MMADHC (cobalamin trafficking protein CblD; the cblD complementation group) is a cobalamin (vitamin B12)-trafficking branch-point/adaptor protein. It acts downstream of MMACHC (cblC) in the cytosol, where it physically associates with MMACHC and, together with methionine synthase (MTR) and methionine synthase reductase (MTRR), directs the common cob(II)alamin intermediate into one of two coenzyme-synthesis branches: the mitochondrial adenosylcobalamin (AdoCbl) branch that supplies methylmalonyl-CoA mutase (MMUT), or the cytosolic methylcobalamin (MeCbl) branch that supplies methionine synthase (MTR). MMADHC is not an enzyme; its C-terminal domain adopts a nitro-FMN-reductase-like fold and provides a cysteine (Cys261) thiolate ligand to cob(II)alamin bound to MMACHC. The protein has both cytosolic and mitochondrial pools and carries a predicted N-terminal mitochondrial transit peptide. Distinct mutation positions determine which branch fails, producing three biochemical phenotypes: isolated methylmalonic aciduria (cblD-variant 2), isolated homocystinuria (cblD-variant 1), or combined methylmalonic aciduria and homocystinuria.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0005739
mitochondrion
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Phylogenetically inferred mitochondrial localization. MMADHC has a predicted N-terminal mitochondrial transit peptide and a documented mitochondrial pool in addition to its cytosolic pool, consistent with its role in routing cobalamin toward the mitochondrial AdoCbl branch.
Reason: Mitochondrial localization is supported experimentally (IDA/HTP) and by the UniProt transit peptide annotation, so the IBA localization is biologically correct. However, the functionally decisive branch-point/adaptor activity occurs in the cytosol (downstream of MMACHC, in complex with MMACHC/MTR/MTRR); the mitochondrial pool is a secondary compartment, hence retained as non-core.
Supporting Evidence:
PMID:23270877
MMADHC is both mitochondrial and cytoplasmic
file:human/MMADHC/MMADHC-uniprot.txt
Cytoplasm {ECO:0000269|PubMed:23270877}.
|
|
GO:0009235
cobalamin metabolic process
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phylogenetically inferred involvement in cobalamin metabolism. This is the central, well-supported biological process for MMADHC: it acts as a branch point directing cobalamin into the AdoCbl (mitochondrial) and MeCbl (cytosolic) coenzyme pathways.
Reason: Strongly corroborated by multiple experimental studies establishing MMADHC as a cobalamin-trafficking branch-point protein downstream of MMACHC. Represents a core biological process for this gene.
Supporting Evidence:
PMID:22156578
supporting the role of cblD protein as a branch point in
PMID:23270877
MMADHC acts as a branch point for vitamin B(12) delivery to
|
|
GO:0140104
molecular carrier activity
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phylogenetically inferred molecular carrier activity. MMADHC is a non-enzymatic cobalamin-trafficking adaptor that receives/hands off the cobalamin cofactor (partitioning it between the MeCbl and AdoCbl branches) rather than catalyzing a chemical reaction. Molecular carrier activity captures this carrier/adaptor role.
Reason: Consistent with the multiple independent IDA/EXP/TAS annotations to the same term and with the biochemical evidence that MMADHC functions as an adaptor controlling intracellular cobalamin partitioning rather than as an enzyme. This is the best available molecular-function term for a non-catalytic cofactor-trafficking protein.
Supporting Evidence:
PMID:23415655
an adapter function for CblD
PMID:22156578
supporting the role of cblD protein as a branch point in
|
|
GO:0005737
cytoplasm
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: Electronic (UniProt SubCell mapping) annotation to cytoplasm. Consistent with the documented cytoplasmic pool of MMADHC, where its branch-point/adaptor activity occurs.
Reason: Correct but general; the more specific experimentally supported cytosol term (GO:0005829) is also annotated. Accept as a valid, if broad, localization.
Supporting Evidence:
file:human/MMADHC/MMADHC-uniprot.txt
Cytoplasm {ECO:0000269|PubMed:23270877}.
|
|
GO:0005739
mitochondrion
|
IEA
GO_REF:0000044 |
KEEP AS NON CORE |
Summary: Electronic (UniProt SubCell mapping) annotation to mitochondrion, matching the predicted N-terminal mitochondrial transit peptide and the experimentally observed mitochondrial pool.
Reason: Mitochondrial localization is real and supported (transit peptide; IDA; HTP), but secondary to the cytosolic branch-point activity, so kept as non-core.
Supporting Evidence:
PMID:23270877
MMADHC is both mitochondrial and cytoplasmic
|
|
GO:0009235
cobalamin metabolic process
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: InterPro2GO electronic annotation (IPR019362, the MMADHC family) to cobalamin metabolic process. The InterPro family is specific to this cobalamin-trafficking protein, so the mapping is accurate.
Reason: Correct biological process, redundant with the well-supported IBA/IDA annotations to the same term. Represents a core process.
Supporting Evidence:
PMID:22156578
supporting the role of cblD protein as a branch point in
|
|
GO:0005515
protein binding
|
IPI
PMID:32296183 A reference map of the human binary protein interactome. |
MARK AS OVER ANNOTATED |
Summary: Bare protein binding from a large-scale binary interactome map (HuRI), with high-throughput yeast two-hybrid interactors (CREB5, POU4F2, TBC1D7, CINP) that are not part of the established cobalamin-trafficking machinery and are of unclear biological relevance to MMADHC function.
