PRG2

UniProt ID: P13727
Organism: Homo sapiens
Review Status: COMPLETE
Aliases:
Eosinophil major basic protein 1 MBP-1 MBP BMPG Bone marrow proteoglycan Pregnancy-associated major basic protein
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Gene Description

Eosinophil major basic protein 1 (MBP-1), a highly cationic protein (~13.8 kDa, pI ~11.4) that is the predominant constituent of the crystalline core in eosinophil secondary granules. Synthesized as a 222-amino acid precursor with an acidic, heavily glycosylated prosegment (~9 kDa) that neutralizes the toxicity of the basic mature domain during biosynthesis. The prosegment contains N-linked, O-linked, and glycosaminoglycan chains (hence "proteoglycan 2"), raising precursor mass to 30-50 kDa. Upon maturation, the prosegment is proteolytically cleaved in the Golgi/secretory granule, yielding the active 117-residue MBP that is stored in paracrystalline arrays within granules. Structurally, MBP adopts a C-type lectin-like fold but lacks Ca2+-binding sites; instead presents a highly cationic surface for binding sulfated polysaccharides like heparin and heparan sulfate. Primary function: cytotoxic effector in antiparasitic defense - directly damages helminth larvae membranes and cuticles (experimental knockout mice show impaired killing of Strongyloides and filarial worms). Also exhibits broad antimicrobial activity against bacteria and fungi via membrane disruption. Immunomodulatory roles: triggers degranulation of mast cells and basophils (histamine release), activates neutrophils (superoxide production) and platelets. Toxic to host cells - causes epithelial damage and denudation in allergic diseases. In asthma, acts as allosteric antagonist of M2 muscarinic acetylcholine receptors on parasympathetic neurons, disabling inhibitory feedback and causing bronchospasm and airway hyperresponsiveness. Inhibits heparanase (first known endogenous heparanase inhibitor). In chronic settings, induces TGF-Ξ² and MMP-1 expression, promoting fibrosis and tissue remodeling. Dual biology: the proMBP form is abundantly expressed in placenta during pregnancy and secreted into maternal circulation, where it forms disulfide-linked 1:1 complexes with PAPP-A (pregnancy-associated plasma protein A), inhibiting this metalloprotease's cleavage of IGFBPs and thereby modulating IGF signaling for fetal growth. ProMBP also binds angiotensinogen and complement C3dg. The PAPP-A/proMBP complex is a clinical biomarker in first-trimester Down syndrome screening. ProMBP is non-toxic (acidic prosegment renders it inert), contrasting with the highly cytotoxic mature MBP released from eosinophils. MBP levels correlate with disease severity in asthma, eosinophilic esophagitis, and other eosinophil-driven conditions.

Proposed New Ontology Terms

cytotoxic effector activity

Definition: The activity of directly killing or damaging target cells or organisms through membrane permeabilization or disruption, particularly via cationic charge-based interactions, as exhibited by antimicrobial peptides and granule proteins.

Justification: MBP's primary function is direct killing of parasites and microbes via membrane permeabilization. Current GO lacks specific term for this cationic antimicrobial peptide-like activity. Knockout mice show impaired parasite killing; purified MBP kills helminths, bacteria, fungi, and mammalian cells via membrane disruption.

Parent term: molecular_function

M2 muscarinic acetylcholine receptor antagonist activity

Definition: The activity of binding to M2 muscarinic acetylcholine receptors and blocking their inhibitory function, thereby preventing feedback inhibition of acetylcholine release from parasympathetic neurons.

Justification: MBP's allosteric antagonism of M2 receptors on airway nerves is a key mechanism in asthma pathophysiology, but lacks specific GO annotation. MBP binds M2 receptors, blocks inhibitory feedback, causes unrestrained acetylcholine release and bronchospasm. Heparin neutralization of MBP prevents this effect.

