Eosinophil major basic protein 1 (MBP-1), a highly cationic protein (~13.8 kDa, pI ~11.4) that is the predominant constituent of the crystalline core in eosinophil secondary granules. Synthesized as a 222-amino acid precursor with an acidic, heavily glycosylated prosegment (~9 kDa) that neutralizes the toxicity of the basic mature domain during biosynthesis. The prosegment contains N-linked, O-linked, and glycosaminoglycan chains (hence "proteoglycan 2"), raising precursor mass to 30-50 kDa. Upon maturation, the prosegment is proteolytically cleaved in the Golgi/secretory granule, yielding the active 117-residue MBP that is stored in paracrystalline arrays within granules. Structurally, MBP adopts a C-type lectin-like fold but lacks Ca2+-binding sites; instead presents a highly cationic surface for binding sulfated polysaccharides like heparin and heparan sulfate. Primary function: cytotoxic effector in antiparasitic defense - directly damages helminth larvae membranes and cuticles (experimental knockout mice show impaired killing of Strongyloides and filarial worms). Also exhibits broad antimicrobial activity against bacteria and fungi via membrane disruption. Immunomodulatory roles: triggers degranulation of mast cells and basophils (histamine release), activates neutrophils (superoxide production) and platelets. Toxic to host cells - causes epithelial damage and denudation in allergic diseases. In asthma, acts as allosteric antagonist of M2 muscarinic acetylcholine receptors on parasympathetic neurons, disabling inhibitory feedback and causing bronchospasm and airway hyperresponsiveness. Inhibits heparanase (first known endogenous heparanase inhibitor). In chronic settings, induces TGF-Ξ² and MMP-1 expression, promoting fibrosis and tissue remodeling. Dual biology: the proMBP form is abundantly expressed in placenta during pregnancy and secreted into maternal circulation, where it forms disulfide-linked 1:1 complexes with PAPP-A (pregnancy-associated plasma protein A), inhibiting this metalloprotease's cleavage of IGFBPs and thereby modulating IGF signaling for fetal growth. ProMBP also binds angiotensinogen and complement C3dg. The PAPP-A/proMBP complex is a clinical biomarker in first-trimester Down syndrome screening. ProMBP is non-toxic (acidic prosegment renders it inert), contrasting with the highly cytotoxic mature MBP released from eosinophils. MBP levels correlate with disease severity in asthma, eosinophilic esophagitis, and other eosinophil-driven conditions.
Definition: The activity of directly killing or damaging target cells or organisms through membrane permeabilization or disruption, particularly via cationic charge-based interactions, as exhibited by antimicrobial peptides and granule proteins.
Justification: MBP's primary function is direct killing of parasites and microbes via membrane permeabilization. Current GO lacks specific term for this cationic antimicrobial peptide-like activity. Knockout mice show impaired parasite killing; purified MBP kills helminths, bacteria, fungi, and mammalian cells via membrane disruption.
Parent term: molecular_function
Definition: The activity of binding to M2 muscarinic acetylcholine receptors and blocking their inhibitory function, thereby preventing feedback inhibition of acetylcholine release from parasympathetic neurons.
Justification: MBP's allosteric antagonism of M2 receptors on airway nerves is a key mechanism in asthma pathophysiology, but lacks specific GO annotation. MBP binds M2 receptors, blocks inhibitory feedback, causes unrestrained acetylcholine release and bronchospasm. Heparin neutralization of MBP prevents this effect.
Parent term: neurotransmitter receptor activity
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
| GO:0002376 immune system process | IEA GO_REF:0000043 | ACCEPT | Summary: Electronic annotation for immune system process from UniProt keywords. MBP is central to eosinophil-mediated immunity. Reason: Core biological process - MBP is key effector in antiparasitic and antimicrobial defense. Supporting Evidence: file:human/PRG2/PRG2-deep-research-perplexity-lite.md See deep research file for comprehensive analysis |
| GO:0005576 extracellular region | IEA GO_REF:0000044 | ACCEPT | Summary: Extracellular region from UniProt subcellular location. MBP is released from eosinophils and acts extracellularly. Reason: Core localization - MBP functions in extracellular space after degranulation. |
| GO:0006955 immune response | IEA GO_REF:0000002 | ACCEPT | Summary: Electronic annotation for immune response from InterPro domain. MBP kills parasites and microbes as part of innate immunity. Reason: Core function in immune defense, experimentally validated in helminth killing. Supporting Evidence: PMID:38885626 Eosinophils have numerous roles in type 2 inflammation depending on their activation states in the blood and airway or after encounter with inflammatory mediators. file:human/PRG2/PRG2-deep-research-falcon.md Soluble MBP-1 is described as **cytotoxic** and **membrane-disruptive**, whereas **proMBP-1** and **isolated nanocrystalline cores** of MBP-1 are reported as **nontoxic**, indicating that precursor neutralization plus crystallization are key protective strategies inside the eosinophil. |