Reason: Per curation guidance, bare "protein binding" is uninformative and this comes from a genome-scale two-hybrid screen whose hits are not the biologically meaningful partners (MMACHC, MTR, MTRR). Not removed (experimental IPI), but marked as over-annotated; the informative partners are captured by the molecular carrier activity and cobalamin metabolic process terms.
Supporting Evidence:
PMID:32296183
we present a human 'all-by-all' reference interactome map of human binary protein interactions, or 'HuRI'.
|
|
GO:0009235
cobalamin metabolic process
|
TAS
Reactome:R-HSA-9759218 |
ACCEPT |
Summary: Reactome pathway annotation (Cobalamin metabolism) placing MMADHC in cobalamin metabolic process. Consistent with all other evidence for this gene.
Reason: Traceable author statement from Reactome for a core biological process; concordant with the IBA/IDA/IEA annotations to the same term.
Supporting Evidence:
PMID:23270877
MMADHC acts as a branch point for vitamin B(12) delivery to
|
|
GO:0005739
mitochondrion
|
HTP
PMID:34800366 Quantitative high-confidence human mitochondrial proteome an... |
KEEP AS NON CORE |
Summary: High-throughput detection of MMADHC in a high-confidence human mitochondrial proteome, corroborating the mitochondrial pool identified by immunofluorescence/fractionation and the predicted mitochondrial transit peptide.
Reason: Confirms mitochondrial localization but this compartment is secondary to the cytosolic branch-point activity; kept as non-core localization.
Supporting Evidence:
PMID:34800366
high-confidence human mitochondrial proteome
PMID:23270877
MMADHC is both mitochondrial and cytoplasmic
|
|
GO:0140104
molecular carrier activity
|
TAS
Reactome:R-HSA-3149563 |
ACCEPT |
Summary: Reactome TAS annotation (MMADHC targets transport of cytosolic cob(II)alamin to mitochondria) to molecular carrier activity, capturing MMADHC's cobalamin carrier/routing role.
Reason: Consistent with the branch-point/adaptor function; molecular carrier activity is the appropriate non-enzymatic MF term. Redundant with the IBA/IDA/EXP annotations to the same term.
Supporting Evidence:
PMID:23415655
an adapter function for CblD
|
|
GO:0140104
molecular carrier activity
|
EXP
PMID:21071249 Interaction between MMACHC and MMADHC, two human proteins pa... |
ACCEPT |
Summary: Experimental support (via Reactome) for cobalamin carrier/adaptor activity, based on the demonstrated direct interaction of MMADHC with MMACHC, the partner that hands off the cobalamin cofactor.
Reason: The MMACHC-MMADHC interaction underpins MMADHC's role as a downstream cobalamin carrier/adaptor; molecular carrier activity is the correct MF term.
Supporting Evidence:
PMID:21071249
MMADHC was confirmed as a binding
|
|
GO:0005829
cytosol
|
IDA
PMID:23270877 Subcellular location of MMACHC and MMADHC, two human protein... |
ACCEPT |
Summary: Direct experimental (immunofluorescence and subcellular fractionation) localization of MMADHC to the cytosol, the compartment where it acts downstream of MMACHC as a cobalamin branch point.
Reason: Well-supported specific cytosolic localization; this is the primary site of MMADHC's branch-point/adaptor activity and is retained as a core location.
Supporting Evidence:
PMID:23270877
MMADHC is both mitochondrial and cytoplasmic
|
|
GO:0009235
cobalamin metabolic process
|
IDA
PMID:22156578 Molecular mechanisms leading to three different phenotypes i... |
ACCEPT |
Summary: Direct experimental evidence (complementation of cblD patient fibroblasts; mutation position correlating with biochemical phenotype) that MMADHC acts within cobalamin metabolism as a branch point balancing cytosolic MeCbl and mitochondrial AdoCbl synthesis.
Reason: Core biological process, directly demonstrated. The acts_upstream_of_or_within qualifier reflects the regulatory branch-point role.
Supporting Evidence:
PMID:22156578
supporting the role of cblD protein as a branch point in
PMID:22156578
correlate with the biochemical phenotype
|
|
GO:0140104
molecular carrier activity
|
IDA
PMID:22156578 Molecular mechanisms leading to three different phenotypes i... |
ACCEPT |
Summary: Direct experimental support for MMADHC's cobalamin carrier/branch-point activity: a single protein with two functional domains that partition cobalamin between the cytosolic MeCbl and mitochondrial AdoCbl routes.
Reason: Molecular carrier activity is the appropriate non-enzymatic MF term for this cofactor-partitioning adaptor; directly supported by the phenotype/rescue data.
Supporting Evidence:
PMID:22156578
supporting the role of cblD protein as a branch point in
|
|
GO:0140104
molecular carrier activity
|
IDA
PMID:32871076 An Interprotein Co-S Coordination Complex in the B(12)-Traff... |
ACCEPT |
Summary: Direct experimental evidence that CblD/MMADHC provides a Cys261 thiolate ligand to cob(II)alamin bound to CblC/MMACHC, forming an interprotein Co-S coordination complex used for cofactor translocation in the trafficking pathway - a molecular carrier/handoff activity.
Reason: Biochemical/structural demonstration of direct cobalamin coordination by MMADHC in the trafficking pathway strongly supports molecular carrier activity as its MF.
