RAD18

UniProt ID: Q9NS91
Organism: Homo sapiens
Review Status: COMPLETE
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Gene Description

RAD18 is a RING-type E3 ubiquitin ligase (EC 2.3.2.27) that functions as a central regulator of DNA damage tolerance (DDT). In complex with its E2 partner RAD6 (UBE2A/UBE2B), RAD18 catalyzes monoubiquitination of PCNA at Lys164, which is the key initiating event for translesion DNA synthesis (TLS). This modification recruits Y-family TLS polymerases (e.g., POL eta) to stalled replication forks, enabling bypass of DNA lesions. RAD18 contains functional domains including a RING finger (E3 ligase catalytic activity), UBZ domain (ubiquitin binding/damage site targeting), SAP domain (DNA/chromatin binding for recognition of forked/ssDNA), and a PIP-like motif for PCNA interaction. RAD18 also participates in error-free template switching via K63-linked PCNA polyubiquitination and exhibits crosstalk with the Fanconi anemia pathway and homologous recombination.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0005634 nucleus
IBA
GO_REF:0000033
ACCEPT
Summary: RAD18 is localized to the nucleus where it carries out its DNA damage tolerance functions. Multiple studies confirm nuclear localization: PMID:10884424 identified hRAD18 as nuclear, PMID:15632077 showed RAD18 colocalizes with BRCTx in the nucleus, PMID:22036607 demonstrated nuclear localization and nuclear inclusion body formation, and PMID:25023518 showed nuclear foci formation after DNA damage.
Reason: Nuclear localization is well-supported by multiple experimental studies. The IBA annotation is phylogenetically consistent with experimental evidence from human and model organisms.
Supporting Evidence:
PMID:10884424
hRad18 protein binds to hHR6 protein through a conserved ring-finger motif
PMID:15632077
BRCTx binds to the C terminus of hRAD18 in yeast two-hybrid and immunoprecipitation assays and colocalizes with this protein in the nucleus
PMID:22036607
RAD18-BRCTx interaction is required for efficient repair of UV-induced DNA damage
file:human/RAD18/RAD18-deep-research-falcon.md
model: Edison Scientific Literature
GO:0006301 DNA damage tolerance
IBA
GO_REF:0000033
ACCEPT
Summary: DNA damage tolerance is the core biological process of RAD18. RAD18-mediated PCNA monoubiquitination is the key initiating event for translesion synthesis and template switching, both major branches of DDT. Loss of RAD18 results in defective postreplication repair and hypersensitivity to UV, MMS, and mitomycin C (PMID:10884424). Recent studies (Chen et al. 2024, Ma et al. 2024) confirm RAD18's central role in DDT through PCNA ubiquitination.
Reason: This is the primary biological process annotation for RAD18 and is strongly supported by extensive literature. The IBA annotation correctly captures the core function.
Supporting Evidence:
PMID:10884424
Stable transformants with hRad18 mutated in this motif become sensitive to UV, methyl methanesulfonate, and mitomycin C, and are defective in the replication of UV-damaged DNA
PMID:10908344
Through interaction and complex formation with HHR6A and HHR6B, RAD18 protein may play an important role in lesion bypass mechanisms in humans
GO:0006513 protein monoubiquitination
IBA
GO_REF:0000033
ACCEPT
Summary: RAD18, together with E2 RAD6, catalyzes monoubiquitination of PCNA at Lys164. This is the primary enzymatic output of RAD18 activity. Multiple studies confirm this including PMID:18363965 which shows the SAP domain is required for efficient mono-ubiquitination of PCNA, and PMID:25023518 which demonstrates that Rad18 is required for PCNA monoubiquitination.
Reason: Protein monoubiquitination accurately describes RAD18's enzymatic activity on its primary substrate PCNA. This is a core function annotation.
Supporting Evidence:
PMID:18363965
The SAP domain is also required for the efficient mono-ubiquitination of PCNA
PMID:25023518
Rad18 is a central E3 ubiquitin ligase in DDT, which exists in a monoubiquitinated (Rad18β€’Ub) and nonubiquitinated form in human cells
GO:0097505 Rad6-Rad18 complex
IBA
GO_REF:0000033
ACCEPT
Summary: RAD18 forms a stable complex with RAD6 (UBE2A/UBE2B in humans) that is essential for its E3 ubiquitin ligase function. PMID:10908344 demonstrated that human RAD18 interacts with HHR6A and HHR6B, with stable protein complexes identified and purified. PMID:10884424 showed hRad18 binds to hHR6 through the conserved ring-finger motif. PMID:18363965 confirmed that RAD18 complexed with RAD6B is recruited to stalled replication forks.
Reason: Complex formation with RAD6 is essential for RAD18 function and is well-supported by multiple experimental studies in human cells.
Supporting Evidence:
PMID:10908344
Human RAD18 protein (hRAD18) was found to interact with HHR6A and HHR6B. When co-expressed in yeast cells, stable hRAD18-HHR6A and hRAD18-HHR6B protein complexes were identified and purified to near homogeneity
PMID:10884424
In vivo, hRad18 protein binds to hHR6 protein through a conserved ring-finger motif
GO:0003677 DNA binding
IEA
GO_REF:0000120
ACCEPT
Summary: RAD18 binds DNA through its SAP domain, with preference for forked and single-stranded DNA structures. PMID:18363965 provides direct experimental evidence that RAD18 complexed with RAD6B preferentially binds to forked and ssDNA structures, with the SAP domain (residues 248-282) being crucial for DNA binding.
Reason: DNA binding is experimentally validated. The IEA annotation is correct and supported by direct evidence in PMID:18363965.
Supporting Evidence:
PMID:18363965
Human RAD18 complexed with RAD6B protein preferentially binds to forked and single-stranded DNA (ssDNA) structures
GO:0003697 single-stranded DNA binding
IEA
GO_REF:0000002
ACCEPT
Summary: PMID:18363965 directly demonstrated that RAD18-RAD6B complex binds to ssDNA structures localized at stalled replication forks. This binding is mediated by the SAP domain.
Reason: The IEA annotation is validated by experimental evidence. ssDNA binding is a more specific annotation than general DNA binding and accurately reflects RAD18's substrate preference.
Supporting Evidence:
PMID:18363965
Human RAD18 complexed with RAD6B protein preferentially binds to forked and single-stranded DNA (ssDNA) structures, which are known to be localized at stalled replication forks
GO:0005634 nucleus
IEA
GO_REF:0000120
ACCEPT
Summary: Duplicate annotation of nucleus localization, also supported by IBA evidence. Well-validated experimentally (see IBA annotation review above).
Reason: Correct annotation, duplicative with IBA but acceptable.
Supporting Evidence:
PMID:15632077
colocalizes with this protein in the nucleus
GO:0005694 chromosome
IEA
GO_REF:0000117
ACCEPT
Summary: RAD18 functions at replication forks and DNA damage sites on chromosomes. Its localization to chromatin during DNA damage response is well-documented, including localization to stalled replication forks and sites of double-strand breaks.
Reason: RAD18's association with chromosomes during replication stress and DNA damage is consistent with its function.
Supporting Evidence:
PMID:18363965
RAD18 complexed with RAD6B is recruited to stalled replication forks
GO:0005813 centrosome
IEA
GO_REF:0000044
ACCEPT
Summary: PMID:15632077 provides experimental evidence that BRCTx (a RAD18-interacting protein) localizes to the centrosome, and the study showed RAD18 interaction with BRCTx. RAD18 centrosome localization is experimentally supported.
Reason: Centrosome localization is supported by IDA evidence from PMID:15632077, validating the IEA annotation.
Supporting Evidence:
PMID:15632077
the BRCT domain of BRCTx is responsible for mediating its localization to the nucleus and centrosome in interphase cells
GO:0006281 DNA repair
IEA
GO_REF:0000120
ACCEPT
Summary: RAD18 participates in DNA repair through its role in postreplication repair. While DNA damage tolerance (GO:0006301) is more precise for RAD18's primary function, DNA repair as a parent term is not incorrect. PMID:10884424 describes RAD18's role in postreplication repair.
Reason: DNA repair is a broader term that encompasses RAD18's function. While DNA damage tolerance is more specific, this annotation is not incorrect.
Supporting Evidence:
PMID:10884424
Dysfunction of human Rad18 results in defective postreplication repair and hypersensitivity to multiple mutagens
GO:0006301 DNA damage tolerance
IEA
GO_REF:0000002
ACCEPT
Summary: Duplicate of IBA annotation. DNA damage tolerance is the core biological process for RAD18.
Reason: Correct annotation, duplicative with IBA evidence but acceptable.
Supporting Evidence:
PMID:10884424
Dysfunction of human Rad18 results in defective postreplication repair
GO:0006513 protein monoubiquitination
IEA
GO_REF:0000002
ACCEPT
Summary: Duplicate of IBA annotation. RAD18 catalyzes PCNA monoubiquitination.
Reason: Correct annotation, duplicative with IBA evidence.
Supporting Evidence:
PMID:18363965
The SAP domain is also required for the efficient mono-ubiquitination of PCNA
GO:0006974 DNA damage response
IEA
GO_REF:0000120
ACCEPT
Summary: RAD18 is involved in the cellular response to DNA damage, particularly at stalled replication forks. Multiple IDA annotations support this (PMID:22036607, PMID:25023518, PMID:25931565).
Reason: DNA damage response is well-supported by multiple experimental studies.
Supporting Evidence:
PMID:22036607
RAD18-BRCTx interaction is required for efficient repair of UV-induced DNA damage
GO:0008270 zinc ion binding
IEA
GO_REF:0000043
ACCEPT
Summary: RAD18 contains a RING finger domain and a UBZ (ubiquitin-binding zinc finger) domain, both of which coordinate zinc ions. The RING domain is essential for E3 ligase activity.
Reason: Zinc ion binding is structurally required for both the RING and UBZ domains. This is a valid molecular function annotation.
Supporting Evidence:
PMID:10884424
hRad18 protein binds to hHR6 protein through a conserved ring-finger motif
GO:0016740 transferase activity
IEA
GO_REF:0000043
MODIFY
Summary: RAD18 has E3 ubiquitin ligase activity (EC 2.3.2.27), which is a type of transferase. However, this is a very general term.
Reason: While technically correct, GO:0061630 (ubiquitin protein ligase activity) or GO:0004842 (ubiquitin-protein transferase activity) are more specific and informative.
GO:0046872 metal ion binding
IEA
GO_REF:0000043
ACCEPT
Summary: RAD18 binds zinc ions through its RING finger and UBZ domains. Metal ion binding is a parent term of zinc ion binding.
Reason: Correct but redundant with zinc ion binding annotation. Both are valid.
GO:0061630 ubiquitin protein ligase activity
IEA
GO_REF:0000120
ACCEPT
Summary: RAD18 is a RING-type E3 ubiquitin ligase (EC 2.3.2.27). It catalyzes ubiquitin transfer from E2 RAD6 to substrate PCNA. This is the core molecular function of RAD18.
Reason: This is the primary molecular function annotation for RAD18 and accurately describes its enzymatic activity.
Supporting Evidence:
PMID:10884424
hRad18 protein binds to hHR6 protein through a conserved ring-finger motif
PMID:10908344
stable hRAD18-HHR6A and hRAD18-HHR6B protein complexes were identified and purified
GO:0005515 protein binding
IPI
PMID:18316726
Human HLTF functions as a ubiquitin ligase for proliferating...
REMOVE
Summary: This annotation reflects RAD18 interaction with HLTF (Q14527). The study examined HLTF's role in PCNA polyubiquitination and showed RAD18-HLTF interaction.
Reason: Per curation guidelines, GO:0005515 (protein binding) is uninformative and should be replaced with more specific terms. The RAD18-HLTF interaction is functionally relevant to DNA damage tolerance pathway.
Supporting Evidence:
PMID:18316726
Human HLTF functions as a ubiquitin ligase for proliferating cell nuclear antigen polyubiquitination.
GO:0005515 protein binding
IPI
PMID:18719106
Polyubiquitination of proliferating cell nuclear antigen by ...
REMOVE
Summary: Another HLTF interaction annotation. HLTF and SHPRH are E3 ligases that interact with RAD18 for PCNA polyubiquitination.
Reason: GO:0005515 is uninformative. The interaction with HLTF is relevant to RAD18's role in DNA damage tolerance but protein binding term lacks specificity.
Supporting Evidence:
PMID:18719106
Polyubiquitination of proliferating cell nuclear antigen by HLTF and SHPRH prevents genomic instability from stalled replication forks.
GO:0005515 protein binding
IPI
PMID:19549727
Analysis of the human E2 ubiquitin conjugating enzyme protei...
REMOVE
Summary: High-throughput E2 interaction network study. Shows RAD18 interaction with UBE2A (P49459) and UBE2B (P63146), its E2 partners.
Reason: The RAD6 interaction is important but captured by Rad6-Rad18 complex annotation. Protein binding is too general.
Supporting Evidence:
PMID:19549727
Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network.
GO:0005515 protein binding
IPI
PMID:21422291
E3 ligase Rad18 promotes monoubiquitination rather than ubiq...
REMOVE
Summary: Study on RAD18 promoting monoubiquitination rather than chain formation. Shows RAD18-UBE2B interaction.
Reason: GO:0005515 is uninformative. The E2 interaction is captured by complex annotation.
Supporting Evidence:
PMID:21422291
E3 ligase Rad18 promotes monoubiquitination rather than ubiquitin chain formation by E2 enzyme Rad6.
GO:0005515 protein binding
IPI
PMID:24981860
Human-chromatin-related protein interactions identify a deme...
REMOVE
Summary: Chromatin-related protein interaction study. Shows RAD18-UBE2A interaction.
Reason: GO:0005515 is uninformative. High-throughput interactome data.
Supporting Evidence:
PMID:24981860
2014 Jun 26. Human-chromatin-related protein interactions identify a demethylase complex required for chromosome segregation.
GO:0005515 protein binding
IPI
PMID:25416956
A proteome-scale map of the human interactome network.
REMOVE
Summary: Large-scale human interactome mapping. Shows RAD18 interaction with TAX1BP1 (Q86VP1).
Reason: GO:0005515 is uninformative. High-throughput interactome data.
Supporting Evidence:
PMID:25416956
A proteome-scale map of the human interactome network.
GO:0005515 protein binding
IPI
PMID:26496610
A human interactome in three quantitative dimensions organiz...
REMOVE
Summary: Quantitative interactome study. Shows RAD18-UBE2A interaction.
Reason: GO:0005515 is uninformative. Redundant with other E2 interaction annotations.
Supporting Evidence:
PMID:26496610
Oct 22. A human interactome in three quantitative dimensions organized by stoichiometries and abundances.
GO:0005515 protein binding
IPI
PMID:28514442
Architecture of the human interactome defines protein commun...
REMOVE
Summary: Architecture of human interactome. Shows interactions with MAGEA3 (P43358) and UBE2B (P63146).
Reason: GO:0005515 is uninformative. High-throughput interactome data.
Supporting Evidence:
PMID:28514442
Architecture of the human interactome defines protein communities and disease networks.
GO:0005515 protein binding
IPI
PMID:32296183
A reference map of the human binary protein interactome.
REMOVE
Summary: Reference map of human binary interactome. Shows multiple interactions including SA1 (O14737), MAGEA3, GOLGA2, ORC2, DAZAP1, TAX1BP1, NAPB.
Reason: GO:0005515 is uninformative. High-throughput interactome data.
Supporting Evidence:
PMID:32296183
Apr 8. A reference map of the human binary protein interactome.
GO:0005515 protein binding
IPI
PMID:32814053
Interactome Mapping Provides a Network of Neurodegenerative ...
REMOVE
Summary: Neurodegenerative disease interactome study. Shows interactions with ATXN1 (P54253) and TARDBP (Q13148).
Reason: GO:0005515 is uninformative. These interactions may not be functionally relevant to RAD18's core DNA damage tolerance function.
Supporting Evidence:
PMID:32814053
Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains.
GO:0005515 protein binding
IPI
PMID:33961781
Dual proteome-scale networks reveal cell-specific remodeling...
REMOVE
Summary: Cell-specific interactome remodeling. Shows MAGEA3 and UBE2B interactions.
Reason: GO:0005515 is uninformative. The UBE2B interaction is captured by complex annotation.
