POMT1

UniProt ID: Q9Y6A1
Organism: Homo sapiens
Review Status: COMPLETE
Aliases:
Protein O-mannosyl-transferase 1 Dolichyl-phosphate-mannose--protein mannosyltransferase 1
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Gene Description

Protein O-mannosyltransferase 1, glycosyltransferase (EC 2.4.1.109) that catalyzes the first committed step in protein O-mannose glycan biosynthesis by transferring mannose from dolichol-phosphate-mannose to serine/threonine hydroxyl groups on target proteins. Forms obligate heteromeric complex with POMT2 in 1:1 stoichiometry - individually neither subunit has enzymatic activity, only the POMT1/POMT2 complex is functional. ER-resident integral membrane protein with ~10 transmembrane helices and luminal catalytic domains facing ER lumen. Belongs to GT-C superfamily of glycosyltransferases with conserved acidic residues in first luminal loop forming active site that binds dolichol-P-mannose. Contains MIR domains and TPR repeats predicted to mediate protein substrate recognition; no short consensus sequence motif identified - substrate recognition depends on folded protein context and structural features rather than linear sequence. Primary physiological substrate: Ξ±-dystroglycan (Ξ±-DG), an ECM receptor glycoprotein requiring O-mannose glycan (matriglycan) to bind laminin, agrin, and perlecan. POMT1/2 initiate attachment of mannose on specific Thr residues (e.g. Thr-317, Thr-379) which primes sites for elongation into core M1/M2/M3 glycan structures - subsequent enzymes add GalNAc, xylose, ribitol-phosphate, and ultimately LARGE1 polymerizes matriglycan repeating disaccharide that directly binds ECM ligands. Without initial mannose from POMT1, entire carbohydrate scaffold cannot be built. Loss of POMT1 causes hypoglycosylation of Ξ±-dystroglycan, disrupting muscle-ECM anchorage. Other substrates: receptor protein tyrosine phosphatases (RPTPΞΆ/phosphacan) carrying O-mannose glycans with HNK-1 epitopes in neural development, KIAA1549, PTP69D in fly for sensory axon guidance. POMT1-mediated O-mannosylation extends to cell-surface receptors in neural circuit formation. Critical for basement membrane assembly: Pomt1 knockout mice are embryonically lethal due to failure of Reichert's membrane formation (non-functional dystroglycan). Dystrophin-glycoprotein complex: Ξ±-dystroglycan (heavily O-mannosylated) binds extracellular laminin while Ξ²-dystroglycan links to cytoskeleton via dystrophin, stabilizing muscle fibers during contraction. Mutations cause Walker-Warburg syndrome (WWS, ~20% of cases), severe congenital muscular dystrophy with brain malformations (cobblestone lissencephaly, hydrocephalus), eye defects (retinal dysplasia), early lethality; also limb-girdle muscular dystrophy 2K (LGMD2K) with later-onset milder muscle weakness but often intellectual disability. POMT1 mutations tend to have CNS involvement even in milder forms. One of three mammalian protein O-mannosyltransferase families (others: TMTC1-4 for cadherins, TMEM260 for plexin/RON/MET) - POMT1/2 uniquely responsible for dystroglycan-type pathways, occupying non-redundant niche. Acts early in secretory pathway modifying nascent polypeptides in ER lumen before Golgi trafficking. Essential for muscle fiber integrity, brain cortical layering, eye development, peripheral nerve myelination. Substrate specificity is broad in function but narrow in occurrence - targets select set of large extracellular/membrane proteins requiring O-mannose for function.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0005783 endoplasmic reticulum
IBA
GO_REF:0000033
ACCEPT
Summary: Endoplasmic reticulum from phylogeny.
Reason: Core localization.
Supporting Evidence:
file:human/POMT1/POMT1-deep-research-perplexity.md
See deep research file for comprehensive analysis
GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity
IBA
GO_REF:0000033
ACCEPT
Summary: O-mannosyltransferase activity - core enzymatic function.
Reason: Core catalytic activity.
Supporting Evidence:
file:human/POMT1/POMT1-deep-research-falcon.md
human POMT1 (Q9Y6A1) is a multi-pass ER membrane glycosyltransferase that functions with **POMT2** as the canonical **protein O-mannosyltransferase** initiating O-mannosylation on selected substrates, most notably **Ξ±-dystroglycan (Ξ±-DG)**
GO:0035269 protein O-linked glycosylation via mannose
IBA
GO_REF:0000033
ACCEPT