Parent term: neurotransmitter receptor activity

Existing Annotations Review

GO Term Evidence Action Reason
GO:0002376 immune system process
IEA
GO_REF:0000043
ACCEPT
Summary: Electronic annotation for immune system process from UniProt keywords. MBP is central to eosinophil-mediated immunity.
Reason: Core biological process - MBP is key effector in antiparasitic and antimicrobial defense.
Supporting Evidence:
file:human/PRG2/PRG2-deep-research-perplexity-lite.md
See deep research file for comprehensive analysis
GO:0005576 extracellular region
IEA
GO_REF:0000044
ACCEPT
Summary: Extracellular region from UniProt subcellular location. MBP is released from eosinophils and acts extracellularly.
Reason: Core localization - MBP functions in extracellular space after degranulation.
GO:0006955 immune response
IEA
GO_REF:0000002
ACCEPT
Summary: Electronic annotation for immune response from InterPro domain. MBP kills parasites and microbes as part of innate immunity.
Reason: Core function in immune defense, experimentally validated in helminth killing.
Supporting Evidence:
PMID:38885626
Eosinophils have numerous roles in type 2 inflammation depending on their activation states in the blood and airway or after encounter with inflammatory mediators.
file:human/PRG2/PRG2-deep-research-falcon.md
Soluble MBP-1 is described as **cytotoxic** and **membrane-disruptive**, whereas **proMBP-1** and **isolated nanocrystalline cores** of MBP-1 are reported as **nontoxic**, indicating that precursor neutralization plus crystallization are key protective strategies inside the eosinophil.
GO:0008201 heparin binding
IEA
GO_REF:0000043
ACCEPT
Summary: Heparin binding from UniProt keywords. MBP strongly binds heparin and heparan sulfate via cationic surface.
Reason: Core molecular function - crystal structure shows heparin-binding site, physiologically relevant for tissue interactions.
Supporting Evidence:
file:human/PRG2/PRG2-deep-research-falcon.md
MBP-1 retains a **CTL-like carbohydrate-binding region**, but the in situ granule form lacks the canonical acidic residues for **Ca2+-dependent carbohydrate binding**, explaining loss of canonical lectin behavior. By contrast, purified/recrystallized MBP-1 can bind **sulfated sugars such as heparin**.
GO:0030133 transport vesicle
IEA
GO_REF:0000044
ACCEPT
Summary: Transport vesicle from UniProt subcellular location. MBP is in secretory granules.
Reason: Accurate - MBP is stored in eosinophil secondary granules (transport/secretory vesicles).
Supporting Evidence:
file:human/PRG2/PRG2-deep-research-falcon.md
MBP-1 forms the **dense nanocrystalline core** of **eosinophil secretory granules (SGr)** and is stored as **nanocrystals** in resting cells.
GO:0030246 carbohydrate binding
IEA
GO_REF:0000043
ACCEPT
Summary: Carbohydrate binding from UniProt keywords. MBP has C-type lectin-like fold and binds sulfated polysaccharides.
Reason: Structural feature - lectin-like fold binds sulfated carbohydrates.
GO:0031410 cytoplasmic vesicle
IEA
GO_REF:0000043
ACCEPT
Summary: Cytoplasmic vesicle from UniProt keywords. Same as transport vesicle - eosinophil granules.
Reason: Granules are cytoplasmic vesicles, accurate localization.
Supporting Evidence:
PMID:39682685
ITGB2-AS1 deficiency led to impaired eosinophil differentiation, as evidenced by a reduction in cytoplasmic granules and decreased expression of key eosinophil granule proteins, including eosinophil peroxidase (EPX) and major basic protein-1 (MBP-1).
GO:0042742 defense response to bacterium
IEA
GO_REF:0000043
ACCEPT
Summary: Defense response to bacterium from UniProt keywords. MBP has direct antimicrobial activity against Gram+ and Gram- bacteria.
Reason: Experimentally supported - MBP and derived peptides kill bacteria via membrane disruption.
GO:0005515 protein binding
IPI
PMID:12421832
Complex of pregnancy-associated plasma protein-A and the pro...
MODIFY
