IL36RN

UniProt ID: Q9UBH0
Organism: Homo sapiens
Review Status: COMPLETE
Aliases:
IL-36Ra IL-1F5 IL-36 receptor antagonist Interleukin-36 receptor antagonist
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Gene Description

Interleukin-36 receptor antagonist (IL-36Ra), a secreted cytokine of the IL-1 family that serves as the sole antagonist of the IL-36 signaling axis. Member of IL-36 subfamily which includes three pro-inflammatory agonists (IL-36Ξ±/Ξ²/Ξ³) and this single antagonist. Encoded as 155-amino acid precursor that requires N-terminal proteolytic processing (removal of initiator Met and adjacent residues by neutrophil elastase) to achieve full antagonist activity - unprocessed form has drastically reduced receptor-binding capacity. Primary molecular function: competitive antagonist of IL-36 receptor (IL-36R/IL1RL2) - binds IL-36R with high affinity (Kd ~5-6 nM, much stronger than IL-36 agonists at 480-1800 nM) and slow dissociation rate, effectively blocking receptor occupancy. Critical mechanistic difference from agonists: IL-36Ra binding prevents recruitment of IL-1RAcP co-receptor, thereby blocking formation of functional signaling complex and preventing downstream MyD88-dependent activation of NF-ΞΊB and MAPK pathways. Structurally adopts Ξ²-trefoil fold characteristic of IL-1 family but lacks conventional signal peptide - secreted via unconventional pathways (likely microparticles/exosomes or during cell stress). Expressed in barrier tissues (skin keratinocytes, intestinal epithelium) and immune cells (monocytes, macrophages, dendritic cells); some cells constitutively express IL-36Ra to maintain basal antagonism preventing spontaneous inflammation. Essential role in immune homeostasis: loss-of-function mutations cause generalized pustular psoriasis (GPP/DITRA), a severe autoinflammatory skin disease with widespread sterile pustules and systemic inflammation, demonstrating that unopposed IL-36 signaling is life-threatening. Patients with processing-defective variant (p.V2F) that cannot be N-terminally cleaved have inactive IL-36Ra despite normal expression, proving proteolytic maturation is mandatory for function. Also implicated in other inflammatory conditions: rare IL36RN mutations found in severe Crohn's disease; IL-36Ra expressed in inflamed synovium in rheumatoid/psoriatic arthritis. Knockout mice show delayed wound healing due to excessive prolonged inflammation and neutrophil accumulation. IL-36Ra limits chemokine production (CXCL1, IL-8) and restrains Th17 responses. In 2022, FDA approved spesolimab (anti-IL-36R antibody) for GPP treatment, validating IL-36 pathway as therapeutic target and confirming IL-36Ra's natural protective role. Beyond immunity, potential context-dependent roles in cancer (may suppress pro-tumor inflammation in some settings). IL-38 (IL1F10) can also antagonize IL-36R but with more restricted activity. Overall, IL-36Ra is paradigmatic cytokine antagonist maintaining immune equilibrium at epithelial barriers by tightly blocking IL-36-driven inflammatory amplification.

Proposed New Ontology Terms

cytokine receptor antagonist activity

Definition: The activity of binding to a cytokine receptor and blocking its activation by cognate agonist ligands, without inducing receptor signaling. Distinguished from classical receptor antagonism by cytokine-specific mechanisms (e.g., preventing co-receptor recruitment).

Justification: IL-36Ra and IL-1Ra exemplify a specific class of endogenous protein antagonists that block cytokine receptors through competitive binding. Current GO term 'cytokine receptor binding' doesn't capture the antagonist vs agonist distinction. IL-36Ra binds IL-36R but prevents signaling, contrasting with IL-36 agonists.