Supporting Evidence:
PMID:32871076
CblD provides a sulfur ligand to cob(II)alamin bound to CblC
PMID:32871076
Cys-261 on CblD as the sulfur donor
|
|
GO:0005829
cytosol
|
IDA
PMID:23270877 Subcellular location of MMACHC and MMADHC, two human protein... |
ACCEPT |
Summary: Direct experimental evidence that MMADHC is active in the cytosol, where it functions downstream of MMACHC as the cobalamin branch point (and in complex with MMACHC, MTR and MTRR).
Reason: Cytosol is the primary site of MMADHC's branch-point/adaptor activity; the is_active_in qualifier is appropriate and this is a core location for the molecular function.
Supporting Evidence:
PMID:23270877
MMADHC is both mitochondrial and cytoplasmic
|
|
GO:0009235
cobalamin metabolic process
|
IDA
PMID:22156578 Molecular mechanisms leading to three different phenotypes i... |
ACCEPT |
Summary: Direct experimental involvement in cobalamin metabolic process (branch-point control of MeCbl/AdoCbl synthesis), demonstrated by expression/complementation of cblD patient fibroblasts.
Reason: Core biological process, directly supported; duplicates the acts_upstream_of_or_within annotation from the same paper with an involved_in qualifier, both valid.
Supporting Evidence:
PMID:22156578
supporting the role of cblD protein as a branch point in
|
|
GO:0005515
protein binding
|
IPI
PMID:27771510 Methionine synthase and methionine synthase reductase intera... |
MARK AS OVER ANNOTATED |
Summary: Protein binding annotation from co-IP/proximity-ligation demonstrating MMADHC interactions with methionine synthase (MTR/Q99707), methionine synthase reductase (MTRR/Q9UBK8) and MMACHC (Q9Y4U1) as part of a cytosolic multiprotein cobalamin-handling complex. These are biologically meaningful partners, but the term itself is uninformative.
Reason: Bare "protein binding" does not convey function; the meaningful interactions (MMACHC/MTR/MTRR) reflect the cytosolic cobalamin-carrier complex and are captured by the molecular carrier activity MF and cobalamin metabolic process BP terms. Experimental IPI, so not removed, but marked over-annotated.
Supporting Evidence:
PMID:27771510
processing of Cbl in cytoplasm occurs in a multiprotein complex composed of at least MS, MSR, MMACHC and MMADHC
|
|
GO:0005515
protein binding
|
IPI
PMID:23415655 The C-terminal domain of CblD interacts with CblC and influe... |
MARK AS OVER ANNOTATED |
Summary: Protein binding annotation for the MMADHC (CblD)-MMACHC (CblC, Q9Y4U1) interaction, shown biochemically to isolate a CblC-CblD complex that partitions cobalamin between the AdoCbl and MeCbl assimilation pathways.
Reason: The MMACHC interaction is central to MMADHC biology, but "protein binding" is uninformative; the functional consequence (adaptor/branch-point cobalamin carrier) is captured by molecular carrier activity and cobalamin metabolic process. Experimental IPI, not removed.
Supporting Evidence:
PMID:23415655
an adapter function for CblD
PMID:23415655
functions downstream of CblC in the cofactor assimilation pathway
|
|
GO:0005737
cytoplasm
|
IDA
PMID:23270877 Subcellular location of MMACHC and MMADHC, two human protein... |
ACCEPT |
Summary: Direct experimental cytoplasmic localization of MMADHC (immunofluorescence/subcellular fractionation), consistent with its cytosolic branch-point activity.
Reason: Correct but more general than the concurrently annotated cytosol (GO:0005829) term. Accept as valid localization.
Supporting Evidence:
PMID:23270877
MMADHC is both mitochondrial and cytoplasmic
|
|
GO:0005739
mitochondrion
|
IDA
PMID:23270877 Subcellular location of MMACHC and MMADHC, two human protein... |
KEEP AS NON CORE |
Summary: Direct experimental evidence that MMADHC has a mitochondrial pool in addition to its cytoplasmic pool, consistent with its role in routing cobalamin toward the mitochondrial AdoCbl branch and with its predicted mitochondrial transit peptide.
Reason: Genuine mitochondrial localization, but the decisive branch-point/adaptor activity is cytosolic; retained as non-core.
Supporting Evidence:
PMID:23270877
MMADHC is both mitochondrial and cytoplasmic
|
|
GO:0009235
cobalamin metabolic process
|
IDA
PMID:24722857 Characterization of functional domains of the cblD (MMADHC) ... |
ACCEPT |
Summary: Direct experimental involvement in cobalamin metabolism, from domain-mapping/rescue experiments showing that specific MMADHC regions differentially regulate AdoCbl and MeCbl synthesis (mapping to the three cblD phenotypes).
Reason: Core biological process, directly demonstrated by functional-domain characterization.
Supporting Evidence:
PMID:24722857
specific regions of MMADHC are
PMID:24722857
must be converted into two coenzyme
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-3318571 |
ACCEPT |
Summary: Reactome TAS annotation localizing MMADHC to the cytosol, consistent with the experimental cytosolic localization and its cytosolic branch-point function.
Reason: Concordant with the IDA cytosol annotation; retained as a core location.
Supporting Evidence:
PMID:23270877
MMADHC is both mitochondrial and cytoplasmic
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-3149494 |
ACCEPT |
Summary: Reactome TAS annotation (MMACHC:cob(II)alamin binds MMADHC) localizing MMADHC to the cytosol, the compartment where it receives cobalamin from MMACHC.
Reason: Concordant with experimental cytosol localization; retained as a core location.
Supporting Evidence:
PMID:23270877
MMADHC is both mitochondrial and cytoplasmic
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-3149563 |
ACCEPT |
Summary: Reactome TAS annotation localizing MMADHC to the cytosol, matching the experimental cytosolic localization and function.