Summary: Protein binding from PMID:7685339 (original PAPP-A/proMBP complex discovery). Per CLAUDE.md and PR #766 review feedback, the generic protein-binding term is uninformative β€” the documented interaction is proMBP inhibiting PAPP-A metalloprotease, so a more specific MF term (GO:0008191 metalloendopeptidase inhibitor activity) is appropriate. Action changed ACCEPT β†’ MODIFY with replacement.
Reason: Seminal paper demonstrating proMBP-PAPP-A disulfide bridge in pregnancy serum; the proMBP form acts as a metalloendopeptidase inhibitor of PAPP-A.
Supporting Evidence:
PMID:12421832
2002 Nov 5. Complex of pregnancy-associated plasma protein-A and the proform of eosinophil major basic protein.
PMID:7685339
Circulating human pregnancy-associated plasma protein-A is disulfide-bridged to the proform of eosinophil major basic protein.
GO:0005515 protein binding
IPI
PMID:7685339
Circulating human pregnancy-associated plasma protein-A is d...
MODIFY
Summary: Protein binding from PMID:7685339 (original PAPP-A/proMBP complex discovery). Per CLAUDE.md and PR #766 review feedback, the generic protein-binding term is uninformative β€” the documented interaction is proMBP inhibiting PAPP-A metalloprotease, so a more specific MF term (GO:0008191 metalloendopeptidase inhibitor activity) is appropriate. Action changed ACCEPT β†’ MODIFY with replacement.
Reason: Seminal paper demonstrating proMBP-PAPP-A disulfide bridge in pregnancy serum; the proMBP form acts as a metalloendopeptidase inhibitor of PAPP-A.
Supporting Evidence:
PMID:12421832
2002 Nov 5. Complex of pregnancy-associated plasma protein-A and the proform of eosinophil major basic protein.
PMID:7685339
Circulating human pregnancy-associated plasma protein-A is disulfide-bridged to the proform of eosinophil major basic protein.
GO:0002215 defense response to nematode
IEA
GO_REF:0000107
ACCEPT
Summary: Defense response to nematode from Ensembl orthology. MBP is critical for killing helminth parasites.
Reason: Core antiparasitic function - knockout mice show impaired killing of Strongyloides and filarial worms.
Supporting Evidence:
file:human/PRG2/PRG2-deep-research-falcon.md
Soluble MBP-1 is described as **cytotoxic** and **membrane-disruptive**, whereas **proMBP-1** and **isolated nanocrystalline cores** of MBP-1 are reported as **nontoxic**, indicating that precursor neutralization plus crystallization are key protective strategies inside the eosinophil.
GO:0032693 negative regulation of interleukin-10 production
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: Negative regulation of IL-10 production from Ensembl orthology. May reflect immunomodulatory effects.
Reason: Pleiotropic immunomodulation, not direct core function of MBP.
GO:0032753 positive regulation of interleukin-4 production
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: Positive regulation of IL-4 production from Ensembl orthology. Reflects role in Th2 allergic responses.
Reason: Downstream effect in allergic inflammation, not core molecular function.
GO:0030021 extracellular matrix structural constituent conferring compression resistance
HDA
PMID:28344315
Proteomic characterization of human multiple myeloma bone ma...
REMOVE
Summary: ECM structural constituent conferring compression resistance from PMID:28344315 (myeloma bone marrow ECM proteomics).
Reason: Over-annotation from high-throughput proteomics. MBP is not a structural ECM protein, likely contaminant from eosinophils in marrow.
Supporting Evidence:
PMID:28344315
Proteomic characterization of human multiple myeloma bone marrow extracellular matrix.
GO:0031012 extracellular matrix
HDA
PMID:28344315
Proteomic characterization of human multiple myeloma bone ma...
REMOVE
Summary: Extracellular matrix from PMID:25037231 (proteomics).
Reason: Same as above - not an ECM component.
Supporting Evidence:
PMID:28344315
Proteomic characterization of human multiple myeloma bone marrow extracellular matrix.
PMID:25037231
Extracellular matrix signatures of human primary metastatic colon cancers and their metastases to liver.
GO:0030021 extracellular matrix structural constituent conferring compression resistance
RCA
PMID:25037231
