PICK1 encodes Protein interacting with C kinase 1, a PDZ/BAR-domain scaffold that couples cargo-protein binding to membrane binding and curvature-dependent trafficking. Its best-supported core role is regulation of membrane protein trafficking, especially AMPA receptor GluA2/GluA3 internalization/recycling and synaptic receptor organization, through PDZ-mediated partner selection, PKC-associated signaling, and BAR-domain membrane remodeling.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0043113
receptor clustering
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Receptor clustering is supported by PICK1 PDZ/BAR-dependent organization of synaptic receptor complexes.
Reason: receptor clustering is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
file:human/PICK1/PICK1-deep-research-falcon.md
**PDZ domain (protein interaction module):** In AMPAR biology, authoritative review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain
|
|
GO:0006886
intracellular protein transport
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Intracellular protein transport is central to PICK1 regulation of AMPAR and other membrane-protein trafficking.
Reason: intracellular protein transport is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
|
|
GO:0043005
neuron projection
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Neuron projection localization is consistent with PICK1 function in pre- and postsynaptic neuronal compartments.
Reason: neuron projection is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
PICK1 is described as enriched in brain and localized to **pre- and postsynaptic compartments**, consistent with its role in regulating synaptic receptor trafficking
|
|
GO:0005543
phospholipid binding
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phospholipid binding is supported by the BAR/N-BAR membrane-binding module.
Reason: phospholipid binding is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
**BAR / N‑BAR domain (membrane remodeling module):** BAR domains are classically crescent-shaped, lipid-binding modules involved in membrane curvature during trafficking.
file:human/PICK1/PICK1-deep-research-falcon.md
**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization
|
|
GO:0008021
synaptic vesicle
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Synaptic vesicle localization is consistent with synaptic trafficking functions of PICK1.
Reason: synaptic vesicle is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
PICK1 is described as enriched in brain and localized to **pre- and postsynaptic compartments**, consistent with its role in regulating synaptic receptor trafficking
|
|
GO:0014069
postsynaptic density
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Postsynaptic density localization is supported by PICK1 action at postsynaptic AMPAR complexes.
Reason: postsynaptic density is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
PICK1 is described as enriched in brain and localized to **pre- and postsynaptic compartments**, consistent with its role in regulating synaptic receptor trafficking
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
|
|
GO:0032588
trans-Golgi network membrane
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: trans-Golgi network membrane is plausible as a context-specific PICK1 localization, binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
Reason: trans-Golgi network membrane is secondary to PICK1 membrane protein trafficking and synaptic receptor organization.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
file:human/PICK1/PICK1-deep-research-falcon.md
Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and membrane-remodeling protein** that controls **membrane protein trafficking**, with the strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3) internalization/recycling and synaptic plasticity** through phosphorylation-dependent partner switching and regulated complex formation.
|
|
GO:0097062
dendritic spine maintenance
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Dendritic spine maintenance is supported by PICK1 roles in AMPAR trafficking and synaptic plasticity.
Reason: dendritic spine maintenance is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
file:human/PICK1/PICK1-deep-research-falcon.md
PICK1 is described as enriched in brain and localized to **pre- and postsynaptic compartments**, consistent with its role in regulating synaptic receptor trafficking
|
|
GO:0002092
positive regulation of receptor internalization
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Positive regulation of receptor internalization is a core PICK1-supported process for AMPAR GluA2 trafficking.
Reason: positive regulation of receptor internalization is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
In vivo evidence from mouse hippocampus (kainic acid model) supports a mechanistic switch in which **GluA2 Ser880 phosphorylation** promotes dissociation from GRIP1 and association with PICK1, driving AMPAR endocytosis/internalization; PP2A-mediated dephosphorylation reverses this and disfavors PICK1 association
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
|
|
GO:0005080
protein kinase C binding
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Protein kinase C binding is supported by PICK1 identity as a PKC-alpha-binding protein.
Reason: protein kinase C binding is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
PICK1 was originally cloned/recognized as a **PKCα-binding protein**, a point reiterated in 2023 work on synaptic receptor regulation
|
|
GO:0034315
regulation of Arp2/3 complex-mediated actin nucleation
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: regulation of Arp2/3 complex-mediated actin nucleation is plausible as a context-specific PICK1 localization, binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
Reason: regulation of Arp2/3 complex-mediated actin nucleation is secondary to PICK1 membrane protein trafficking and synaptic receptor organization.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
file:human/PICK1/PICK1-deep-research-falcon.md
Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and membrane-remodeling protein** that controls **membrane protein trafficking**, with the strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3) internalization/recycling and synaptic plasticity** through phosphorylation-dependent partner switching and regulated complex formation.
|
|
GO:0003779
actin binding
|
IEA
GO_REF:0000043 |
KEEP AS NON CORE |
Summary: actin binding is plausible as a context-specific PICK1 localization, binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
Reason: actin binding is secondary to PICK1 membrane protein trafficking and synaptic receptor organization.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
file:human/PICK1/PICK1-deep-research-falcon.md
Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and membrane-remodeling protein** that controls **membrane protein trafficking**, with the strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3) internalization/recycling and synaptic plasticity** through phosphorylation-dependent partner switching and regulated complex formation.
|
|
GO:0005737
cytoplasm
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: cytoplasm is plausible as a context-specific PICK1 localization, binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
Reason: cytoplasm is secondary to PICK1 membrane protein trafficking and synaptic receptor organization.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
A 2024 Molecular Biology of the Cell study reports that in nonpolarized cells PICK1 is typically **cytosolic**, but under **sodium arsenite** stress it relocalizes to **perinuclear aggresomes**, identifying PICK1 as a stress-responsive organizer of protein sequestration/aggregation compartments
|
|
GO:0005856
cytoskeleton
|
IEA
GO_REF:0000044 |
KEEP AS NON CORE |
Summary: cytoskeleton is plausible as a context-specific PICK1 localization, binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
Reason: cytoskeleton is secondary to PICK1 membrane protein trafficking and synaptic receptor organization.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
file:human/PICK1/PICK1-deep-research-falcon.md
Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and membrane-remodeling protein** that controls **membrane protein trafficking**, with the strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3) internalization/recycling and synaptic plasticity** through phosphorylation-dependent partner switching and regulated complex formation.
|
|
GO:0014069
postsynaptic density
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: Postsynaptic density localization is supported by PICK1 action at postsynaptic AMPAR complexes.
Reason: postsynaptic density is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
PICK1 is described as enriched in brain and localized to **pre- and postsynaptic compartments**, consistent with its role in regulating synaptic receptor trafficking
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
|
|
GO:0016020
membrane
|
IEA
GO_REF:0000044 |
KEEP AS NON CORE |
Summary: membrane is plausible as a context-specific PICK1 localization, binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
Reason: membrane is secondary to PICK1 membrane protein trafficking and synaptic receptor organization.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
file:human/PICK1/PICK1-deep-research-falcon.md
Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and membrane-remodeling protein** that controls **membrane protein trafficking**, with the strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3) internalization/recycling and synaptic plasticity** through phosphorylation-dependent partner switching and regulated complex formation.
|
|
GO:0019904
protein domain specific binding
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: Protein domain specific binding is supported by PICK1 PDZ-domain recognition of receptor/cargo C-terminal motifs.
Reason: protein domain specific binding is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
**PDZ domain (protein interaction module):** In AMPAR biology, authoritative review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain
|
|
GO:0043005
neuron projection
|
IEA
GO_REF:0000043 |
ACCEPT |
Summary: Neuron projection localization is consistent with PICK1 function in pre- and postsynaptic neuronal compartments.
Reason: neuron projection is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
PICK1 is described as enriched in brain and localized to **pre- and postsynaptic compartments**, consistent with its role in regulating synaptic receptor trafficking
|
|
GO:0045202
synapse
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Synapse localization is supported by PICK1 enrichment in pre- and postsynaptic compartments.
Reason: synapse is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
PICK1 is described as enriched in brain and localized to **pre- and postsynaptic compartments**, consistent with its role in regulating synaptic receptor trafficking
|
|
GO:0046872
metal ion binding
|
IEA
GO_REF:0000043 |
MARK AS OVER ANNOTATED |
Summary: Metal ion binding is not the functionally informative annotation for PICK1 compared with PDZ/BAR scaffold and membrane-remodeling activities.
Reason: metal ion binding is less informative than the specific PICK1 scaffold mechanism.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization
|
|
GO:0048471
perinuclear region of cytoplasm
|
IEA
GO_REF:0000044 |
KEEP AS NON CORE |
Summary: perinuclear region of cytoplasm is plausible as a context-specific PICK1 localization, binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
Reason: perinuclear region of cytoplasm is secondary to PICK1 membrane protein trafficking and synaptic receptor organization.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
A 2024 Molecular Biology of the Cell study reports that in nonpolarized cells PICK1 is typically **cytosolic**, but under **sodium arsenite** stress it relocalizes to **perinuclear aggresomes**, identifying PICK1 as a stress-responsive organizer of protein sequestration/aggregation compartments
|
|
GO:0005515
protein binding
|
IPI
PMID:11343649 Functional interaction between monoamine plasma membrane tra... |
MARK AS OVER ANNOTATED |
Summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor binding, and identical protein binding are more informative.
Reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization
file:human/PICK1/PICK1-deep-research-falcon.md
**PDZ domain (protein interaction module):** In AMPAR biology, authoritative review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain
|
|
GO:0005515
protein binding
|
IPI
PMID:11802773 Interaction of the synaptic protein PICK1 (protein interacti... |
MARK AS OVER ANNOTATED |
Summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor binding, and identical protein binding are more informative.
Reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization
file:human/PICK1/PICK1-deep-research-falcon.md
**PDZ domain (protein interaction module):** In AMPAR biology, authoritative review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain
|
|
GO:0005515
protein binding
|
IPI
PMID:16713569 A protein-protein interaction network for human inherited at... |
MARK AS OVER ANNOTATED |
Summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor binding, and identical protein binding are more informative.
Reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization
file:human/PICK1/PICK1-deep-research-falcon.md
**PDZ domain (protein interaction module):** In AMPAR biology, authoritative review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain
|
|
GO:0005515
protein binding
|
IPI
PMID:21653829 Protein interactome reveals converging molecular pathways am... |
MARK AS OVER ANNOTATED |
Summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor binding, and identical protein binding are more informative.
Reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization
file:human/PICK1/PICK1-deep-research-falcon.md
**PDZ domain (protein interaction module):** In AMPAR biology, authoritative review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain
|
|
GO:0005515
protein binding
|
IPI
PMID:26787460 Proteomic peptide phage display uncovers novel interactions ... |
MARK AS OVER ANNOTATED |
Summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor binding, and identical protein binding are more informative.
Reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization
file:human/PICK1/PICK1-deep-research-falcon.md
**PDZ domain (protein interaction module):** In AMPAR biology, authoritative review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain
|
|
GO:0005515
protein binding
|
IPI
PMID:28514442 Architecture of the human interactome defines protein commun... |
MARK AS OVER ANNOTATED |
Summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor binding, and identical protein binding are more informative.
Reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization
file:human/PICK1/PICK1-deep-research-falcon.md
**PDZ domain (protein interaction module):** In AMPAR biology, authoritative review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain
|
|
GO:0005515
protein binding
|
IPI
PMID:31413325 HENA, heterogeneous network-based data set for Alzheimer's d... |
MARK AS OVER ANNOTATED |
Summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor binding, and identical protein binding are more informative.
Reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization
file:human/PICK1/PICK1-deep-research-falcon.md
**PDZ domain (protein interaction module):** In AMPAR biology, authoritative review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain
|
|
GO:0005515
protein binding
|
IPI
PMID:32296183 A reference map of the human binary protein interactome. |
MARK AS OVER ANNOTATED |
Summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor binding, and identical protein binding are more informative.
Reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization
file:human/PICK1/PICK1-deep-research-falcon.md
**PDZ domain (protein interaction module):** In AMPAR biology, authoritative review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain
|
|
GO:0005515
protein binding
|
IPI
PMID:32814053 Interactome Mapping Provides a Network of Neurodegenerative ... |
MARK AS OVER ANNOTATED |
Summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor binding, and identical protein binding are more informative.
Reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization
file:human/PICK1/PICK1-deep-research-falcon.md
**PDZ domain (protein interaction module):** In AMPAR biology, authoritative review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain
|
|
GO:0005515
protein binding
|
IPI
PMID:33961781 Dual proteome-scale networks reveal cell-specific remodeling... |
MARK AS OVER ANNOTATED |
Summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor binding, and identical protein binding are more informative.
Reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization
file:human/PICK1/PICK1-deep-research-falcon.md
**PDZ domain (protein interaction module):** In AMPAR biology, authoritative review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain
|
|
GO:0005515
protein binding
|
IPI
PMID:36115835 Quantitative fragmentomics allow affinity mapping of interac... |
MARK AS OVER ANNOTATED |
Summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor binding, and identical protein binding are more informative.
Reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization
file:human/PICK1/PICK1-deep-research-falcon.md
**PDZ domain (protein interaction module):** In AMPAR biology, authoritative review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain
|
|
GO:0005515
protein binding
|
IPI
PMID:37207277 Using brain cell-type-specific protein interactomes to inter... |
MARK AS OVER ANNOTATED |
Summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor binding, and identical protein binding are more informative.
Reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization
file:human/PICK1/PICK1-deep-research-falcon.md
**PDZ domain (protein interaction module):** In AMPAR biology, authoritative review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain
|
|
GO:0042802
identical protein binding
|
IPI
PMID:32296183 A reference map of the human binary protein interactome. |
ACCEPT |
Summary: Identical protein binding is supported by BAR-domain homodimerization and higher-order PICK1 assembly.
Reason: identical protein binding is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
**BAR / N‑BAR domain (membrane remodeling module):** BAR domains are classically crescent-shaped, lipid-binding modules involved in membrane curvature during trafficking.
|
|
GO:0005829
cytosol
|
IDA
GO_REF:0000052 |
KEEP AS NON CORE |
Summary: cytosol is plausible as a context-specific PICK1 localization, binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
Reason: cytosol is secondary to PICK1 membrane protein trafficking and synaptic receptor organization.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
A 2024 Molecular Biology of the Cell study reports that in nonpolarized cells PICK1 is typically **cytosolic**, but under **sodium arsenite** stress it relocalizes to **perinuclear aggresomes**, identifying PICK1 as a stress-responsive organizer of protein sequestration/aggregation compartments
|
|
GO:0005515
protein binding
|
IPI
PMID:16314870 Serine racemase binds to PICK1: potential relevance to schiz... |
MARK AS OVER ANNOTATED |
Summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor binding, and identical protein binding are more informative.
Reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization
file:human/PICK1/PICK1-deep-research-falcon.md
**PDZ domain (protein interaction module):** In AMPAR biology, authoritative review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain
|
|
GO:0050796
regulation of insulin secretion
|
IMP
PMID:29768204 An Amphipathic Helix Directs Cellular Membrane Curvature Sen... |
KEEP AS NON CORE |
Summary: regulation of insulin secretion is plausible as a context-specific PICK1 localization, binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
Reason: regulation of insulin secretion is secondary to PICK1 membrane protein trafficking and synaptic receptor organization.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
file:human/PICK1/PICK1-deep-research-falcon.md
Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and membrane-remodeling protein** that controls **membrane protein trafficking**, with the strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3) internalization/recycling and synaptic plasticity** through phosphorylation-dependent partner switching and regulated complex formation.
|
|
GO:0140090
membrane curvature sensor activity
|
IDA
PMID:29768204 An Amphipathic Helix Directs Cellular Membrane Curvature Sen... |
ACCEPT |
Summary: Membrane curvature sensor activity is supported by PICK1 BAR/N-BAR membrane-remodeling function.
Reason: membrane curvature sensor activity is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
**BAR / N‑BAR domain (membrane remodeling module):** BAR domains are classically crescent-shaped, lipid-binding modules involved in membrane curvature during trafficking.
file:human/PICK1/PICK1-deep-research-falcon.md
**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization
|
|
GO:0001664
G protein-coupled receptor binding
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: G protein-coupled receptor binding is plausible as a context-specific PICK1 localization, binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
Reason: G protein-coupled receptor binding is secondary to PICK1 membrane protein trafficking and synaptic receptor organization.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
file:human/PICK1/PICK1-deep-research-falcon.md
Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and membrane-remodeling protein** that controls **membrane protein trafficking**, with the strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3) internalization/recycling and synaptic plasticity** through phosphorylation-dependent partner switching and regulated complex formation.
|
|
GO:0019904
protein domain specific binding
|
ISS
GO_REF:0000024 |
ACCEPT |
Summary: Protein domain specific binding is supported by PICK1 PDZ-domain recognition of receptor/cargo C-terminal motifs.
Reason: protein domain specific binding is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
**PDZ domain (protein interaction module):** In AMPAR biology, authoritative review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain
|
|
GO:0042802
identical protein binding
|
ISS
GO_REF:0000024 |
ACCEPT |
Summary: Identical protein binding is supported by BAR-domain homodimerization and higher-order PICK1 assembly.
Reason: identical protein binding is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
**BAR / N‑BAR domain (membrane remodeling module):** BAR domains are classically crescent-shaped, lipid-binding modules involved in membrane curvature during trafficking.
|
|
GO:0002092
positive regulation of receptor internalization
|
ISS
GO_REF:0000024 |
ACCEPT |
Summary: Positive regulation of receptor internalization is a core PICK1-supported process for AMPAR GluA2 trafficking.
Reason: positive regulation of receptor internalization is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
In vivo evidence from mouse hippocampus (kainic acid model) supports a mechanistic switch in which **GluA2 Ser880 phosphorylation** promotes dissociation from GRIP1 and association with PICK1, driving AMPAR endocytosis/internalization; PP2A-mediated dephosphorylation reverses this and disfavors PICK1 association
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
|
|
GO:0021782
glial cell development
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: glial cell development is plausible as a context-specific PICK1 localization, binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
Reason: glial cell development is secondary to PICK1 membrane protein trafficking and synaptic receptor organization.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
file:human/PICK1/PICK1-deep-research-falcon.md
Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and membrane-remodeling protein** that controls **membrane protein trafficking**, with the strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3) internalization/recycling and synaptic plasticity** through phosphorylation-dependent partner switching and regulated complex formation.
|
|
GO:0034316
negative regulation of Arp2/3 complex-mediated actin nucleation
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: negative regulation of Arp2/3 complex-mediated actin nucleation is plausible as a context-specific PICK1 localization, binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
Reason: negative regulation of Arp2/3 complex-mediated actin nucleation is secondary to PICK1 membrane protein trafficking and synaptic receptor organization.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
file:human/PICK1/PICK1-deep-research-falcon.md
Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and membrane-remodeling protein** that controls **membrane protein trafficking**, with the strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3) internalization/recycling and synaptic plasticity** through phosphorylation-dependent partner switching and regulated complex formation.
|
|
GO:0036294
cellular response to decreased oxygen levels
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: cellular response to decreased oxygen levels is plausible as a context-specific PICK1 localization, binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
Reason: cellular response to decreased oxygen levels is secondary to PICK1 membrane protein trafficking and synaptic receptor organization.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
file:human/PICK1/PICK1-deep-research-falcon.md
Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and membrane-remodeling protein** that controls **membrane protein trafficking**, with the strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3) internalization/recycling and synaptic plasticity** through phosphorylation-dependent partner switching and regulated complex formation.
|
|
GO:0042149
cellular response to glucose starvation
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: cellular response to glucose starvation is plausible as a context-specific PICK1 localization, binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
Reason: cellular response to glucose starvation is secondary to PICK1 membrane protein trafficking and synaptic receptor organization.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
file:human/PICK1/PICK1-deep-research-falcon.md
Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and membrane-remodeling protein** that controls **membrane protein trafficking**, with the strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3) internalization/recycling and synaptic plasticity** through phosphorylation-dependent partner switching and regulated complex formation.
|
|
GO:0043005
neuron projection
|
ISS
GO_REF:0000024 |
ACCEPT |
Summary: Neuron projection localization is consistent with PICK1 function in pre- and postsynaptic neuronal compartments.
Reason: neuron projection is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
PICK1 is described as enriched in brain and localized to **pre- and postsynaptic compartments**, consistent with its role in regulating synaptic receptor trafficking
|
|
GO:0051015
actin filament binding
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: actin filament binding is plausible as a context-specific PICK1 localization, binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
Reason: actin filament binding is secondary to PICK1 membrane protein trafficking and synaptic receptor organization.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
file:human/PICK1/PICK1-deep-research-falcon.md
Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and membrane-remodeling protein** that controls **membrane protein trafficking**, with the strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3) internalization/recycling and synaptic plasticity** through phosphorylation-dependent partner switching and regulated complex formation.
|
|
GO:0060292
long-term synaptic depression
|
ISS
GO_REF:0000024 |
ACCEPT |
Summary: Long-term synaptic depression is supported as a synaptic plasticity context for PICK1-mediated AMPAR internalization.
Reason: long-term synaptic depression is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
In vivo evidence from mouse hippocampus (kainic acid model) supports a mechanistic switch in which **GluA2 Ser880 phosphorylation** promotes dissociation from GRIP1 and association with PICK1, driving AMPAR endocytosis/internalization; PP2A-mediated dephosphorylation reverses this and disfavors PICK1 association
file:human/PICK1/PICK1-deep-research-falcon.md
Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and membrane-remodeling protein** that controls **membrane protein trafficking**, with the strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3) internalization/recycling and synaptic plasticity** through phosphorylation-dependent partner switching and regulated complex formation.
|
|
GO:0071933
Arp2/3 complex binding
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: Arp2/3 complex binding is plausible as a context-specific PICK1 localization, binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
Reason: Arp2/3 complex binding is secondary to PICK1 membrane protein trafficking and synaptic receptor organization.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
file:human/PICK1/PICK1-deep-research-falcon.md
Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and membrane-remodeling protein** that controls **membrane protein trafficking**, with the strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3) internalization/recycling and synaptic plasticity** through phosphorylation-dependent partner switching and regulated complex formation.
|
|
GO:0097061
dendritic spine organization
|
ISS
GO_REF:0000024 |
ACCEPT |
Summary: Dendritic spine organization is supported through PICK1-dependent AMPAR trafficking and synaptic plasticity.
Reason: dendritic spine organization is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
file:human/PICK1/PICK1-deep-research-falcon.md
PICK1 is described as enriched in brain and localized to **pre- and postsynaptic compartments**, consistent with its role in regulating synaptic receptor trafficking
|
|
GO:0097062
dendritic spine maintenance
|
ISS
GO_REF:0000024 |
ACCEPT |
Summary: Dendritic spine maintenance is supported by PICK1 roles in AMPAR trafficking and synaptic plasticity.
Reason: dendritic spine maintenance is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
file:human/PICK1/PICK1-deep-research-falcon.md
PICK1 is described as enriched in brain and localized to **pre- and postsynaptic compartments**, consistent with its role in regulating synaptic receptor trafficking
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-416639 |
ACCEPT |
Summary: Plasma membrane localization is supported by PICK1 roles in surface receptor internalization and trafficking.
Reason: plasma membrane is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
In vivo evidence from mouse hippocampus (kainic acid model) supports a mechanistic switch in which **GluA2 Ser880 phosphorylation** promotes dissociation from GRIP1 and association with PICK1, driving AMPAR endocytosis/internalization; PP2A-mediated dephosphorylation reverses this and disfavors PICK1 association
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-416985 |
ACCEPT |
Summary: Plasma membrane localization is supported by PICK1 roles in surface receptor internalization and trafficking.
Reason: plasma membrane is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
In vivo evidence from mouse hippocampus (kainic acid model) supports a mechanistic switch in which **GluA2 Ser880 phosphorylation** promotes dissociation from GRIP1 and association with PICK1, driving AMPAR endocytosis/internalization; PP2A-mediated dephosphorylation reverses this and disfavors PICK1 association
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-421007 |
ACCEPT |
Summary: Plasma membrane localization is supported by PICK1 roles in surface receptor internalization and trafficking.
Reason: plasma membrane is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
In vivo evidence from mouse hippocampus (kainic acid model) supports a mechanistic switch in which **GluA2 Ser880 phosphorylation** promotes dissociation from GRIP1 and association with PICK1, driving AMPAR endocytosis/internalization; PP2A-mediated dephosphorylation reverses this and disfavors PICK1 association
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
|
|
GO:0030666
endocytic vesicle membrane
|
TAS
Reactome:R-HSA-416639 |
ACCEPT |
Summary: Endocytic vesicle membrane localization is consistent with PICK1-mediated receptor internalization/recycling.
Reason: endocytic vesicle membrane is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
In vivo evidence from mouse hippocampus (kainic acid model) supports a mechanistic switch in which **GluA2 Ser880 phosphorylation** promotes dissociation from GRIP1 and association with PICK1, driving AMPAR endocytosis/internalization; PP2A-mediated dephosphorylation reverses this and disfavors PICK1 association
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
|
|
GO:0030666
endocytic vesicle membrane
|
TAS
Reactome:R-HSA-421007 |
ACCEPT |
Summary: Endocytic vesicle membrane localization is consistent with PICK1-mediated receptor internalization/recycling.
