TODO: Add description for ILF3
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0003725
double-stranded RNA binding
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0003727
single-stranded RNA binding
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0046718
symbiont entry into host cell
|
IEA
GO_REF:0000108 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0003677
DNA binding
|
IEA
GO_REF:0000043 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0003723
RNA binding
|
IEA
GO_REF:0000043 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0003725
double-stranded RNA binding
|
IEA
GO_REF:0000002 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005634
nucleus
|
IEA
GO_REF:0000120 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005730
nucleolus
|
IEA
GO_REF:0000044 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005737
cytoplasm
|
IEA
GO_REF:0000120 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0051607
defense response to virus
|
IEA
GO_REF:0000043 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005515
protein binding
|
IPI
PMID:10749851 Protein-arginine methyltransferase I, the predominant protei... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:10749851
Protein-arginine methyltransferase I, the predominant protein-arginine methyltransferase in cells, interacts with and is regulated by interleukin enhancer-binding factor 3.
|
|
GO:0005515
protein binding
|
IPI
PMID:18337511 NFAR-1 and -2 modulate translation and are required for effi... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:18337511
NFAR-1 and -2 modulate translation and are required for efficient host defense.
|
|
GO:0005515
protein binding
|
IPI
PMID:21987769 DRBP76 associates with Ebola virus VP35 and suppresses viral... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:21987769
DRBP76 associates with Ebola virus VP35 and suppresses viral polymerase function.
|
|
GO:0005515
protein binding
|
IPI
PMID:22810585 Viral immune modulators perturb the human molecular network ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:22810585
Viral immune modulators perturb the human molecular network by common and unique strategies.
|
|
GO:0005515
protein binding
|
IPI
PMID:23853584 The interactomes of influenza virus NS1 and NS2 proteins ide... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:23853584
Jul 4. The interactomes of influenza virus NS1 and NS2 proteins identify new host factors and provide insights for ADAR1 playing a supportive role in virus replication.
|
|
GO:0005515
protein binding
|
IPI
PMID:23976881 The HILDA complex coordinates a conditional switch in the 3'... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:23976881
Aug 20. The HILDA complex coordinates a conditional switch in the 3'-untranslated region of the VEGFA mRNA.
|
|
GO:0005515
protein binding
|
IPI
PMID:35271311 OpenCell: Endogenous tagging for the cartography of human ce... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:35271311
2022 Mar 11. OpenCell: Endogenous tagging for the cartography of human cellular organization.
|
|
GO:0005515
protein binding
|
IPI
PMID:39251607 Systematic identification of post-transcriptional regulatory... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:39251607
Systematic identification of post-transcriptional regulatory modules.
|
|
GO:0017148
negative regulation of translation
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0045071
negative regulation of viral genome replication
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
IDA
GO_REF:0000052 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005730
nucleolus
|
IDA
GO_REF:0000052 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005739
mitochondrion
|
IDA
GO_REF:0000052 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0160091
spliceosome-depend formation of circular RNA
|
IDA
PMID:28625552 Coordinated circRNA Biogenesis and Function with NF90/NF110 ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:28625552
Epub 2017 Jun 15. Coordinated circRNA Biogenesis and Function with NF90/NF110 in Viral Infection.
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-9834807 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-9836383 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-9760399 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-9760402 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-9760652 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0001618
virus receptor activity
|
IDA
PMID:21123651 Phosphorylation of the NFAR proteins by the dsRNA-dependent ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:21123651
Phosphorylation of the NFAR proteins by the dsRNA-dependent protein kinase PKR constitutes a novel mechanism of translational regulation and cellular defense.
|
|
GO:0035925
mRNA 3'-UTR AU-rich region binding
|
IDA
PMID:14731398 Facilitation of mRNA deadenylation and decay by the exosome-... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:14731398
Facilitation of mRNA deadenylation and decay by the exosome-bound, DExH protein RHAU.