Extracellular matrix signatures of human primary metastatic ...
REMOVE
Summary: ECM structural constituent from PMID:25037231 (colon cancer ECM proteomics). Same as above.
Reason: Over-annotation from proteomics. MBP may bind to ECM via heparan sulfate but is not a structural ECM component.
Supporting Evidence:
PMID:25037231
Extracellular matrix signatures of human primary metastatic colon cancers and their metastases to liver.
GO:0031012 extracellular matrix
HDA
PMID:25037231
Extracellular matrix signatures of human primary metastatic ...
REMOVE
Summary: Extracellular matrix from PMID:25037231 (proteomics).
Reason: Same as above - not an ECM component.
Supporting Evidence:
PMID:28344315
Proteomic characterization of human multiple myeloma bone marrow extracellular matrix.
PMID:25037231
Extracellular matrix signatures of human primary metastatic colon cancers and their metastases to liver.
GO:0005576 extracellular region
TAS
Reactome:R-HSA-6800434
ACCEPT
Summary: Extracellular region from PMID:8547309 (rat MBP cloning, showing secreted protein).
Reason: Confirmed secreted protein localization.
Supporting Evidence:
PMID:8547309
Cloning of cDNA for rat eosinophil major basic protein.
GO:1904813 ficolin-1-rich granule lumen
TAS
Reactome:R-HSA-6800434
REMOVE
Summary: Ficolin-1-rich granule lumen from Reactome β€” this is a neutrophil- specific granule type, but MBP is in eosinophil granules, not neutrophils. Per PR #766 review feedback, the prior KEEP_AS_NON_CORE action contradicted the reasoning that calls this a likely annotation error; correct action for an inaccurate annotation is REMOVE.
Reason: Likely annotation error. MBP is in eosinophil granules (specific/ crystalline core), not neutrophil ficolin-rich granules. The eosinophil specific granule and secretory granule annotations elsewhere in the review accurately capture MBP localization.
GO:0070062 extracellular exosome
HDA
PMID:23533145
In-depth proteomic analyses of exosomes isolated from expres...
REMOVE
Summary: Extracellular exosome from PMID:23533145 (prostatic secretion exosome proteomics).
Reason: Over-annotation from high-throughput study. MBP not normally in exosomes, likely contamination.
Supporting Evidence:
PMID:23533145
2013 Apr 23. In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine.
GO:0030246 carbohydrate binding
TAS
PMID:1565101
Purification and cDNA cloning of a novel factor produced by ...
ACCEPT
Summary: Carbohydrate binding with traceable author statement from PMID:1565101 (original characterization).
Reason: Experimentally demonstrated carbohydrate binding activity.
Supporting Evidence:
PMID:1565101
Purification and cDNA cloning of a novel factor produced by a human T-cell hybridoma: sequence homology with animal lectins.
GO:0005576 extracellular region
TAS
PMID:8547309
Cloning of cDNA for rat eosinophil major basic protein.
ACCEPT
Summary: Extracellular region from PMID:8547309 (rat MBP cloning, showing secreted protein).
Reason: Confirmed secreted protein localization.
Supporting Evidence:
PMID:8547309
Cloning of cDNA for rat eosinophil major basic protein.

Core Functions

Binding sulfated polysaccharides (heparin, heparan sulfate) via highly cationic surface on C-type lectin-like fold. This interaction is central to MBP's biological activities - enables binding to pathogen surfaces, host cell membranes, and tissue matrix components.

Supporting Evidence:
  • file:human/PRG2/PRG2-uniprot.txt
    Crystal structure reveals heparin-binding site; MBP damages helminth and bacterial membranes via cationic interactions.

References

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Deep Research

Falcon

(PRG2-deep-research-falcon.md)

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OpenAI

(PRG2-deep-research-openai.md)

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Perplexity

(PRG2-deep-research-perplexity-lite.md)

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Perplexity

(PRG2-deep-research-perplexity.md)

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