| GO:0008201 heparin binding | IEA GO_REF:0000043 | ACCEPT | Summary: Heparin binding from UniProt keywords. MBP strongly binds heparin and heparan sulfate via cationic surface. Reason: Core molecular function - crystal structure shows heparin-binding site, physiologically relevant for tissue interactions. Supporting Evidence: file:human/PRG2/PRG2-deep-research-falcon.md MBP-1 retains a **CTL-like carbohydrate-binding region**, but the in situ granule form lacks the canonical acidic residues for **Ca2+-dependent carbohydrate binding**, explaining loss of canonical lectin behavior. By contrast, purified/recrystallized MBP-1 can bind **sulfated sugars such as heparin**. |
| GO:0030133 transport vesicle | IEA GO_REF:0000044 | ACCEPT | Summary: Transport vesicle from UniProt subcellular location. MBP is in secretory granules. Reason: Accurate - MBP is stored in eosinophil secondary granules (transport/secretory vesicles). Supporting Evidence: file:human/PRG2/PRG2-deep-research-falcon.md MBP-1 forms the **dense nanocrystalline core** of **eosinophil secretory granules (SGr)** and is stored as **nanocrystals** in resting cells. |
| GO:0030246 carbohydrate binding | IEA GO_REF:0000043 | ACCEPT | Summary: Carbohydrate binding from UniProt keywords. MBP has C-type lectin-like fold and binds sulfated polysaccharides. Reason: Structural feature - lectin-like fold binds sulfated carbohydrates. |
| GO:0031410 cytoplasmic vesicle | IEA GO_REF:0000043 | ACCEPT | Summary: Cytoplasmic vesicle from UniProt keywords. Same as transport vesicle - eosinophil granules. Reason: Granules are cytoplasmic vesicles, accurate localization. Supporting Evidence: PMID:39682685 ITGB2-AS1 deficiency led to impaired eosinophil differentiation, as evidenced by a reduction in cytoplasmic granules and decreased expression of key eosinophil granule proteins, including eosinophil peroxidase (EPX) and major basic protein-1 (MBP-1). |
| GO:0042742 defense response to bacterium | IEA GO_REF:0000043 | ACCEPT | Summary: Defense response to bacterium from UniProt keywords. MBP has direct antimicrobial activity against Gram+ and Gram- bacteria. Reason: Experimentally supported - MBP and derived peptides kill bacteria via membrane disruption. |
| GO:0005515 protein binding | IPI PMID:12421832 Complex of pregnancy-associated plasma protein-A and the pro... | MODIFY | Summary: Protein binding from PMID:7685339 (original PAPP-A/proMBP complex discovery). Per CLAUDE.md and PR #766 review feedback, the generic protein-binding term is uninformative β the documented interaction is proMBP inhibiting PAPP-A metalloprotease, so a more specific MF term (GO:0008191 metalloendopeptidase inhibitor activity) is appropriate. Action changed ACCEPT β MODIFY with replacement. Reason: Seminal paper demonstrating proMBP-PAPP-A disulfide bridge in pregnancy serum; the proMBP form acts as a metalloendopeptidase inhibitor of PAPP-A. Proposed replacements: metalloendopeptidase inhibitor activity Supporting Evidence: PMID:12421832 2002 Nov 5. Complex of pregnancy-associated plasma protein-A and the proform of eosinophil major basic protein. PMID:7685339 Circulating human pregnancy-associated plasma protein-A is disulfide-bridged to the proform of eosinophil major basic protein. |
| GO:0005515 protein binding | IPI PMID:7685339 Circulating human pregnancy-associated plasma protein-A is d... | MODIFY | Summary: Protein binding from PMID:7685339 (original PAPP-A/proMBP complex discovery). Per CLAUDE.md and PR #766 review feedback, the generic protein-binding term is uninformative β the documented interaction is proMBP inhibiting PAPP-A metalloprotease, so a more specific MF term (GO:0008191 metalloendopeptidase inhibitor activity) is appropriate. Action changed ACCEPT β MODIFY with replacement. Reason: Seminal paper demonstrating proMBP-PAPP-A disulfide bridge in pregnancy serum; the proMBP form acts as a metalloendopeptidase inhibitor of PAPP-A. Proposed replacements: metalloendopeptidase inhibitor activity Supporting Evidence: PMID:12421832 2002 Nov 5. Complex of pregnancy-associated plasma protein-A and the proform of eosinophil major basic protein. PMID:7685339 Circulating human pregnancy-associated plasma protein-A is disulfide-bridged to the proform of eosinophil major basic protein. |
| GO:0002215 defense response to nematode | IEA GO_REF:0000107 | ACCEPT | Summary: Defense response to nematode from Ensembl orthology. MBP is critical for killing helminth parasites. Reason: Core antiparasitic function - knockout mice show impaired killing of Strongyloides and filarial worms. Supporting Evidence: file:human/PRG2/PRG2-deep-research-falcon.md Soluble MBP-1 is described as **cytotoxic** and **membrane-disruptive**, whereas **proMBP-1** and **isolated nanocrystalline cores** of MBP-1 are reported as **nontoxic**, indicating that precursor neutralization plus crystallization are key protective strategies inside the eosinophil. |