|
|
GO:0005515
protein binding
|
IPI
PMID:14731398 Facilitation of mRNA deadenylation and decay by the exosome-... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:14731398
Facilitation of mRNA deadenylation and decay by the exosome-bound, DExH protein RHAU.
|
|
GO:0005576
extracellular region
|
HDA
PMID:27068509 Extracellular matrix remodelling in response to venous hyper... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:27068509
Apr 11. Extracellular matrix remodelling in response to venous hypertension: proteomics of human varicose veins.
|
|
GO:0005515
protein binding
|
IPI
PMID:24965446 Host factors that interact with the pestivirus N-terminal pr... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:24965446
Host factors that interact with the pestivirus N-terminal protease, Npro, are components of the ribonucleoprotein complex.
|
|
GO:0003725
double-stranded RNA binding
|
IDA
PMID:11777942 Exportin-5, a novel karyopherin, mediates nuclear export of ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:11777942
Jan 3. Exportin-5, a novel karyopherin, mediates nuclear export of double-stranded RNA binding proteins.
|
|
GO:0005515
protein binding
|
IPI
PMID:11777942 Exportin-5, a novel karyopherin, mediates nuclear export of ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:11777942
Jan 3. Exportin-5, a novel karyopherin, mediates nuclear export of double-stranded RNA binding proteins.
|
|
GO:0005634
nucleus
|
IDA
PMID:8885239 Identification of novel M phase phosphoproteins by expressio... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:8885239
Identification of novel M phase phosphoproteins by expression cloning.
|
|
GO:0016020
membrane
|
HDA
PMID:19946888 Defining the membrane proteome of NK cells. |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:19946888
Defining the membrane proteome of NK cells.
|
|
GO:0003723
RNA binding
|
HDA
PMID:22658674 Insights into RNA biology from an atlas of mammalian mRNA-bi... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:22658674
May 31. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins.
|
|
GO:0003723
RNA binding
|
HDA
PMID:22681889 The mRNA-bound proteome and its global occupancy profile on ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:22681889
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.
|
|
GO:0005634
nucleus
|
IDA
PMID:21123651 Phosphorylation of the NFAR proteins by the dsRNA-dependent ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:21123651
Phosphorylation of the NFAR proteins by the dsRNA-dependent protein kinase PKR constitutes a novel mechanism of translational regulation and cellular defense.
|
|
GO:0005737
cytoplasm
|
IDA
PMID:21123651 Phosphorylation of the NFAR proteins by the dsRNA-dependent ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:21123651
Phosphorylation of the NFAR proteins by the dsRNA-dependent protein kinase PKR constitutes a novel mechanism of translational regulation and cellular defense.
|
|
GO:0006468
protein phosphorylation
|
IDA
PMID:21123651 Phosphorylation of the NFAR proteins by the dsRNA-dependent ... |
REMOVE |
Summary: MISANNOTATION: ILF3 (also known as NFAR) is NOT a kinase. PMID:21123651 title explicitly states "Phosphorylation of the NFAR proteins BY the dsRNA-dependent protein kinase PKR" - ILF3/NFAR is the SUBSTRATE being phosphorylated by PKR at Thr-188 and Thr-315. UniProt also notes ILF3 is a "nuclear phosphoprotein" (M-phase phosphoprotein 4) and describes it being "phosphorylated by the interferon-induced protein kinase, PKR". ILF3 is a dsRNA-binding protein, not an enzyme that performs phosphorylation.