Supporting Evidence:
PMID:33961781
2021 May 6. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
GO:0005515 protein binding
IPI
PMID:40205054
Multimodal cell maps as a foundation for structural and func...
REMOVE
Summary: Multimodal cell maps study. Shows MAGEA3 interaction.
Reason: GO:0005515 is uninformative.
Supporting Evidence:
PMID:40205054
Apr 9. Multimodal cell maps as a foundation for structural and functional genomics.
GO:0005654 nucleoplasm
IDA
GO_REF:0000052
ACCEPT
Summary: HPA immunofluorescence data showing RAD18 localization in nucleoplasm. Consistent with RAD18's nuclear function in DNA damage tolerance.
Reason: Nucleoplasm localization is consistent with RAD18's function at replication forks and DNA damage sites.
GO:0016604 nuclear body
IDA
GO_REF:0000052
ACCEPT
Summary: HPA data showing RAD18 in nuclear bodies. RAD18 forms foci at DNA damage sites, consistent with this annotation.
Reason: Nuclear body localization is consistent with RAD18's DNA damage-induced foci formation.
Supporting Evidence:
PMID:22036607
this interaction, mediated via highly conserved serine residues on the RAD18 C terminus, is required for BRCTx accumulation at DNA damage sites
GO:0016607 nuclear speck
IDA
GO_REF:0000052
ACCEPT
Summary: HPA data showing RAD18 in nuclear specks. This may reflect RAD18 foci or storage/regulatory localization.
Reason: Consistent with nuclear localization data from HPA.
GO:0016567 protein ubiquitination
IEA
GO_REF:0000041
ACCEPT
Summary: RAD18 catalyzes ubiquitination of PCNA. This is a parent term of protein monoubiquitination.
Reason: Correct but less specific than protein monoubiquitination. Both annotations are valid.
GO:0005515 protein binding
IPI
PMID:35849344
LncRNA CTBP1-DT-encoded microprotein DDUP sustains DNA damag...
REMOVE
Summary: LncRNA CTBP1-DT microprotein DDUP interaction study.
Reason: GO:0005515 is uninformative.
Supporting Evidence:
PMID:35849344
LncRNA CTBP1-DT-encoded microprotein DDUP sustains DNA damage response signalling to trigger dual DNA repair mechanisms.
GO:0005634 nucleus
IDA
PMID:25023518
DNA damage-specific deubiquitination regulates Rad18 functio...
ACCEPT
Summary: Zeman et al. 2014 showed RAD18 nuclear localization and formation of nuclear foci after DNA damage. The study demonstrates wild-type RAD18 forms detergent-resistant nuclear foci after MMS, UV, or ionizing radiation treatment.
Reason: Strong experimental evidence for nuclear localization. Core localization annotation.
Supporting Evidence:
PMID:25023518
Although wild-type Rad18 foci were observed after MMS treatment
GO:0006974 DNA damage response
IDA
PMID:25023518
DNA damage-specific deubiquitination regulates Rad18 functio...
ACCEPT
Summary: Zeman et al. 2014 comprehensively demonstrated RAD18's role in DNA damage response. RAD18 is deubiquitinated after MMS/H2O2 treatment, enabling interaction with SHPRH for error-free bypass.
Reason: Strong experimental support for RAD18's involvement in DNA damage response.
Supporting Evidence:
PMID:25023518
Upon exposure to MMS or H2O2, Rad18 is deubiquitinated, promoting a switch from Rad18β€’Ub–Rad18 complexes to Rad18–SHPRH complexes and error-free bypass of DNA lesions
GO:0042802 identical protein binding
IDA
PMID:25023518
DNA damage-specific deubiquitination regulates Rad18 functio...
ACCEPT
Summary: Zeman et al. 2014 demonstrated RAD18 homodimerization/self-interaction. The ubiquitinated form of RAD18 (Rad18-Ub) preferentially binds to non-ubiquitinated RAD18, and this interaction modulates RAD18 activity.
Reason: Self-interaction is experimentally demonstrated and functionally significant. This is more informative than generic protein binding.
Supporting Evidence:
PMID:25023518
Interestingly, Rad18β€’Ub also has a strong preference for binding to nonubiquitinated Rad18, suggesting that the ubiquitinated form may inhibit other Rad18 molecules in trans
GO:0051865 protein autoubiquitination
IDA
PMID:25023518
DNA damage-specific deubiquitination regulates Rad18 functio...
ACCEPT
Summary: RAD18 undergoes autoubiquitination with its E2 partner RAD6. Zeman et al. 2014 showed that ~25% of RAD18 exists in monoubiquitinated form, and this is enhanced by RAD6 co-expression.
Reason: Autoubiquitination is experimentally demonstrated and is an important regulatory mechanism for RAD18 activity.
Supporting Evidence:
PMID:25023518
Rad18 is monoubiquitinated in several different mammalian cell lines
GO:0005515 protein binding
IPI
PMID:22036607
RAD18-BRCTx interaction is required for efficient repair of ...
REMOVE
Summary: RAD18-BRCTx (Q8R3P9) interaction. BRCTx is a RAD18-interacting protein.
Reason: GO:0005515 is uninformative. The RAD18-BRCTx interaction is functionally relevant but should be captured by more specific terms.
Supporting Evidence:
PMID:22036607
Epub 2011 Oct 28. RAD18-BRCTx interaction is required for efficient repair of UV-induced DNA damage.
GO:0005634 nucleus
IDA
PMID:15632077
BRCTx is a novel, highly conserved RAD18-interacting protein...
ACCEPT
Summary: Adams et al. 2005 showed BRCTx colocalizes with RAD18 in the nucleus.
Reason: Confirms nuclear localization.
Supporting Evidence:
PMID:15632077
BRCTx binds to the C terminus of hRAD18 in yeast two-hybrid and immunoprecipitation assays and colocalizes with this protein in the nucleus
GO:0005634 nucleus
IDA
PMID:22036607
RAD18-BRCTx interaction is required for efficient repair of ...
ACCEPT
Summary: Liu et al. 2012 confirmed RAD18 nuclear localization during UV damage response.
Reason: Confirms nuclear localization.
Supporting Evidence:
PMID:22036607
Epub 2011 Oct 28. RAD18-BRCTx interaction is required for efficient repair of UV-induced DNA damage.
GO:0005813 centrosome
IDA
PMID:15632077
BRCTx is a novel, highly conserved RAD18-interacting protein...
ACCEPT
Summary: Adams et al. 2005 showed BRCTx localizes to centrosome and interacts with RAD18. This suggests RAD18 may also localize to centrosome through BRCTx interaction.
Reason: Centrosome localization is supported by experimental evidence.
Supporting Evidence:
PMID:15632077
the BRCT domain of BRCTx is responsible for mediating its localization to the nucleus and centrosome in interphase cells
GO:0006974 DNA damage response
IDA
PMID:22036607
RAD18-BRCTx interaction is required for efficient repair of ...
ACCEPT
Summary: Liu et al. 2012 demonstrated RAD18-BRCTx module is critical for UV-induced DNA damage repair.
Reason: Strong experimental support for DNA damage response involvement.
Supporting Evidence:
PMID:22036607
RAD18-BRCTx interaction is required for efficient repair of UV-induced DNA damage
GO:0042405 nuclear inclusion body
IDA
PMID:22036607
RAD18-BRCTx interaction is required for efficient repair of ...
ACCEPT
Summary: Liu et al. 2012 showed RAD18 forms nuclear inclusion bodies during DNA damage.
Reason: Specific localization during DNA damage response.
Supporting Evidence:
PMID:22036607
this interaction, mediated via highly conserved serine residues on the RAD18 C terminus, is required for BRCTx accumulation at DNA damage sites
GO:0044877 protein-containing complex binding
IPI
PMID:25931565
DNA repair. Proteomics reveals dynamic assembly of repair co...
ACCEPT
Summary: Raschle et al. 2015 identified SLF1 (Q8IY18) and SLF2 (Q96SB8) as forming a complex with RAD18 that recruits SMC5/6 to DNA lesions.
Reason: More informative than generic protein binding. RAD18 forms a complex with SLF1/SLF2 for SMC5/6 recruitment.
Supporting Evidence:
PMID:25931565
SLF1 and SLF2, which form a complex with RAD18 and together define a pathway that suppresses genome instability by recruiting the SMC5/6 cohesion complex to DNA lesions
GO:0005515 protein binding
IPI
PMID:25931565
DNA repair. Proteomics reveals dynamic assembly of repair co...
REMOVE
Summary: Same study as above, shows interactions with ANKRD17 (Q8IX21) and ELF1 (Q9BQI6).
Reason: GO:0005515 is uninformative. The more specific protein-containing complex binding annotation captures the SLF1/SLF2 interaction.
Supporting Evidence:
PMID:25931565
Apr 30. DNA repair. Proteomics reveals dynamic assembly of repair complexes during bypass of DNA cross-links.
GO:0006974 DNA damage response
IDA
PMID:25931565
DNA repair. Proteomics reveals dynamic assembly of repair co...
ACCEPT
Summary: Raschle et al. 2015 proteomics study of DNA repair during ICL bypass revealed RAD18's role in the DNA damage response.
Reason: Strong experimental support from systematic proteomics study.
Supporting Evidence:
PMID:25931565
define a pathway that suppresses genome instability by recruiting the SMC5/6 cohesion complex to DNA lesions
GO:0035861 site of double-strand break
IDA
PMID:25931565
DNA repair. Proteomics reveals dynamic assembly of repair co...
ACCEPT
Summary: Raschle et al. 2015 showed RAD18 is recruited to DNA double-strand breaks as part of the repair complex assembly.
Reason: Specific localization to DSB sites during repair.
Supporting Evidence:
PMID:25931565
Among numerous prospective DNA repair factors, we identified SLF1 and SLF2, which form a complex with RAD18 and together define a pathway that suppresses genome instability by recruiting the SMC5/6 cohesion complex to DNA lesions
GO:0051984 positive regulation of chromosome segregation
IMP
PMID:25931565
DNA repair. Proteomics reveals dynamic assembly of repair co...
KEEP AS NON CORE
Summary: Raschle et al. 2015 showed RAD18-SLF1-SLF2 complex promotes genome stability, which includes proper chromosome segregation.
Reason: This is a downstream consequence of RAD18's DNA damage tolerance function rather than a core function. Keep as non-core.
Supporting Evidence:
PMID:25931565
define a pathway that suppresses genome instability
GO:0005654 nucleoplasm
TAS
Reactome:R-HSA-5652005
ACCEPT
Summary: Reactome annotation for RAD18:UBE2B complex binding to PCNA associated with damaged DNA.
Reason: Consistent with nucleoplasm localization.
GO:0005654 nucleoplasm
TAS
Reactome:R-HSA-5652009
ACCEPT
Summary: Reactome annotation for RAD18:UBE2B monoubiquitinating PCNA.
Reason: Consistent with nucleoplasm localization for PCNA ubiquitination.
GO:0005654 nucleoplasm
TAS
Reactome:R-HSA-8943003
ACCEPT
Summary: Reactome annotation for SHPRH polyubiquitinating monoubiquitinated PCNA (RAD18 participates).
Reason: Consistent with nucleoplasm localization.
GO:0005654 nucleoplasm
TAS
Reactome:R-HSA-8943007
ACCEPT
Summary: Reactome annotation for SHPRH binding monoUb-PCNA with RAD6:RAD18.
Reason: Consistent with nucleoplasm localization.
GO:0005654 nucleoplasm
TAS
Reactome:R-HSA-8943040
ACCEPT
Summary: Reactome annotation for HLTF polyubiquitinating monoubiquitinated PCNA.
Reason: Consistent with nucleoplasm localization.
GO:0005654 nucleoplasm
TAS
Reactome:R-HSA-8943041
ACCEPT
Summary: Reactome annotation for HLTF binding monoUb-PCNA with RAD6:RAD18.
Reason: Consistent with nucleoplasm localization.
GO:0031593 polyubiquitin modification-dependent protein binding
IDA
PMID:22742833
Tandem protein interaction modules organize the ubiquitin-de...
ACCEPT
Summary: Panier et al. 2012 showed RAD18 accumulates at DSB sites through ubiquitin-binding domains (UBZ). RAD18's UBZ domain recognizes ubiquitinated chromatin for recruitment to damage sites.
Reason: This is a specific molecular function that describes how RAD18 is recruited to damage sites via ubiquitin recognition. More informative than generic protein binding.
Supporting Evidence:
PMID:22742833
RNF168, its paralog RNF169, RAD18, and the BRCA1-interacting RAP80 protein accumulate at DSB sites through the use of bipartite modules composed of UBDs juxtaposed to peptide motifs that provide specificity
GO:0005515 protein binding
IPI
PMID:22681887
Spartan/C1orf124, a reader of PCNA ubiquitylation and a regu...
REMOVE
Summary: Spartan/C1orf124 (Q9H040) interaction - a reader of PCNA ubiquitylation.
Reason: GO:0005515 is uninformative.
Supporting Evidence:
PMID:22681887
Spartan/C1orf124, a reader of PCNA ubiquitylation and a regulator of UV-induced DNA damage response.
GO:0005515 protein binding
IPI
PMID:21659603
A DNA damage response screen identifies RHINO, a 9-1-1 and T...
REMOVE
Summary: RHINO (Q9BSD3) interaction study.
Reason: GO:0005515 is uninformative.
Supporting Evidence:
PMID:21659603
A DNA damage response screen identifies RHINO, a 9-1-1 and TopBP1 interacting protein required for ATR signaling.
GO:0000403 Y-form DNA binding
IDA
PMID:18363965
Recognition of forked and single-stranded DNA structures by ...
ACCEPT
Summary: Tsuji et al. 2008 directly demonstrated that RAD18-RAD6B complex preferentially binds to forked (Y-form) DNA structures at stalled replication forks.
Reason: This is a highly specific and experimentally validated molecular function. Y-form DNA binding is central to RAD18's recruitment to stalled forks.
Supporting Evidence:
PMID:18363965
Human RAD18 complexed with RAD6B protein preferentially binds to forked and single-stranded DNA (ssDNA) structures, which are known to be localized at stalled replication forks
GO:0005657 replication fork
IDA
PMID:18363965
Recognition of forked and single-stranded DNA structures by ...
ACCEPT
Summary: Tsuji et al. 2008 demonstrated RAD18-RAD6B recruitment to stalled replication forks via recognition of forked and ssDNA structures.
Reason: Replication fork localization is central to RAD18's function in DNA damage tolerance.
Supporting Evidence:
PMID:18363965
RAD18 complexed with RAD6B is recruited to stalled replication forks via interactions with forked DNA or long ssDNA structures
GO:0031625 ubiquitin protein ligase binding
IPI
PMID:18363965
Recognition of forked and single-stranded DNA structures by ...
ACCEPT
Summary: RAD18 binds to its E2 partner UBE2B (P63146/RAD6B). This is the E2 that provides ubiquitin for PCNA monoubiquitination.
Reason: Binding to E2 ubiquitin-conjugating enzyme is essential for E3 ligase function. This is more specific than generic protein binding.
Supporting Evidence:
PMID:18363965
RAD18 complexed with RAD6B protein
GO:0031625 ubiquitin protein ligase binding
IPI
PMID:10908344
The human RAD18 gene product interacts with HHR6A and HHR6B.
ACCEPT
Summary: Xin et al. 2000 demonstrated human RAD18 interacts with both HHR6A (UBE2A/P49459) and HHR6B (UBE2B/P63146), forming stable complexes.
Reason: E2 binding is essential for RAD18's E3 ligase function.
Supporting Evidence:
PMID:10908344
Human RAD18 protein (hRAD18) was found to interact with HHR6A and HHR6B
GO:0003684 damaged DNA binding
NAS
PMID:10884424
Dysfunction of human Rad18 results in defective postreplicat...
MODIFY
Summary: Tateishi et al. 2000 characterized human RAD18 as involved in postreplication repair of damaged DNA. While not directly demonstrating damaged DNA binding, the function implies recognition of damage-associated structures.
Reason: NAS evidence is weak. The more specific GO:0000403 (Y-form DNA binding) is supported by IDA evidence from PMID:18363965. RAD18 binds fork/ssDNA structures rather than damaged bases directly.
Proposed replacements: Y-form DNA binding
Supporting Evidence:
PMID:10884424
Dysfunction of human Rad18 results in defective postreplication repair and hypersensitivity to multiple mutagens.
GO:0005634 nucleus
NAS
PMID:10884424
Dysfunction of human Rad18 results in defective postreplicat...
ACCEPT
Summary: Early characterization paper. Nuclear localization is well-supported by later IDA evidence.
Reason: Consistent with IDA evidence from multiple studies.
Supporting Evidence:
PMID:10884424
Dysfunction of human Rad18 results in defective postreplication repair and hypersensitivity to multiple mutagens.
GO:0006281 DNA repair
NAS
PMID:10884424
Dysfunction of human Rad18 results in defective postreplicat...
ACCEPT
Summary: Tateishi et al. 2000 showed dysfunction of RAD18 results in defective postreplication repair. DNA repair is accurate but DNA damage tolerance (GO:0006301) is more specific.
Reason: DNA repair as a parent term is not incorrect, even though DNA damage tolerance is more specific.
Supporting Evidence:
PMID:10884424
Dysfunction of human Rad18 results in defective postreplication repair