Reason: Concordant with the IDA cytosol annotation; retained as a core location.
Supporting Evidence:
PMID:23270877
MMADHC is both mitochondrial and cytoplasmic
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-3204318 |
ACCEPT |
Summary: Reactome TAS annotation (cob(II)alamin transferred from MMACHC:MMADHC:cob(II)alamin to MTRR:MTR) localizing MMADHC to the cytosol, consistent with its cytosolic cobalamin-handoff role within the MMACHC/MTR/MTRR complex.
Reason: Concordant with experimental cytosol localization; retained as a core location.
Supporting Evidence:
PMID:23270877
MMADHC is both mitochondrial and cytoplasmic
PMID:27771510
processing of Cbl in cytoplasm occurs in a multiprotein complex composed of at least MS, MSR, MMACHC and MMADHC
|
Q: What molecular signals determine the partitioning of MMADHC between its cytosolic and mitochondrial pools, and does mitochondrial import of MMADHC itself carry cobalamin?
Q: Is the Cys261-mediated interprotein Co-S coordination with MMACHC-bound cob(II)alamin the general mechanism of cobalamin handoff, or only one of several transfer modes?
Experiment: Structure/cryo-EM of the full cytosolic MMACHC-MMADHC-MTR-MTRR complex with bound cobalamin to define the cofactor-handoff geometry and the basis of MeCbl-versus-AdoCbl branch selection.
Experiment: Quantitative flux measurements of MeCbl versus AdoCbl synthesis in cells expressing domain-swapped or transit-peptide-modified MMADHC variants to test how localization and domain boundaries set the branch point.
UniProt: Q9H3L0 (MMAD_HUMAN). Gene MMADHC (a.k.a. C2orf25, cblD). 296 aa, MW ~32.9 kDa.
Predicted N-terminal mitochondrial transit peptide (1..38, ECO:0000255); mature chain 39..296.
Structure solved for C-terminal domain (residues 108-296; PDB 5CUZ/5CV0/6X8Z) — a nitro-FMN
reductase-like fold [PMID:26364851, not cached: "molecular mimicry ... new subfamily of nitro-FMN reductases"].
MMADHC is the cblD-complementation-group protein and acts as a branch-point / adaptor in
intracellular cobalamin (vitamin B12) trafficking, functioning downstream of MMACHC (cblC)
in the cytosol. It is NOT an enzyme (the "-DHC" refers to the disease methylmalonic aciduria and
homocystinuria, not a dehydrogenase).
GOA carries GO:0140104 molecular carrier activity (IBA + multiple IDA/EXP/TAS from Reactome & primary
papers) as the F-aspect term — this is the "carries/hands-off cobalamin" adaptor activity, NOT an enzyme
activity. There is no catalytic/EC term in GOA and none should be invented. Retain molecular carrier activity
as the MF for core_functions.
The IPI "protein binding" (GO:0005515) annotations (PMID:32296183 HuRI high-throughput Y2H hits: CINP,
CREB5, POU4F2, TBC1D7; PMID:27771510 MTR/MTRR/MMACHC; PMID:23415655 MMACHC) are uninformative bare
protein-binding — mark as over-annotated per curation policy (do NOT REMOVE experimental IPIs), noting the
biologically meaningful partners (MMACHC, MTR, MTRR) are captured by the molecular carrier activity + BP terms.
Add file:human/MMADHC/MMADHC-uniprot.txt to references for the UniProt FUNCTION/SUBCELLULAR quote support.
id: Q9H3L0
gene_symbol: MMADHC
product_type: PROTEIN
status: INITIALIZED
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: >-
MMADHC (cobalamin trafficking protein CblD; the cblD complementation group) is a
cobalamin (vitamin B12)-trafficking branch-point/adaptor protein. It acts downstream of
MMACHC (cblC) in the cytosol, where it physically associates with MMACHC and, together
with methionine synthase (MTR) and methionine synthase reductase (MTRR), directs the
common cob(II)alamin intermediate into one of two coenzyme-synthesis branches: the
mitochondrial adenosylcobalamin (AdoCbl) branch that supplies methylmalonyl-CoA mutase
(MMUT), or the cytosolic methylcobalamin (MeCbl) branch that supplies methionine synthase
(MTR). MMADHC is not an enzyme; its C-terminal domain adopts a nitro-FMN-reductase-like
fold and provides a cysteine (Cys261) thiolate ligand to cob(II)alamin bound to MMACHC.
The protein has both cytosolic and mitochondrial pools and carries a predicted N-terminal
mitochondrial transit peptide. Distinct mutation positions determine which branch fails,
producing three biochemical phenotypes: isolated methylmalonic aciduria (cblD-variant 2),
isolated homocystinuria (cblD-variant 1), or combined methylmalonic aciduria and
homocystinuria.
existing_annotations:
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: >-
Phylogenetically inferred mitochondrial localization. MMADHC has a predicted
N-terminal mitochondrial transit peptide and a documented mitochondrial pool in
addition to its cytosolic pool, consistent with its role in routing cobalamin
toward the mitochondrial AdoCbl branch.
action: KEEP_AS_NON_CORE
reason: >-
Mitochondrial localization is supported experimentally (IDA/HTP) and by the UniProt
transit peptide annotation, so the IBA localization is biologically correct. However,
the functionally decisive branch-point/adaptor activity occurs in the cytosol
(downstream of MMACHC, in complex with MMACHC/MTR/MTRR); the mitochondrial pool is a
secondary compartment, hence retained as non-core.
supported_by:
- reference_id: PMID:23270877
supporting_text: MMADHC is both mitochondrial and cytoplasmic
- reference_id: file:human/MMADHC/MMADHC-uniprot.txt
supporting_text: Cytoplasm {ECO:0000269|PubMed:23270877}.