Reason: endocytic vesicle membrane is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
In vivo evidence from mouse hippocampus (kainic acid model) supports a mechanistic switch in which **GluA2 Ser880 phosphorylation** promotes dissociation from GRIP1 and association with PICK1, driving AMPAR endocytosis/internalization; PP2A-mediated dephosphorylation reverses this and disfavors PICK1 association
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
|
|
GO:0005737
cytoplasm
|
IDA
PMID:16314870 Serine racemase binds to PICK1: potential relevance to schiz... |
KEEP AS NON CORE |
Summary: cytoplasm is plausible as a context-specific PICK1 localization, binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
Reason: cytoplasm is secondary to PICK1 membrane protein trafficking and synaptic receptor organization.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
A 2024 Molecular Biology of the Cell study reports that in nonpolarized cells PICK1 is typically **cytosolic**, but under **sodium arsenite** stress it relocalizes to **perinuclear aggresomes**, identifying PICK1 as a stress-responsive organizer of protein sequestration/aggregation compartments
|
|
GO:0005102
signaling receptor binding
|
ISS
GO_REF:0000024 |
ACCEPT |
Summary: Signaling receptor binding is supported by PICK1 PDZ-domain interactions with receptor cargo such as AMPAR subunits.
Reason: signaling receptor binding is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
**PDZ domain (protein interaction module):** In AMPAR biology, authoritative review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
|
|
GO:0043113
receptor clustering
|
ISS
GO_REF:0000024 |
ACCEPT |
Summary: Receptor clustering is supported by PICK1 PDZ/BAR-dependent organization of synaptic receptor complexes.
Reason: receptor clustering is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
file:human/PICK1/PICK1-deep-research-falcon.md
**PDZ domain (protein interaction module):** In AMPAR biology, authoritative review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain
|
|
GO:0045202
synapse
|
ISS
GO_REF:0000024 |
ACCEPT |
Summary: Synapse localization is supported by PICK1 enrichment in pre- and postsynaptic compartments.
Reason: synapse is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
PICK1 is described as enriched in brain and localized to **pre- and postsynaptic compartments**, consistent with its role in regulating synaptic receptor trafficking
|
|
GO:0005080
protein kinase C binding
|
ISS
GO_REF:0000024 |
ACCEPT |
Summary: Protein kinase C binding is supported by PICK1 identity as a PKC-alpha-binding protein.
Reason: protein kinase C binding is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
PICK1 was originally cloned/recognized as a **PKCα-binding protein**, a point reiterated in 2023 work on synaptic receptor regulation
|
|
GO:0048471
perinuclear region of cytoplasm
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: perinuclear region of cytoplasm is plausible as a context-specific PICK1 localization, binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
Reason: perinuclear region of cytoplasm is secondary to PICK1 membrane protein trafficking and synaptic receptor organization.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
A 2024 Molecular Biology of the Cell study reports that in nonpolarized cells PICK1 is typically **cytosolic**, but under **sodium arsenite** stress it relocalizes to **perinuclear aggresomes**, identifying PICK1 as a stress-responsive organizer of protein sequestration/aggregation compartments
|
|
GO:0005794
Golgi apparatus
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: Golgi apparatus is plausible as a context-specific PICK1 localization, binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
Reason: Golgi apparatus is secondary to PICK1 membrane protein trafficking and synaptic receptor organization.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
file:human/PICK1/PICK1-deep-research-falcon.md
Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and membrane-remodeling protein** that controls **membrane protein trafficking**, with the strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3) internalization/recycling and synaptic plasticity** through phosphorylation-dependent partner switching and regulated complex formation.
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GO:0006468
protein phosphorylation
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ISS
GO_REF:0000024 |
REMOVE |
Summary: PICK1 controls phosphorylation-dependent receptor partner switching as a scaffold, but it does not catalyze protein phosphorylation.
Reason: PICK1 is a phosphorylation-dependent scaffold/trafficking regulator, not a kinase.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
In vivo evidence from mouse hippocampus (kainic acid model) supports a mechanistic switch in which **GluA2 Ser880 phosphorylation** promotes dissociation from GRIP1 and association with PICK1, driving AMPAR endocytosis/internalization; PP2A-mediated dephosphorylation reverses this and disfavors PICK1 association
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GO:0005737
cytoplasm
|
IDA
PMID:11343649 Functional interaction between monoamine plasma membrane tra... |
KEEP AS NON CORE |
Summary: cytoplasm is plausible as a context-specific PICK1 localization, binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
Reason: cytoplasm is secondary to PICK1 membrane protein trafficking and synaptic receptor organization.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
A 2024 Molecular Biology of the Cell study reports that in nonpolarized cells PICK1 is typically **cytosolic**, but under **sodium arsenite** stress it relocalizes to **perinuclear aggresomes**, identifying PICK1 as a stress-responsive organizer of protein sequestration/aggregation compartments
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GO:0005886
plasma membrane
|
IDA
PMID:11343649 Functional interaction between monoamine plasma membrane tra... |
ACCEPT |
Summary: Plasma membrane localization is supported by PICK1 roles in surface receptor internalization and trafficking.
Reason: plasma membrane is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
In vivo evidence from mouse hippocampus (kainic acid model) supports a mechanistic switch in which **GluA2 Ser880 phosphorylation** promotes dissociation from GRIP1 and association with PICK1, driving AMPAR endocytosis/internalization; PP2A-mediated dephosphorylation reverses this and disfavors PICK1 association
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
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GO:0015844
monoamine transport
|
IDA
PMID:11343649 Functional interaction between monoamine plasma membrane tra... |
KEEP AS NON CORE |
Summary: monoamine transport is plausible as a context-specific PICK1 localization, binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
Reason: monoamine transport is secondary to PICK1 membrane protein trafficking and synaptic receptor organization.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
file:human/PICK1/PICK1-deep-research-falcon.md
Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and membrane-remodeling protein** that controls **membrane protein trafficking**, with the strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3) internalization/recycling and synaptic plasticity** through phosphorylation-dependent partner switching and regulated complex formation.
|
|
GO:0042734
presynaptic membrane
|
IDA
PMID:11343649 Functional interaction between monoamine plasma membrane tra... |
KEEP AS NON CORE |
Summary: presynaptic membrane is plausible as a context-specific PICK1 localization, binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
Reason: presynaptic membrane is secondary to PICK1 membrane protein trafficking and synaptic receptor organization.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
file:human/PICK1/PICK1-deep-research-falcon.md
Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and membrane-remodeling protein** that controls **membrane protein trafficking**, with the strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3) internalization/recycling and synaptic plasticity** through phosphorylation-dependent partner switching and regulated complex formation.
|
|
GO:0045161
neuronal ion channel clustering
|
TAS
PMID:11343649 Functional interaction between monoamine plasma membrane tra... |
ACCEPT |
Summary: Neuronal ion channel clustering is consistent with PICK1 synaptic receptor clustering and trafficking roles.
Reason: neuronal ion channel clustering is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
Supporting Evidence:
file:human/PICK1/PICK1-deep-research-falcon.md
Across the recent literature, PICK1’s primary molecular role is best described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes**
file:human/PICK1/PICK1-deep-research-falcon.md
PICK1 is described as enriched in brain and localized to **pre- and postsynaptic compartments**, consistent with its role in regulating synaptic receptor trafficking
|
The research report should be a detailed narrative explaining the function, biological processes, and localization of the gene product. Citations should be given for all claims.
You should prioritize authoritative reviews and primary scientific literature when conducting research. You can supplement
this with annotations you find in gene/protein databases, but these can be outdated or inaccurate.
We are specifically interested in the primary function of the gene - for enzymes, what reaction is catalyzed, and what is the substrate specificity? For transporters, what is the substrate? For structural proteins or adapters, what is the broader structural role? For signaling molecules, what is the role in the pathway.
We are interested in where in or outside the cell the gene product carries out its function.
We are also interested in the signaling or biochemical pathways in which the gene functions. We are less interested in broad pleiotropic effects, except where these elucidate the precise role.
Include evidence where possible. We are interested in both experimental evidence as well as inference from structure, evolution, or bioinformatic analysis. Precise studies should be prioritized over high-throughput, where available.
The gene symbol PICK1 in the retrieved literature corresponds to Protein interacting with C kinase 1 / PRKCA-binding protein in Homo sapiens, matching the UniProt entry Q9NRD5. Multiple 2023–2024 sources explicitly describe PICK1 as a PKCα-binding protein containing both a PDZ domain and a BAR (N‑BAR) domain, consistent with the UniProt-provided domain architecture and synonyms (zhu2023them1muscarinic pages 1-4, song2023investigatingthemechanical pages 1-2).
PICK1 is a dual-domain scaffolding/adaptor protein that couples (i) PDZ-domain–mediated binding to C-terminal motifs on cargo proteins with (ii) BAR/N‑BAR–mediated lipid/membrane binding and remodeling, enabling regulation of membrane protein trafficking and compartmentalization (rathod2023ampaglua2subunit pages 1-4, cao2023molecularmechanismsof pages 1-2, song2023investigatingthemechanical pages 1-2).
Across the recent literature, PICK1’s primary molecular role is best described as a PDZ/BAR scaffold that regulates the trafficking and surface availability of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein complex assembly with membrane remodeling and endocytic/recycling processes (cao2023molecularmechanismsof pages 1-2, rathod2023ampaglua2subunit pages 1-4, zhu2023them1muscarinic pages 1-4).
AMPAR trafficking is the dominant experimentally supported pathway for PICK1 in the retrieved 2023–2024 corpus.
(a) PICK1–GluA2/3 binding and ER-to-synapse trafficking logic
A 2023 AMPAR trafficking review states that PICK1 binds the GluA2 C-terminal domain via its PDZ domain and reports that PICK1 can “stimulate the transportation of GluA2 to the ER membrane”, placing PICK1 activity in early AMPAR biogenesis/trafficking steps (cao2023molecularmechanismsof pages 1-2).
(b) Phosphorylation-dependent switching: GRIP1 ↔ PICK1 on GluA2
In vivo evidence from mouse hippocampus (kainic acid model) supports a mechanistic switch in which GluA2 Ser880 phosphorylation promotes dissociation from GRIP1 and association with PICK1, driving AMPAR endocytosis/internalization; PP2A-mediated dephosphorylation reverses this and disfavors PICK1 association (lee2023pdiaugmentskainic pages 9-11).
(c) Quantitative evidence: increasing GluA2:PICK1 binding promotes internalization
Lee et al. (2023) directly tested whether PICK1-mediated internalization is enhanced when upstream redox regulation perturbs PP2A. In mouse hippocampus, PDI knockdown increased GluA2:PICK1 binding to 1.27-fold of control (p < 0.001), and kainic acid (KA) further enhanced binding under PDI knockdown (lee2023pdiaugmentskainic pages 9-11). The authors interpret this as a mechanism facilitating PICK1-mediated AMPAR internalization via increased GluA2 S880 phosphorylation (lee2023pdiaugmentskainic pages 9-11).
(d) Cholinergic regulation: M1 muscarinic receptor → PICK1 → GluA2 endocytosis
Zhu et al. (2023) report that activation of the M1 muscarinic acetylcholine receptor (77-LH-28-1; 5 µL of 5 µM i.c.v.) promoted surface endocytosis of GluA2, reduced its postsynaptic colocalization with PSD-95, and increased GluA2 Ser880 phosphorylation, with the PICK1–GluA2 interaction required for M1-mediated postsynaptic GluA2 regulation (zhu2023them1muscarinic pages 1-4).
PICK1 was originally cloned/recognized as a PKCα-binding protein, a point reiterated in 2023 work on synaptic receptor regulation (zhu2023them1muscarinic pages 1-4). In a broader mechanistic synthesis of PICK1 biology, PICK1 is described as targeting activated PKC to AMPAR-associated complexes and thereby influencing receptor surface levels (hendrix2025utilizingafdesignfor pages 8-9).
In an authoritative 2023 review of AMPAR trafficking, Ca2+-dependent CaMKII activation is reported to promote formation of a CaMKII–PICK1 complex (cao2023molecularmechanismsof pages 1-2). This supports a model in which PICK1 participates in activity-dependent receptor trafficking regulated by Ca2+-linked kinases.
PICK1 is described as enriched in brain and localized to pre- and postsynaptic compartments, consistent with its role in regulating synaptic receptor trafficking (rathod2023ampaglua2subunit pages 1-4, zhu2023them1muscarinic pages 1-4).
The 2023 AMPAR trafficking review explicitly situates PICK1 in early trafficking steps by stating that PICK1 binds GluA2 and can stimulate its transport to the ER membrane, implying a role beyond the plasma membrane/PSD alone (cao2023molecularmechanismsof pages 1-2).
A 2024 Molecular Biology of the Cell study reports that in nonpolarized cells PICK1 is typically cytosolic, but under sodium arsenite stress it relocalizes to perinuclear aggresomes, identifying PICK1 as a stress-responsive organizer of protein sequestration/aggregation compartments (lai2024sodiumarseniteinduces pages 1-2, lai2024sodiumarseniteinduces pages 6-8).