Core Functions

RAD18 is a RING-type E3 ubiquitin ligase (EC 2.3.2.27) that, with its E2 partner RAD6 (UBE2A/UBE2B), catalyzes monoubiquitination of PCNA at Lys164. Core enzymatic function supported by multiple studies (PMID:10884424, PMID:18363965, PMID:25023518).

RAD18-RAD6B complex preferentially binds forked and ssDNA structures at stalled replication forks. The SAP domain is essential for DNA binding and fork recruitment. Directly demonstrated by PMID:18363965.

Molecular Function:
Y-form DNA binding
Directly Involved In:
Cellular Locations:

References

Gene Ontology annotation through association of InterPro records with GO terms
Annotation inferences using phylogenetic trees
Gene Ontology annotation based on UniPathway vocabulary mapping
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping
Gene Ontology annotation based on curation of immunofluorescence data
Electronic Gene Ontology annotations created by ARBA machine learning models
Combined Automated Annotation using Multiple IEA Methods
Dysfunction of human Rad18 results in defective postreplication repair and hypersensitivity to multiple mutagens.
  • RAD18 is essential for postreplication repair
  • RAD18 dysfunction causes sensitivity to UV, MMS, and mitomycin C
  • RAD18 binds to RAD6 through conserved ring-finger motif
The human RAD18 gene product interacts with HHR6A and HHR6B.
  • Human RAD18 forms stable complexes with UBE2A (HHR6A) and UBE2B (HHR6B)
  • RAD18 is ubiquitously expressed in human tissues
  • RAD18 plays role in lesion bypass mechanisms
BRCTx is a novel, highly conserved RAD18-interacting protein.
  • BRCTx binds to C-terminus of RAD18
  • RAD18 and BRCTx colocalize in nucleus
  • BRCTx localizes to nucleus and centrosome
Human HLTF functions as a ubiquitin ligase for proliferating cell nuclear antigen polyubiquitination.
  • HLTF interacts with RAD18
  • HLTF extends PCNA monoubiquitination to polyubiquitination
Recognition of forked and single-stranded DNA structures by human RAD18 complexed with RAD6B protein triggers its recruitment to stalled replication forks.
  • RAD18-RAD6B preferentially binds forked and ssDNA structures
  • SAP domain (residues 248-282) is crucial for DNA binding
  • SAP domain is required for efficient PCNA monoubiquitination
  • RAD18 recruits Pol eta to stalled replication forks
Polyubiquitination of proliferating cell nuclear antigen by HLTF and SHPRH prevents genomic instability from stalled replication forks.
  • HLTF and SHPRH extend RAD18-mediated PCNA monoubiquitination
RAD18-BRCTx interaction is required for efficient repair of UV-induced DNA damage.
  • RAD18 interacts with BRCTx in phosphorylation-dependent manner
  • RAD18-BRCTx module is critical for UV damage repair
  • RAD18 forms nuclear inclusion bodies
Spartan/C1orf124, a reader of PCNA ubiquitylation and a regulator of UV-induced DNA damage response.
  • Spartan reads RAD18-mediated PCNA ubiquitylation
Tandem protein interaction modules organize the ubiquitin-dependent response to DNA double-strand breaks.
  • RAD18 accumulates at DSB sites through UBD-LRM bipartite modules
  • RAD18 recognizes ubiquitinated chromatin via UBZ domain
DNA damage-specific deubiquitination regulates Rad18 functions to suppress mutagenesis.
  • RAD18 exists in monoubiquitinated and non-ubiquitinated forms
  • RAD18 is deubiquitinated after MMS or H2O2 treatment
  • Ubiquitinated RAD18 preferentially binds non-ubiquitinated RAD18
  • RAD18 deubiquitination promotes SHPRH interaction for error-free bypass
  • RAD18 forms nuclear foci after DNA damage
  • RAD18 autoubiquitination is promoted by RAD6
DNA repair. Proteomics reveals dynamic assembly of repair complexes during bypass of DNA cross-links.
  • RAD18 forms complex with SLF1 and SLF2
  • RAD18-SLF1-SLF2 recruits SMC5/6 to DNA lesions
  • RAD18 suppresses genome instability at ICLs
Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network.
  • High-throughput mapping of E2-E3 interactions
  • RAD18 interacts with UBE2A and UBE2B
E3 ligase Rad18 promotes monoubiquitination rather than ubiquitin chain formation by E2 enzyme Rad6.
  • RAD18 promotes monoubiquitination rather than chain formation
Human-chromatin-related protein interactions identify a demethylase complex required for chromosome segregation.
  • Chromatin-related protein interaction study
A proteome-scale map of the human interactome network.
  • Large-scale human interactome mapping
A human interactome in three quantitative dimensions organized by stoichiometries and abundances.
  • Quantitative interactome study of E2-E3 interactions
Architecture of the human interactome defines protein communities and disease networks.
  • Systematic mapping of human protein interactions
A reference map of the human binary protein interactome.
  • Comprehensive binary interactome mapping
Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains.
  • Disease-related protein interaction network
Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
  • Cell-specific interactome changes
Multimodal cell maps as a foundation for structural and functional genomics.
  • Multimodal proteomics approach
LncRNA CTBP1-DT-encoded microprotein DDUP sustains DNA damage response signalling to trigger dual DNA repair mechanisms.
  • DDUP microprotein interacts with DNA repair machinery
A DNA damage response screen identifies RHINO, a 9-1-1 and TopBP1 interacting protein required for ATR signaling.
  • RHINO as DNA damage response factor
Reactome:R-HSA-5652005
RAD18:UBE2B or RBX1:CUL4:DDB1:DTL ubiquitin ligase complex binds PCNA:POLD,POLE:RPA:RFC associated with damaged dsDNA
Reactome:R-HSA-5652009
RAD18:UBE2B or RBX1:CUL4:DDB1:DTL monoubiquitinates PCNA
Reactome:R-HSA-8943003
SHPRH polyubiquitinates monoubiquitinated PCNA
Reactome:R-HSA-8943007
SHPRH binds monoUb-K164-PCNA, RAD6:RAD18, UBE2V2:Ub:UBE2N
Reactome:R-HSA-8943040
HLTF polyubiquitinates monoubiquitinated PCNA
Reactome:R-HSA-8943041
HLTF binds monoUb-K164-PCNA, RAD6:RAD18, UBE2V2:Ub:UBE2N
file:human/RAD18/RAD18-deep-research-falcon.md
Deep research report on RAD18
file:human/RAD18/RAD18-deep-research-cyberian.md
Cyberian deep research on RAD18 function

Deep Research

Cyberian

(RAD18-deep-research-cyberian.md)
RAD18: E3 Ubiquitin-Protein Ligase in DNA Damage Tolerance Cyberian deep-research 18 citations 2026-01-23T18:44:54.157220

RAD18: E3 Ubiquitin-Protein Ligase in DNA Damage Tolerance

Introduction

RAD18 (also known as RNF73, RING finger protein 73) is an E3 ubiquitin-protein ligase that plays a central role in the cellular response to DNA damage, particularly in the DNA damage tolerance (DDT) pathway that allows cells to complete replication despite the presence of DNA lesions [hedglin-2015-regulation-abstract]. The human RAD18 gene was first identified as a homolog of the yeast RAD18, mapping to chromosome 3p24-25, a region frequently deleted in various cancers including lung, breast, ovary, and testis malignancies [tateishi-2000-dysfunction-abstract]. RAD18 functions primarily by catalyzing the monoubiquitination of proliferating cell nuclear antigen (PCNA) at lysine 164, a modification that serves as a molecular switch to recruit specialized translesion synthesis (TLS) polymerases capable of bypassing DNA lesions that would otherwise stall replicative polymerases [watanabe-2004-poleta-abstract].

The protein operates as part of an E2-E3 complex with the ubiquitin-conjugating enzyme RAD6 (also called UBE2A/UBE2B or hHR6), and this partnership is essential for its function in postreplication repair [tateishi-2000-dysfunction-abstract]. Beyond its canonical role in TLS, RAD18 has been implicated in additional DNA repair processes including homologous recombination, double-strand break repair, and the Fanconi anemia pathway, establishing it as a multifunctional coordinator of genome maintenance [huang-2009-hrrrepair-abstract; geng-2010-fanconianemia-abstract]. The enzymatic activity of RAD18 (EC 2.3.2.27) classifies it as a RING-type E3 ubiquitin transferase, and the protein belongs to the RAD18 family of ubiquitin ligases that is conserved across eukaryotes.