- term:
id: GO:0009235
label: cobalamin metabolic process
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: >-
Phylogenetically inferred involvement in cobalamin metabolism. This is the central,
well-supported biological process for MMADHC: it acts as a branch point directing
cobalamin into the AdoCbl (mitochondrial) and MeCbl (cytosolic) coenzyme pathways.
action: ACCEPT
reason: >-
Strongly corroborated by multiple experimental studies establishing MMADHC as a
cobalamin-trafficking branch-point protein downstream of MMACHC. Represents a core
biological process for this gene.
supported_by:
- reference_id: PMID:22156578
supporting_text: supporting the role of cblD protein as a branch point in
- reference_id: PMID:23270877
supporting_text: MMADHC acts as a branch point for vitamin B(12) delivery to
- term:
id: GO:0140104
label: molecular carrier activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: >-
Phylogenetically inferred molecular carrier activity. MMADHC is a non-enzymatic
cobalamin-trafficking adaptor that receives/hands off the cobalamin cofactor
(partitioning it between the MeCbl and AdoCbl branches) rather than catalyzing a
chemical reaction. Molecular carrier activity captures this carrier/adaptor role.
action: ACCEPT
reason: >-
Consistent with the multiple independent IDA/EXP/TAS annotations to the same term and
with the biochemical evidence that MMADHC functions as an adaptor controlling
intracellular cobalamin partitioning rather than as an enzyme. This is the best
available molecular-function term for a non-catalytic cofactor-trafficking protein.
supported_by:
- reference_id: PMID:23415655
supporting_text: an adapter function for CblD
- reference_id: PMID:22156578
supporting_text: supporting the role of cblD protein as a branch point in
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: >-
Electronic (UniProt SubCell mapping) annotation to cytoplasm. Consistent with the
documented cytoplasmic pool of MMADHC, where its branch-point/adaptor activity occurs.
action: ACCEPT
reason: >-
Correct but general; the more specific experimentally supported cytosol term
(GO:0005829) is also annotated. Accept as a valid, if broad, localization.
supported_by:
- reference_id: file:human/MMADHC/MMADHC-uniprot.txt
supporting_text: Cytoplasm {ECO:0000269|PubMed:23270877}.
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: >-
Electronic (UniProt SubCell mapping) annotation to mitochondrion, matching the
predicted N-terminal mitochondrial transit peptide and the experimentally observed
mitochondrial pool.
action: KEEP_AS_NON_CORE
reason: >-
Mitochondrial localization is real and supported (transit peptide; IDA; HTP), but
secondary to the cytosolic branch-point activity, so kept as non-core.
supported_by:
- reference_id: PMID:23270877
supporting_text: MMADHC is both mitochondrial and cytoplasmic
- term:
id: GO:0009235
label: cobalamin metabolic process
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: involved_in
review:
summary: >-
InterPro2GO electronic annotation (IPR019362, the MMADHC family) to cobalamin
metabolic process. The InterPro family is specific to this cobalamin-trafficking
protein, so the mapping is accurate.
action: ACCEPT
reason: >-
Correct biological process, redundant with the well-supported IBA/IDA annotations to
the same term. Represents a core process.
supported_by:
- reference_id: PMID:22156578
supporting_text: supporting the role of cblD protein as a branch point in
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:32296183
qualifier: enables
review:
summary: >-
Bare protein binding from a large-scale binary interactome map (HuRI), with
high-throughput yeast two-hybrid interactors (CREB5, POU4F2, TBC1D7, CINP) that are
not part of the established cobalamin-trafficking machinery and are of unclear
biological relevance to MMADHC function.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Per curation guidance, bare "protein binding" is uninformative and this comes from a
genome-scale two-hybrid screen whose hits are not the biologically meaningful partners
(MMACHC, MTR, MTRR). Not removed (experimental IPI), but marked as over-annotated; the
informative partners are captured by the molecular carrier activity and cobalamin
metabolic process terms.
supported_by:
- reference_id: PMID:32296183
supporting_text: >-
we present a human 'all-by-all' reference interactome map of human binary protein
interactions, or 'HuRI'.
- term:
id: GO:0009235
label: cobalamin metabolic process
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9759218
qualifier: involved_in
review:
summary: >-
Reactome pathway annotation (Cobalamin metabolism) placing MMADHC in cobalamin
metabolic process. Consistent with all other evidence for this gene.
action: ACCEPT
reason: >-
Traceable author statement from Reactome for a core biological process; concordant
with the IBA/IDA/IEA annotations to the same term.
supported_by:
- reference_id: PMID:23270877
supporting_text: MMADHC acts as a branch point for vitamin B(12) delivery to
- term:
id: GO:0005739
label: mitochondrion
evidence_type: HTP
original_reference_id: PMID:34800366
qualifier: located_in
review:
summary: >-
High-throughput detection of MMADHC in a high-confidence human mitochondrial proteome,
corroborating the mitochondrial pool identified by immunofluorescence/fractionation
and the predicted mitochondrial transit peptide.
action: KEEP_AS_NON_CORE
reason: >-
Confirms mitochondrial localization but this compartment is secondary to the cytosolic
branch-point activity; kept as non-core localization.