Supporting Evidence:
PMID:21123651
Phosphorylation of the NFAR proteins by the dsRNA-dependent protein kinase PKR constitutes a novel mechanism of translational regulation and cellular defense.
|
|
GO:0017148
negative regulation of translation
|
ISS
GO_REF:0000024 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0045071
negative regulation of viral genome replication
|
ISS
GO_REF:0000024 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005515
protein binding
|
IPI
PMID:17932509 Proteomic and functional analysis of Argonaute-containing mR... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:17932509
Proteomic and functional analysis of Argonaute-containing mRNA-protein complexes in human cells.
|
|
GO:0005634
nucleus
|
IDA
PMID:10749851 Protein-arginine methyltransferase I, the predominant protei... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:10749851
Protein-arginine methyltransferase I, the predominant protein-arginine methyltransferase in cells, interacts with and is regulated by interleukin enhancer-binding factor 3.
|
|
GO:1990904
ribonucleoprotein complex
|
IDA
PMID:17289661 Molecular composition of IMP1 ribonucleoprotein granules. |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:17289661
Epub 2007 Feb 7. Molecular composition of IMP1 ribonucleoprotein granules.
|
|
GO:0003677
DNA binding
|
IDA
PMID:10574923 Autoantibodies define a family of proteins with conserved do... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:10574923
Autoantibodies define a family of proteins with conserved double-stranded RNA-binding domains as well as DNA binding activity.
|
|
GO:0003677
DNA binding
|
IDA
PMID:7519613 Cloning and expression of cyclosporin A- and FK506-sensitive... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:7519613
Cloning and expression of cyclosporin A- and FK506-sensitive nuclear factor of activated T-cells: NF45 and NF90.
|
|
GO:0003725
double-stranded RNA binding
|
IDA
PMID:10574923 Autoantibodies define a family of proteins with conserved do... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:10574923
Autoantibodies define a family of proteins with conserved double-stranded RNA-binding domains as well as DNA binding activity.
|
|
GO:0005515
protein binding
|
IPI
PMID:10574923 Autoantibodies define a family of proteins with conserved do... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:10574923
Autoantibodies define a family of proteins with conserved double-stranded RNA-binding domains as well as DNA binding activity.
|
|
GO:0005515
protein binding
|
IPI
PMID:11739746 The RNA binding protein nuclear factor 90 functions as both ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:11739746
The RNA binding protein nuclear factor 90 functions as both a positive and negative regulator of gene expression in mammalian cells.
|
|
GO:0005515
protein binding
|
IPI
PMID:9442054 DNA-dependent protein kinase interacts with antigen receptor... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:9442054
DNA-dependent protein kinase interacts with antigen receptor response element binding proteins NF90 and NF45.
|
|
GO:0005634
nucleus
|
IDA
PMID:11739746 The RNA binding protein nuclear factor 90 functions as both ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:11739746
The RNA binding protein nuclear factor 90 functions as both a positive and negative regulator of gene expression in mammalian cells.
|
|
GO:0005634
nucleus
|
IDA
PMID:7519613 Cloning and expression of cyclosporin A- and FK506-sensitive... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:7519613
Cloning and expression of cyclosporin A- and FK506-sensitive nuclear factor of activated T-cells: NF45 and NF90.
|
|
GO:0045892
negative regulation of DNA-templated transcription
|
IDA
PMID:11739746 The RNA binding protein nuclear factor 90 functions as both ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:11739746
The RNA binding protein nuclear factor 90 functions as both a positive and negative regulator of gene expression in mammalian cells.
|
|
GO:0045893
positive regulation of DNA-templated transcription
|
IDA
PMID:11739746 The RNA binding protein nuclear factor 90 functions as both ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:11739746
The RNA binding protein nuclear factor 90 functions as both a positive and negative regulator of gene expression in mammalian cells.
|
|
GO:0003723
RNA binding
|
NAS
PMID:10400669 DRBP76, a double-stranded RNA-binding nuclear protein, is ph... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:10400669
DRBP76, a double-stranded RNA-binding nuclear protein, is phosphorylated by the interferon-induced protein kinase, PKR.
|
|
GO:0005634
nucleus
|
NAS
PMID:10400669 DRBP76, a double-stranded RNA-binding nuclear protein, is ph... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:10400669
DRBP76, a double-stranded RNA-binding nuclear protein, is phosphorylated by the interferon-induced protein kinase, PKR.