Enzymatic Activity and Substrate Specificity

RAD18 functions as an E3 ubiquitin-protein ligase that catalyzes the transfer of ubiquitin from an E2 ubiquitin-conjugating enzyme to specific substrate proteins. The primary and best-characterized substrate of RAD18 is PCNA, specifically at lysine 164 [watanabe-2004-poleta-abstract]. This monoubiquitination event is critical for initiating translesion DNA synthesis in response to replication fork stalling at DNA lesions.

A key mechanistic insight into RAD18 function was provided by structural and biochemical studies demonstrating that the RAD6/RAD18 complex specifically promotes monoubiquitination rather than polyubiquitin chain formation [hibbert-2011-monoubiquitination-abstract]. The E2 enzyme RAD6, when functioning alone, possesses an intrinsic capability for ubiquitin chain synthesis through a noncovalent interaction between ubiquitin and a "backside" binding site on RAD6. However, when RAD6 associates with RAD18, the C-terminal RAD6-binding domain (R6BD) of RAD18 competitively occupies this backside binding site, thereby preventing ubiquitin from binding there and blocking chain formation [hibbert-2011-monoubiquitination-abstract]. This elegant mechanism ensures that PCNA receives only a single ubiquitin moiety, which is the specific signal for TLS polymerase recruitment.

The substrate specificity of RAD18 extends beyond PCNA. Studies have identified 53BP1 as an additional direct substrate of RAD18-mediated ubiquitination [watanabe-2009-53bp1-abstract]. RAD18 monoubiquitinates the kinetochore-binding domain of 53BP1 at lysine 1268, and this modification enhances the chromatin retention of 53BP1 at sites of DNA double-strand breaks during G1 phase. RFC2, a subunit of the replication factor C complex, has also been reported as a RAD18 substrate [hedglin-2015-regulation-abstract]. The identification of multiple substrates indicates that RAD18 coordinates several aspects of the DNA damage response through its ubiquitination activity.

The complex stoichiometry of functional RAD18 has been elucidated through detailed structural analysis. The active complex consists of one RAD6 molecule bound to a RAD18 homodimer, forming a RAD6A-(RAD18)β‚‚ ternary complex [masuda-2012-asymmetric-abstract]. Interestingly, only one of the two RAD6-binding domains in the RAD18 dimer is necessary for complex formation and ligase activity, revealing an asymmetric functional architecture. Similarly, while inactivating mutations in the RING or SAP domains of both RAD18 subunits strongly reduces activity, inactivation in only one subunit has no effect, further supporting the asymmetric model.

Role in Translesion Synthesis and DNA Damage Tolerance

Translesion synthesis represents one of the two major DNA damage tolerance pathways that allow cells to complete DNA replication despite the presence of template lesions. When replicative polymerases encounter DNA damage, they stall, leading to uncoupling between the replicative helicase and polymerase activities. This uncoupling generates extended stretches of single-stranded DNA (ssDNA) that become coated with replication protein A (RPA) [hedglin-2015-regulation-abstract]. The RPA-ssDNA complex serves as the primary signal for RAD18 recruitment to stalled replication forks.

Upon recruitment, RAD18 together with RAD6 catalyzes the monoubiquitination of PCNA at K164. This modified form of PCNA (monoUb-PCNA) has substantially increased affinity for Y-family TLS polymerases, particularly DNA polymerase eta (PolΞ·), compared to unmodified PCNA [watanabe-2004-poleta-abstract]. The enhanced affinity facilitates polymerase exchange at the stalled fork, allowing TLS polymerases to incorporate nucleotides opposite damaged template bases. Although TLS polymerases can replicate past lesions, they lack the proofreading activity of replicative polymerases and are often error-prone, which explains why TLS is associated with damage-induced mutagenesis.

RAD18 participates in TLS polymerase recruitment through two complementary mechanisms [watanabe-2004-poleta-abstract]. First, monoubiquitinated PCNA provides a binding platform for PolΞ· through the polymerase's ubiquitin-binding zinc finger (UBZ) domain. Second, RAD18 directly interacts with PolΞ· through physical protein-protein contact, providing an additional layer of polymerase recruitment that is independent of PCNA modification. Cells lacking RAD18 fail to form PolΞ· nuclear foci following UV irradiation, demonstrating the essential nature of this E3 ligase for TLS initiation.

The regulation of RAD18-dependent TLS is tightly integrated with cell cycle progression through phosphorylation-dependent mechanisms [day-2010-phosphorylation-abstract]. The kinase Cdc7/DDK (Dbf4/Drf1-dependent Cdc7 kinase) phosphorylates RAD18 at a serine-rich "S box" region within its C-terminal domain, with S434 identified as a primary target. This phosphorylation is essential for efficient RAD18-PolΞ· association and the subsequent formation of PolΞ· foci at sites of replication fork stalling. The Cdc7-RAD18 regulatory axis provides a mechanism for coordinating DNA replication progression with postreplication repair.

Beyond TLS, DNA damage tolerance also operates through template switching (TS), an error-free pathway that uses the undamaged sister chromatid as a template for bypass synthesis. While RAD18-dependent PCNA monoubiquitination initiates TLS, this modification can be extended to K63-linked polyubiquitin chains by the Ubc13-Mms2/RAD5 (HLTF and SHPRH in humans) complex, which routes DDT toward the template switching pathway [hedglin-2015-regulation-abstract]. Thus, RAD18 functions at a critical decision point in choosing between error-prone and error-free damage tolerance mechanisms.

It is important to note that while PolΞ· is the most extensively studied TLS polymerase in the context of RAD18, monoubiquitinated PCNA also recruits other Y-family polymerases including PolΞΊ, PolΞΉ, and Rev1. Each TLS polymerase exhibits preference for bypass of specific types of DNA damage; for example, PolΞ· is specialized for bypass of UV-induced cyclobutane pyrimidine dimers (CPDs), while PolΞΊ preferentially bypasses benzo[a]pyrene adducts. These polymerases contain ubiquitin-binding domainsβ€”UBZ domains in PolΞ· and PolΞΊ, and UBM domains in PolΞΉ and Rev1β€”that mediate their interaction with monoubiquitinated PCNA [yang-2018-tumorigenesis-abstract].

Intriguingly, PolΞ· plays a unique non-catalytic role in promoting PCNA monoubiquitination itself [durando-2013-noncatalytic-abstract]. PolΞ· physically bridges RAD18 and PCNA through its C-terminal domain, facilitating their interaction independently of polymerase catalytic activity. Catalytically inactive PolΞ· mutants can still stimulate PCNA monoubiquitination to levels comparable to wild-type protein. This scaffolding function is specific to PolΞ· among Y-family polymerases, as PolΞΊ and PolΞΉ lack this capability. This non-catalytic role has important implications for understanding why xeroderma pigmentosum variant (XPV) patients, who carry mutations in PolΞ·, experience increased mutagenesisβ€”catalytically inactive PolΞ· can still promote recruitment of alternative, more error-prone TLS polymerases.

Domain Structure and Function

RAD18 is a 495 amino acid protein (in humans) containing several functionally distinct domains that coordinate its various activities in DNA damage response. The domain architecture includes an N-terminal RING finger domain, a ubiquitin-binding zinc finger (UBZ4) domain, a SAP (SAF-A/B, Acinus and PIAS) domain, and a C-terminal RAD6-binding domain (R6BD).

The RING finger domain (IPR001841) located at the N-terminus is the catalytic domain responsible for E3 ubiquitin ligase activity. This domain mediates the interaction with the E2 ubiquitin-conjugating enzyme RAD6 and facilitates ubiquitin transfer to substrates [notenboom-2007-domains-abstract]. Structural studies have determined the crystal structure of the homodimeric RAD18 RING domain (PDB: 2Y43), revealing a classical RING-RING dimer that dimerizes through helices adjacent to the RING domains. The RING domain can theoretically recruit two RAD6 molecules, but the full-length RAD18 homodimer binds only a single RAD6 molecule due to constraints imposed by other domains.

The UBZ4 domain (IPR006642) is a C2HC-type zinc finger that functions as a ubiquitin-binding module rather than a DNA-binding domain as initially proposed [notenboom-2007-domains-abstract]. NMR structural studies have determined the structure of the RAD18-UBZ domain both alone (PDB: 2MRF) and in complex with ubiquitin (PDB: 2MRE), revealing that it adopts a Ξ²1-Ξ²2-Ξ± fold and binds ubiquitin with micromolar affinity (Kd approximately 42 ΞΌM) [rizzo-2014-ubzstructure-abstract]. The RAD18-UBZ4 interacts with ubiquitin through both its Ξ±-helix and Ξ²1 strand, distinguishing it from the PolΞ·-UBZ3 domain that uses only the Ξ±-helix for binding. This ubiquitin-binding activity is critical for RAD18 accumulation at DNA damage sites, particularly through recognition of RNF8-generated ubiquitin chains at double-strand breaks [huang-2009-hrrrepair-abstract].

The SAP domain (IPR003034) provides DNA-binding activity, with preferential affinity for single-stranded DNA over double-stranded DNA (affinity approximately 1 ΞΌM for ssDNA) [notenboom-2007-domains-abstract]. Despite its DNA-binding capability, the SAP domain is not absolutely required for RAD18 accumulation at damage sites but appears crucial for PCNA ubiquitination and PolΞ· focus formation [nakajima-2006-replication-dependent-abstract]. The SAP domain may function by positioning the RAD18 complex appropriately at stalled replication forks where ssDNA is exposed.

The C-terminal RAD6-binding domain (R6BD) provides a second interaction interface with RAD6, distinct from the RING domain interaction [notenboom-2007-domains-abstract]. Importantly, this domain competes with ubiquitin for the backside binding site on RAD6, thereby suppressing polyubiquitin chain formation and ensuring monoubiquitination specificity [hibbert-2011-monoubiquitination-abstract].

Cellular Localization

RAD18 is predominantly a nuclear protein that displays dynamic localization patterns depending on cell cycle phase and DNA damage status. Under normal conditions, RAD18 shows diffuse nuclear distribution, but upon DNA damage, it rapidly accumulates at sites of DNA lesions, forming distinct nuclear foci [nakajima-2006-replication-dependent-abstract].

Following UV irradiation, RAD18 forms numerous nuclear foci (typically >80 per cell) that colocalize extensively with PCNA, consistent with its role at stalled replication forks [nakajima-2006-replication-dependent-abstract]. This UV-induced pattern is replication-dependent and relies on the SAP domain of RAD18. The colocalization with PCNA reflects RAD18's function in monoubiquitinating this replication clamp to initiate translesion synthesis.

In contrast, ionizing radiation (IR) induces a distinct pattern of RAD18 localization. X-ray-induced RAD18 foci are fewer in number (approximately 50 per cell) but larger than UV-induced foci, and they colocalize with Ξ³-H2AX rather than PCNA [nakajima-2006-replication-dependent-abstract]. This pattern reflects RAD18's replication-independent role in double-strand break repair. The IR-induced recruitment depends on the zinc finger domain and occurs through recognition of ubiquitin chains generated by the RNF8/UBC13 system at break sites [huang-2009-hrrrepair-abstract].

The mechanism of RAD18 recruitment differs between these two types of DNA damage. At stalled replication forks, RPA-coated single-stranded DNA serves as the recruitment signal, while at double-strand breaks, RAD18 is recruited through a signaling cascade involving H2AX phosphorylation, MDC1, RNF8, and ubiquitin chain formation. RAD18 colocalizes with chromatin-associated conjugated ubiquitin and ubiquitylated H2A throughout the cell cycle and following irradiation, indicating constitutive association with ubiquitin-modified chromatin.

Cell cycle-specific patterns have also been observed. RAD18 shows distinct localization during G1 phase when it participates in 53BP1-dependent DSB repair, and during S phase when it functions in replication-coupled DNA damage tolerance [watanabe-2009-53bp1-abstract]. Accumulation of RAD18 in nucleoli has been observed in late G2, dependent on its zinc finger domain.

Regulatory Mechanisms

The activity and localization of RAD18 are tightly controlled through multiple regulatory mechanisms including post-translational modifications, protein-protein interactions, and transcriptional regulation.

Phosphorylation represents a key regulatory mechanism for RAD18 function. Cdc7/DDK kinase phosphorylates RAD18 at serine residues within the S box region, with S434 being a major target [day-2010-phosphorylation-abstract]. This phosphorylation enhances RAD18's interaction with PolΞ· and is essential for efficient PolΞ· recruitment to stalled replication forks. The phosphorylation occurs both during normal S phase and is enhanced following UV damage through a Chk1-dependent pathway, integrating RAD18 function with DNA damage checkpoint signaling. Additionally, SLF1 recognizes RAD18 phosphorylated at S442 and S444 through its tandem BRCT domain, facilitating RAD18 accumulation at DNA breaks in post-replicative chromatin.

More recently, O-GlcNAcylation has emerged as another important modification regulating RAD18 function. This modification promotes both translesion DNA synthesis and homologous recombination repair. Importantly, abrogation of RAD18 O-GlcNAcylation limits Cdc7-dependent RAD18 phosphorylation at S434, establishing crosstalk between these two modifications. Reduced O-GlcNAcylation significantly decreases damage-induced PCNA monoubiquitination, impairs PolΞ· focus formation, and enhances UV sensitivity.

RAD18 is also subject to autoubiquitination at multiple lysine residues (K161, K261, K309, K318 in mouse RAD18), which regulates its stability and activity [notenboom-2007-domains-abstract]. Auto-ubiquitination mediated by RAD6 inhibits RAD18 recruitment to DNA breaks, providing a negative feedback mechanism.