Mechanistically, arsenite:
- Abolished a PDZ-mediated interaction (reported as the PICK1–GluR2 interaction being “completely abolished”) and
- Strongly promoted PICK1 BAR-dependent homodimerization (+544.3 ± 19.52%, P < 0.0001) (lai2024sodiumarseniteinduces pages 6-8).
This connects PICK1’s BAR domain to conditional relocalization and higher-order assembly at perinuclear quality-control organelles (lai2024sodiumarseniteinduces pages 6-8).
| Section | Item | System/Context | Function / Key Result | Quantitative detail | Citation |
|---|---|---|---|---|---|
| Domain | PDZ domain | Human PICK1 scaffold | Recognizes C-terminal PDZ ligands on partner proteins; mediates protein-protein interactions central to AMPAR/GluA2 trafficking and synaptic targeting; originally identified in a PKCα-binding protein context | No single universal value reported in the cited excerpts | (rathod2023ampaglua2subunit pages 1-4, zhu2023them1muscarinic pages 1-4, cao2023molecularmechanismsof pages 1-2) |
| Domain | BAR / N-BAR domain | Human PICK1 scaffold | Lipid-binding, membrane-remodeling, curvature-sensing/inducing module; supports synaptic targeting, membrane association, receptor trafficking, and stress-induced higher-order assembly | MD simulations found directional asymmetry: during downward steering all 67 native inter-monomer residue pairs broke and 17 new pairs formed, whereas upward steering retained 35/67 native pairs and formed 23 new pairs | (zhu2023them1muscarinic pages 1-4, song2023investigatingthemechanical pages 6-7) |
| Partner / pathway | PRKCA / PKCα | Original PICK1 identification; synaptic signaling | PICK1 is described as a PKCα-binding protein and can target activated PKC to AMPAR-associated complexes, linking phosphorylation to receptor trafficking/plasticity | Qualitative mechanism in cited excerpts | (hendrix2025utilizingafdesignfor pages 8-9, zhu2023them1muscarinic pages 1-4) |
| Partner / pathway | AMPAR GluA2 | Postsynaptic receptor trafficking | Best-established PICK1 cargo/partner in the cited literature; PICK1 binds the GluA2 C-terminus via its PDZ domain and promotes internalization / intracellular retention during LTD-related processes | GluA2:PICK1 binding increased to 1.27-fold after PDI knockdown in mouse hippocampus | (rathod2023ampaglua2subunit pages 1-4, zhu2023them1muscarinic pages 1-4, cao2023molecularmechanismsof pages 1-2, lee2023pdiaugmentskainic pages 9-11) |
| Partner / pathway | GRIP1 | AMPAR trafficking switch | GRIP1 opposes PICK1 on GluA2 trafficking: GRIP1 favors surface expression, while GluA2 S880 phosphorylation promotes GRIP1 dissociation and PICK1 association, driving AMPAR endocytosis | Mechanistic switch centered on GluA2 Ser880 dephosphorylation/phosphorylation; no single effect size in excerpt | (lee2023pdiaugmentskainic pages 9-11) |
| Partner / pathway | PP2A | GluA2 phosphorylation control | PP2A dephosphorylates GluA2 Ser880, weakening PICK1 association and favoring GRIP1 rebinding; inhibition of PP2A facilitates PICK1-mediated AMPAR internalization | In Lee 2023, oxidation-linked PP2A inhibition was proposed to increase PICK1-mediated internalization; GluA2:PICK1 binding rose 1.27-fold | (lee2023pdiaugmentskainic pages 9-11) |
| Partner / pathway | CaMKII | Activity-dependent AMPAR regulation | Ca2+-dependent CaMKII activation forms a CaMKII-PICK1 complex in AMPAR trafficking models; both CaMKII and PKC impinge on AMPAR phosphosites relevant to PICK1 function | No standalone numeric value in cited excerpt | (cao2023molecularmechanismsof pages 1-2, lee2023pdiaugmentskainic pages 9-11) |
| Partner / pathway | M1 muscarinic acetylcholine receptor pathway | Cholinergic control of postsynaptic AMPARs | M1 receptor activation regulates postsynaptic GluA2 surface expression through PICK1-dependent mechanisms, coupling cholinergic signaling to AMPAR endocytosis | 77-LH-28-1 delivered i.c.v. at 5 µL of 5 µM; Fsc231 used at 5 µL of 50 µM in the study | (zhu2023them1muscarinic pages 1-4) |
| Localization | Synapse / postsynaptic density | Neurons | PICK1 is enriched in pre/postsynaptic neural compartments and acts at postsynaptic AMPAR complexes to regulate receptor localization and plasticity | Qualitative localization in cited excerpts | (rathod2023ampaglua2subunit pages 1-4, zhu2023them1muscarinic pages 1-4) |
| Localization | ER / early secretory pathway | AMPAR trafficking pathway | Review evidence states PICK1 binds GluA2 and stimulates trafficking toward the ER membrane / early secretory pathway steps in AMPAR biogenesis and movement | Qualitative localization in cited excerpt | (cao2023molecularmechanismsof pages 1-2) |
| Localization | Cytosol / perinuclear region | Nonpolarized cells, heterologous cells | PICK1 is generally cytosolic with occasional perinuclear structures under basal conditions | Qualitative basal localization | (rathod2023ampaglua2subunit pages 1-4, lai2024sodiumarseniteinduces pages 1-2) |
| Localization | Perinuclear aggresome | Stress response in HEK293T cells | Under arsenite stress, PICK1 relocalizes from diffuse cytosol to perinuclear aggresomes in a BAR-domain-dependent manner | Detergent-insoluble PICK1 increased by ~191.2 ± 20.79 (P = 0.008); soluble fraction decreased by 32.77 ± 3.28% (P = 0.006) | (lai2024sodiumarseniteinduces pages 6-8) |
| Recent study (2023) | Cao 2023 review | Nervous system / AMPAR trafficking review | Summarizes that GluA2 C-terminal PDZ ligands bind PICK1 and GRIP1; PICK1 binds GluA2 via its PDZ domain and participates in ER-to-synapse trafficking logic and CaMKII-linked regulation | Review, no primary effect size | (cao2023molecularmechanismsof pages 1-2) |
| Recent study (2023) | Zhu 2023 | Mouse brain, M1 mAChR activation | M1 receptor activation promoted postsynaptic GluA2 endocytosis, reduced GluA2-PSD95 colocalization, and increased GluA2 Ser880 phosphorylation in a PICK1-dependent pathway | 77-LH-28-1: 5 µL of 5 µM i.c.v.; surface biotinylation used 1 mg/mL sulfo-NHS-LC-biotin; Fsc231: 5 µL of 50 µM; n = 3 replicates | (zhu2023them1muscarinic pages 1-4) |
| Recent study (2023) | Lee 2023 | Mouse hippocampus / kainic acid model | PDI knockdown facilitated PICK1-mediated AMPAR internalization by increasing GluA2 Ser880 phosphorylation and strengthening GluA2:PICK1 interaction | GluA2:PICK1 binding increased to 1.27-fold of control (p < 0.001); KA further enhanced binding in PDI-siRNA animals; n = 7 | (lee2023pdiaugmentskainic pages 9-11) |
| Recent study (2023) | Rathod 2023 | In silico PDZ inhibitor discovery | Pharmacophore/docking/MD campaign identified candidate competitive and allosteric PICK1 PDZ inhibitors as potential neurological leads | 10 libraries; 340,731,400 molecules and 1,603,779,177 conformers screened; docking scores: Hit_I -9.0, Hit_III -8.9, Hit_IV -9.2, control BQA -8.6 kcal/mol; Hit_II ESOL LogS -3.47 | (rathod2023ampaglua2subunit pages 22-26) |
| Recent study (2023) | Song 2023 | Molecular dynamics of PICK1 N-BAR dimer | Mechanical simulations support that helix kinks and interaction networks confer flexibility needed for membrane engagement and asymmetric responses to force | Downward steering broke all 67 native residue pairs and formed 17 new ones; upward steering retained 35/67 and formed 23 new ones | (song2023investigatingthemechanical pages 6-7) |
| Recent study (2024) | Fadahunsi 2024 | Human genetics + obese mouse intervention | GWAS linked PICK1 locus to adiposity; pharmacologic PDZ inhibition with mPD5 produced sustained anti-obesity effects in mice, supporting translational targeting of PICK1 | Lead SNP rs4821764 P = 4.9 × 10−12; rs17752670 blood eQTL P = 3.3 × 10−106; 56 mg/kg tolerated; 14-day daily s.c. mPD5 caused 9.8% vehicle-corrected weight loss | (fadahunsi2024targetingpostsynapticglutamate pages 1-2, fadahunsi2024targetingpostsynapticglutamate pages 2-4) |
| Recent study (2024) | Lai 2024 | HEK293T arsenite stress / aggresome biology | Arsenite drove PICK1 BAR-dependent homodimerization, abolished PICK1-GluR2 interaction, shifted PICK1 to aggresomes, and promoted insoluble aggregate formation | PICK1 homodimerization +544.3 ± 19.52% (P < 0.0001); competitive coIP favored PICK1-PICK1 +397.7 ± 4.27% vs PICK1-ICA1 +59.8 ± 3.31%; insoluble pellet +191.2 ± 20.79 (P = 0.008) | (lai2024sodiumarseniteinduces pages 6-8) |
| Recent study (2024) | Ou 2024 | Nasopharyngeal carcinoma cells and xenografts | PICK1 acted as a tumor suppressor in NPC by inhibiting migration, invasion, proliferation, tumor growth, metastasis, and Wnt/β-catenin pathway output | Tail-vein metastasis experiments used n = 5 mice/group; in vitro and in vivo differences were reported as significant with p < 0.01 / *p < 0.001, but effect sizes were not numerically tabulated in the excerpt | (ou2024pick1inhibitsthe pages 2-7) |
Table: This table consolidates the core functional annotation of human PICK1, including its PDZ and BAR domains, key partners and pathways, subcellular localization, and major 2023–2024 findings. It is designed to support a narrative research report with quick access to mechanisms, applications, and quantitative study results.
Fadahunsi et al. (Science Advances, March 2024, https://doi.org/10.1126/sciadv.adg2636) integrated human genetics and mouse pharmacology:
- Human genetics: loci in/near PICK1 reached genome-wide significance for adiposity traits; the paper reports a lead SNP rs4821764 (P = 4.9 × 10−12) and a blood eQTL for PICK1 rs17752670 (P = 3.3 × 10−106) (fadahunsi2024targetingpostsynapticglutamate pages 1-2, fadahunsi2024targetingpostsynapticglutamate pages 2-4).
- In vivo intervention: a lipidated dimeric PICK1 PDZ-targeting peptide inhibitor (mPD5) produced 9.8% vehicle-corrected weight loss over 14 days (once-daily s.c.), with 56 mg/kg identified as a tolerated dose for chronic studies (fadahunsi2024targetingpostsynapticglutamate pages 2-4).
This is among the strongest recent in vivo demonstrations that PICK1 PDZ targeting can drive a durable physiological phenotype with therapeutic framing (fadahunsi2024targetingpostsynapticglutamate pages 2-4).
Lai et al. (Molecular Biology of the Cell, October 2024, https://doi.org/10.1091/mbc.e24-05-0201) provide quantitative evidence that arsenite selectively promotes PICK1–PICK1 assembly and insolubility:
- PICK1 homodimerization increased +544.3 ± 19.52% (P < 0.0001).
- PICK1 shifted toward detergent-insoluble fractions (pellet ~+191.2 ± 20.79, P = 0.008) with decreased soluble fraction (−32.77 ± 3.28%, P = 0.006) (lai2024sodiumarseniteinduces pages 6-8).
This work expands PICK1 biology beyond synapses, tying it to proteostasis-related compartmentalization relevant to neurodegeneration hypotheses (lai2024sodiumarseniteinduces pages 6-8).
Lee et al. (Scientific Reports, August 2023, https://doi.org/10.1038/s41598-023-41014-7) support a model in which upstream redox state (via PDI) can enhance PICK1-mediated AMPAR internalization by promoting GluA2 S880 phosphorylation and increasing PICK1 binding (lee2023pdiaugmentskainic pages 9-11). The directly quantified increase in GluA2:PICK1 binding (1.27-fold, p < 0.001) provides an experimentally anchored statistic linking PICK1 complex formation to trafficking outcomes (lee2023pdiaugmentskainic pages 9-11).
Zhu et al. (Psychopharmacology, December 2023, https://doi.org/10.1007/s00213-022-06304-4) provide a pathway-level example of how a GPCR (M1 mAChR) can modulate postsynaptic receptor composition through PICK1-dependent GluA2 trafficking (zhu2023them1muscarinic pages 1-4).
Song et al. (Current Protein & Peptide Science, December 2023, https://doi.org/10.2174/1389203724666230522093842) used steered molecular dynamics to infer anisotropic mechanical responses of the PICK1 BAR dimer and detailed inter-monomer contact changes under force (e.g., downward steering broke all 67 native residue pairs; upward steering retained 35/67 and formed 23 new pairs) (song2023investigatingthemechanical pages 6-7, song2023investigatingthemechanical pages 1-2). While computational, this supports current mechanistic thinking that BAR-domain flexibility and interaction networks underlie membrane engagement and curvature-related function (song2023investigatingthemechanical pages 1-2).