supported_by:
- reference_id: PMID:34800366
supporting_text: high-confidence human mitochondrial proteome
- reference_id: PMID:23270877
supporting_text: MMADHC is both mitochondrial and cytoplasmic
- term:
id: GO:0140104
label: molecular carrier activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-3149563
qualifier: enables
review:
summary: >-
Reactome TAS annotation (MMADHC targets transport of cytosolic cob(II)alamin to
mitochondria) to molecular carrier activity, capturing MMADHC's cobalamin
carrier/routing role.
action: ACCEPT
reason: >-
Consistent with the branch-point/adaptor function; molecular carrier activity is the
appropriate non-enzymatic MF term. Redundant with the IBA/IDA/EXP annotations to the
same term.
supported_by:
- reference_id: PMID:23415655
supporting_text: an adapter function for CblD
- term:
id: GO:0140104
label: molecular carrier activity
evidence_type: EXP
original_reference_id: PMID:21071249
qualifier: enables
review:
summary: >-
Experimental support (via Reactome) for cobalamin carrier/adaptor activity, based on
the demonstrated direct interaction of MMADHC with MMACHC, the partner that hands off
the cobalamin cofactor.
action: ACCEPT
reason: >-
The MMACHC-MMADHC interaction underpins MMADHC's role as a downstream cobalamin
carrier/adaptor; molecular carrier activity is the correct MF term.
supported_by:
- reference_id: PMID:21071249
supporting_text: MMADHC was confirmed as a binding
- term:
id: GO:0005829
label: cytosol
evidence_type: IDA
original_reference_id: PMID:23270877
qualifier: located_in
review:
summary: >-
Direct experimental (immunofluorescence and subcellular fractionation) localization of
MMADHC to the cytosol, the compartment where it acts downstream of MMACHC as a
cobalamin branch point.
action: ACCEPT
reason: >-
Well-supported specific cytosolic localization; this is the primary site of MMADHC's
branch-point/adaptor activity and is retained as a core location.
supported_by:
- reference_id: PMID:23270877
supporting_text: MMADHC is both mitochondrial and cytoplasmic
- term:
id: GO:0009235
label: cobalamin metabolic process
evidence_type: IDA
original_reference_id: PMID:22156578
qualifier: acts_upstream_of_or_within
review:
summary: >-
Direct experimental evidence (complementation of cblD patient fibroblasts; mutation
position correlating with biochemical phenotype) that MMADHC acts within cobalamin
metabolism as a branch point balancing cytosolic MeCbl and mitochondrial AdoCbl
synthesis.
action: ACCEPT
reason: >-
Core biological process, directly demonstrated. The acts_upstream_of_or_within
qualifier reflects the regulatory branch-point role.
supported_by:
- reference_id: PMID:22156578
supporting_text: supporting the role of cblD protein as a branch point in
- reference_id: PMID:22156578
supporting_text: correlate with the biochemical phenotype
- term:
id: GO:0140104
label: molecular carrier activity
evidence_type: IDA
original_reference_id: PMID:22156578
qualifier: enables
review:
summary: >-
Direct experimental support for MMADHC's cobalamin carrier/branch-point activity:
a single protein with two functional domains that partition cobalamin between the
cytosolic MeCbl and mitochondrial AdoCbl routes.
action: ACCEPT
reason: >-
Molecular carrier activity is the appropriate non-enzymatic MF term for this
cofactor-partitioning adaptor; directly supported by the phenotype/rescue data.
supported_by:
- reference_id: PMID:22156578
supporting_text: supporting the role of cblD protein as a branch point in
- term:
id: GO:0140104
label: molecular carrier activity
evidence_type: IDA
original_reference_id: PMID:32871076
qualifier: enables
review:
summary: >-
Direct experimental evidence that CblD/MMADHC provides a Cys261 thiolate ligand to
cob(II)alamin bound to CblC/MMACHC, forming an interprotein Co-S coordination complex
used for cofactor translocation in the trafficking pathway - a molecular carrier/handoff
activity.
action: ACCEPT
reason: >-
Biochemical/structural demonstration of direct cobalamin coordination by MMADHC in the
trafficking pathway strongly supports molecular carrier activity as its MF.
supported_by:
- reference_id: PMID:32871076
supporting_text: CblD provides a sulfur ligand to cob(II)alamin bound to CblC
- reference_id: PMID:32871076
supporting_text: Cys-261 on CblD as the sulfur donor
- term:
id: GO:0005829
label: cytosol
evidence_type: IDA
original_reference_id: PMID:23270877
qualifier: is_active_in
review:
summary: >-
Direct experimental evidence that MMADHC is active in the cytosol, where it functions
downstream of MMACHC as the cobalamin branch point (and in complex with MMACHC, MTR
and MTRR).
action: ACCEPT
reason: >-
Cytosol is the primary site of MMADHC's branch-point/adaptor activity; the is_active_in
qualifier is appropriate and this is a core location for the molecular function.
supported_by:
- reference_id: PMID:23270877
supporting_text: MMADHC is both mitochondrial and cytoplasmic
- term:
id: GO:0009235
label: cobalamin metabolic process
evidence_type: IDA
original_reference_id: PMID:22156578
qualifier: involved_in
review:
summary: >-
Direct experimental involvement in cobalamin metabolic process (branch-point control
of MeCbl/AdoCbl synthesis), demonstrated by expression/complementation of cblD patient
fibroblasts.