Parent term: cytokine receptor binding

Existing Annotations Review

GO Term Evidence Action Reason
GO:0006955 immune response
IBA
GO_REF:0000033
ACCEPT
Summary: Phylogenetic inference for immune response. IL-36Ra regulates immune signaling by blocking IL-36 pathway.
Reason: Core biological process - immune regulation is primary function.
Supporting Evidence:
file:human/IL36RN/IL36RN-deep-research-perplexity-lite.md
See deep research file for comprehensive analysis
GO:0006954 inflammatory response
IBA
GO_REF:0000033
ACCEPT
Summary: Phylogenetic inference for inflammatory response. IL-36Ra is anti-inflammatory antagonist that dampens inflammation.
Reason: Core function - negative regulation of inflammation via IL-36 blockade.
GO:0005615 extracellular space
IBA
GO_REF:0000033
ACCEPT
Summary: Phylogenetic inference for extracellular space localization. IL-36Ra functions extracellularly.
Reason: Core localization - IL-36Ra is secreted and binds cell-surface receptors.
GO:0071222 cellular response to lipopolysaccharide
IBA
GO_REF:0000033
KEEP AS NON CORE
Summary: Cellular response to LPS from phylogeny. IL-36 pathway is activated by TLR stimuli including LPS.
Reason: Indirect - IL-36Ra expression may be modulated by LPS but this is not core function.
GO:0002376 immune system process
IEA
GO_REF:0000043
ACCEPT
Summary: Electronic annotation for immune system process from keywords. IL-36Ra is immune regulator.
Reason: Core biological role in immune regulation.
GO:0005125 cytokine activity
IEA
GO_REF:0000120
ACCEPT
Summary: Cytokine activity from UniProt family assignment. IL-36Ra is IL-1 family cytokine.
Reason: IL-36Ra is a cytokine, though specifically an antagonist cytokine.
GO:0005149 interleukin-1 receptor binding
IEA
GO_REF:0000002
ACCEPT
Summary: IL-1 receptor binding from InterPro domain. IL-36Ra binds IL-36R which is an IL-1 family receptor.
Reason: Accurate - IL-36R is IL-1Rrp2, an IL-1 receptor family member.
Supporting Evidence:
file:human/IL36RN/IL36RN-deep-research-falcon.md
**IL‑36Ra** binds the IL‑36 receptor complex but does **not** support productive accessory‑protein recruitment, thereby competitively inhibiting IL‑36 signaling.
GO:0005576 extracellular region
IEA
GO_REF:0000044
ACCEPT
Summary: Extracellular region from subcellular location mapping. IL-36Ra is secreted.
Reason: Core localization.
GO:0005615 extracellular space
IEA
GO_REF:0000120
ACCEPT
Summary: Extracellular space from UniProt family annotation.
Reason: Core localization - duplicate of IBA annotation but from different source.
GO:0005737 cytoplasm
IEA
GO_REF:0000044
KEEP AS NON CORE
Summary: Cytoplasm from subcellular location. IL-36Ra may have isoforms or intracellular pool.
Reason: IL-36Ra acts extracellularly; cytoplasmic localization may reflect biosynthetic pool or alternative isoforms, not core function site.
GO:0006954 inflammatory response
IEA
GO_REF:0000002
ACCEPT
Summary: Inflammatory response from InterPro domain.
Reason: Core process - duplicate of IBA annotation.
GO:0006955 immune response
IEA
GO_REF:0000002
ACCEPT
Summary: Immune response from InterPro domain.
Reason: Core process - duplicate of IBA annotation.
GO:0007165 signal transduction
IEA
GO_REF:0000108
KEEP AS NON CORE
Summary: Signal transduction from TreeFam orthology. IL-36Ra modulates IL-36 signaling pathway.
Reason: Too general - IL-36Ra is negative regulator, not a signal transducer per se.
GO:0045087 innate immune response
IEA
GO_REF:0000043
ACCEPT
Summary: Innate immune response from UniProt keywords. IL-36 pathway is innate immunity.
Reason: IL-36Ra regulates innate immune responses at barrier tissues.
GO:0005515 protein binding
IPI
PMID:16189514
Towards a proteome-scale map of the human protein-protein in...
MARK AS OVER ANNOTATED
Summary: Generic protein binding from a proteome-scale HTP PPI screen (not an IL-36Ra-specific functional study). Per CLAUDE.md, the generic "protein binding" term should be avoided when a more informative MF is available; IL-36Ra's specific MF is captured by GO:0005149 (interleukin-1 receptor binding) and GO:0005152 (interleukin-1 receptor antagonist activity), both already in existing_annotations.
Supporting Evidence:
PMID:16189514
Towards a proteome-scale map of the human protein-protein interaction network.
GO:0005515 protein binding
IPI
PMID:25416956
A proteome-scale map of the human interactome network.
MARK AS OVER ANNOTATED
Summary: Generic protein binding from a proteome-scale HTP PPI screen. IL-36Ra's specific MF is captured by GO:0005149 and GO:0005152 elsewhere. Per CLAUDE.md, avoid generic "protein binding."
Supporting Evidence:
PMID:25416956
A proteome-scale map of the human interactome network.
GO:0005515 protein binding
IPI
PMID:32296183
A reference map of the human binary protein interactome.
MARK AS OVER ANNOTATED
Summary: Generic protein binding from a proteome-scale HTP PPI screen (HuRI). IL-36Ra's specific MF is captured by GO:0005149 and GO:0005152 elsewhere. Per CLAUDE.md, avoid generic "protein binding."
Supporting Evidence:
PMID:32296183
Apr 8. A reference map of the human binary protein interactome.
GO:0032715 negative regulation of interleukin-6 production
IEA
GO_REF:0000107
ACCEPT
Summary: Negative regulation of IL-6 production from Ensembl orthology. IL-36Ra blocks IL-36-induced IL-6.
Reason: Downstream effect of blocking IL-36 signaling - IL-36 induces IL-6, antagonist prevents this.
GO:0005615 extracellular space