Three convergent application streams appear in 2023–2024 evidence:
1. Anti-obesity intervention: pharmacological PDZ targeting with mPD5 produces sustained weight loss in obese mice (9.8% vehicle-corrected) (fadahunsi2024targetingpostsynapticglutamate pages 2-4).
2. Neurological disease targeting rationale: PDZ-mediated PICK1–GluA2 interactions are widely framed as druggable points for conditions involving synaptic plasticity dysregulation; 2023 inhibitor-design work positions the PDZ domain as a therapeutic target (rathod2023ampaglua2subunit pages 1-4, rathod2023ampaglua2subunit pages 22-26).
3. Neurodegeneration/proteostasis hypothesis: arsenite-triggered aggresome localization and insolubility suggest PICK1 could participate in stress-linked aggregation pathways, relevant to neurodegenerative disease models (lai2024sodiumarseniteinduces pages 6-8).
Ou et al. (Cell Death & Disease, April 2024, https://doi.org/10.1038/s41419-024-06687-6) report that PICK1 suppresses migration/invasion and inhibits tumor growth and lung metastasis in nasopharyngeal carcinoma models; in tail-vein metastasis experiments they report n = 5 mice per group, and mechanistically find that PICK1 inhibits classical Wnt/β-catenin signaling (β-catenin, c-Myc, CyclinD1) (ou2024pick1inhibitsthe pages 2-7). This positions PICK1 as a potential tumor suppressor/prognostic marker in NPC, although generalization beyond this cancer context requires caution (ou2024pick1inhibitsthe pages 2-7).
Across authoritative 2023–2024 review/primary sources, the consensus is:
- PICK1 is a PDZ/BAR scaffold whose PDZ interactions with receptor C-termini (especially AMPAR GluA2/3) place it at the center of activity-dependent receptor trafficking and plasticity mechanisms (cao2023molecularmechanismsof pages 1-2, fadahunsi2024targetingpostsynapticglutamate pages 2-4, zhu2023them1muscarinic pages 1-4).
- Phosphorylation state controls partner switching (GRIP1 ↔ PICK1) on GluA2, providing a biochemical mechanism for directional trafficking (surface retention versus internalization) (lee2023pdiaugmentskainic pages 9-11).
- BAR-domain–dependent membrane/proteostasis behaviors extend PICK1’s functions beyond synapses, enabling stress-induced relocalization and assembly (lai2024sodiumarseniteinduces pages 6-8, song2023investigatingthemechanical pages 1-2).
The recent evidence supports a unifying interpretation: PICK1’s apparent pleiotropy (synaptic plasticity, obesity, cancer, aggresomes) is consistent with a core mechanistic toolkit—PDZ-based cargo selection + BAR-based membrane/assembly control—deployed in different cellular contexts (fadahunsi2024targetingpostsynapticglutamate pages 2-4, lai2024sodiumarseniteinduces pages 6-8, ou2024pick1inhibitsthe pages 2-7).
OpenTargets reports PICK1 disease-target associations including Alzheimer disease, Parkinson disease, broader neurodegenerative disease, lysosomal storage disease, and male infertility due to globozoospermia (OpenTargets context) (OpenTargets Search: -PICK1). These associations are useful for hypothesis generation but should be interpreted alongside direct mechanistic evidence from primary studies.
Human PICK1 (Q9NRD5) is best annotated as a PDZ/BAR scaffolding and membrane-remodeling protein that controls membrane protein trafficking, with the strongest 2023–2024 evidence supporting roles in AMPAR (GluA2/3) internalization/recycling and synaptic plasticity through phosphorylation-dependent partner switching and regulated complex formation. Recent work extends PICK1 relevance to system-level phenotypes (obesity via PDZ targeting), stress-driven aggresome biology, and context-specific tumor suppressor signaling via Wnt/β-catenin, motivating ongoing therapeutic and mechanistic studies (fadahunsi2024targetingpostsynapticglutamate pages 2-4, lee2023pdiaugmentskainic pages 9-11, lai2024sodiumarseniteinduces pages 6-8, ou2024pick1inhibitsthe pages 2-7).
References
(zhu2023them1muscarinic pages 1-4): Zengyan Zhu, Wenjuan Wang, Chao Gu, Mei Wang, and Yinghui Yan. The m1 muscarinic acetylcholine receptor regulates the surface expression of the ampa receptor subunit glua2 via pick1. Psychopharmacology, 240:239-248, Dec 2023. URL: https://doi.org/10.1007/s00213-022-06304-4, doi:10.1007/s00213-022-06304-4. This article has 3 citations and is from a peer-reviewed journal.
(song2023investigatingthemechanical pages 1-2): Shenghan Song, Tongtong Li, Amy O. Stevens, Taha Raad, and Yi He. Investigating the mechanical properties and flexibility of n-bar domains in pick1 by molecular dynamics simulations. Current Protein & Peptide Science, 24:865-877, Dec 2023. URL: https://doi.org/10.2174/1389203724666230522093842, doi:10.2174/1389203724666230522093842. This article has 5 citations and is from a peer-reviewed journal.
(rathod2023ampaglua2subunit pages 1-4): Shravan B. Rathod, Pravin B. Prajapati, Ranjana Pal, and Mohmedyasin F. Mansuri. Ampa glua2 subunit competitive inhibitors for pick1 pdz domain: pharmacophore-based virtual screening, molecular docking, molecular dynamics simulation, and adme studies. Journal of Biomolecular Structure and Dynamics, 41:336-351, Nov 2023. URL: https://doi.org/10.1080/07391102.2021.2006086, doi:10.1080/07391102.2021.2006086. This article has 7 citations and is from a peer-reviewed journal.
(cao2023molecularmechanismsof pages 1-2): Yi-Yang Cao, Ling-Ling Wu, Xiao-Nan Li, Yu-Lian Yuan, Wan-Wei Zhao, Jing-Xuan Qi, Xu-Yu Zhao, Natalie Ward, and Jiao Wang. Molecular mechanisms of ampa receptor trafficking in the nervous system. International Journal of Molecular Sciences, 25:111, Dec 2023. URL: https://doi.org/10.3390/ijms25010111, doi:10.3390/ijms25010111. This article has 30 citations.
(fadahunsi2024targetingpostsynapticglutamate pages 2-4): Nicole Fadahunsi, Jonas Petersen, Sophia Metz, Alexander Jakobsen, Cecilie Vad Mathiesen, Alberte Silke Buch-Rasmussen, Nigel Kurgan, Jeppe Kjærgaard Larsen, Rita C. Andersen, Thomas Topilko, Charlotte Svendsen, Mia Apuschkin, Grethe Skovbjerg, Jan Hendrik Schmidt, Grace Houser, Sara Elgaard Jager, Anders Bach, Atul S. Deshmukh, Tuomas O. Kilpeläinen, Kristian Strømgaard, Kenneth L. Madsen, and Christoffer Clemmensen. Targeting postsynaptic glutamate receptor scaffolding proteins psd-95 and pick1 for obesity treatment. Science Advances, Mar 2024. URL: https://doi.org/10.1126/sciadv.adg2636, doi:10.1126/sciadv.adg2636. This article has 17 citations and is from a highest quality peer-reviewed journal.
(song2023investigatingthemechanical pages 6-7): Shenghan Song, Tongtong Li, Amy O. Stevens, Taha Raad, and Yi He. Investigating the mechanical properties and flexibility of n-bar domains in pick1 by molecular dynamics simulations. Current Protein & Peptide Science, 24:865-877, Dec 2023. URL: https://doi.org/10.2174/1389203724666230522093842, doi:10.2174/1389203724666230522093842. This article has 5 citations and is from a peer-reviewed journal.
(lee2023pdiaugmentskainic pages 9-11): Duk-shin Lee, Tae-Hyun Kim, Hana Park, and Ji-eun Kim. Pdi augments kainic acid-induced seizure activity and neuronal death by inhibiting pp2a-glua2-pick1-mediated ampa receptor internalization in the mouse hippocampus. Scientific Reports, Aug 2023. URL: https://doi.org/10.1038/s41598-023-41014-7, doi:10.1038/s41598-023-41014-7. This article has 6 citations and is from a peer-reviewed journal.
(hendrix2025utilizingafdesignfor pages 8-9): Emily Hendrix, Xinyu Xia, Amy O. Stevens, and Yi He. Utilizing afdesign for developing a small molecule inhibitor of pick 1-pdz. Current protein & peptide science, Aug 2025. URL: https://doi.org/10.2174/0113892037316932240806102854, doi:10.2174/0113892037316932240806102854. This article has 2 citations and is from a peer-reviewed journal.
(lai2024sodiumarseniteinduces pages 1-2): John Ho Chun Lai, Marianthi Tsogka, and Jun Xia. Sodium arsenite induces aggresome formation by promoting pick1 bar domain homodimer formation. Molecular Biology of the Cell, Oct 2024. URL: https://doi.org/10.1091/mbc.e24-05-0201, doi:10.1091/mbc.e24-05-0201. This article has 0 citations and is from a domain leading peer-reviewed journal.
(lai2024sodiumarseniteinduces pages 6-8): John Ho Chun Lai, Marianthi Tsogka, and Jun Xia. Sodium arsenite induces aggresome formation by promoting pick1 bar domain homodimer formation. Molecular Biology of the Cell, Oct 2024. URL: https://doi.org/10.1091/mbc.e24-05-0201, doi:10.1091/mbc.e24-05-0201. This article has 0 citations and is from a domain leading peer-reviewed journal.
(rathod2023ampaglua2subunit pages 22-26): Shravan B. Rathod, Pravin B. Prajapati, Ranjana Pal, and Mohmedyasin F. Mansuri. Ampa glua2 subunit competitive inhibitors for pick1 pdz domain: pharmacophore-based virtual screening, molecular docking, molecular dynamics simulation, and adme studies. Journal of Biomolecular Structure and Dynamics, 41:336-351, Nov 2023. URL: https://doi.org/10.1080/07391102.2021.2006086, doi:10.1080/07391102.2021.2006086. This article has 7 citations and is from a peer-reviewed journal.
(fadahunsi2024targetingpostsynapticglutamate pages 1-2): Nicole Fadahunsi, Jonas Petersen, Sophia Metz, Alexander Jakobsen, Cecilie Vad Mathiesen, Alberte Silke Buch-Rasmussen, Nigel Kurgan, Jeppe Kjærgaard Larsen, Rita C. Andersen, Thomas Topilko, Charlotte Svendsen, Mia Apuschkin, Grethe Skovbjerg, Jan Hendrik Schmidt, Grace Houser, Sara Elgaard Jager, Anders Bach, Atul S. Deshmukh, Tuomas O. Kilpeläinen, Kristian Strømgaard, Kenneth L. Madsen, and Christoffer Clemmensen. Targeting postsynaptic glutamate receptor scaffolding proteins psd-95 and pick1 for obesity treatment. Science Advances, Mar 2024. URL: https://doi.org/10.1126/sciadv.adg2636, doi:10.1126/sciadv.adg2636. This article has 17 citations and is from a highest quality peer-reviewed journal.
(ou2024pick1inhibitsthe pages 2-7): Xiaomin Ou, Yingzi Zhang, Yiqing Xu, Yi Liu, Wenzhi Tu, Chaosu Hu, and Yong Liu. Pick1 inhibits the malignancy of nasopharyngeal carcinoma and serves as a novel prognostic marker. Cell Death & Disease, Apr 2024. URL: https://doi.org/10.1038/s41419-024-06687-6, doi:10.1038/s41419-024-06687-6. This article has 3 citations and is from a peer-reviewed journal.