action: ACCEPT
reason: >-
Core biological process, directly supported; duplicates the acts_upstream_of_or_within
annotation from the same paper with an involved_in qualifier, both valid.
supported_by:
- reference_id: PMID:22156578
supporting_text: supporting the role of cblD protein as a branch point in
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:27771510
qualifier: enables
review:
summary: >-
Protein binding annotation from co-IP/proximity-ligation demonstrating MMADHC
interactions with methionine synthase (MTR/Q99707), methionine synthase reductase
(MTRR/Q9UBK8) and MMACHC (Q9Y4U1) as part of a cytosolic multiprotein cobalamin-handling
complex. These are biologically meaningful partners, but the term itself is uninformative.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Bare "protein binding" does not convey function; the meaningful interactions
(MMACHC/MTR/MTRR) reflect the cytosolic cobalamin-carrier complex and are captured by
the molecular carrier activity MF and cobalamin metabolic process BP terms. Experimental
IPI, so not removed, but marked over-annotated.
supported_by:
- reference_id: PMID:27771510
supporting_text: >-
processing of Cbl in cytoplasm occurs in a multiprotein complex composed of at least
MS, MSR, MMACHC and MMADHC
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:23415655
qualifier: enables
review:
summary: >-
Protein binding annotation for the MMADHC (CblD)-MMACHC (CblC, Q9Y4U1) interaction,
shown biochemically to isolate a CblC-CblD complex that partitions cobalamin between
the AdoCbl and MeCbl assimilation pathways.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The MMACHC interaction is central to MMADHC biology, but "protein binding" is
uninformative; the functional consequence (adaptor/branch-point cobalamin carrier) is
captured by molecular carrier activity and cobalamin metabolic process. Experimental
IPI, not removed.
supported_by:
- reference_id: PMID:23415655
supporting_text: an adapter function for CblD
- reference_id: PMID:23415655
supporting_text: functions downstream of CblC in the cofactor assimilation pathway
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:23270877
qualifier: located_in
review:
summary: >-
Direct experimental cytoplasmic localization of MMADHC (immunofluorescence/subcellular
fractionation), consistent with its cytosolic branch-point activity.
action: ACCEPT
reason: >-
Correct but more general than the concurrently annotated cytosol (GO:0005829) term.
Accept as valid localization.
supported_by:
- reference_id: PMID:23270877
supporting_text: MMADHC is both mitochondrial and cytoplasmic
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IDA
original_reference_id: PMID:23270877
qualifier: located_in
review:
summary: >-
Direct experimental evidence that MMADHC has a mitochondrial pool in addition to its
cytoplasmic pool, consistent with its role in routing cobalamin toward the
mitochondrial AdoCbl branch and with its predicted mitochondrial transit peptide.
action: KEEP_AS_NON_CORE
reason: >-
Genuine mitochondrial localization, but the decisive branch-point/adaptor activity is
cytosolic; retained as non-core.
supported_by:
- reference_id: PMID:23270877
supporting_text: MMADHC is both mitochondrial and cytoplasmic
- term:
id: GO:0009235
label: cobalamin metabolic process
evidence_type: IDA
original_reference_id: PMID:24722857
qualifier: involved_in
review:
summary: >-
Direct experimental involvement in cobalamin metabolism, from domain-mapping/rescue
experiments showing that specific MMADHC regions differentially regulate AdoCbl and
MeCbl synthesis (mapping to the three cblD phenotypes).
action: ACCEPT
reason: >-
Core biological process, directly demonstrated by functional-domain characterization.
supported_by:
- reference_id: PMID:24722857
supporting_text: specific regions of MMADHC are
- reference_id: PMID:24722857
supporting_text: must be converted into two coenzyme
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-3318571
qualifier: located_in
review:
summary: >-
Reactome TAS annotation localizing MMADHC to the cytosol, consistent with the
experimental cytosolic localization and its cytosolic branch-point function.
action: ACCEPT
reason: >-
Concordant with the IDA cytosol annotation; retained as a core location.
supported_by:
- reference_id: PMID:23270877
supporting_text: MMADHC is both mitochondrial and cytoplasmic
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-3149494
qualifier: located_in
review:
summary: >-
Reactome TAS annotation (MMACHC:cob(II)alamin binds MMADHC) localizing MMADHC to the
cytosol, the compartment where it receives cobalamin from MMACHC.
action: ACCEPT
reason: >-
Concordant with experimental cytosol localization; retained as a core location.
supported_by:
- reference_id: PMID:23270877
supporting_text: MMADHC is both mitochondrial and cytoplasmic
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-3149563
qualifier: located_in
review:
summary: >-
Reactome TAS annotation localizing MMADHC to the cytosol, matching the experimental
cytosolic localization and function.
action: ACCEPT
reason: >-
Concordant with the IDA cytosol annotation; retained as a core location.
supported_by:
- reference_id: PMID:23270877
supporting_text: MMADHC is both mitochondrial and cytoplasmic
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-3204318
qualifier: located_in
review:
summary: >-
Reactome TAS annotation (cob(II)alamin transferred from MMACHC:MMADHC:cob(II)alamin to
MTRR:MTR) localizing MMADHC to the cytosol, consistent with its cytosolic
cobalamin-handoff role within the MMACHC/MTR/MTRR complex.
action: ACCEPT
reason: >-
Concordant with experimental cytosol localization; retained as a core location.