|
id: Q12906
gene_symbol: ILF3
product_type: PROTEIN
status: INITIALIZED
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: 'TODO: Add description for ILF3'
alternative_products:
- name: 1 (NFAR-2, ILF3-E)
id: Q12906-1
- name: 2 (NFAR-1, DRBP76)
id: Q12906-2
sequence_note: VSP_003888, VSP_003889
- name: '3'
id: Q12906-3
sequence_note: VSP_003890, VSP_003891
- name: 4 (DRBP76 Alpha, ILF3-A)
id: Q12906-4
sequence_note: VSP_003883, VSP_003884, VSP_003885
- name: 5 (DRBP76 Delta, Gamma, ILF3-C)
id: Q12906-5
sequence_note: VSP_003886, VSP_003887
- name: '6'
id: Q12906-6
sequence_note: VSP_003883, VSP_003888, VSP_003889
- name: '7'
id: Q12906-7
sequence_note: VSP_003883
existing_annotations:
- term:
id: GO:0003725
label: double-stranded RNA binding
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0003727
label: single-stranded RNA binding
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0046718
label: symbiont entry into host cell
evidence_type: IEA
original_reference_id: GO_REF:0000108
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0003677
label: DNA binding
evidence_type: IEA
original_reference_id: GO_REF:0000043
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0003723
label: RNA binding
evidence_type: IEA
original_reference_id: GO_REF:0000043
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0003725
label: double-stranded RNA binding
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005634
label: nucleus
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005730
label: nucleolus
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0051607
label: defense response to virus
evidence_type: IEA
original_reference_id: GO_REF:0000043
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:10749851
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:10749851
supporting_text: Protein-arginine methyltransferase I, the predominant
protein-arginine methyltransferase in cells, interacts with and is
regulated by interleukin enhancer-binding factor 3.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:18337511
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:18337511
supporting_text: NFAR-1 and -2 modulate translation and are required
for efficient host defense.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:21987769
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:21987769
supporting_text: DRBP76 associates with Ebola virus VP35 and
suppresses viral polymerase function.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:22810585
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:22810585
supporting_text: Viral immune modulators perturb the human molecular
network by common and unique strategies.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:23853584
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:23853584
supporting_text: Jul 4. The interactomes of influenza virus NS1 and
NS2 proteins identify new host factors and provide insights for
ADAR1 playing a supportive role in virus replication.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:23976881
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:23976881
supporting_text: Aug 20. The HILDA complex coordinates a conditional
switch in the 3'-untranslated region of the VEGFA mRNA.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:35271311
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:35271311
supporting_text: '2022 Mar 11. OpenCell: Endogenous tagging for the cartography
of human cellular organization.'
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:39251607
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:39251607
supporting_text: Systematic identification of post-transcriptional
regulatory modules.
- term:
id: GO:0017148
label: negative regulation of translation
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0045071
label: negative regulation of viral genome replication
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: IDA
original_reference_id: GO_REF:0000052
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005730
label: nucleolus
evidence_type: IDA
original_reference_id: GO_REF:0000052
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IDA
original_reference_id: GO_REF:0000052
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0160091
label: spliceosome-depend formation of circular RNA
evidence_type: IDA
original_reference_id: PMID:28625552
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:28625552
supporting_text: Epub 2017 Jun 15. Coordinated circRNA Biogenesis and
Function with NF90/NF110 in Viral Infection.
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9834807
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9836383
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9760399
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9760402
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9760652
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0001618
label: virus receptor activity
evidence_type: IDA
original_reference_id: PMID:21123651
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:21123651
supporting_text: Phosphorylation of the NFAR proteins by the
dsRNA-dependent protein kinase PKR constitutes a novel mechanism of
translational regulation and cellular defense.
