Protein O-mannosyltransferase 1, glycosyltransferase (EC 2.4.1.109) that catalyzes the first committed step in protein O-mannose glycan biosynthesis by transferring mannose from dolichol-phosphate-mannose to serine/threonine hydroxyl groups on target proteins. Forms obligate heteromeric complex with POMT2 in 1:1 stoichiometry - individually neither subunit has enzymatic activity, only the POMT1/POMT2 complex is functional. ER-resident integral membrane protein with ~10 transmembrane helices and luminal catalytic domains facing ER lumen. Belongs to GT-C superfamily of glycosyltransferases with conserved acidic residues in first luminal loop forming active site that binds dolichol-P-mannose. Contains MIR domains and TPR repeats predicted to mediate protein substrate recognition; no short consensus sequence motif identified - substrate recognition depends on folded protein context and structural features rather than linear sequence. Primary physiological substrate: Ξ±-dystroglycan (Ξ±-DG), an ECM receptor glycoprotein requiring O-mannose glycan (matriglycan) to bind laminin, agrin, and perlecan. POMT1/2 initiate attachment of mannose on specific Thr residues (e.g. Thr-317, Thr-379) which primes sites for elongation into core M1/M2/M3 glycan structures - subsequent enzymes add GalNAc, xylose, ribitol-phosphate, and ultimately LARGE1 polymerizes matriglycan repeating disaccharide that directly binds ECM ligands. Without initial mannose from POMT1, entire carbohydrate scaffold cannot be built. Loss of POMT1 causes hypoglycosylation of Ξ±-dystroglycan, disrupting muscle-ECM anchorage. Other substrates: receptor protein tyrosine phosphatases (RPTPΞΆ/phosphacan) carrying O-mannose glycans with HNK-1 epitopes in neural development, KIAA1549, PTP69D in fly for sensory axon guidance. POMT1-mediated O-mannosylation extends to cell-surface receptors in neural circuit formation. Critical for basement membrane assembly: Pomt1 knockout mice are embryonically lethal due to failure of Reichert's membrane formation (non-functional dystroglycan). Dystrophin-glycoprotein complex: Ξ±-dystroglycan (heavily O-mannosylated) binds extracellular laminin while Ξ²-dystroglycan links to cytoskeleton via dystrophin, stabilizing muscle fibers during contraction. Mutations cause Walker-Warburg syndrome (WWS, ~20% of cases), severe congenital muscular dystrophy with brain malformations (cobblestone lissencephaly, hydrocephalus), eye defects (retinal dysplasia), early lethality; also limb-girdle muscular dystrophy 2K (LGMD2K) with later-onset milder muscle weakness but often intellectual disability. POMT1 mutations tend to have CNS involvement even in milder forms. One of three mammalian protein O-mannosyltransferase families (others: TMTC1-4 for cadherins, TMEM260 for plexin/RON/MET) - POMT1/2 uniquely responsible for dystroglycan-type pathways, occupying non-redundant niche. Acts early in secretory pathway modifying nascent polypeptides in ER lumen before Golgi trafficking. Essential for muscle fiber integrity, brain cortical layering, eye development, peripheral nerve myelination. Substrate specificity is broad in function but narrow in occurrence - targets select set of large extracellular/membrane proteins requiring O-mannose for function.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
| GO:0005783 endoplasmic reticulum | IBA GO_REF:0000033 | ACCEPT | Summary: Endoplasmic reticulum from phylogeny. Reason: Core localization. Supporting Evidence: file:human/POMT1/POMT1-deep-research-perplexity.md See deep research file for comprehensive analysis |
| GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity | IBA GO_REF:0000033 | ACCEPT | Summary: O-mannosyltransferase activity - core enzymatic function. Reason: Core catalytic activity. Supporting Evidence: file:human/POMT1/POMT1-deep-research-falcon.md human POMT1 (Q9Y6A1) is a multi-pass ER membrane glycosyltransferase that functions with **POMT2** as the canonical **protein O-mannosyltransferase** initiating O-mannosylation on selected substrates, most notably **Ξ±-dystroglycan (Ξ±-DG)** |