supported_by:
- reference_id: PMID:23270877
supporting_text: MMADHC is both mitochondrial and cytoplasmic
- reference_id: PMID:27771510
supporting_text: >-
processing of Cbl in cytoplasm occurs in a multiprotein complex composed of at least
MS, MSR, MMACHC and MMADHC
core_functions:
- description: >-
Cobalamin-trafficking branch-point/adaptor activity: acting downstream of MMACHC (cblC)
in the cytosol, MMADHC receives the common cob(II)alamin intermediate and partitions it
between the cytosolic methylcobalamin (MeCbl) branch supplying methionine synthase (MTR)
and the mitochondrial adenosylcobalamin (AdoCbl) branch supplying methylmalonyl-CoA
mutase (MMUT).
molecular_function:
id: GO:0140104
label: molecular carrier activity
directly_involved_in:
- id: GO:0009235
label: cobalamin metabolic process
locations:
- id: GO:0005829
label: cytosol
supported_by:
- reference_id: PMID:22156578
supporting_text: supporting the role of cblD protein as a branch point in
- reference_id: PMID:23415655
supporting_text: an adapter function for CblD
- reference_id: PMID:23270877
supporting_text: MMADHC acts as a branch point for vitamin B(12) delivery to
proposed_new_terms: []
suggested_questions:
- question: >-
What molecular signals determine the partitioning of MMADHC between its cytosolic and
mitochondrial pools, and does mitochondrial import of MMADHC itself carry cobalamin?
- question: >-
Is the Cys261-mediated interprotein Co-S coordination with MMACHC-bound cob(II)alamin the
general mechanism of cobalamin handoff, or only one of several transfer modes?
suggested_experiments:
- description: >-
Structure/cryo-EM of the full cytosolic MMACHC-MMADHC-MTR-MTRR complex with bound
cobalamin to define the cofactor-handoff geometry and the basis of MeCbl-versus-AdoCbl
branch selection.
- description: >-
Quantitative flux measurements of MeCbl versus AdoCbl synthesis in cells expressing
domain-swapped or transit-peptide-modified MMADHC variants to test how localization and
domain boundaries set the branch point.
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO terms
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location
vocabulary mapping, accompanied by conservative changes to GO terms applied by
UniProt
findings: []
- id: file:human/MMADHC/MMADHC-uniprot.txt
title: UniProtKB entry Q9H3L0 (MMAD_HUMAN), Cobalamin trafficking protein CblD
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
UniProt record for MMADHC; supports cytoplasmic/mitochondrial localization, the
MMACHC heterodimer, and the coenzyme-partitioning function.
- id: PMID:21071249
title: Interaction between MMACHC and MMADHC, two human proteins participating in
intracellular vitamin B₁₂ metabolism.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Confirms direct MMADHC-MMACHC interaction by SPR and bacterial two-hybrid; supports
the carrier/adaptor role downstream of MMACHC.
- id: PMID:22156578
title: Molecular mechanisms leading to three different phenotypes in the cblD defect
of intracellular cobalamin metabolism.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Establishes MMADHC as a branch point partitioning cytosolic MeCbl vs mitochondrial
AdoCbl synthesis; mutation position correlates with the three cblD phenotypes.
- id: PMID:23270877
title: Subcellular location of MMACHC and MMADHC, two human proteins central to
intracellular vitamin B(12) metabolism.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Direct evidence (immunofluorescence/fractionation) that MMADHC is both cytosolic and
mitochondrial and acts as a branch point downstream of MMACHC.
- id: PMID:23415655
title: The C-terminal domain of CblD interacts with CblC and influences intracellular
cobalamin partitioning.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Shows CblD functions downstream of CblC as an adapter controlling AdoCbl/MeCbl
partitioning; C-terminal domain mediates the CblC interaction.
- id: PMID:24722857
title: Characterization of functional domains of the cblD (MMADHC) gene product.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Domain-mapping/rescue experiments defining regions of MMADHC that differentially
regulate AdoCbl vs MeCbl synthesis, matching the three cblD phenotypes.
- id: PMID:27771510
title: Methionine synthase and methionine synthase reductase interact with MMACHC
and with MMADHC.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Demonstrates a cytosolic multiprotein complex (MMACHC, MMADHC, MTR, MTRR) that
shuttles cobalamin toward methionine synthase.
- id: PMID:32296183
title: A reference map of the human binary protein interactome.
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: >-
Large-scale HuRI binary-interactome map; source of the bare protein-binding IPIs
(CREB5, POU4F2, TBC1D7, CINP) that are not established MMADHC functional partners.
- id: PMID:32871076
title: An Interprotein Co-S Coordination Complex in the B(12)-Trafficking Pathway.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Identifies Cys261 of CblD/MMADHC as a sulfur ligand to MMACHC-bound cob(II)alamin,
defining a molecular cobalamin-handoff mechanism.
- id: PMID:34800366
title: Quantitative high-confidence human mitochondrial proteome and its dynamics
in cellular context.
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: >-
High-throughput mitochondrial proteome detecting MMADHC; corroborates the
mitochondrial pool.
- id: Reactome:R-HSA-9759218
title: Cobalamin (Cbl) metabolism
findings: []
- id: Reactome:R-HSA-3149494
title: MMACHC:cob(II)alamin binds MMADHC
findings: []
- id: Reactome:R-HSA-3149563
title: MMADHC targets transport of cytosolic cob(II)alamin to mitochondria
findings: []
- id: Reactome:R-HSA-3204318
title: cob(II)alamin is transferred from MMACHC:MMADHC:cob(II)alamin to MTRR:MTR
findings: []
- id: Reactome:R-HSA-3318571
title: Defective MMADHC does not bind MMACHC:B12r
findings: []