- term:
id: GO:0035925
label: mRNA 3'-UTR AU-rich region binding
evidence_type: IDA
original_reference_id: PMID:14731398
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:14731398
supporting_text: Facilitation of mRNA deadenylation and decay by the
exosome-bound, DExH protein RHAU.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:14731398
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:14731398
supporting_text: Facilitation of mRNA deadenylation and decay by the
exosome-bound, DExH protein RHAU.
- term:
id: GO:0005576
label: extracellular region
evidence_type: HDA
original_reference_id: PMID:27068509
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:27068509
supporting_text: 'Apr 11. Extracellular matrix remodelling in response to
venous hypertension: proteomics of human varicose veins.'
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:24965446
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:24965446
supporting_text: Host factors that interact with the pestivirus
N-terminal protease, Npro, are components of the ribonucleoprotein
complex.
- term:
id: GO:0003725
label: double-stranded RNA binding
evidence_type: IDA
original_reference_id: PMID:11777942
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:11777942
supporting_text: Jan 3. Exportin-5, a novel karyopherin, mediates
nuclear export of double-stranded RNA binding proteins.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:11777942
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:11777942
supporting_text: Jan 3. Exportin-5, a novel karyopherin, mediates
nuclear export of double-stranded RNA binding proteins.
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:8885239
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:8885239
supporting_text: Identification of novel M phase phosphoproteins by
expression cloning.
- term:
id: GO:0016020
label: membrane
evidence_type: HDA
original_reference_id: PMID:19946888
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:19946888
supporting_text: Defining the membrane proteome of NK cells.
- term:
id: GO:0003723
label: RNA binding
evidence_type: HDA
original_reference_id: PMID:22658674
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:22658674
supporting_text: May 31. Insights into RNA biology from an atlas of
mammalian mRNA-binding proteins.
- term:
id: GO:0003723
label: RNA binding
evidence_type: HDA
original_reference_id: PMID:22681889
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:22681889
supporting_text: The mRNA-bound proteome and its global occupancy
profile on protein-coding transcripts.
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:21123651
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:21123651
supporting_text: Phosphorylation of the NFAR proteins by the
dsRNA-dependent protein kinase PKR constitutes a novel mechanism of
translational regulation and cellular defense.
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:21123651
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:21123651
supporting_text: Phosphorylation of the NFAR proteins by the
dsRNA-dependent protein kinase PKR constitutes a novel mechanism of
translational regulation and cellular defense.
- term:
id: GO:0006468
label: protein phosphorylation
evidence_type: IDA
original_reference_id: PMID:21123651
review:
summary: >-
MISANNOTATION: ILF3 (also known as NFAR) is NOT a kinase. PMID:21123651 title
explicitly states "Phosphorylation of the NFAR proteins BY the dsRNA-dependent
protein kinase PKR" - ILF3/NFAR is the SUBSTRATE being phosphorylated by PKR
at Thr-188 and Thr-315. UniProt also notes ILF3 is a "nuclear phosphoprotein"
(M-phase phosphoprotein 4) and describes it being "phosphorylated by the
interferon-induced protein kinase, PKR". ILF3 is a dsRNA-binding protein,
not an enzyme that performs phosphorylation.
action: REMOVE
supported_by:
- reference_id: PMID:21123651
supporting_text: Phosphorylation of the NFAR proteins by the
dsRNA-dependent protein kinase PKR constitutes a novel mechanism of
translational regulation and cellular defense.
- term:
id: GO:0017148
label: negative regulation of translation
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0045071
label: negative regulation of viral genome replication
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:17932509
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:17932509
supporting_text: Proteomic and functional analysis of
Argonaute-containing mRNA-protein complexes in human cells.
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:10749851
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:10749851
supporting_text: Protein-arginine methyltransferase I, the predominant
protein-arginine methyltransferase in cells, interacts with and is
regulated by interleukin enhancer-binding factor 3.