| GO:0035269 protein O-linked glycosylation via mannose | IBA GO_REF:0000033 | ACCEPT | Summary: Protein O-linked glycosylation via mannose - most specific term. Reason: Core function. Supporting Evidence: PMID:38851451 Biosynthesis of O-Man is initiated in the endoplasmic reticulum (ER) lumen by integral transmembrane GT-CA enzymes (5, 6, 7) that utilize lipid-linked dolichol phosphate mannose as donor substrate |
| GO:0000030 mannosyltransferase activity | IEA GO_REF:0000002 | ACCEPT | Summary: Mannosyltransferase activity from InterPro. Reason: Core function. |
| GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity | IEA GO_REF:0000120 | ACCEPT | Summary: O-mannosyltransferase activity from family assignment. Core enzymatic function. Reason: Core catalytic activity - POMT1 transfers mannose from dolichol-P-mannose to proteins. |
| GO:0005789 endoplasmic reticulum membrane | IEA GO_REF:0000044 | ACCEPT | Summary: ER membrane from subcellular location. Reason: Duplicate. |
| GO:0006493 protein O-linked glycosylation | IEA GO_REF:0000002 | ACCEPT | Summary: Protein O-linked glycosylation from keywords. Reason: Duplicate of IBA annotation. |
| GO:0016020 membrane | IEA GO_REF:0000002 | ACCEPT | Summary: Membrane from keywords. Reason: General membrane localization. |
| GO:0016740 transferase activity | IEA GO_REF:0000043 | ACCEPT | Summary: Transferase activity from keywords. Reason: General enzyme class. |
| GO:0016757 glycosyltransferase activity | IEA GO_REF:0000043 | ACCEPT | Summary: Glycosyltransferase activity from InterPro domain. GT-C superfamily. Reason: Broad classification of core function. |
| GO:0046872 metal ion binding | IEA GO_REF:0000043 | ACCEPT | Summary: Metal ion binding from keywords. May require divalent cations. Reason: Many glycosyltransferases use metal cofactors. |
| GO:0001669 acrosomal vesicle | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Acrosome assembly from Ensembl orthology. Reason: Context-specific, not core. |
| GO:0016529 sarcoplasmic reticulum | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Sarcoplasmic reticulum from Ensembl. POMT1 in ER not SR. Reason: Incorrect organelle. |
| GO:0030198 extracellular matrix organization | IEA GO_REF:0000107 | ACCEPT | Summary: Extracellular matrix organization via dystroglycan. Reason: Downstream consequence. Supporting Evidence: PMID:38851451 Functional O-Man glycosylation of Ξ±-DG is required for interactions with extracellular matrix (ECM) components, including laminin, agrin, and perlecan, which are anchored to the dystrophin-associated glycoprotein complex and the actin cytoskeleton through a complex O-Man polysaccharide known as matriglycan |
| GO:0031502 dolichyl-phosphate-mannose-protein mannosyltransferase complex | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Dolichyl-diphosphooligosaccharide-protein glycosyltransferase complex. Reason: Related but not exact complex type. |
| GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity | TAS Reactome:R-HSA-9816277 | ACCEPT | Summary: O-mannosyltransferase activity - core enzymatic function. Reason: Core catalytic activity. |
| GO:0031502 dolichyl-phosphate-mannose-protein mannosyltransferase complex | IPI PMID:16698797 Physical and functional association of human protein O-manno... | KEEP AS NON CORE | Summary: Dolichyl-diphosphooligosaccharide-protein glycosyltransferase complex. Reason: Related but not exact complex type. Supporting Evidence: PMID:16698797 2006 May 12. Physical and functional association of human protein O-mannosyltransferases 1 and 2. |
| GO:0035269 protein O-linked glycosylation via mannose | IDA PMID:16698797 Physical and functional association of human protein O-manno... | ACCEPT | Summary: Protein O-linked glycosylation via mannose - most specific term. Reason: Core function. Supporting Evidence: PMID:16698797 2006 May 12. Physical and functional association of human protein O-mannosyltransferases 1 and 2. |