(OpenTargets Search: -PICK1): Open Targets Query (-PICK1, 5 results). Buniello, A. et al. (2025). Open Targets Platform: facilitating therapeutic hypotheses building in drug discovery. Nucleic Acids Research.
id: Q9NRD5
gene_symbol: PICK1
product_type: PROTEIN
status: COMPLETE
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: 'PICK1 encodes Protein interacting with C kinase 1, a PDZ/BAR-domain scaffold that couples
cargo-protein binding to membrane binding and curvature-dependent trafficking. Its best-supported core
role is regulation of membrane protein trafficking, especially AMPA receptor GluA2/GluA3 internalization/recycling
and synaptic receptor organization, through PDZ-mediated partner selection, PKC-associated signaling,
and BAR-domain membrane remodeling.'
alternative_products:
- name: '1'
id: Q9NRD5-1
- name: '2'
id: Q9NRD5-2
sequence_note: VSP_054902, VSP_054903
existing_annotations:
- term:
id: GO:0043113
label: receptor clustering
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Receptor clustering is supported by PICK1 PDZ/BAR-dependent organization of synaptic
receptor complexes.
action: ACCEPT
reason: receptor clustering is supported as part of PICK1 PDZ/BAR scaffold,
membrane-remodeling, or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PDZ domain (protein interaction module):** In AMPAR biology, authoritative
review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly
to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain'
- term:
id: GO:0006886
label: intracellular protein transport
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Intracellular protein transport is central to PICK1 regulation of AMPAR and other
membrane-protein trafficking.
action: ACCEPT
reason: intracellular protein transport is supported as part of PICK1 PDZ/BAR scaffold,
membrane-remodeling, or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- term:
id: GO:0043005
label: neuron projection
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Neuron projection localization is consistent with PICK1 function in pre- and
postsynaptic neuronal compartments.
action: ACCEPT
reason: neuron projection is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling,
or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: PICK1 is described as enriched in brain and localized to **pre- and
postsynaptic compartments**, consistent with its role in regulating synaptic receptor
trafficking
- term:
id: GO:0005543
label: phospholipid binding
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Phospholipid binding is supported by the BAR/N-BAR membrane-binding module.
action: ACCEPT
reason: phospholipid binding is supported as part of PICK1 PDZ/BAR scaffold,
membrane-remodeling, or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**BAR / N‑BAR domain (membrane remodeling module):** BAR domains are classically
crescent-shaped, lipid-binding modules involved in membrane curvature during trafficking.'
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated
binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane
binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization'
- term:
id: GO:0008021
label: synaptic vesicle
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Synaptic vesicle localization is consistent with synaptic trafficking functions of
PICK1.
action: ACCEPT
reason: synaptic vesicle is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling,
or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: PICK1 is described as enriched in brain and localized to **pre- and
postsynaptic compartments**, consistent with its role in regulating synaptic receptor
trafficking
- term:
id: GO:0014069
label: postsynaptic density
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Postsynaptic density localization is supported by PICK1 action at postsynaptic AMPAR
complexes.
action: ACCEPT
reason: postsynaptic density is supported as part of PICK1 PDZ/BAR scaffold,
membrane-remodeling, or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: PICK1 is described as enriched in brain and localized to **pre- and
postsynaptic compartments**, consistent with its role in regulating synaptic receptor
trafficking
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- term:
id: GO:0032588
label: trans-Golgi network membrane
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: trans-Golgi network membrane is plausible as a context-specific PICK1 localization,
binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking
function.
action: KEEP_AS_NON_CORE
reason: trans-Golgi network membrane is secondary to PICK1 membrane protein trafficking and
synaptic receptor organization.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and
membrane-remodeling protein** that controls **membrane protein trafficking**, with the
strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3)
internalization/recycling and synaptic plasticity** through phosphorylation-dependent
partner switching and regulated complex formation.
- term:
id: GO:0097062
label: dendritic spine maintenance
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Dendritic spine maintenance is supported by PICK1 roles in AMPAR trafficking and
synaptic plasticity.
action: ACCEPT
reason: dendritic spine maintenance is supported as part of PICK1 PDZ/BAR scaffold,
membrane-remodeling, or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: PICK1 is described as enriched in brain and localized to **pre- and
postsynaptic compartments**, consistent with its role in regulating synaptic receptor
trafficking
- term:
id: GO:0002092
label: positive regulation of receptor internalization
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Positive regulation of receptor internalization is a core PICK1-supported process for
AMPAR GluA2 trafficking.
action: ACCEPT
reason: positive regulation of receptor internalization is supported as part of PICK1 PDZ/BAR
scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: In vivo evidence from mouse hippocampus (kainic acid model) supports a
mechanistic switch in which **GluA2 Ser880 phosphorylation** promotes dissociation from
GRIP1 and association with PICK1, driving AMPAR endocytosis/internalization;
PP2A-mediated dephosphorylation reverses this and disfavors PICK1 association
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- term:
id: GO:0005080
label: protein kinase C binding
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Protein kinase C binding is supported by PICK1 identity as a PKC-alpha-binding
protein.
action: ACCEPT
reason: protein kinase C binding is supported as part of PICK1 PDZ/BAR scaffold,
membrane-remodeling, or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: PICK1 was originally cloned/recognized as a **PKCα-binding protein**, a
point reiterated in 2023 work on synaptic receptor regulation
- term:
id: GO:0034315
label: regulation of Arp2/3 complex-mediated actin nucleation
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: regulation of Arp2/3 complex-mediated actin nucleation is plausible as a
context-specific PICK1 localization, binding, or downstream process, but it is secondary to
the core PDZ/BAR receptor-trafficking function.
action: KEEP_AS_NON_CORE
reason: regulation of Arp2/3 complex-mediated actin nucleation is secondary to PICK1 membrane
protein trafficking and synaptic receptor organization.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and
membrane-remodeling protein** that controls **membrane protein trafficking**, with the
strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3)
internalization/recycling and synaptic plasticity** through phosphorylation-dependent
partner switching and regulated complex formation.
- term:
id: GO:0003779
label: actin binding
evidence_type: IEA
original_reference_id: GO_REF:0000043
review:
summary: actin binding is plausible as a context-specific PICK1 localization, binding, or
downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
action: KEEP_AS_NON_CORE
reason: actin binding is secondary to PICK1 membrane protein trafficking and synaptic receptor
organization.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and
membrane-remodeling protein** that controls **membrane protein trafficking**, with the
strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3)
internalization/recycling and synaptic plasticity** through phosphorylation-dependent
partner switching and regulated complex formation.
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: cytoplasm is plausible as a context-specific PICK1 localization, binding, or
downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
action: KEEP_AS_NON_CORE
reason: cytoplasm is secondary to PICK1 membrane protein trafficking and synaptic receptor
organization.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: A 2024 Molecular Biology of the Cell study reports that in nonpolarized
cells PICK1 is typically **cytosolic**, but under **sodium arsenite** stress it
relocalizes to **perinuclear aggresomes**, identifying PICK1 as a stress-responsive
organizer of protein sequestration/aggregation compartments
- term:
id: GO:0005856
label: cytoskeleton
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: cytoskeleton is plausible as a context-specific PICK1 localization, binding, or
downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
action: KEEP_AS_NON_CORE
reason: cytoskeleton is secondary to PICK1 membrane protein trafficking and synaptic receptor
organization.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and
membrane-remodeling protein** that controls **membrane protein trafficking**, with the
strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3)
internalization/recycling and synaptic plasticity** through phosphorylation-dependent
partner switching and regulated complex formation.
- term:
id: GO:0014069
label: postsynaptic density
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: Postsynaptic density localization is supported by PICK1 action at postsynaptic AMPAR
complexes.
action: ACCEPT
reason: postsynaptic density is supported as part of PICK1 PDZ/BAR scaffold,
membrane-remodeling, or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: PICK1 is described as enriched in brain and localized to **pre- and
postsynaptic compartments**, consistent with its role in regulating synaptic receptor
trafficking
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- term:
id: GO:0016020
label: membrane
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: membrane is plausible as a context-specific PICK1 localization, binding, or
downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
action: KEEP_AS_NON_CORE
reason: membrane is secondary to PICK1 membrane protein trafficking and synaptic receptor
organization.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and
membrane-remodeling protein** that controls **membrane protein trafficking**, with the
strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3)
internalization/recycling and synaptic plasticity** through phosphorylation-dependent
partner switching and regulated complex formation.
- term:
id: GO:0019904
label: protein domain specific binding
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: Protein domain specific binding is supported by PICK1 PDZ-domain recognition of
receptor/cargo C-terminal motifs.
action: ACCEPT
reason: protein domain specific binding is supported as part of PICK1 PDZ/BAR scaffold,
membrane-remodeling, or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PDZ domain (protein interaction module):** In AMPAR biology, authoritative
review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly
to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain'
- term:
id: GO:0043005
label: neuron projection
evidence_type: IEA
original_reference_id: GO_REF:0000043
review:
summary: Neuron projection localization is consistent with PICK1 function in pre- and
postsynaptic neuronal compartments.
action: ACCEPT
reason: neuron projection is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling,
or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: PICK1 is described as enriched in brain and localized to **pre- and
postsynaptic compartments**, consistent with its role in regulating synaptic receptor
trafficking
- term:
id: GO:0045202
label: synapse
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: Synapse localization is supported by PICK1 enrichment in pre- and postsynaptic
compartments.
action: ACCEPT
reason: synapse is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or
synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: PICK1 is described as enriched in brain and localized to **pre- and
postsynaptic compartments**, consistent with its role in regulating synaptic receptor
trafficking
- term:
id: GO:0046872
label: metal ion binding
evidence_type: IEA
original_reference_id: GO_REF:0000043
review:
summary: Metal ion binding is not the functionally informative annotation for PICK1 compared
with PDZ/BAR scaffold and membrane-remodeling activities.
action: MARK_AS_OVER_ANNOTATED
reason: metal ion binding is less informative than the specific PICK1 scaffold mechanism.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated
binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane
binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization'
- term:
id: GO:0048471
label: perinuclear region of cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: perinuclear region of cytoplasm is plausible as a context-specific PICK1
localization, binding, or downstream process, but it is secondary to the core PDZ/BAR
receptor-trafficking function.
action: KEEP_AS_NON_CORE
reason: perinuclear region of cytoplasm is secondary to PICK1 membrane protein trafficking and
synaptic receptor organization.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: A 2024 Molecular Biology of the Cell study reports that in nonpolarized
cells PICK1 is typically **cytosolic**, but under **sodium arsenite** stress it
relocalizes to **perinuclear aggresomes**, identifying PICK1 as a stress-responsive
organizer of protein sequestration/aggregation compartments
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:11343649
review:
summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor
binding, and identical protein binding are more informative.
action: MARK_AS_OVER_ANNOTATED
reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated
binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane
binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization'
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PDZ domain (protein interaction module):** In AMPAR biology, authoritative
review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly
to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain'
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:11802773
review:
summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor
binding, and identical protein binding are more informative.
action: MARK_AS_OVER_ANNOTATED
reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated
binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane
binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization'
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PDZ domain (protein interaction module):** In AMPAR biology, authoritative
review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly
to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain'
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16713569
review:
summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor
binding, and identical protein binding are more informative.
action: MARK_AS_OVER_ANNOTATED
reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated
binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane
binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization'
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PDZ domain (protein interaction module):** In AMPAR biology, authoritative
review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly
to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain'
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:21653829
review:
summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor
binding, and identical protein binding are more informative.
action: MARK_AS_OVER_ANNOTATED
reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated
binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane
binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization'
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PDZ domain (protein interaction module):** In AMPAR biology, authoritative
review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly
to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain'
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:26787460
review:
summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor
binding, and identical protein binding are more informative.
action: MARK_AS_OVER_ANNOTATED
reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated
binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane
binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization'
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PDZ domain (protein interaction module):** In AMPAR biology, authoritative
review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly
to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain'
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:28514442
review:
summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor
binding, and identical protein binding are more informative.
action: MARK_AS_OVER_ANNOTATED
reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated
binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane
binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization'
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PDZ domain (protein interaction module):** In AMPAR biology, authoritative
review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly
to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain'
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:31413325
review:
summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor
binding, and identical protein binding are more informative.
action: MARK_AS_OVER_ANNOTATED
reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated
binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane
binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization'
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PDZ domain (protein interaction module):** In AMPAR biology, authoritative
review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly
to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain'
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:32296183
review:
summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor
binding, and identical protein binding are more informative.
action: MARK_AS_OVER_ANNOTATED
reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated
binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane
binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization'
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PDZ domain (protein interaction module):** In AMPAR biology, authoritative
review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly
to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain'
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:32814053
review:
summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor
binding, and identical protein binding are more informative.
action: MARK_AS_OVER_ANNOTATED
reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated
binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane
binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization'
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PDZ domain (protein interaction module):** In AMPAR biology, authoritative
review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly
to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain'
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:33961781
review:
summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor
binding, and identical protein binding are more informative.
action: MARK_AS_OVER_ANNOTATED
reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated
binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane
binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization'
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PDZ domain (protein interaction module):** In AMPAR biology, authoritative
review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly
to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain'
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:36115835
review:
summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor
binding, and identical protein binding are more informative.
action: MARK_AS_OVER_ANNOTATED
reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated
binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane
binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization'
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PDZ domain (protein interaction module):** In AMPAR biology, authoritative
review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly
to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain'
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:37207277
review:
summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor
binding, and identical protein binding are more informative.
action: MARK_AS_OVER_ANNOTATED
reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated
binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane
binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization'
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PDZ domain (protein interaction module):** In AMPAR biology, authoritative
review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly
to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain'
- term:
id: GO:0042802
label: identical protein binding
evidence_type: IPI
original_reference_id: PMID:32296183
review:
summary: Identical protein binding is supported by BAR-domain homodimerization and
higher-order PICK1 assembly.
action: ACCEPT
reason: identical protein binding is supported as part of PICK1 PDZ/BAR scaffold,
membrane-remodeling, or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**BAR / N‑BAR domain (membrane remodeling module):** BAR domains are classically
crescent-shaped, lipid-binding modules involved in membrane curvature during trafficking.'