NAS
PMID:34365521
IL-36 cytokines in inflammatory and malignant diseases: not ...
ACCEPT
Summary: Non-traceable author statement for extracellular space from PMID:34365521 (recent IL-36 review).
Reason: Core localization - IL-36Ra is secreted and functions extracellularly.
Supporting Evidence:
PMID:34365521
IL-36 cytokines in inflammatory and malignant diseases: not the new kid on the block anymore.
GO:0050728 negative regulation of inflammatory response
NAS
PMID:34365521
IL-36 cytokines in inflammatory and malignant diseases: not ...
ACCEPT
Summary: Non-traceable author statement for negative regulation of inflammatory response. IL-36Ra is anti-inflammatory antagonist.
Reason: Core function - IL-36Ra blocks pro-inflammatory IL-36 signaling, thus negatively regulating inflammation. Falcon-derived evidence provides direct experimental support showing cleaved IL-36Ra suppresses IL-36-driven chemokine production at barrier tissues.
Supporting Evidence:
PMID:34365521
IL-36 cytokines in inflammatory and malignant diseases: not the new kid on the block anymore.
PMID:27101808
In both monolayer cultures and skin equivalents, full length IL-36Ra exhibited no antagonistic activity, whilst the IL-36Ra V2 truncation antagonised IL-36 agonist stimulation causing a significant reduction in both IL-8 and CCL20 expression
GO:0140368 decoy receptor complex
NAS
PMID:34365521
IL-36 cytokines in inflammatory and malignant diseases: not ...
KEEP AS NON CORE
Summary: Decoy receptor complex annotation. IL-36Ra binds receptor without signaling - conceptually similar to decoy.
Reason: Somewhat accurate conceptually (IL-36Ra blocks receptor like a decoy) but not technically a separate receptor complex. Better described as competitive antagonist.
Supporting Evidence:
PMID:34365521
IL-36 cytokines in inflammatory and malignant diseases: not the new kid on the block anymore.
GO:0005576 extracellular region
TAS
Reactome:R-HSA-8940998
ACCEPT
Summary: Traceable author statement for extracellular region from Reactome pathway.
Reason: Core localization.
GO:0001960 negative regulation of cytokine-mediated signaling pathway
IMP
PMID:23147407
The IL-36 receptor pathway regulates Aspergillus fumigatus-i...
ACCEPT
Summary: Mutant phenotype evidence for negative regulation of cytokine signaling from PMID:23147407 (IL-36Ra knockout study).
Reason: Core function - IL-36Ra blocks IL-36 cytokine signaling pathway. Experimental knockout evidence. Mechanistically supported by Hawkes 2023 review (IL-36-chemokine-neutrophil axis) showing IL-36Ra competitively binds IL-36R blocking IL-1RAcP recruitment and downstream MyD88/NF-kB/MAPK signaling.
Supporting Evidence:
PMID:23147407
Dec 18. The IL-36 receptor pathway regulates Aspergillus fumigatus-induced Th1 and Th17 responses.
PMID:38077370
IL-1 and IL-36 cytokines are negatively regulated by their receptor antagonist (IL-1Ra and IL-36Ra, respectively), via competitive binding for the receptor site
GO:0019732 antifungal humoral response
IMP
PMID:23147407
The IL-36 receptor pathway regulates Aspergillus fumigatus-i...
KEEP AS NON CORE
Summary: Mutant phenotype for antifungal response. IL-36 pathway has role in antifungal immunity.
Reason: IL-36 pathway contributes to antifungal defense; IL-36Ra modulates this but not core function.
Supporting Evidence:
PMID:23147407
Dec 18. The IL-36 receptor pathway regulates Aspergillus fumigatus-induced Th1 and Th17 responses.
GO:0032689 negative regulation of type II interferon production
IMP
PMID:23147407
The IL-36 receptor pathway regulates Aspergillus fumigatus-i...
KEEP AS NON CORE
Summary: Mutant phenotype for negative regulation of IFN-Ξ³. IL-36Ra dampens Th1 responses.
Reason: Downstream pleiotropic effect of blocking IL-36-driven immune activation.
Supporting Evidence:
PMID:23147407
Dec 18. The IL-36 receptor pathway regulates Aspergillus fumigatus-induced Th1 and Th17 responses.
GO:0032700 negative regulation of interleukin-17 production
IMP
PMID:23147407
The IL-36 receptor pathway regulates Aspergillus fumigatus-i...
ACCEPT
Summary: Mutant phenotype for negative regulation of IL-17. IL-36Ra restrains Th17 responses.
Reason: Well-established effect - IL-36 drives Th17 immunity, IL-36Ra blocks this. Important in psoriasis pathogenesis.
Supporting Evidence:
PMID:23147407
Dec 18. The IL-36 receptor pathway regulates Aspergillus fumigatus-induced Th1 and Th17 responses.
GO:0005152 interleukin-1 receptor antagonist activity
TAS
PMID:10512743
IL1HY1: A novel interleukin-1 receptor antagonist gene.
ACCEPT
Summary: Traceable author statement for IL-1 receptor antagonist activity from PMID:10512743 (original IL-36Ra discovery paper).
Reason: Core molecular function - IL-36Ra is IL-1 family receptor antagonist (IL-36 receptor antagonist). This is the seminal paper. Falcon-derived evidence (Macleod 2016) further confirms the antagonist requires N-terminal proteolytic maturation by neutrophil elastase to achieve full activity.
Supporting Evidence:
PMID:10512743
IL1HY1: A novel interleukin-1 receptor antagonist gene.
PMID:27101808
The receptor antagonist (IL-36Ra) binds the same IL-36R but does not lead to accessory protein recruitment and the consequent signalling, thereby competing with and inhibiting the activity of the other IL-36 cytokines
PMID:27101808
neutrophil elastase, but not other neutrophil derived proteases, cleaves IL-36Ra into its highly active antagonistic form