| GO:0000030 mannosyltransferase activity | IMP PMID:28512129 Mammalian O-mannosylation of cadherins and plexins is indepe... | ACCEPT | Summary: Mannosyltransferase activity from InterPro. Reason: Core function. Supporting Evidence: PMID:28512129 Epub 2017 May 16. Mammalian O-mannosylation of cadherins and plexins is independent of protein O-mannosyltransferases 1 and 2. |
| GO:0035269 protein O-linked glycosylation via mannose | IMP PMID:28512129 Mammalian O-mannosylation of cadherins and plexins is indepe... | ACCEPT | Summary: Protein O-linked glycosylation via mannose - most specific term. Reason: Core function. Supporting Evidence: PMID:28512129 Epub 2017 May 16. Mammalian O-mannosylation of cadherins and plexins is independent of protein O-mannosyltransferases 1 and 2. |
| GO:0005789 endoplasmic reticulum membrane | TAS Reactome:R-HSA-5615556 | ACCEPT | Summary: ER membrane. Reason: Core localization. |
| GO:0005789 endoplasmic reticulum membrane | TAS Reactome:R-HSA-5615604 | ACCEPT | Summary: ER membrane. Reason: Core localization. |
| GO:0005789 endoplasmic reticulum membrane | TAS Reactome:R-HSA-5615637 | ACCEPT | Summary: ER membrane. Reason: Core localization. |
| GO:0000030 mannosyltransferase activity | TAS PMID:10366449 Identification of a human homolog of the Drosophila rotated ... | ACCEPT | Summary: Mannosyltransferase activity from InterPro. Reason: Core function. Supporting Evidence: PMID:10366449 Identification of a human homolog of the Drosophila rotated abdomen gene (POMT1) encoding a putative protein O-mannosyl-transferase, and assignment to human chromosome 9q34.1. |
| GO:0005783 endoplasmic reticulum | TAS PMID:10366449 Identification of a human homolog of the Drosophila rotated ... | ACCEPT | Summary: Endoplasmic reticulum. Reason: Core localization. Supporting Evidence: PMID:10366449 Identification of a human homolog of the Drosophila rotated abdomen gene (POMT1) encoding a putative protein O-mannosyl-transferase, and assignment to human chromosome 9q34.1. |
| GO:0006493 protein O-linked glycosylation | TAS PMID:10366449 Identification of a human homolog of the Drosophila rotated ... | ACCEPT | Summary: Protein O-linked glycosylation. Reason: Core process. Supporting Evidence: PMID:10366449 Identification of a human homolog of the Drosophila rotated abdomen gene (POMT1) encoding a putative protein O-mannosyl-transferase, and assignment to human chromosome 9q34.1. |
| GO:0016020 membrane | TAS PMID:10366449 Identification of a human homolog of the Drosophila rotated ... | ACCEPT | Summary: Membrane. Reason: General localization. Supporting Evidence: PMID:10366449 Identification of a human homolog of the Drosophila rotated abdomen gene (POMT1) encoding a putative protein O-mannosyl-transferase, and assignment to human chromosome 9q34.1. |
| GO:0005789 endoplasmic reticulum membrane | IDA PMID:14699049 Demonstration of mammalian protein O-mannosyltransferase act... | ACCEPT | Summary: ER membrane. Reason: Core localization. Supporting Evidence: PMID:14699049 Demonstration of mammalian protein O-mannosyltransferase activity: coexpression of POMT1 and POMT2 required for enzymatic activity. file:human/POMT1/POMT1-deep-research-falcon.md Multiple sources explicitly place POMT1 function in the **ER** (sheikh2017recentadvancementsin pages 1-5, sheikh2017recentadvancementsin pages 37-41, lommel2010correlationofenzyme pages 1-3). Experimentally, POMT1 and POMT2 are detected in microsomal membrane fractions used for in vitro activity assays |
| GO:0007155 cell adhesion | NAS | NEW | Summary: Added to align core_functions with existing annotations. Reason: Core function term not present in existing_annotations. Supporting Evidence: file:human/POMT1/POMT1-uniprot.txt POMT1 with POMT2 initiates O-mannose glycan on Ξ±-dystroglycan. Mutations cause Walker-Warburg syndrome due to failed dystroglycan glycosylation and loss of ECM binding. PMID:38272461 POMT1 is a glycosyltransferase responsible for the attachment of a functional glycan mediating interactions between the transmembrane glycoprotein dystroglycan and its binding partners in the extracellular matrix (ECM) |
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