- term:
id: GO:0005829
label: cytosol
evidence_type: IDA
original_reference_id: GO_REF:0000052
review:
summary: cytosol is plausible as a context-specific PICK1 localization, binding, or downstream
process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
action: KEEP_AS_NON_CORE
reason: cytosol is secondary to PICK1 membrane protein trafficking and synaptic receptor
organization.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: A 2024 Molecular Biology of the Cell study reports that in nonpolarized
cells PICK1 is typically **cytosolic**, but under **sodium arsenite** stress it
relocalizes to **perinuclear aggresomes**, identifying PICK1 as a stress-responsive
organizer of protein sequestration/aggregation compartments
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16314870
review:
summary: Protein binding is too generic for PICK1; PDZ-domain binding, PKC binding, receptor
binding, and identical protein binding are more informative.
action: MARK_AS_OVER_ANNOTATED
reason: protein binding is less informative than the specific PICK1 scaffold mechanism.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated
binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane
binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization'
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PDZ domain (protein interaction module):** In AMPAR biology, authoritative
review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly
to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain'
- term:
id: GO:0050796
label: regulation of insulin secretion
evidence_type: IMP
original_reference_id: PMID:29768204
review:
summary: regulation of insulin secretion is plausible as a context-specific PICK1
localization, binding, or downstream process, but it is secondary to the core PDZ/BAR
receptor-trafficking function.
action: KEEP_AS_NON_CORE
reason: regulation of insulin secretion is secondary to PICK1 membrane protein trafficking and
synaptic receptor organization.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and
membrane-remodeling protein** that controls **membrane protein trafficking**, with the
strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3)
internalization/recycling and synaptic plasticity** through phosphorylation-dependent
partner switching and regulated complex formation.
- term:
id: GO:0140090
label: membrane curvature sensor activity
evidence_type: IDA
original_reference_id: PMID:29768204
review:
summary: Membrane curvature sensor activity is supported by PICK1 BAR/N-BAR
membrane-remodeling function.
action: ACCEPT
reason: membrane curvature sensor activity is supported as part of PICK1 PDZ/BAR scaffold,
membrane-remodeling, or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**BAR / N‑BAR domain (membrane remodeling module):** BAR domains are classically
crescent-shaped, lipid-binding modules involved in membrane curvature during trafficking.'
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated
binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane
binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization'
- term:
id: GO:0001664
label: G protein-coupled receptor binding
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: G protein-coupled receptor binding is plausible as a context-specific PICK1
localization, binding, or downstream process, but it is secondary to the core PDZ/BAR
receptor-trafficking function.
action: KEEP_AS_NON_CORE
reason: G protein-coupled receptor binding is secondary to PICK1 membrane protein trafficking
and synaptic receptor organization.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and
membrane-remodeling protein** that controls **membrane protein trafficking**, with the
strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3)
internalization/recycling and synaptic plasticity** through phosphorylation-dependent
partner switching and regulated complex formation.
- term:
id: GO:0019904
label: protein domain specific binding
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: Protein domain specific binding is supported by PICK1 PDZ-domain recognition of
receptor/cargo C-terminal motifs.
action: ACCEPT
reason: protein domain specific binding is supported as part of PICK1 PDZ/BAR scaffold,
membrane-remodeling, or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PDZ domain (protein interaction module):** In AMPAR biology, authoritative
review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly
to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain'
- term:
id: GO:0042802
label: identical protein binding
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: Identical protein binding is supported by BAR-domain homodimerization and
higher-order PICK1 assembly.
action: ACCEPT
reason: identical protein binding is supported as part of PICK1 PDZ/BAR scaffold,
membrane-remodeling, or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**BAR / N‑BAR domain (membrane remodeling module):** BAR domains are classically
crescent-shaped, lipid-binding modules involved in membrane curvature during trafficking.'
- term:
id: GO:0002092
label: positive regulation of receptor internalization
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: Positive regulation of receptor internalization is a core PICK1-supported process for
AMPAR GluA2 trafficking.
action: ACCEPT
reason: positive regulation of receptor internalization is supported as part of PICK1 PDZ/BAR
scaffold, membrane-remodeling, or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: In vivo evidence from mouse hippocampus (kainic acid model) supports a
mechanistic switch in which **GluA2 Ser880 phosphorylation** promotes dissociation from
GRIP1 and association with PICK1, driving AMPAR endocytosis/internalization;
PP2A-mediated dephosphorylation reverses this and disfavors PICK1 association
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- term:
id: GO:0021782
label: glial cell development
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: glial cell development is plausible as a context-specific PICK1 localization,
binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking
function.
action: KEEP_AS_NON_CORE
reason: glial cell development is secondary to PICK1 membrane protein trafficking and synaptic
receptor organization.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and
membrane-remodeling protein** that controls **membrane protein trafficking**, with the
strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3)
internalization/recycling and synaptic plasticity** through phosphorylation-dependent
partner switching and regulated complex formation.
- term:
id: GO:0034316
label: negative regulation of Arp2/3 complex-mediated actin nucleation
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: negative regulation of Arp2/3 complex-mediated actin nucleation is plausible as a
context-specific PICK1 localization, binding, or downstream process, but it is secondary to
the core PDZ/BAR receptor-trafficking function.
action: KEEP_AS_NON_CORE
reason: negative regulation of Arp2/3 complex-mediated actin nucleation is secondary to PICK1
membrane protein trafficking and synaptic receptor organization.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and
membrane-remodeling protein** that controls **membrane protein trafficking**, with the
strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3)
internalization/recycling and synaptic plasticity** through phosphorylation-dependent
partner switching and regulated complex formation.
- term:
id: GO:0036294
label: cellular response to decreased oxygen levels
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: cellular response to decreased oxygen levels is plausible as a context-specific PICK1
localization, binding, or downstream process, but it is secondary to the core PDZ/BAR
receptor-trafficking function.
action: KEEP_AS_NON_CORE
reason: cellular response to decreased oxygen levels is secondary to PICK1 membrane protein
trafficking and synaptic receptor organization.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and
membrane-remodeling protein** that controls **membrane protein trafficking**, with the
strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3)
internalization/recycling and synaptic plasticity** through phosphorylation-dependent
partner switching and regulated complex formation.
- term:
id: GO:0042149
label: cellular response to glucose starvation
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: cellular response to glucose starvation is plausible as a context-specific PICK1
localization, binding, or downstream process, but it is secondary to the core PDZ/BAR
receptor-trafficking function.
action: KEEP_AS_NON_CORE
reason: cellular response to glucose starvation is secondary to PICK1 membrane protein
trafficking and synaptic receptor organization.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and
membrane-remodeling protein** that controls **membrane protein trafficking**, with the
strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3)
internalization/recycling and synaptic plasticity** through phosphorylation-dependent
partner switching and regulated complex formation.
- term:
id: GO:0043005
label: neuron projection
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: Neuron projection localization is consistent with PICK1 function in pre- and
postsynaptic neuronal compartments.
action: ACCEPT
reason: neuron projection is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling,
or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: PICK1 is described as enriched in brain and localized to **pre- and
postsynaptic compartments**, consistent with its role in regulating synaptic receptor
trafficking
- term:
id: GO:0051015
label: actin filament binding
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: actin filament binding is plausible as a context-specific PICK1 localization,
binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking
function.
action: KEEP_AS_NON_CORE
reason: actin filament binding is secondary to PICK1 membrane protein trafficking and synaptic
receptor organization.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and
membrane-remodeling protein** that controls **membrane protein trafficking**, with the
strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3)
internalization/recycling and synaptic plasticity** through phosphorylation-dependent
partner switching and regulated complex formation.
- term:
id: GO:0060292
label: long-term synaptic depression
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: Long-term synaptic depression is supported as a synaptic plasticity context for
PICK1-mediated AMPAR internalization.
action: ACCEPT
reason: long-term synaptic depression is supported as part of PICK1 PDZ/BAR scaffold,
membrane-remodeling, or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: In vivo evidence from mouse hippocampus (kainic acid model) supports a
mechanistic switch in which **GluA2 Ser880 phosphorylation** promotes dissociation from
GRIP1 and association with PICK1, driving AMPAR endocytosis/internalization;
PP2A-mediated dephosphorylation reverses this and disfavors PICK1 association
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and
membrane-remodeling protein** that controls **membrane protein trafficking**, with the
strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3)
internalization/recycling and synaptic plasticity** through phosphorylation-dependent
partner switching and regulated complex formation.
- term:
id: GO:0071933
label: Arp2/3 complex binding
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: Arp2/3 complex binding is plausible as a context-specific PICK1 localization,
binding, or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking
function.
action: KEEP_AS_NON_CORE
reason: Arp2/3 complex binding is secondary to PICK1 membrane protein trafficking and synaptic
receptor organization.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and
membrane-remodeling protein** that controls **membrane protein trafficking**, with the
strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3)
internalization/recycling and synaptic plasticity** through phosphorylation-dependent
partner switching and regulated complex formation.
- term:
id: GO:0097061
label: dendritic spine organization
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: Dendritic spine organization is supported through PICK1-dependent AMPAR trafficking
and synaptic plasticity.
action: ACCEPT
reason: dendritic spine organization is supported as part of PICK1 PDZ/BAR scaffold,
membrane-remodeling, or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: PICK1 is described as enriched in brain and localized to **pre- and
postsynaptic compartments**, consistent with its role in regulating synaptic receptor
trafficking
- term:
id: GO:0097062
label: dendritic spine maintenance
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: Dendritic spine maintenance is supported by PICK1 roles in AMPAR trafficking and
synaptic plasticity.
action: ACCEPT
reason: dendritic spine maintenance is supported as part of PICK1 PDZ/BAR scaffold,
membrane-remodeling, or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: PICK1 is described as enriched in brain and localized to **pre- and
postsynaptic compartments**, consistent with its role in regulating synaptic receptor
trafficking
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-416639
review:
summary: Plasma membrane localization is supported by PICK1 roles in surface receptor
internalization and trafficking.
action: ACCEPT
reason: plasma membrane is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling,
or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: In vivo evidence from mouse hippocampus (kainic acid model) supports a
mechanistic switch in which **GluA2 Ser880 phosphorylation** promotes dissociation from
GRIP1 and association with PICK1, driving AMPAR endocytosis/internalization;
PP2A-mediated dephosphorylation reverses this and disfavors PICK1 association
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-416985
review:
summary: Plasma membrane localization is supported by PICK1 roles in surface receptor
internalization and trafficking.
action: ACCEPT
reason: plasma membrane is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling,
or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: In vivo evidence from mouse hippocampus (kainic acid model) supports a
mechanistic switch in which **GluA2 Ser880 phosphorylation** promotes dissociation from
GRIP1 and association with PICK1, driving AMPAR endocytosis/internalization;
PP2A-mediated dephosphorylation reverses this and disfavors PICK1 association
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-421007
review:
summary: Plasma membrane localization is supported by PICK1 roles in surface receptor
internalization and trafficking.
action: ACCEPT
reason: plasma membrane is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling,
or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: In vivo evidence from mouse hippocampus (kainic acid model) supports a
mechanistic switch in which **GluA2 Ser880 phosphorylation** promotes dissociation from
GRIP1 and association with PICK1, driving AMPAR endocytosis/internalization;
PP2A-mediated dephosphorylation reverses this and disfavors PICK1 association
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- term:
id: GO:0030666
label: endocytic vesicle membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-416639
review:
summary: Endocytic vesicle membrane localization is consistent with PICK1-mediated receptor
internalization/recycling.
action: ACCEPT
reason: endocytic vesicle membrane is supported as part of PICK1 PDZ/BAR scaffold,
membrane-remodeling, or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: In vivo evidence from mouse hippocampus (kainic acid model) supports a
mechanistic switch in which **GluA2 Ser880 phosphorylation** promotes dissociation from
GRIP1 and association with PICK1, driving AMPAR endocytosis/internalization;
PP2A-mediated dephosphorylation reverses this and disfavors PICK1 association
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- term:
id: GO:0030666
label: endocytic vesicle membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-421007
review:
summary: Endocytic vesicle membrane localization is consistent with PICK1-mediated receptor
internalization/recycling.