Several accessory proteins regulate RAD18 activity at damaged sites. SIVA1 functions as a critical adaptor protein that constitutively interacts with PCNA and directs RAD18 to its substrate [han-2014-siva1-abstract]. SIVA1 binds RAD18 through domains separate from those used to bind PCNA, creating a bridging complex. Cells lacking SIVA1 phenocopy RAD18 deficiency with compromised PCNA monoubiquitination, defective PolΞ· recruitment, increased UV sensitivity, and elevated mutation frequencies.

Other proteins that regulate RAD18 function include NBS1 (mutated in Nijmegen breakage syndrome), which recruits RAD18 to sites of DNA damage through direct binding; Claspin and CHK1, which participate in checkpoint-dependent RAD18 regulation; and chromatin remodeling complexes including Ino80, RSC, and NuRD that modulate chromatin accessibility at damage sites [hedglin-2015-regulation-abstract].

Roles Beyond Translesion Synthesis

While RAD18 is best characterized for its function in translesion synthesis, accumulating evidence demonstrates its participation in additional DNA repair pathways, establishing it as a multifunctional coordinator of genome maintenance.

In double-strand break (DSB) repair, RAD18 plays distinct roles depending on cell cycle phase. During G1, RAD18 promotes DSB repair through a 53BP1-dependent mechanism [watanabe-2009-53bp1-abstract]. RAD18 directly associates with 53BP1 via its zinc finger domain and monoubiquitinates 53BP1 at K1268, enhancing 53BP1 chromatin retention at break sites. Rad18-null cells exhibit impaired DSB repair efficiency and reduced post-irradiation viability. This function appears to promote non-homologous end joining (NHEJ) repair.

During S and G2 phases, RAD18 participates in homologous recombination (HR) repair through a mechanism that involves direct interaction with RAD51C [huang-2009-hrrrepair-abstract]. Importantly, this HR function is independent of RAD18's E3 ligase activity and depends solely on its recruitment to damage sites. RAD18 localizes to DSBs through its zinc finger domain, which binds ubiquitin chains created by the RNF8/UBC13 complex, while the RING domain mediates RAD51C interaction. This reveals how RAD18 functions as a molecular bridge connecting DNA damage checkpoint signaling with repair processes.

RAD18 also plays a significant role in the Fanconi anemia (FA) pathway, which is essential for interstrand crosslink (ICL) repair [geng-2010-fanconianemia-abstract]. RAD18-mediated PCNA ubiquitination recruits FANCL, the E3 ligase of the FA core complex, to chromatin. Monoubiquitinated PCNA then stimulates FANCL-catalyzed monoubiquitination of the FANCI-FANCD2 complex, which is the critical activation step for ICL repair. This establishes PCNA as a regulatory hub coordinating TLS and FA pathway responses to DNA damage.

Beyond these pathway connections, RAD18 directly interacts with FANCD2 independently of the FA core complex and is required for efficient FANCD2 and FANCI chromatin loading [williams-2011-fancd2-abstract]. The E3 ligase activity of RAD18 is necessary for FANCD2 chromatin loading through a mechanism that appears independent of PCNA modification, suggesting additional direct roles for RAD18 in FA pathway regulation. RAD18-deficient cells show increased sensitivity to DNA crosslinking agents including mitomycin C and cisplatin.

Recent work has also implicated RAD18 in suppressing R-loop-mediated genome instability by promoting FANCD2 recruitment to difficult-to-replicate and R-loop-prone genomic sites. This function helps prevent transcription-replication conflicts, expanding RAD18's role as a guardian of genome stability.

Evolutionary Conservation

The RAD6-RAD18 pathway for PCNA modification represents an evolutionarily ancient DNA damage tolerance mechanism that is highly conserved across eukaryotes. The human RAD18 gene was identified through its homology to the Saccharomyces cerevisiae RAD18 gene, and the yeast pathway has served as a foundational model for understanding mammalian DNA damage tolerance [tateishi-2000-dysfunction-abstract].

Human RAD18 encodes a 495-amino acid protein that shares 20% sequence identity and 42% similarity with yeast Rad18, with particularly strong conservation in the functional domains including the RING finger and zinc finger motifs. The mouse ortholog (mRAD18Sc) is 509 amino acids and shows strong conservation with both yeast and human homologs, demonstrating preserved domain architecture across mammals [vanderlaan-2000-mrad18-abstract]. The conservation of the RING-zinc-finger structure and the interaction with RAD6 homologs indicates that the core biochemical mechanism of PCNA monoubiquitination has been maintained throughout eukaryotic evolution.

Functionally orthologous genes have been identified in diverse fungi including Neurospora crassa (uvs-2) and Aspergillus nidulans (nuvA), all sharing the characteristic zinc finger motifs and involvement in DNA repair. Notably, the Schizosaccharomyces pombe rad18 gene is not a true ortholog of S. cerevisiae RAD18 but instead belongs to the SMC family of proteins (the true ortholog is RHC18), illustrating the importance of functional rather than nomenclature-based comparisons.

The conservation of the RAD6-RAD18 pathway extends to the downstream signaling as well. PCNA monoubiquitination at K164, the recruitment of Y-family TLS polymerases, and the extension to K63-linked polyubiquitin chains for template switching are all conserved from yeast to humans, underscoring the fundamental importance of this pathway in maintaining genome stability across evolution.

Clinical Relevance and Role in Cancer

RAD18 has emerged as a significant factor in cancer biology through multiple mechanisms, reflecting its dual nature as both a genome maintenance factor and a potential contributor to mutagenesis [yang-2018-tumorigenesis-abstract]. The human RAD18 gene maps to chromosome 3p24-25, a region frequently deleted in lung, breast, ovarian, and testicular cancers, initially suggesting a tumor suppressor role [tateishi-2000-dysfunction-abstract].

However, the relationship between RAD18 and cancer is complex. RAD18 and the downstream Y-family TLS polymerases confer DNA damage tolerance at the expense of DNA replication fidelity, making them attractive candidate mediators of mutagenesis and carcinogenesis. Consistent with this, RAD18 is pathologically overexpressed in many cancer types including colorectal cancer, triple-negative breast cancer, and lung adenocarcinoma [yang-2018-tumorigenesis-abstract]. One mechanism of RAD18 overexpression involves increased protein stability through binding to MAGE-A4, a cancer/testis antigen that is normally absent in somatic cells but is aberrantly expressed in tumors.

Studies of RAD18 in colorectal cancer (CRC) have demonstrated that high RAD18 expression correlates with lymph node metastasis and poor prognosis. RAD18 overexpression increases the metastatic potential of CRC cells through activation of the epithelial-mesenchymal transition (EMT) pathway. In triple-negative breast cancer (TNBC), RAD18 is highly expressed and inversely related to patient prognosis, promoting cancer stem cell characteristics through the Hippo/YAP signaling pathway.

In vivo studies using mouse models have provided mechanistic insights into RAD18's role in shaping mutational landscapes [lou-2021-mutational-signatures-abstract]. Analysis of carcinogen-induced tumors revealed that Rad18-proficient tumors predominantly display COSMIC mutational signature 22, while Rad18-deficient tumors show features associated with homologous recombination defects (signature 3). Analysis of The Cancer Genome Atlas (TCGA) data demonstrates that RAD18 expression is strongly associated with high single nucleotide variant burdens across multiple human cancer types, suggesting RAD18 promotes mutagenesis in human cancers.

The role of RAD18 in drug resistance has also been documented. In osteosarcoma, RAD18 was identified as a determinant of doxorubicin sensitivity through genome-wide CRISPR screening. Rad18 knockout increased sensitivity to doxorubicin, while overexpression led to resistance, highlighting RAD18 as a potential therapeutic target for overcoming chemoresistance.

Paradoxically, RAD18 can also act as a tumor suppressor in specific contexts. In carcinogen-induced oral cancer models, Rad18 deficiency accelerated tumor onset, with Rad18-null tumors showing increased genomic instability and characteristic mutational patterns. This context-dependent activity reflects the balance between RAD18's role in maintaining genome stability through proper TLS and its contribution to mutagenesis through error-prone polymerase activity.

Open Questions

Despite substantial progress in understanding RAD18 function, several important questions remain:

  1. Substrate specificity determinants: While PCNA, 53BP1, and RFC2 have been identified as RAD18 substrates, the full spectrum of RAD18 targets remains incompletely characterized. Understanding how RAD18 achieves substrate selectivity in different cellular contexts requires further investigation.

  2. Coordination between pathways: RAD18 participates in TLS, HR, NHEJ, and FA pathways. How the cell coordinates these different activities of RAD18 and directs it toward specific pathways depending on damage type and cell cycle phase remains unclear.

  3. Regulatory integration: Multiple modifications regulate RAD18 (phosphorylation, O-GlcNAcylation, auto-ubiquitination), but how these modifications are integrated to produce context-appropriate responses is not fully understood.

  4. Tissue-specific functions: The observation that RAD18 maps to a region frequently deleted in various cancers raises questions about potential tissue-specific roles that may be relevant to tumor suppression.

  5. Structure of full-length complex: While structures of individual domains are available, a complete structural understanding of the RAD6-(RAD18)β‚‚-PCNA complex and how it achieves substrate monoubiquitination is lacking.

  6. Template switching coordination: How RAD18-dependent monoubiquitination is extended to polyubiquitin chains that promote template switching, and how the choice between TLS and TS is made, requires further mechanistic characterization.

  7. Alternative E3 ligases: CRL4-Cdt2 can also monoubiquitinate PCNA independently of RAD18 in proliferating cells. The relative contributions and coordination of these alternative pathways in different contexts remains to be determined.

References

  • [tateishi-2000-dysfunction-abstract] Tateishi S, Sakuraba Y, Masuyama S, Inoue H, Yamaizumi M. Dysfunction of human Rad18 results in defective postreplication repair and hypersensitivity to multiple mutagens. Proc Natl Acad Sci USA. 2000;97(14):7927-7932. PMID: 10884424. DOI: 10.1073/pnas.97.14.7927

  • [watanabe-2004-poleta-abstract] Watanabe K, Tateishi S, Kawasuji M, Tsurimoto T, Inoue H, Yamaizumi M. Rad18 guides poleta to replication stalling sites through physical interaction and PCNA monoubiquitination. EMBO J. 2004;23(19):3886-3896. PMID: 15359278. DOI: 10.1038/sj.emboj.7600383

  • [nakajima-2006-replication-dependent-abstract] Nakajima S, Lan L, Kanno S, Usami N, Kobayashi K, Mori M, Shiomi T, Yasui A. Replication-dependent and -independent responses of RAD18 to DNA damage in human cells. J Biol Chem. 2006;281(45):34687-34695. PMID: 16980296. DOI: 10.1074/jbc.M605545200

  • [notenboom-2007-domains-abstract] Notenboom V, Hibbert RG, van Rossum-Fikkert SE, Olsen JV, Mann M, Sixma TK. Functional characterization of Rad18 domains for Rad6, ubiquitin, DNA binding and PCNA modification. Nucleic Acids Res. 2007;35(17):5819-5830. PMID: 17720710. DOI: 10.1093/nar/gkm615

  • [watanabe-2009-53bp1-abstract] Watanabe K, Iwabuchi K, Sun J, Tsuji Y, Tani T, Tokunaga K, Date T, Hashimoto M, Yamaizumi M, Tateishi S. RAD18 promotes DNA double-strand break repair during G1 phase through chromatin retention of 53BP1. Nucleic Acids Res. 2009;37(7):2176-2193. PMID: 19228710. DOI: 10.1093/nar/gkp082

  • [huang-2009-hrrrepair-abstract] Huang J, Huen MSY, Kim H, Leung CCY, Glover JNM, Yu X, Chen J. RAD18 transmits DNA damage signaling to elicit homologous recombination repair. Nat Cell Biol. 2009;11(5):592-603. PMID: 19396164. DOI: 10.1038/ncb1865

  • [geng-2010-fanconianemia-abstract] Geng L, Huntoon CJ, Karnitz LM. RAD18-mediated ubiquitination of PCNA activates the Fanconi anemia DNA repair network. J Cell Biol. 2010;191(2):249-257. PMID: 20937699. DOI: 10.1083/jcb.201005101

  • [day-2010-phosphorylation-abstract] Day TA, Palle K, Barkley LR, Kakusho N, Zou Y, Tateishi S, Verreault A, Masai H, Vaziri C. Phosphorylated Rad18 directs DNA Polymerase Ξ· to sites of stalled replication. J Cell Biol. 2010;191(5):953-966. PMID: 21098111. DOI: 10.1083/jcb.201006043

  • [hibbert-2011-monoubiquitination-abstract] Hibbert RG, Huang A, Boelens R, Sixma TK. E3 ligase Rad18 promotes monoubiquitination rather than ubiquitin chain formation by E2 enzyme Rad6. Proc Natl Acad Sci USA. 2011;108(14):5590-5595. PMID: 21422291. DOI: 10.1073/pnas.1017516108

  • [williams-2011-fancd2-abstract] Williams SA, Longerich S, Sung P, Vaziri C, Kupfer GM. The E3 ubiquitin ligase RAD18 regulates ubiquitylation and chromatin loading of FANCD2 and FANCI. Blood. 2011;117(19):5078-5087. PMID: 21355096. DOI: 10.1182/blood-2010-10-311761

  • [masuda-2012-asymmetric-abstract] Masuda Y, Suzuki M, Kawai H, Suzuki F, Kamiya K. Asymmetric nature of two subunits of RAD18, a RING-type ubiquitin ligase E3, in the human RAD6A-RAD18 ternary complex. Nucleic Acids Res. 2012;40(3):1065-1076. PMID: 21967848. DOI: 10.1093/nar/gkr805

  • [rizzo-2014-ubzstructure-abstract] Rizzo AA, Salerno PE, Bezsonova I, Korzhnev DM. NMR structure of the human Rad18 zinc finger in complex with ubiquitin defines a class of UBZ domains in proteins linked to the DNA damage response. Biochemistry. 2014;53(37):5895-5906. PMID: 25162118. DOI: 10.1021/bi500823h