Summary: Protein O-linked glycosylation via mannose - most specific term.
Reason: Core function.
Supporting Evidence:
PMID:38851451
Biosynthesis of O-Man is initiated in the endoplasmic reticulum (ER) lumen by integral transmembrane GT-CA enzymes (5, 6, 7) that utilize lipid-linked dolichol phosphate mannose as donor substrate
GO:0000030 mannosyltransferase activity
IEA
GO_REF:0000002
ACCEPT
Summary: Mannosyltransferase activity from InterPro.
Reason: Core function.
GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity
IEA
GO_REF:0000120
ACCEPT
Summary: O-mannosyltransferase activity from family assignment. Core enzymatic function.
Reason: Core catalytic activity - POMT1 transfers mannose from dolichol-P-mannose to proteins.
GO:0005789 endoplasmic reticulum membrane
IEA
GO_REF:0000044
ACCEPT
Summary: ER membrane from subcellular location.
Reason: Duplicate.
GO:0006493 protein O-linked glycosylation
IEA
GO_REF:0000002
ACCEPT
Summary: Protein O-linked glycosylation from keywords.
Reason: Duplicate of IBA annotation.
GO:0016020 membrane
IEA
GO_REF:0000002
ACCEPT
Summary: Membrane from keywords.
Reason: General membrane localization.
GO:0016740 transferase activity
IEA
GO_REF:0000043
ACCEPT
Summary: Transferase activity from keywords.
Reason: General enzyme class.
GO:0016757 glycosyltransferase activity
IEA
GO_REF:0000043
ACCEPT
Summary: Glycosyltransferase activity from InterPro domain. GT-C superfamily.
Reason: Broad classification of core function.
GO:0046872 metal ion binding
IEA
GO_REF:0000043
ACCEPT
Summary: Metal ion binding from keywords. May require divalent cations.
Reason: Many glycosyltransferases use metal cofactors.
GO:0001669 acrosomal vesicle
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: Acrosome assembly from Ensembl orthology.
Reason: Context-specific, not core.
GO:0016529 sarcoplasmic reticulum
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: Sarcoplasmic reticulum from Ensembl. POMT1 in ER not SR.
Reason: Incorrect organelle.
GO:0030198 extracellular matrix organization
IEA
GO_REF:0000107
ACCEPT
Summary: Extracellular matrix organization via dystroglycan.
Reason: Downstream consequence.
Supporting Evidence:
PMID:38851451
Functional O-Man glycosylation of Ξ±-DG is required for interactions with extracellular matrix (ECM) components, including laminin, agrin, and perlecan, which are anchored to the dystrophin-associated glycoprotein complex and the actin cytoskeleton through a complex O-Man polysaccharide known as matriglycan
GO:0031502 dolichyl-phosphate-mannose-protein mannosyltransferase complex
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: Dolichyl-diphosphooligosaccharide-protein glycosyltransferase complex.
Reason: Related but not exact complex type.
GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity
TAS
Reactome:R-HSA-9816277
ACCEPT
Summary: O-mannosyltransferase activity - core enzymatic function.
Reason: Core catalytic activity.
GO:0031502 dolichyl-phosphate-mannose-protein mannosyltransferase complex
IPI
PMID:16698797
Physical and functional association of human protein O-manno...
KEEP AS NON CORE
Summary: Dolichyl-diphosphooligosaccharide-protein glycosyltransferase complex.
Reason: Related but not exact complex type.
Supporting Evidence:
PMID:16698797
2006 May 12. Physical and functional association of human protein O-mannosyltransferases 1 and 2.
GO:0035269 protein O-linked glycosylation via mannose
IDA
PMID:16698797
Physical and functional association of human protein O-manno...
ACCEPT
Summary: Protein O-linked glycosylation via mannose - most specific term.
Reason: Core function.
Supporting Evidence:
PMID:16698797
2006 May 12. Physical and functional association of human protein O-mannosyltransferases 1 and 2.
GO:0000030 mannosyltransferase activity
IMP
PMID:28512129
Mammalian O-mannosylation of cadherins and plexins is indepe...
ACCEPT
Summary: Mannosyltransferase activity from InterPro.
Reason: Core function.
Supporting Evidence:
PMID:28512129
Epub 2017 May 16. Mammalian O-mannosylation of cadherins and plexins is independent of protein O-mannosyltransferases 1 and 2.
GO:0035269 protein O-linked glycosylation via mannose
IMP
PMID:28512129
Mammalian O-mannosylation of cadherins and plexins is indepe...
ACCEPT
Summary: Protein O-linked glycosylation via mannose - most specific term.
Reason: Core function.
Supporting Evidence:
PMID:28512129
Epub 2017 May 16. Mammalian O-mannosylation of cadherins and plexins is independent of protein O-mannosyltransferases 1 and 2.
