathway regulates Aspergillus fumigatus-i... | KEEP AS NON CORE | Summary: Mutant phenotype for antifungal response. IL-36 pathway has role in antifungal immunity. Reason: IL-36 pathway contributes to antifungal defense; IL-36Ra modulates this but not core function. Supporting Evidence: PMID:23147407 Dec 18. The IL-36 receptor pathway regulates Aspergillus fumigatus-induced Th1 and Th17 responses. |
| GO:0032689 negative regulation of type II interferon production | IMP PMID:23147407 The IL-36 receptor pathway regulates Aspergillus fumigatus-i... | KEEP AS NON CORE | Summary: Mutant phenotype for negative regulation of IFN-Ξ³. IL-36Ra dampens Th1 responses. Reason: Downstream pleiotropic effect of blocking IL-36-driven immune activation. Supporting Evidence: PMID:23147407 Dec 18. The IL-36 receptor pathway regulates Aspergillus fumigatus-induced Th1 and Th17 responses. |
| GO:0032700 negative regulation of interleukin-17 production | IMP PMID:23147407 The IL-36 receptor pathway regulates Aspergillus fumigatus-i... | ACCEPT | Summary: Mutant phenotype for negative regulation of IL-17. IL-36Ra restrains Th17 responses. Reason: Well-established effect - IL-36 drives Th17 immunity, IL-36Ra blocks this. Important in psoriasis pathogenesis. Supporting Evidence: PMID:23147407 Dec 18. The IL-36 receptor pathway regulates Aspergillus fumigatus-induced Th1 and Th17 responses. |
| GO:0005152 interleukin-1 receptor antagonist activity | TAS PMID:10512743 IL1HY1: A novel interleukin-1 receptor antagonist gene. | ACCEPT | Summary: Traceable author statement for IL-1 receptor antagonist activity from PMID:10512743 (original IL-36Ra discovery paper). Reason: Core molecular function - IL-36Ra is IL-1 family receptor antagonist (IL-36 receptor antagonist). This is the seminal paper. Falcon-derived evidence (Macleod 2016) further confirms the antagonist requires N-terminal proteolytic maturation by neutrophil elastase to achieve full activity. Supporting Evidence: PMID:10512743 IL1HY1: A novel interleukin-1 receptor antagonist gene. PMID:27101808 The receptor antagonist (IL-36Ra) binds the same IL-36R but does not lead to accessory protein recruitment and the consequent signalling, thereby competing with and inhibiting the activity of the other IL-36 cytokines PMID:27101808 neutrophil elastase, but not other neutrophil derived proteases, cleaves IL-36Ra into its highly active antagonistic form |
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