| GO:0032693 negative regulation of interleukin-10 production | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Negative regulation of IL-10 production from Ensembl orthology. May reflect immunomodulatory effects. Reason: Pleiotropic immunomodulation, not direct core function of MBP. |
| GO:0032753 positive regulation of interleukin-4 production | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Positive regulation of IL-4 production from Ensembl orthology. Reflects role in Th2 allergic responses. Reason: Downstream effect in allergic inflammation, not core molecular function. |
| GO:0030021 extracellular matrix structural constituent conferring compression resistance | HDA PMID:28344315 Proteomic characterization of human multiple myeloma bone ma... | REMOVE | Summary: ECM structural constituent conferring compression resistance from PMID:28344315 (myeloma bone marrow ECM proteomics). Reason: Over-annotation from high-throughput proteomics. MBP is not a structural ECM protein, likely contaminant from eosinophils in marrow. Supporting Evidence: PMID:28344315 Proteomic characterization of human multiple myeloma bone marrow extracellular matrix. |
| GO:0031012 extracellular matrix | HDA PMID:28344315 Proteomic characterization of human multiple myeloma bone ma... | REMOVE | Summary: Extracellular matrix from PMID:25037231 (proteomics). Reason: Same as above - not an ECM component. Supporting Evidence: PMID:28344315 Proteomic characterization of human multiple myeloma bone marrow extracellular matrix. PMID:25037231 Extracellular matrix signatures of human primary metastatic colon cancers and their metastases to liver. |
| GO:0030021 extracellular matrix structural constituent conferring compression resistance | RCA PMID:25037231 Extracellular matrix signatures of human primary metastatic ... | REMOVE | Summary: ECM structural constituent from PMID:25037231 (colon cancer ECM proteomics). Same as above. Reason: Over-annotation from proteomics. MBP may bind to ECM via heparan sulfate but is not a structural ECM component. Supporting Evidence: PMID:25037231 Extracellular matrix signatures of human primary metastatic colon cancers and their metastases to liver. |
| GO:0031012 extracellular matrix | HDA PMID:25037231 Extracellular matrix signatures of human primary metastatic ... | REMOVE | Summary: Extracellular matrix from PMID:25037231 (proteomics). Reason: Same as above - not an ECM component. Supporting Evidence: PMID:28344315 Proteomic characterization of human multiple myeloma bone marrow extracellular matrix. PMID:25037231 Extracellular matrix signatures of human primary metastatic colon cancers and their metastases to liver. |
| GO:0005576 extracellular region | TAS Reactome:R-HSA-6800434 | ACCEPT | Summary: Extracellular region from PMID:8547309 (rat MBP cloning, showing secreted protein). Reason: Confirmed secreted protein localization. Supporting Evidence: PMID:8547309 Cloning of cDNA for rat eosinophil major basic protein. |
| GO:1904813 ficolin-1-rich granule lumen | TAS Reactome:R-HSA-6800434 | REMOVE | Summary: Ficolin-1-rich granule lumen from Reactome β this is a neutrophil- specific granule type, but MBP is in eosinophil granules, not neutrophils. Per PR #766 review feedback, the prior KEEP_AS_NON_CORE action contradicted the reasoning that calls this a likely annotation error; correct action for an inaccurate annotation is REMOVE. Reason: Likely annotation error. MBP is in eosinophil granules (specific/ crystalline core), not neutrophil ficolin-rich granules. The eosinophil specific granule and secretory granule annotations elsewhere in the review accurately capture MBP localization. |
| GO:0070062 extracellular exosome | HDA PMID:23533145 In-depth proteomic analyses of exosomes isolated from expres... | REMOVE | Summary: Extracellular exosome from PMID:23533145 (prostatic secretion exosome proteomics). Reason: Over-annotation from high-throughput study. MBP not normally in exosomes, likely contamination. Supporting Evidence: PMID:23533145 2013 Apr 23. In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. |
| GO:0030246 carbohydrate binding | TAS PMID:1565101 Purification and cDNA cloning of a novel factor produced by ... | ACCEPT | Summary: Carbohydrate binding with traceable author statement from PMID:1565101 (original characterization). Reason: Experimentally demonstrated carbohydrate binding activity. Supporting Evidence: PMID:1565101 Purification and cDNA cloning of a novel factor produced by a human T-cell hybridoma: sequence homology with animal lectins. |
| GO:0005576 extracellular region | TAS PMID:8547309 Cloning of cDNA for rat eosinophil major basic protein. | ACCEPT | Summary: Extracellular region from PMID:8547309 (rat MBP cloning, showing secreted protein). Reason: Confirmed secreted protein localization. Supporting Evidence: PMID:8547309 Cloning of cDNA for rat eosinophil major basic protein. |
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