  • [han-2014-siva1-abstract] Han J, Liu T, Huen MSY, Hu L, Chen Z, Huang J. SIVA1 directs the E3 ubiquitin ligase RAD18 for PCNA monoubiquitination. J Cell Biol. 2014;205(6):811-827. PMID: 24958773. DOI: 10.1083/jcb.201311007

  • [hedglin-2015-regulation-abstract] Hedglin M, Benkovic SJ. Regulation of Rad6/Rad18 Activity During DNA Damage Tolerance. Annu Rev Biophys. 2015;44:207-228. PMID: 26098514. DOI: 10.1146/annurev-biophys-060414-033841

  • [vanderlaan-2000-mrad18-abstract] van der Laan R, Roest HP, Hoogerbrugge JW, Smit EM, Slater R, Baarends WM, Hoeijmakers JH, Grootegoed JA. Characterization of mRAD18Sc, a mouse homolog of the yeast postreplication repair gene RAD18. Genomics. 2000;69(1):86-94. PMID: 11013078. DOI: 10.1006/geno.2000.6220

  • [durando-2013-noncatalytic-abstract] Durando M, Tateishi S, Vaziri C. A non-catalytic role of DNA polymerase Ξ· in recruiting Rad18 and promoting PCNA monoubiquitination at stalled replication forks. Nucleic Acids Res. 2013;41(5):3079-3093. PMID: 23345618. DOI: 10.1093/nar/gkt016

  • [yang-2018-tumorigenesis-abstract] Yang Y, Gao Y, Zlatanou A, Tateishi S, Yurchenko V, Rogozin IB, Vaziri C. Diverse roles of RAD18 and Y-family DNA polymerases in tumorigenesis. Cell Cycle. 2018;17(7):833-843. PMID: 29683380. DOI: 10.1080/15384101.2018.1456296

  • [lou-2021-mutational-signatures-abstract] Lou J, Yang Y, Gu Q, Price BA, Qiu Y, Fedoriw Y, Desai S, Mose LE, Chen B, Tateishi S, Parker JS, Vaziri C, Wu D. Rad18 mediates specific mutational signatures and shapes the genomic landscape of carcinogen-induced tumors in vivo. NAR Cancer. 2021;3(1):zcaa037. PMID: 33447826. DOI: 10.1093/narcan/zcaa037

Citations

  1. day-2010-phosphorylation-abstract.md
  2. durando-2013-noncatalytic-abstract.md
  3. geng-2010-fanconianemia-abstract.md
  4. han-2014-siva1-abstract.md
  5. hedglin-2015-regulation-abstract.md
  6. hibbert-2011-monoubiquitination-abstract.md
  7. huang-2009-hrrrepair-abstract.md
  8. lou-2021-mutational-signatures-abstract.md
  9. masuda-2012-asymmetric-abstract.md
  10. nakajima-2006-replication-dependent-abstract.md
  11. notenboom-2007-domains-abstract.md
  12. rizzo-2014-ubzstructure-abstract.md
  13. tateishi-2000-dysfunction-abstract.md
  14. vanderlaan-2000-mrad18-abstract.md
  15. watanabe-2004-poleta-abstract.md
  16. watanabe-2009-53bp1-abstract.md
  17. williams-2011-fancd2-abstract.md
  18. yang-2018-tumorigenesis-abstract.md

Falcon

(RAD18-deep-research-falcon.md)
this with annotations you find in gene/protein databases, but these can be outdated or inaccurate. Falcon Edison Scientific Literature 26 citations 2025-12-27T01:31:11.469831

The research report should be a detailed narrative explaining the function, biological processes, and localization of the gene product. Citations should be given for all claims.

You should prioritize authoritative reviews and primary scientific literature when conducting research. You can supplement
this with annotations you find in gene/protein databases, but these can be outdated or inaccurate.

We are specifically interested in the primary function of the gene - for enzymes, what reaction is catalyzed, and what is the substrate specificity? For transporters, what is the substrate? For structural proteins or adapters, what is the broader structural role? For signaling molecules, what is the role in the pathway.

We are interested in where in or outside the cell the gene product carries out its function.

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Include evidence where possible. We are interested in both experimental evidence as well as inference from structure, evolution, or bioinformatic analysis. Precise studies should be prioritized over high-throughput, where available.

Comprehensive research report: Human RAD18 (UniProt Q9NS91)

Verification and identity
- Gene/protein: RAD18 (RNF73), human E3 ubiquitin-protein ligase; UniProt Q9NS91. Recent human studies consistently examine RAD18 as the principal E3 ligase catalyzing PCNA Lys164 monoubiquitination in DNA damage tolerance pathways, matching the UniProt description and domain architecture, with no conflicting gene symbol usage detected (ma2024rad18oglcnacylationpromotes pages 1-2, chen2024atrlimitsrad18mediated pages 1-2, khatib2024parp10promotesthe pages 1-2).

Key concepts and definitions
- Primary biochemical function: RAD18 is a RING-type E3 ubiquitin ligase that, with its E2 partner RAD6, catalyzes monoubiquitination of the replication clamp PCNA at Lys164, initiating translesion DNA synthesis (TLS) and coordinating downstream damage tolerance decisions. This modification recruits TLS polymerases (e.g., REV1/PolΞ·) and can be extended to K63-linked chains for template switching, linking to recombination-based bypass and fork protection (Oct 2023; Bioscience Reports; Jul 2024; Nature Communications) (xia2023implicationsofubiquitination pages 10-11, khatib2024parp10promotesthe pages 1-2). URLS: https://doi.org/10.1042/bsr20222591; https://doi.org/10.1038/s41467-024-50429-3.
- Core domains and roles: RAD18 contains a catalytic RING domain (E3 function), a UBZ domain that binds ubiquitin and contributes to damage-site targeting, a SAP domain implicated in DNA/chromatin binding, and a PCNA-interacting motif (PIP) recently mapped adjacent to Ser403; the PIP-like region mediates RAD18–PCNA interaction and is subject to regulation (May 2024; Cell Death & Disease; Mar 2024; EMBO Journal) (ma2024rad18oglcnacylationpromotes pages 1-2, chen2024atrlimitsrad18mediated pages 1-2). URLS: https://doi.org/10.1038/s41419-024-06700-y; https://doi.org/10.1038/s44318-024-00066-9.

Localization and pathway context
- Cellular localization: RAD18 accumulates at stalled replication forks and at RPA-coated ssDNA regions during replication stress; it is also recruited to nascent strand gaps where it ubiquitinates PCNA to enable TLS-mediated gap filling. RAD18’s activity influences replication fork stability, and at telomeres (ALT cells), ATR-modulated RAD18 activity controls PCNA ubiquitination to preserve telomere integrity (Mar 2024; EMBO Journal; Jul 2024; Nature Communications; Oct 2023; Bioscience Reports) (chen2024atrlimitsrad18mediated pages 1-2, khatib2024parp10promotesthe pages 1-2, xia2023implicationsofubiquitination pages 5-7). URLS: https://doi.org/10.1038/s44318-024-00066-9; https://doi.org/10.1038/s41467-024-50429-3; https://doi.org/10.1042/bsr20222591.
- Pathway roles: RAD18 is central to DNA damage tolerance (DDT). PCNA K164 monoubiquitination triggers TLS polymerase engagement; subsequent K63-linked polyubiquitination coordinates template switching and fork remodeling, which support fork stability and damage bypass. RAD18 also participates in crosstalk with the Fanconi anemia (FA) pathway (FANCD2/FANCI ubiquitination and chromatin loading) and HR-associated mechanisms, thereby shaping repair pathway choice during replication stress (Oct 2023; Bioscience Reports; Mar 2024; EMBO Journal; May 2024; Cell Death & Disease) (xia2023implicationsofubiquitination pages 10-11, chen2024atrlimitsrad18mediated pages 1-2, ma2024rad18oglcnacylationpromotes pages 1-2). URLS: https://doi.org/10.1042/bsr20222591; https://doi.org/10.1038/s44318-024-00066-9; https://doi.org/10.1038/s41419-024-06700-y.

Recent developments and latest research (priority 2023–2024)
- ATR constrains RAD18 activity at forks and telomeres: ATR phosphorylates RAD18 at Ser403 adjacent to a PIP motif, weakening RAD18–PCNA interaction and limiting PCNA monoubiquitination. This prevents excessive SLX4 accumulation at stalled forks and protects fork integrity; in ALT cells, this preserves telomere stability. ATR inhibition (VE‑821) or knockdown increases PCNA monoubiquitination after HU, aphidicolin, or UV (Mar 2024; EMBO Journal) (chen2024atrlimitsrad18mediated pages 1-2). URL: https://doi.org/10.1038/s44318-024-00066-9.
- O-GlcNAcylation tunes RAD18’s recruitment and activity: Human RAD18 is O-GlcNAcylated at Ser130/Ser164/Thr468. These modifications promote RAD18 accumulation at damage sites and enable CDC7-dependent RAD18 Ser434 phosphorylation, which supports damage-induced PCNA monoubiquitination, PolΞ· focus formation, and TLS efficiency. Mutating these sites (S130A/S164A/T468A) reduces PCNA monoubiquitination, impairs PolΞ· foci, and increases UV sensitivity; O-GlcNAcylation also enhances RAD18’s contribution to HR through RAD51C/ubiquitin interactions and RAD51 loading, reducing CPT hypersensitivity (May 2024; Cell Death & Disease) (ma2024rad18oglcnacylationpromotes pages 1-2). URL: https://doi.org/10.1038/s41419-024-06700-y.
- PARP10 recruits RAD18 to gaps for REV1-dependent filling: PARP10 interacts with RAD18 and recruits it to nascent ssDNA gaps, leading to PCNA monoubiquitination and REV1 recruitment for gap filling in G2. PARP10’s catalytic activity and PIP-box-mediated interaction with PCNA are required; in BRCA-deficient cells, PARP10 is hyperactive, and its inactivation increases gap accumulation and cytotoxicity (Jul 2024; Nature Communications) (khatib2024parp10promotesthe pages 1-2). URL: https://doi.org/10.1038/s41467-024-50429-3.
- Alternative E3 for PCNA in unperturbed replication: BRCA1/BARD1 ubiquitinates PCNA independently of RAD18 under unperturbed conditions to prevent ssDNA gaps and promote continuous DNA synthesis, indicating PCNA ubiquitination control extends beyond the canonical RAD18–RAD6 axis (May 2024; Nature Communications) (salaslloret2024brca1bard1ubiquitinatespcna pages 1-2). URL: https://doi.org/10.1038/s41467-024-48427-6.

Current applications and real-world implementations
- Therapeutic targeting of RAD18/RAD6 axis and associated regulators: Reviews highlight the RAD18–RAD6 pathway as a tractable therapeutic target for modulating DDT and replication fork stability. Overexpression of RAD18 is reported across several cancers and is linked to therapy resistance phenotypes; efforts include targeting E2/E3 interfaces and deubiquitinases such as USP1 that counteract PCNA-Ub (Oct 2023; Bioscience Reports) (xia2023implicationsofubiquitination pages 10-11, xia2023implicationsofubiquitination pages 18-19). URL: https://doi.org/10.1042/bsr20222591.
- Vulnerabilities in BRCA-deficient settings: The RAD18-dependent gap-filling axis (via PARP10→RAD18→PCNA-Ub→REV1) mitigates nascent strand gaps in BRCA-deficient cells; inhibition of PARP10 or disruption of RAD18 recruitment sensitizes these cells, suggesting combination strategies with DNA damaging agents (Jul 2024; Nature Communications) (khatib2024parp10promotesthe pages 1-2). URL: https://doi.org/10.1038/s41467-024-50429-3.

Expert opinions and authoritative analyses
- A 2023 expert review synthesizes how ubiquitination, including RAD18-mediated PCNA modification, orchestrates replication fork stabilization and DDT signaling, emphasizing translational opportunities in oncology by modulating E2/E3/DUB activities and repair-pathway crosstalk (Oct 2023; Bioscience Reports) (xia2023implicationsofubiquitination pages 10-11, xia2023implicationsofubiquitination pages 5-7, xia2023implicationsofubiquitination pages 18-19). URL: https://doi.org/10.1042/bsr20222591.
- Primary 2024 studies deliver mechanistic consensus: ATR acts as a brake on RAD18 at stalled forks and ALT telomeres; O-GlcNAc/PTM crosstalk tunes RAD18’s recruitment and function; and PCNA ubiquitination can be executed by BRCA1/BARD1 in the absence of stress, refocusing the field on the context-specific regulation of PCNA-Ub beyond the canonical RAD18 pathway (Mar–Jul 2024; EMBO Journal; Cell Death & Disease; Nature Communications) (chen2024atrlimitsrad18mediated pages 1-2, ma2024rad18oglcnacylationpromotes pages 1-2, khatib2024parp10promotesthe pages 1-2, salaslloret2024brca1bard1ubiquitinatespcna pages 1-2). URLS: https://doi.org/10.1038/s44318-024-00066-9; https://doi.org/10.1038/s41419-024-06700-y; https://doi.org/10.1038/s41467-024-50429-3; https://doi.org/10.1038/s41467-024-48427-6.

