MT-TM

RNAcentral ID: URS000006E464_9606
Organism: Homo sapiens
Review Status: COMPLETE
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Gene Description

MT-TM encodes mitochondrial tRNA-Met, one of the 22 transfer RNAs encoded by mitochondrial DNA. After excision from the polycistronic mtDNA transcript and post-transcriptional maturation, it is charged with methionine by the corresponding mitochondrial aminoacyl-tRNA synthetase and, in the mitochondrial matrix, acts as the adaptor that reads the methionine codons AUG and AUA (AUR) of the 13 mtDNA-encoded mRNAs on the mitoribosome, delivering methionine to the growing polypeptide. It is the single methionine tRNA of human mitochondria and serves both translation initiation and elongation. Reading of the AUA codon, which is methionine in the mitochondrial code, depends on 5-formylcytidine at wobble position 34, installed by NSUN3 and ALKBH1. Pathogenic variants in MT-TM, like those in other mt-tRNA genes, impair mitochondrial translation and oxidative phosphorylation and cause maternally inherited mitochondrial disease.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0030533 triplet codon-amino acid adaptor activity
TAS NEW
Summary: No GOA annotation exists for MT-TM (RNAcentral/Rfam2GO supplies GO:0030533 for some but not all mt-tRNA sequences). Proposed to record the canonical tRNA adaptor function.
Reason: MT-TM is one of the 22 mtDNA-encoded tRNAs used by the mitochondrial translation machinery; the codon-anticodon adaptor function is carried out by the tRNA itself. The same term is assigned by Rfam2GO to sister mt-tRNAs (e.g. MT-TQ, MT-TH, MT-TS1).
Supporting Evidence:
PMID:28257121
In addition to the standard AUG methionine codon, the single mitochondrial tRNA Methionine (mt-tRNAMet) also recognises AUA during translation initiation and elongation.
PMID:21910628
These mRNAs are translated by the mitochondrial protein synthesis machinery, which uses the 22 species of mitochondrial tRNAs (mt tRNAs) encoded by mtDNA.
GO:0032543 mitochondrial translation
TAS NEW
Summary: Proposed process annotation for the mitochondrial tRNA.
Reason: The tRNA directly performs the decoding step of mitochondrial translation (it is not merely required for it), so involved_in mitochondrial translation is appropriate; this is the specific child of translation that sister mt-tRNAs receive via the MODIFY of their IEA translation annotation.
Supporting Evidence:
PMID:28257121
In addition to the standard AUG methionine codon, the single mitochondrial tRNA Methionine (mt-tRNAMet) also recognises AUA during translation initiation and elongation.
PMID:21910628
These mRNAs are translated by the mitochondrial protein synthesis machinery, which uses the 22 species of mitochondrial tRNAs (mt tRNAs) encoded by mtDNA.

Core Functions

Met-accepting tRNA that reads the methionine codons AUG and AUA (AUR) of mtDNA-encoded mRNAs on the mitoribosome, delivering methionine during mitochondrial translation. As the single methionine tRNA of human mitochondria it serves initiation as well as elongation: it is the species MTFMT formylates and mtIF2 delivers to the ribosomal P site. GO:0032543 is listed because it spans both of those roles.

Supporting Evidence:
  • PMID:28257121
    In addition to the standard AUG methionine codon, the single mitochondrial tRNA Methionine (mt-tRNAMet) also recognises AUA during translation initiation and elongation.
  • PMID:21910628
    These mRNAs are translated by the mitochondrial protein synthesis machinery, which uses the 22 species of mitochondrial tRNAs (mt tRNAs) encoded by mtDNA.

References

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Suggested Questions for Experts

Q: Should GO annotate all 22 mtDNA-encoded tRNAs, including MT-TM, uniformly to triplet codon-amino acid adaptor activity and mitochondrial translation, rather than relying on Rfam2GO coverage that varies between mt-tRNA sequences?

Suggested experts: GO RNA annotation curators

Tags

trna mitochondrial

πŸ“š Additional Documentation

Notes

(MT-TM-notes.md)

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