action: ACCEPT
reason: endocytic vesicle membrane is supported as part of PICK1 PDZ/BAR scaffold,
membrane-remodeling, or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: In vivo evidence from mouse hippocampus (kainic acid model) supports a
mechanistic switch in which **GluA2 Ser880 phosphorylation** promotes dissociation from
GRIP1 and association with PICK1, driving AMPAR endocytosis/internalization;
PP2A-mediated dephosphorylation reverses this and disfavors PICK1 association
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:16314870
review:
summary: cytoplasm is plausible as a context-specific PICK1 localization, binding, or
downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
action: KEEP_AS_NON_CORE
reason: cytoplasm is secondary to PICK1 membrane protein trafficking and synaptic receptor
organization.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: A 2024 Molecular Biology of the Cell study reports that in nonpolarized
cells PICK1 is typically **cytosolic**, but under **sodium arsenite** stress it
relocalizes to **perinuclear aggresomes**, identifying PICK1 as a stress-responsive
organizer of protein sequestration/aggregation compartments
- term:
id: GO:0005102
label: signaling receptor binding
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: Signaling receptor binding is supported by PICK1 PDZ-domain interactions with
receptor cargo such as AMPAR subunits.
action: ACCEPT
reason: signaling receptor binding is supported as part of PICK1 PDZ/BAR scaffold,
membrane-remodeling, or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PDZ domain (protein interaction module):** In AMPAR biology, authoritative
review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly
to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain'
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- term:
id: GO:0043113
label: receptor clustering
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: Receptor clustering is supported by PICK1 PDZ/BAR-dependent organization of synaptic
receptor complexes.
action: ACCEPT
reason: receptor clustering is supported as part of PICK1 PDZ/BAR scaffold,
membrane-remodeling, or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PDZ domain (protein interaction module):** In AMPAR biology, authoritative
review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly
to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain'
- term:
id: GO:0045202
label: synapse
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: Synapse localization is supported by PICK1 enrichment in pre- and postsynaptic
compartments.
action: ACCEPT
reason: synapse is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling, or
synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: PICK1 is described as enriched in brain and localized to **pre- and
postsynaptic compartments**, consistent with its role in regulating synaptic receptor
trafficking
- term:
id: GO:0005080
label: protein kinase C binding
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: Protein kinase C binding is supported by PICK1 identity as a PKC-alpha-binding
protein.
action: ACCEPT
reason: protein kinase C binding is supported as part of PICK1 PDZ/BAR scaffold,
membrane-remodeling, or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: PICK1 was originally cloned/recognized as a **PKCα-binding protein**, a
point reiterated in 2023 work on synaptic receptor regulation
- term:
id: GO:0048471
label: perinuclear region of cytoplasm
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: perinuclear region of cytoplasm is plausible as a context-specific PICK1
localization, binding, or downstream process, but it is secondary to the core PDZ/BAR
receptor-trafficking function.
action: KEEP_AS_NON_CORE
reason: perinuclear region of cytoplasm is secondary to PICK1 membrane protein trafficking and
synaptic receptor organization.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: A 2024 Molecular Biology of the Cell study reports that in nonpolarized
cells PICK1 is typically **cytosolic**, but under **sodium arsenite** stress it
relocalizes to **perinuclear aggresomes**, identifying PICK1 as a stress-responsive
organizer of protein sequestration/aggregation compartments
- term:
id: GO:0005794
label: Golgi apparatus
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: Golgi apparatus is plausible as a context-specific PICK1 localization, binding, or
downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
action: KEEP_AS_NON_CORE
reason: Golgi apparatus is secondary to PICK1 membrane protein trafficking and synaptic
receptor organization.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and
membrane-remodeling protein** that controls **membrane protein trafficking**, with the
strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3)
internalization/recycling and synaptic plasticity** through phosphorylation-dependent
partner switching and regulated complex formation.
- term:
id: GO:0006468
label: protein phosphorylation
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: PICK1 controls phosphorylation-dependent receptor partner switching as a scaffold,
but it does not catalyze protein phosphorylation.
action: REMOVE
reason: PICK1 is a phosphorylation-dependent scaffold/trafficking regulator, not a kinase.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: In vivo evidence from mouse hippocampus (kainic acid model) supports a
mechanistic switch in which **GluA2 Ser880 phosphorylation** promotes dissociation from
GRIP1 and association with PICK1, driving AMPAR endocytosis/internalization;
PP2A-mediated dephosphorylation reverses this and disfavors PICK1 association
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:11343649
review:
summary: cytoplasm is plausible as a context-specific PICK1 localization, binding, or
downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking function.
action: KEEP_AS_NON_CORE
reason: cytoplasm is secondary to PICK1 membrane protein trafficking and synaptic receptor
organization.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: A 2024 Molecular Biology of the Cell study reports that in nonpolarized
cells PICK1 is typically **cytosolic**, but under **sodium arsenite** stress it
relocalizes to **perinuclear aggresomes**, identifying PICK1 as a stress-responsive
organizer of protein sequestration/aggregation compartments
- term:
id: GO:0005886
label: plasma membrane
evidence_type: IDA
original_reference_id: PMID:11343649
review:
summary: Plasma membrane localization is supported by PICK1 roles in surface receptor
internalization and trafficking.
action: ACCEPT
reason: plasma membrane is supported as part of PICK1 PDZ/BAR scaffold, membrane-remodeling,
or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: In vivo evidence from mouse hippocampus (kainic acid model) supports a
mechanistic switch in which **GluA2 Ser880 phosphorylation** promotes dissociation from
GRIP1 and association with PICK1, driving AMPAR endocytosis/internalization;
PP2A-mediated dephosphorylation reverses this and disfavors PICK1 association
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- term:
id: GO:0015844
label: monoamine transport
evidence_type: IDA
original_reference_id: PMID:11343649
review:
summary: monoamine transport is plausible as a context-specific PICK1 localization, binding,
or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking
function.
action: KEEP_AS_NON_CORE
reason: monoamine transport is secondary to PICK1 membrane protein trafficking and synaptic
receptor organization.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and
membrane-remodeling protein** that controls **membrane protein trafficking**, with the
strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3)
internalization/recycling and synaptic plasticity** through phosphorylation-dependent
partner switching and regulated complex formation.
- term:
id: GO:0042734
label: presynaptic membrane
evidence_type: IDA
original_reference_id: PMID:11343649
review:
summary: presynaptic membrane is plausible as a context-specific PICK1 localization, binding,
or downstream process, but it is secondary to the core PDZ/BAR receptor-trafficking
function.
action: KEEP_AS_NON_CORE
reason: presynaptic membrane is secondary to PICK1 membrane protein trafficking and synaptic
receptor organization.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and
membrane-remodeling protein** that controls **membrane protein trafficking**, with the
strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3)
internalization/recycling and synaptic plasticity** through phosphorylation-dependent
partner switching and regulated complex formation.
- term:
id: GO:0045161
label: neuronal ion channel clustering
evidence_type: TAS
original_reference_id: PMID:11343649
review:
summary: Neuronal ion channel clustering is consistent with PICK1 synaptic receptor clustering
and trafficking roles.
action: ACCEPT
reason: neuronal ion channel clustering is supported as part of PICK1 PDZ/BAR scaffold,
membrane-remodeling, or synaptic receptor-trafficking function.
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface
availability of membrane proteins—especially AMPA-type glutamate receptors—by
coordinating protein complex assembly with membrane remodeling and endocytic/recycling
processes**
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: PICK1 is described as enriched in brain and localized to **pre- and
postsynaptic compartments**, consistent with its role in regulating synaptic receptor
trafficking
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO terms
findings: []
- id: GO_REF:0000024
title: Manual transfer of experimentally-verified manual GO annotation data to orthologs by
curator judgment of sequence similarity
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000043
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary
mapping, accompanied by conservative changes to GO terms applied by UniProt
findings: []
- id: GO_REF:0000052
title: Gene Ontology annotation based on curation of immunofluorescence data
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning models
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:11343649
title: Functional interaction between monoamine plasma membrane transporters and the synaptic
PDZ domain-containing protein PICK1.
findings: []
- id: PMID:11802773
title: Interaction of the synaptic protein PICK1 (protein interacting with C kinase 1) with the
non-voltage gated sodium channels BNC1 (brain Na+ channel 1) and ASIC (acid-sensing ion
channel).
findings: []
- id: PMID:16314870
title: 'Serine racemase binds to PICK1: potential relevance to schizophrenia.'
findings: []
- id: PMID:16713569
title: A protein-protein interaction network for human inherited ataxias and disorders of
Purkinje cell degeneration.
findings: []
- id: PMID:21653829
title: Protein interactome reveals converging molecular pathways among autism disorders.
findings: []
- id: PMID:26787460
title: Proteomic peptide phage display uncovers novel interactions of the PDZ1-2 supramodule of
syntenin.
findings: []
- id: PMID:28514442
title: Architecture of the human interactome defines protein communities and disease networks.
findings: []
- id: PMID:29768204
title: An Amphipathic Helix Directs Cellular Membrane Curvature Sensing and Function of the BAR
Domain Protein PICK1.
findings: []
- id: PMID:31413325
title: HENA, heterogeneous network-based data set for Alzheimer's disease.
findings: []
- id: PMID:32296183
title: A reference map of the human binary protein interactome.
findings: []
- id: PMID:32814053
title: Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers
Widespread Protein Aggregation in Affected Brains.
findings: []
- id: PMID:33961781
title: Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
findings: []
- id: PMID:36115835
title: Quantitative fragmentomics allow affinity mapping of interactomes.
findings: []
- id: PMID:37207277
title: Using brain cell-type-specific protein interactomes to interpret neurodevelopmental
genetic signals in schizophrenia.
findings: []
- id: Reactome:R-HSA-416639
title: Trafficking of GluR2-containing AMPA receptors to extrasynaptic sites
findings: []
- id: Reactome:R-HSA-416985
title: Trafficking of GluR2-containing AMPA receptors to synapse
findings: []
- id: Reactome:R-HSA-421007
title: Endocytosis of Ca impermeable AMPA receptors
findings: []
- id: file:human/PICK1/PICK1-deep-research-falcon.md
title: Falcon deep research synthesis for PICK1
findings: []
core_functions:
- description: PDZ-domain scaffold activity that selects receptor/cargo partners such as AMPAR
GluA2/GluA3 and regulates receptor internalization, clustering, and synaptic trafficking.
molecular_function:
id: GO:0019904
label: protein domain specific binding
directly_involved_in:
- id: GO:0002092
label: positive regulation of receptor internalization
- id: GO:0043113
label: receptor clustering
- id: GO:0006886
label: intracellular protein transport
- id: GO:0060292
label: long-term synaptic depression
locations:
- id: GO:0014069
label: postsynaptic density
- id: GO:0045202
label: synapse
- id: GO:0005886
label: plasma membrane
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PDZ domain (protein interaction module):** In AMPAR biology, authoritative
review evidence states that the **GluA2 C-terminus** contains a PDZ ligand that binds directly
to **PICK1** (and GRIP1), and that PICK1 binds GluA2 via its PDZ domain'
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: In vivo evidence from mouse hippocampus (kainic acid model) supports a
mechanistic switch in which **GluA2 Ser880 phosphorylation** promotes dissociation from
GRIP1 and association with PICK1, driving AMPAR endocytosis/internalization; PP2A-mediated
dephosphorylation reverses this and disfavors PICK1 association
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Human **PICK1 (Q9NRD5)** is best annotated as a **PDZ/BAR scaffolding and
membrane-remodeling protein** that controls **membrane protein trafficking**, with the
strongest 2023–2024 evidence supporting roles in **AMPAR (GluA2/3)
internalization/recycling and synaptic plasticity** through phosphorylation-dependent
partner switching and regulated complex formation.
- description: BAR/N-BAR membrane binding and curvature-sensing activity that couples PICK1 cargo
complexes to membrane remodeling and compartmentalized trafficking.
molecular_function:
id: GO:0140090
label: membrane curvature sensor activity
directly_involved_in:
- id: GO:0006886
label: intracellular protein transport
- id: GO:0002092
label: positive regulation of receptor internalization
locations:
- id: GO:0030666
label: endocytic vesicle membrane
supported_by:
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**PICK1 is a dual-domain scaffolding/adaptor protein** that couples (i) **PDZ-domain–mediated
binding** to C-terminal motifs on cargo proteins with (ii) **BAR/N‑BAR–mediated lipid/membrane
binding and remodeling**, enabling regulation of membrane protein trafficking and compartmentalization'
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: '**BAR / N‑BAR domain (membrane remodeling module):** BAR domains are classically
crescent-shaped, lipid-binding modules involved in membrane curvature during trafficking.'
- reference_id: file:human/PICK1/PICK1-deep-research-falcon.md
supporting_text: Across the recent literature, PICK1’s primary molecular role is best
described as a **PDZ/BAR scaffold that regulates the trafficking and surface availability
of membrane proteins—especially AMPA-type glutamate receptors—by coordinating protein
complex assembly with membrane remodeling and endocytic/recycling processes**
proposed_new_terms: []
suggested_questions: []
suggested_experiments: []