Relevant statistics and data from recent studies
- ATR inhibition elevates PCNA K164 monoubiquitination in multiple stress contexts (HU, aphidicolin, UV), consistent with ATR’s S403 phosphorylation limiting RAD18–PCNA binding (Mar 2024; EMBO Journal) (chen2024atrlimitsrad18mediated pages 1-2). URL: https://doi.org/10.1038/s44318-024-00066-9.
- Defined genotoxic conditions used for gap-induction and repair: PARP10β†’RAD18 axis tested under 0.4 mM hydroxyurea and 150 ΞΌM cisplatin; PARP10 catalytic activity and PCNA interaction are required for REV1 recruitment and gap filling (Jul 2024; Nature Communications) (khatib2024parp10promotesthe pages 1-2). URL: https://doi.org/10.1038/s41467-024-50429-3.
- RAD18 PTM mutants alter sensitivity and repair outputs: An O-GlcNAc-deficient RAD18 mutant (S130A/S164A/T468A) reduces damage-induced PCNA monoubiquitination, impairs PolΞ· focus formation, and increases cellular sensitivity to UV; O-GlcNAcylation promotes RAD18’s contribution to HR, lowering CPT hypersensitivity via improved RAD51 loading (May 2024; Cell Death & Disease) (ma2024rad18oglcnacylationpromotes pages 1-2). URL: https://doi.org/10.1038/s41419-024-06700-y.
- Cell-type specific roles in recombination control: RAD18 loss elevates hyper-recombination phenotypes (sister chromatid exchange, gene conversion) in some human cell lines (e.g., HCT116) and these effects are linked to defective PCNA K164 ubiquitination, underscoring context-specific RAD18 functions (Jan 2025; Biomolecules) (rogers2025celltypespecific pages 1-2). URL: https://doi.org/10.3390/biom15010150.

Mechanistic synthesis: substrate specificity and reaction
- Enzymatic reaction: RAD18 transfers ubiquitin from E2 RAD6 to PCNA (Lys164), predominantly forming mono-ubiquitinated PCNA (mUb-PCNA) that acts as a platform for TLS polymerases; RAD18 thereby controls the switch from replicative to specialized polymerases at damaged templates and in post-replicative gap filling (Oct 2023; Bioscience Reports; Jul 2024; Nature Communications) (xia2023implicationsofubiquitination pages 10-11, khatib2024parp10promotesthe pages 1-2). URLS: https://doi.org/10.1042/bsr20222591; https://doi.org/10.1038/s41467-024-50429-3.
- Recruitment logic: RAD18 is targeted to sites of replication stress by RPA-coated ssDNA and by adapter/regulator proteins such as PARP10. ATR signaling modulates RAD18–PCNA interaction via S403 phosphorylation to prevent over-ubiquitination and excessive SLX4 accumulation, preserving fork/telomere integrity in ALT contexts (Mar 2024; EMBO Journal; Jul 2024; Nature Communications) (chen2024atrlimitsrad18mediated pages 1-2, khatib2024parp10promotesthe pages 1-2). URLS: https://doi.org/10.1038/s44318-024-00066-9; https://doi.org/10.1038/s41467-024-50429-3.
- PTM crosstalk: O-GlcNAcylation of RAD18 (S130/S164/T468) facilitates subsequent CDC7-dependent S434 phosphorylation, supporting optimal PCNA monoubiquitination and efficient TLS/HR (May 2024; Cell Death & Disease) (ma2024rad18oglcnacylationpromotes pages 1-2). URL: https://doi.org/10.1038/s41419-024-06700-y.
- Alternative E3 activity on PCNA: In unperturbed replication, BRCA1/BARD1 can ubiquitinate PCNA independently of RAD18 to prevent replication-associated ssDNA gaps, indicating layered control of PCNA ubiquitination in different cellular contexts (May 2024; Nature Communications) (salaslloret2024brca1bard1ubiquitinatespcna pages 1-2). URL: https://doi.org/10.1038/s41467-024-48427-6.

Embedding: Evidence map
| Aspect | Key finding / definition | Mechanism / details | Evidence (Year; Journal) | URL |
|---|---|---:|---|---|
| Identity / organism | Human RAD18 (UniProt Q9NS91), E3 ubiquitin ligase involved in DNA damage tolerance | Member of RAD18 family; RING-type E3 ligase annotation (EC 2.3.2.27) | 2024; Cell Death & Disease; 2024; EMBO J (ma2024rad18oglcnacylationpromotes pages 1-2, chen2024atrlimitsrad18mediated pages 1-2) | https://doi.org/10.1038/s41419-024-06700-y, https://doi.org/10.1038/s44318-024-00066-9 |
| Domains (RING, UBZ, SAP, PIP) & roles | RING = catalytic E3 activity; UBZ = ubiquitin-binding/targeting to lesions; SAP = DNA/chromatin interactions; PIP-like motif adjacent to Ser403 mediates PCNA contact | Domain architecture guides recruitment to damage, ubiquitin recognition, and PCNA engagement (PIP adjacent to ATR-phosphorylated S403) | 2024; Cell Death & Disease; 2024; EMBO J (ma2024rad18oglcnacylationpromotes pages 1-2, chen2024atrlimitsrad18mediated pages 1-2) | https://doi.org/10.1038/s41419-024-06700-y, https://doi.org/10.1038/s44318-024-00066-9 |
| Enzymatic function | Catalyzes monoubiquitination of PCNA at Lys164 (with E2 RAD6) to initiate TLS; can influence FANCI/FANCD2 signalling | RAD18–RAD6 conjugates single ubiquitin onto PCNA K164 β†’ recruits Y-family TLS polymerases or supports extension to K63-linked chains for template switching | 2024; Nat Commun; 2023; Biosci Reports (khatib2024parp10promotesthe pages 1-2, xia2023implicationsofubiquitination pages 10-11) | https://doi.org/10.1038/s41467-024-50429-3, https://doi.org/10.1042/bsr20222591 |
| Recruitment / localization | Localizes to stalled forks and ssDNA regions coated by RPA; recruited to nascent-gap structures by adapter factors | Recruitment aided by adapter proteins (e.g., PARP10 recruits RAD18 to gaps); interplay with PCNA, RPA, and upstream sensors at forks; RAD18 activity regulated at telomeres/ALT | 2024; Nat Commun; 2024; EMBO J (khatib2024parp10promotesthe pages 1-2, chen2024atrlimitsrad18mediated pages 1-2) | https://doi.org/10.1038/s41467-024-50429-3, https://doi.org/10.1038/s44318-024-00066-9 |
| Pathway roles | Central regulator of DNA damage tolerance: TLS initiation, template switching, crosstalk with HR and fork stability mechanisms | mUb-PCNA (K164) promotes TLS polymerase recruitment; K63 extension/template switching connects to fork reversal and recombination-based bypass; RAD18 also impacts FA pathway ubiquitination and fork protection | 2023-2024; Biosci Reports; EMBO J; Cell Death & Disease (xia2023implicationsofubiquitination pages 10-11, chen2024atrlimitsrad18mediated pages 1-2, ma2024rad18oglcnacylationpromotes pages 1-2) | https://doi.org/10.1042/bsr20222591, https://doi.org/10.1038/s44318-024-00066-9, https://doi.org/10.1038/s41419-024-06700-y |
| Recent regulation (2023–2024) | Multiple PTMs and alternative E3s modulate PCNA ubiquitination and RAD18 activity: ATR phosphorylation (S403) limits RAD18–PCNA binding; O-GlcNAcylation (S130/S164/T468) promotes RAD18 accumulation; PARP10 recruits RAD18 to gaps; BRCA1/BARD1 can ubiquitinate PCNA in unperturbed replication independently of RAD18 | ATR phosphorylates S403 adjacent to a PIP motif to restrict RAD18–PCNA interaction; O-GlcNAcylation enables CDC7-dependent S434 phosphorylation β†’ supports PCNA mUb; PARP10β†’RAD18 recruits REV1 for gap-filling; BRCA1/BARD1 adds another layer of PCNA ubiquitination control | 2024; EMBO J; 2024; Cell Death & Disease; 2024; Nat Commun; 2024; Nat Commun (chen2024atrlimitsrad18mediated pages 1-2, ma2024rad18oglcnacylationpromotes pages 1-2, khatib2024parp10promotesthe pages 1-2, salaslloret2024brca1bard1ubiquitinatespcna pages 1-2) | https://doi.org/10.1038/s44318-024-00066-9, https://doi.org/10.1038/s41419-024-06700-y, https://doi.org/10.1038/s41467-024-50429-3, https://doi.org/10.1038/s41467-024-48427-6 |
| Disease / therapy relevance | RAD18 is frequently overexpressed in diverse cancers and implicated in chemoresistance; RAD18/RAD6 axis is a therapeutic target to sensitize tumours; BRCA-deficient contexts depend on gap-filling pathways involving RAD18 | Overexpression correlates with progression and therapy resistance (e.g., cisplatin resistance, TNBC RAD6/RAD18 signalling); PARP10 inhibition or RAD6/RAD18 targeting sensitizes BRCA-deficient or gap-prone tumours | 2023-2024; Biosci Reports; 2024; Nat Commun (xia2023implicationsofubiquitination pages 10-11, khatib2024parp10promotesthe pages 1-2, salaslloret2024brca1bard1ubiquitinatespcna pages 1-2) | https://doi.org/10.1042/bsr20222591, https://doi.org/10.1038/s41467-024-50429-3, https://doi.org/10.1038/s41467-024-48427-6 |
| Quantitative / experimental highlights | ATR inhibition increases PCNA monoubiquitination; RAD18 PTM mutants reduce damage-induced PCNA mUb and increase UV/CPT sensitivity; PARP10β†’RAD18 recruitment increases REV1-dependent gap filling under cisplatin/HU | Chen 2024: ATR inhibition (VE-821) or knockdown β†’ elevated PCNA-Ub after HU/APH/UV; Ma 2024: RAD18 (3A) PTM mutant β†’ reduced PCNA mUb, impaired PolΞ· foci, increased UV sensitivity; Khatib 2024: PARP10 catalytic requirement for REV1 recruitment and gap filling under defined genotoxin doses (cisplatin, HU) | 2024; EMBO J; 2024; Cell Death & Disease; 2024; Nat Commun (chen2024atrlimitsrad18mediated pages 1-2, ma2024rad18oglcnacylationpromotes pages 1-2, khatib2024parp10promotesthe pages 1-2) | https://doi.org/10.1038/s44318-024-00066-9, https://doi.org/10.1038/s41419-024-06700-y, https://doi.org/10.1038/s41467-024-50429-3 |

Table: A compact evidence map (2023–2024) summarizing RAD18 identity, domains, enzymatic activity, recruitment, pathway roles, recent regulatory mechanisms, disease relevance, and key experimental highlights with source links for rapid reference.

Notes on ambiguity and domain alignment
- The literature surveyed explicitly studies human RAD18 and is consistent with the UniProt entry (RING-type E3 ligase; UBZ, SAP domains; and a functional PIP motif proximal to S403). No conflicting gene symbol usage or organism mismatch was found in recent sources (ma2024rad18oglcnacylationpromotes pages 1-2, chen2024atrlimitsrad18mediated pages 1-2, khatib2024parp10promotesthe pages 1-2).

References (URLs and dates)
- Ma et al., Cell Death & Disease, May 2024. RAD18 O-GlcNAcylation promotes TLS and HR. https://doi.org/10.1038/s41419-024-06700-y (ma2024rad18oglcnacylationpromotes pages 1-2).
- Xia et al., Bioscience Reports, Oct 2023. Ubiquitination and replication fork stability in cancer therapy; RAD18–RAD6 axis overview, cancer relevance. https://doi.org/10.1042/bsr20222591 (xia2023implicationsofubiquitination pages 10-11, xia2023implicationsofubiquitination pages 5-7, xia2023implicationsofubiquitination pages 18-19).
- Chen et al., EMBO Journal, Mar 2024. ATR limits RAD18-mediated PCNA monoubiquitination; S403 phosphorylation near PIP. https://doi.org/10.1038/s44318-024-00066-9 (chen2024atrlimitsrad18mediated pages 1-2).
- Khatib et al., Nature Communications, Jul 2024. PARP10 recruits RAD18 to nascent gaps β†’ PCNA-Ub β†’ REV1. https://doi.org/10.1038/s41467-024-50429-3 (khatib2024parp10promotesthe pages 1-2).
- Salas-Lloret et al., Nature Communications, May 2024. BRCA1/BARD1 ubiquitinates PCNA independently of RAD18 in unperturbed replication. https://doi.org/10.1038/s41467-024-48427-6 (salaslloret2024brca1bard1ubiquitinatespcna pages 1-2).
- Rogers et al., Biomolecules, Jan 2025. Cell type-specific suppression of hyper-recombination by RAD18 linked to PCNA K164 ubiquitination. https://doi.org/10.3390/biom15010150 (rogers2025celltypespecific pages 1-2).

References

  1. (ma2024rad18oglcnacylationpromotes pages 1-2): Xiaolu Ma, Hui Fu, Chenyi Sun, Wei Wu, Wenya Hou, Zibin Zhou, Hui Zheng, Yifei Gong, Honglin Wu, Junying Qin, Huiqiang Lou, Jing Li, Tie-Shan Tang, and Caixia Guo. Rad18 o-glcnacylation promotes translesion dna synthesis and homologous recombination repair. Cell Death & Disease, May 2024. URL: https://doi.org/10.1038/s41419-024-06700-y, doi:10.1038/s41419-024-06700-y. This article has 9 citations and is from a peer-reviewed journal.

  2. (chen2024atrlimitsrad18mediated pages 1-2): Siyuan Chen, Chen Pan, Jun Huang, and Tingting Liu. Atr limits rad18-mediated pcna monoubiquitination to preserve replication fork and telomerase-independent telomere stability. The EMBO Journal, 43:1301-1324, Mar 2024. URL: https://doi.org/10.1038/s44318-024-00066-9, doi:10.1038/s44318-024-00066-9. This article has 12 citations.

  3. (khatib2024parp10promotesthe pages 1-2): Jude B. Khatib, Ashna Dhoonmoon, George-Lucian Moldovan, and Claudia M. Nicolae. Parp10 promotes the repair of nascent strand dna gaps through rad18 mediated translesion synthesis. Nature Communications, Jul 2024. URL: https://doi.org/10.1038/s41467-024-50429-3, doi:10.1038/s41467-024-50429-3. This article has 14 citations and is from a highest quality peer-reviewed journal.