GO:0005789 endoplasmic reticulum membrane
TAS
Reactome:R-HSA-5615556
ACCEPT
Summary: ER membrane.
Reason: Core localization.
GO:0005789 endoplasmic reticulum membrane
TAS
Reactome:R-HSA-5615604
ACCEPT
Summary: ER membrane.
Reason: Core localization.
GO:0005789 endoplasmic reticulum membrane
TAS
Reactome:R-HSA-5615637
ACCEPT
Summary: ER membrane.
Reason: Core localization.
GO:0000030 mannosyltransferase activity
TAS
PMID:10366449
Identification of a human homolog of the Drosophila rotated ...
ACCEPT
Summary: Mannosyltransferase activity from InterPro.
Reason: Core function.
Supporting Evidence:
PMID:10366449
Identification of a human homolog of the Drosophila rotated abdomen gene (POMT1) encoding a putative protein O-mannosyl-transferase, and assignment to human chromosome 9q34.1.
GO:0005783 endoplasmic reticulum
TAS
PMID:10366449
Identification of a human homolog of the Drosophila rotated ...
ACCEPT
Summary: Endoplasmic reticulum.
Reason: Core localization.
Supporting Evidence:
PMID:10366449
Identification of a human homolog of the Drosophila rotated abdomen gene (POMT1) encoding a putative protein O-mannosyl-transferase, and assignment to human chromosome 9q34.1.
GO:0006493 protein O-linked glycosylation
TAS
PMID:10366449
Identification of a human homolog of the Drosophila rotated ...
ACCEPT
Summary: Protein O-linked glycosylation.
Reason: Core process.
Supporting Evidence:
PMID:10366449
Identification of a human homolog of the Drosophila rotated abdomen gene (POMT1) encoding a putative protein O-mannosyl-transferase, and assignment to human chromosome 9q34.1.
GO:0016020 membrane
TAS
PMID:10366449
Identification of a human homolog of the Drosophila rotated ...
ACCEPT
Summary: Membrane.
Reason: General localization.
Supporting Evidence:
PMID:10366449
Identification of a human homolog of the Drosophila rotated abdomen gene (POMT1) encoding a putative protein O-mannosyl-transferase, and assignment to human chromosome 9q34.1.
GO:0005789 endoplasmic reticulum membrane
IDA
PMID:14699049
Demonstration of mammalian protein O-mannosyltransferase act...
ACCEPT
Summary: ER membrane.
Reason: Core localization.
Supporting Evidence:
PMID:14699049
Demonstration of mammalian protein O-mannosyltransferase activity: coexpression of POMT1 and POMT2 required for enzymatic activity.
file:human/POMT1/POMT1-deep-research-falcon.md
Multiple sources explicitly place POMT1 function in the **ER** (sheikh2017recentadvancementsin pages 1-5, sheikh2017recentadvancementsin pages 37-41, lommel2010correlationofenzyme pages 1-3). Experimentally, POMT1 and POMT2 are detected in microsomal membrane fractions used for in vitro activity assays
GO:0007155 cell adhesion
NAS NEW
Summary: Added to align core_functions with existing annotations.
Reason: Core function term not present in existing_annotations.
Supporting Evidence:
file:human/POMT1/POMT1-uniprot.txt
POMT1 with POMT2 initiates O-mannose glycan on Ξ±-dystroglycan. Mutations cause Walker-Warburg syndrome due to failed dystroglycan glycosylation and loss of ECM binding.
PMID:38272461
POMT1 is a glycosyltransferase responsible for the attachment of a functional glycan mediating interactions between the transmembrane glycoprotein dystroglycan and its binding partners in the extracellular matrix (ECM)

Core Functions

Catalyzing transfer of mannose from dolichol-phosphate-mannose donor to serine/threonine residues on protein substrates in ER lumen, as obligate heteromeric complex with POMT2. First committed step in O-mannose glycan biosynthesis - without this mannose, downstream glycan assembly cannot occur. Primary substrate Ξ±-dystroglycan requires this modification for ECM binding.

Supporting Evidence:
  • file:human/POMT1/POMT1-uniprot.txt
    POMT1 with POMT2 initiates O-mannose glycan on Ξ±-dystroglycan. Mutations cause Walker-Warburg syndrome due to failed dystroglycan glycosylation and loss of ECM binding.

References

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Deep Research

Falcon

(POMT1-deep-research-falcon.md)

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OpenAI

(POMT1-deep-research-openai.md)

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Perplexity

(POMT1-deep-research-perplexity-lite.md)

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Perplexity

(POMT1-deep-research-perplexity.md)

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