Core Functions

Antagonist binding to IL-36 receptor (IL-36R/IL1RL2, an IL-1 receptor family member) with high affinity (Kd ~5-6 nM) to competitively block IL-36 agonist cytokines from activating the receptor. Unlike agonists, IL-36Ra binding prevents recruitment of IL-1RAcP co-receptor, thereby blocking MyD88/NF-ΞΊB/MAPK signaling cascade. IL-36Ra's defining molecular activity is antagonism, not generic receptor binding (PR

Supporting Evidence:
  • file:human/IL36RN/IL36RN-uniprot.txt
    IL-36Ra is competitive antagonist of IL-36 receptor with Kd ~5-6 nM, blocking IL-36 signaling. Loss of function causes generalized pustular psoriasis.
  • PMID:27101808
    The receptor antagonist (IL-36Ra) binds the same IL-36R but does not lead to accessory protein recruitment and the consequent signalling, thereby competing with and inhibiting the activity of the other IL-36 cytokines
  • PMID:38077370
    Abnormal activation of the interleukin (IL)-36-chemokine-neutrophil axis, dysregulation of innate immune responses, and ensuing excessive neutrophil infiltration are implicated in the pathogenesis of GPP

References

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Deep Research

Falcon

(IL36RN-deep-research-falcon.md)

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OpenAI

(IL36RN-deep-research-openai.md)

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Perplexity

(IL36RN-deep-research-perplexity-lite.md)

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Perplexity

(IL36RN-deep-research-perplexity.md)

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