- term:
id: GO:1990904
label: ribonucleoprotein complex
evidence_type: IDA
original_reference_id: PMID:17289661
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:17289661
supporting_text: Epub 2007 Feb 7. Molecular composition of IMP1
ribonucleoprotein granules.
- term:
id: GO:0003677
label: DNA binding
evidence_type: IDA
original_reference_id: PMID:10574923
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:10574923
supporting_text: Autoantibodies define a family of proteins with
conserved double-stranded RNA-binding domains as well as DNA binding
activity.
- term:
id: GO:0003677
label: DNA binding
evidence_type: IDA
original_reference_id: PMID:7519613
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:7519613
supporting_text: 'Cloning and expression of cyclosporin A- and FK506-sensitive
nuclear factor of activated T-cells: NF45 and NF90.'
- term:
id: GO:0003725
label: double-stranded RNA binding
evidence_type: IDA
original_reference_id: PMID:10574923
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:10574923
supporting_text: Autoantibodies define a family of proteins with
conserved double-stranded RNA-binding domains as well as DNA binding
activity.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:10574923
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:10574923
supporting_text: Autoantibodies define a family of proteins with
conserved double-stranded RNA-binding domains as well as DNA binding
activity.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:11739746
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:11739746
supporting_text: The RNA binding protein nuclear factor 90 functions
as both a positive and negative regulator of gene expression in
mammalian cells.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:9442054
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:9442054
supporting_text: DNA-dependent protein kinase interacts with antigen
receptor response element binding proteins NF90 and NF45.
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:11739746
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:11739746
supporting_text: The RNA binding protein nuclear factor 90 functions
as both a positive and negative regulator of gene expression in
mammalian cells.
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:7519613
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:7519613
supporting_text: 'Cloning and expression of cyclosporin A- and FK506-sensitive
nuclear factor of activated T-cells: NF45 and NF90.'
- term:
id: GO:0045892
label: negative regulation of DNA-templated transcription
evidence_type: IDA
original_reference_id: PMID:11739746
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:11739746
supporting_text: The RNA binding protein nuclear factor 90 functions
as both a positive and negative regulator of gene expression in
mammalian cells.
- term:
id: GO:0045893
label: positive regulation of DNA-templated transcription
evidence_type: IDA
original_reference_id: PMID:11739746
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:11739746
supporting_text: The RNA binding protein nuclear factor 90 functions
as both a positive and negative regulator of gene expression in
mammalian cells.
- term:
id: GO:0003723
label: RNA binding
evidence_type: NAS
original_reference_id: PMID:10400669
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:10400669
supporting_text: DRBP76, a double-stranded RNA-binding nuclear
protein, is phosphorylated by the interferon-induced protein kinase,
PKR.
- term:
id: GO:0005634
label: nucleus
evidence_type: NAS
original_reference_id: PMID:10400669
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:10400669
supporting_text: DRBP76, a double-stranded RNA-binding nuclear
protein, is phosphorylated by the interferon-induced protein kinase,
PKR.
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with
GO terms
findings: []
- id: GO_REF:0000024
title: Manual transfer of experimentally-verified manual GO annotation data
to orthologs by curator judgment of sequence similarity
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000043
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword
mapping
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular
Location vocabulary mapping, accompanied by conservative changes to GO
terms applied by UniProt
findings: []
- id: GO_REF:0000052
title: Gene Ontology annotation based on curation of immunofluorescence data
findings: []
- id: GO_REF:0000107
title: Automatic transfer of experimentally verified manual GO annotation
data to orthologs using Ensembl Compara
findings: []
- id: GO_REF:0000108
title: Automatic assignment of GO terms using logical inference, based on on
inter-ontology links
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:10400669
title: DRBP76, a double-stranded RNA-binding nuclear protein, is
phosphorylated by the interferon-induced protein kinase, PKR.
findings: []
- id: PMID:10574923
title: Autoantibodies define a family of proteins with conserved
double-stranded RNA-binding domains as well as DNA binding activity.
findings: []
- id: PMID:10749851
title: Protein-arginine methyltransferase I, the predominant
protein-arginine methyltransferase in cells, interacts with and is
regulated by interleukin enhancer-binding factor 3.
findings: []
- id: PMID:11739746
title: The RNA binding protein nuclear factor 90 functions as both a
positive and negative regulator of gene expression in mammalian cells.
findings: []
- id: PMID:11777942
title: Exportin-5, a novel karyopherin, mediates nuclear export of
double-stranded RNA binding proteins.
findings: []
- id: PMID:14731398
title: Facilitation of mRNA deadenylation and decay by the exosome-bound,
DExH protein RHAU.
findings: []
- id: PMID:17289661
title: Molecular composition of IMP1 ribonucleoprotein granules.
findings: []
- id: PMID:17932509
title: Proteomic and functional analysis of Argonaute-containing
mRNA-protein complexes in human cells.
findings: []
- id: PMID:18337511
title: NFAR-1 and -2 modulate translation and are required for efficient
host defense.
findings: []
- id: PMID:19946888
title: Defining the membrane proteome of NK cells.
findings: []
- id: PMID:21123651
title: Phosphorylation of the NFAR proteins by the dsRNA-dependent protein
kinase PKR constitutes a novel mechanism of translational regulation and
cellular defense.
findings: []
- id: PMID:21987769
title: DRBP76 associates with Ebola virus VP35 and suppresses viral
polymerase function.
findings: []
- id: PMID:22658674
title: Insights into RNA biology from an atlas of mammalian mRNA-binding
proteins.
findings: []
- id: PMID:22681889
title: The mRNA-bound proteome and its global occupancy profile on
protein-coding transcripts.
findings: []
- id: PMID:22810585
title: Viral immune modulators perturb the human molecular network by common
and unique strategies.
findings: []
- id: PMID:23853584
title: The interactomes of influenza virus NS1 and NS2 proteins identify new
host factors and provide insights for ADAR1 playing a supportive role in
virus replication.
findings: []
- id: PMID:23976881
title: The HILDA complex coordinates a conditional switch in the
3'-untranslated region of the VEGFA mRNA.
findings: []
- id: PMID:24965446
title: Host factors that interact with the pestivirus N-terminal protease,
Npro, are components of the ribonucleoprotein complex.
findings: []
- id: PMID:27068509
title: 'Extracellular matrix remodelling in response to venous hypertension: proteomics
of human varicose veins.'
findings: []
- id: PMID:28625552
title: Coordinated circRNA Biogenesis and Function with NF90/NF110 in Viral
Infection.
findings: []
- id: PMID:35271311
title: 'OpenCell: Endogenous tagging for the cartography of human cellular organization.'
findings: []
- id: PMID:39251607
title: Systematic identification of post-transcriptional regulatory modules.
findings: []
- id: PMID:7519613
title: 'Cloning and expression of cyclosporin A- and FK506-sensitive nuclear factor
of activated T-cells: NF45 and NF90.'
findings: []
- id: PMID:8885239
title: Identification of novel M phase phosphoproteins by expression
cloning.
findings: []
- id: PMID:9442054
title: DNA-dependent protein kinase interacts with antigen receptor response
element binding proteins NF90 and NF45.
findings: []
- id: Reactome:R-HSA-9760399
title: ILF3 and HOXC8 bind CDH11 gene promoter
findings: []
- id: Reactome:R-HSA-9760402
title: ILF3 binds HOXC8
findings: []
- id: Reactome:R-HSA-9760652
title: ILF3 binds CDH11 gene promoter
findings: []
- id: Reactome:R-HSA-9834807
title: ILF3 binds PKR
findings: []
- id: Reactome:R-HSA-9836383
title: p-PKR dimer phosphorylates ILF3:ILF2
findings: []