  4. (xia2023implicationsofubiquitination pages 10-11): Donghui Xia, Xuefei Zhu, Ying Wang, Peng Gong, Hong-Shu Su, and Xingzhi Xu. Implications of ubiquitination and the maintenance of replication fork stability in cancer therapy. Bioscience Reports, Oct 2023. URL: https://doi.org/10.1042/bsr20222591, doi:10.1042/bsr20222591. This article has 2 citations and is from a peer-reviewed journal.

  5. (xia2023implicationsofubiquitination pages 5-7): Donghui Xia, Xuefei Zhu, Ying Wang, Peng Gong, Hong-Shu Su, and Xingzhi Xu. Implications of ubiquitination and the maintenance of replication fork stability in cancer therapy. Bioscience Reports, Oct 2023. URL: https://doi.org/10.1042/bsr20222591, doi:10.1042/bsr20222591. This article has 2 citations and is from a peer-reviewed journal.

  6. (salaslloret2024brca1bard1ubiquitinatespcna pages 1-2): Daniel Salas-Lloret, NΓ©stor GarcΓ­a-RodrΓ­guez, Emily Soto-Hidalgo, Lourdes GonzΓ‘lez-Vinceiro, Carmen Espejo-Serrano, Lisanne Giebel, MarΓ­a Luisa Mateos-MartΓ­n, Arnoud H. de Ru, Peter A. van Veelen, Pablo Huertas, Alfred C. O. Vertegaal, and RomΓ‘n GonzΓ‘lez-Prieto. Brca1/bard1 ubiquitinates pcna in unperturbed conditions to promote continuous dna synthesis. Nature Communications, May 2024. URL: https://doi.org/10.1038/s41467-024-48427-6, doi:10.1038/s41467-024-48427-6. This article has 14 citations and is from a highest quality peer-reviewed journal.

  7. (xia2023implicationsofubiquitination pages 18-19): Donghui Xia, Xuefei Zhu, Ying Wang, Peng Gong, Hong-Shu Su, and Xingzhi Xu. Implications of ubiquitination and the maintenance of replication fork stability in cancer therapy. Bioscience Reports, Oct 2023. URL: https://doi.org/10.1042/bsr20222591, doi:10.1042/bsr20222591. This article has 2 citations and is from a peer-reviewed journal.

  8. (rogers2025celltypespecific pages 1-2): Colette B. Rogers, Wendy Leung, Ryan M. Baxley, Rachel E. Kram, Liangjun Wang, Joseph P. Buytendorp, Khoi Le, David A. Largaespada, Eric A. Hendrickson, and Anja-Katrin Bielinsky. Cell type specific suppression of hyper-recombination by human rad18 is linked to proliferating cell nuclear antigen k164 ubiquitination. Biomolecules, 15:150, Jan 2025. URL: https://doi.org/10.3390/biom15010150, doi:10.3390/biom15010150. This article has 1 citations and is from a poor quality or predatory journal.

Citations

  1. rogers2025celltypespecific pages 1-2
  2. xia2023implicationsofubiquitination pages 10-11
  3. xia2023implicationsofubiquitination pages 5-7
  4. xia2023implicationsofubiquitination pages 18-19
  5. https://doi.org/10.1042/bsr20222591;
  6. https://doi.org/10.1038/s41467-024-50429-3.
  7. https://doi.org/10.1038/s41419-024-06700-y;
  8. https://doi.org/10.1038/s44318-024-00066-9.
  9. https://doi.org/10.1038/s44318-024-00066-9;
  10. https://doi.org/10.1038/s41467-024-50429-3;
  11. https://doi.org/10.1042/bsr20222591.
  12. https://doi.org/10.1038/s41419-024-06700-y.
  13. https://doi.org/10.1038/s41467-024-48427-6.
  14. https://doi.org/10.3390/biom15010150.
  15. https://doi.org/10.1038/s41419-024-06700-y,
  16. https://doi.org/10.1038/s44318-024-00066-9
  17. https://doi.org/10.1038/s41467-024-50429-3,
  18. https://doi.org/10.1042/bsr20222591
  19. https://doi.org/10.1042/bsr20222591,
  20. https://doi.org/10.1038/s44318-024-00066-9,
  21. https://doi.org/10.1038/s41419-024-06700-y
  22. https://doi.org/10.1038/s41467-024-48427-6
  23. https://doi.org/10.1038/s41467-024-50429-3
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  26. https://doi.org/10.3390/biom15010150,

OpenAI

(RAD18-deep-research-openai.md)
RAD18 – Overview and Key Functions OpenAI o3-deep-research-2025-06-26 125 citations 2025-12-27T17:50:44.337046

RAD18 – Overview and Key Functions

RAD18 is a human gene encoding an E3 ubiquitin-protein ligase critical for DNA damage tolerance and repair. The RAD18 protein (UniProt Q9NS91) contains a RING-finger domain that confers E3 ligase activity, a SAP domain for DNA binding, and a ubiquitin-binding zinc-finger (UBZ) domain (www.nature.com) (pmc.ncbi.nlm.nih.gov). These domains enable RAD18 to recognize stalled DNA replication sites and coordinate the post-replication repair (PRR) pathway. RAD18 is conserved from yeast to humans and interacts with the E2 ubiquitin-conjugating enzyme RAD6 (also known as UBE2A/B in humans) (www.ncbi.nlm.nih.gov). Together, the RAD18–RAD6 complex monoubiquitinates proliferating cell nuclear antigen (PCNA) on Lysine-164 of PCNA (www.nature.com). PCNA is a DNA-sliding clamp and a master coordinator of replication and repair proteins at replication forks (pmc.ncbi.nlm.nih.gov). By tagging PCNA with ubiquitin, RAD18 acts as a molecular switch that prevents replication fork collapse, allowing cells to tolerate DNA damage during S phase (pmc.ncbi.nlm.nih.gov). This post-replication β€œdamage tolerance” mechanism is distinct from direct DNA repair: rather than immediately fixing a DNA lesion, RAD18-mediated PCNA ubiquitination permits DNA synthesis to continue past the lesion, avoiding deadly fork stalling (pmc.ncbi.nlm.nih.gov).

Role in DNA Damage Tolerance – Translesion Synthesis and Template Switching

Translesion DNA Synthesis (TLS): The primary function of RAD18 is to trigger TLS, a process by which specialized DNA polymerases replicate across damaged DNA templates. Upon DNA damage (e.g. UV-induced lesions), RAD18-RAD6 adds a single ubiquitin to PCNA (monoubiquitination), which creates a docking signal for Y-family TLS polymerases such as PolΞ· (eta) and PolΞΊ (kappa) (www.nature.com) (www.nature.com). These polymerases have low-fidelity but can accommodate distorted DNA bases, allowing replication to bypass lesions (www.nature.com). TLS is error-prone, often introducing mutations, but it is vital for avoiding acute replication failure. For example, cells lacking RAD18 cannot ubiquitinate PCNA after UV damage and fail to recruit PolΞ·, leading to stalled replication and hypersensitivity to UV (www.ncbi.nlm.nih.gov) (www.nature.com). A landmark study in yeast first linked RAD6–RAD18 to PCNA ubiquitination as the key step in DNA damage tolerance (pmc.ncbi.nlm.nih.gov), a finding later confirmed in human cells (www.nature.com). In human fibroblasts, RAD18 knockouts display defective replication on UV-damaged templates and increased chromosomal breaks, underscoring RAD18’s role in maintaining fork progression (www.ncbi.nlm.nih.gov). Consistently, RAD18-deficient mouse cells show elevated genomic instability and mutagen sensitivity (pmc.ncbi.nlm.nih.gov).

Template Switching (Error-Free PRR): In addition to TLS, RAD18-initiated PCNA ubiquitination can be channeled into an error-free damage bypass pathway. Monoubiquitin on PCNA can be extended into a Lys-63–linked polyubiquitin chain by other E3 ligases (in yeast, Rad5; in human, HLTF and SHPRH) (www.nature.com). This polyubiquitinated PCNA promotes a template switching mechanism, where the replication machinery bypasses the lesion by using the newly synthesized sister chromatid as a template instead of the damaged strand. Template switching avoids mutations and complements the TLS pathway. RAD18 is required for this process as the initiator of PCNA ubiquitination, even though the extension to polyubiquitin involves additional factors (www.nature.com). Through TLS and template switching, RAD18 safeguards replication: it allows cells to tolerate DNA lesions during S phase, deferring repair to after replication. A 2024 report in Nucleic Acids Research succinctly stated that RAD18 β€œprevents replication fork collapse by promoting DNA translesion synthesis and template switching,” highlighting its dual role in these tolerance pathways (pmc.ncbi.nlm.nih.gov).

Molecular Mechanism and Interactions

PCNA Ubiquitination Reaction: RAD18 functions as a RING-type E3 ligase that works with the E2 enzyme RAD6. RAD18 directly binds RAD6 via a conserved RING/Rad6-binding domain and facilitates transfer of ubiquitin from RAD6 to PCNA (pubmed.ncbi.nlm.nih.gov). Notably, human RAD18 specifically ubiquitinates PCNA at K164, and this modification is absolutely dependent on RAD18-RAD6 in vivo (www.nature.com). In biochemical assays, the RAD18/RAD6 complex predominantly catalyzes monoubiquitination rather than polyubiquitin chain formation (pubmed.ncbi.nlm.nih.gov). Structural studies indicate RAD18 likely forms a homo-dimer and encircles DNA together with PCNA and RAD6, ensuring ubiquitin is attached to PCNA’s DNA-bound form (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). RAD18 contains a SAP domain (a DNA-binding motif) that preferentially binds single-stranded DNA, helping target the ligase to stalled replication forks where stretches of single-stranded DNA accumulate (pmc.ncbi.nlm.nih.gov). This targeting is enhanced by RAD18’s UBZ domain, which can bind ubiquitin β€” a recent study showed RAD18’s UBZ domain recognizes ubiquitinated chromatin marks at damage sites (pmc.ncbi.nlm.nih.gov). Indeed, recruitment of RAD18 to sites of stalled replication involves RPA-coated ssDNA and possibly pre-existing ubiquitinated proteins. For example, both ATR kinase activation and RAD18 loading are triggered by RPA-ssDNA, suggesting RAD18 scans replication protein A filaments for fork distress signals (www.embopress.org). Once localized, RAD18 ubiquitinates PCNA, which in turn attracts TLS polymerases that also carry ubiquitin-binding motifs (UBM/UBZ in PolΞ·, PolΞΊ) (www.nature.com).

Key Interactions: Beyond PCNA and RAD6, RAD18 interacts with multiple genome maintenance proteins. It physically associates with REV1/PolΞ· in cells to facilitate polymerase switch during TLS (www.nature.com). Intriguingly, RAD18 also binds the recombination factor RAD51C, a paralog of RAD51, and helps localize RAD51C to DNA breaks (www.nature.com) (www.nature.com). This suggests RAD18 serves as a hub connecting replication stress tolerance to homologous recombination (HR) repair. Regulatory proteins modulate RAD18’s activity via binding: for instance, the MAGEA4 oncoprotein (a cancer-testis antigen) binds directly to RAD18’s C-terminal domain. A 2024 EMBO Journal study reported that MAGEA4 docking on RAD18 partially displaces RAD6 and inhibits RAD18’s auto-ubiquitination, thereby stabilizing the RAD18 protein (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). Normally, RAD18 can undergo autoubiquitination (tags itself for degradation to turn off its signal), but MAGEA4 binding protects RAD18 from self-degradation (pmc.ncbi.nlm.nih.gov). This interaction enhances RAD18’s TLS activity and is thought to encourage error-prone DNA synthesis in cancer cells overexpressing MAGEA4 (pmc.ncbi.nlm.nih.gov). In healthy tissue, RAD18 and MAGEA4 are both highly expressed in testes and during spermatogenesis (pmc.ncbi.nlm.nih.gov), hinting that this regulatory mechanism may operate in germ cells. Aberrant MAGEA4 expression in tumors effectively β€œhijacks” RAD18, keeping it active even without exogenous DNA damage, which can exacerbate genomic instability (pmc.ncbi.nlm.nih.gov). The RAD18–MAGEA4 interface is now being explored as a potential drug target to block TLS in cancers (pmc.ncbi.nlm.nih.gov).

Subcellular Localization and Regulation

Localization: Consistent with its role in DNA replication and repair, RAD18 is predominantly a nuclear protein. Immunohistochemistry data show RAD18 has selective nuclear expression in proliferating cell types – for example, in germinal center B-cells and spermatogonia in testis, RAD18 is strongly nuclear (www.proteinatlas.org). In cell culture, RAD18 relocalizes to nuclear foci upon DNA damage. These foci often colocalize with replication fork markers such as PCNA. A study of gastric cancer tissues confirmed that RAD18 protein is mainly detected in the nucleus of tumor cells (pubmed.ncbi.nlm.nih.gov). RAD18 does not have a classic nuclear localization sequence, but its binding partners (PCNA, RPA, etc.) and DNA-binding SAP domain concentrate it in the nucleus. Notably, RAD18 can shuttle to sites of double-strand breaks and stalled forks as needed. For example, after UV irradiation or replication stress, RAD18 accumulates at damage sites in an RPA- and PCNA-dependent manner (www.embopress.org). RAD18’s PIP motif (PCNA-interacting peptide) near its C-terminus also contributes to binding PCNA directly (www.embopress.org). Recent research (EMBO J, 2024) identified that the ATR kinase phosphorylates RAD18 at Ser403, adjacent to this PIP motif, which weakens RAD18’s interaction with PCNA (www.embopress.org). This phosphorylation by ATR is a key regulatory mechanism to restrict RAD18 activity during replication stress (www.embopress.org). By limiting how tightly RAD18 binds PCNA, ATR prevents excessive PCNA ubiquitination. This is physiologically important, as unchecked RAD18 activity can lead to aberrant processing of replication forks (discussed below). In summary, RAD18 is constitutively nuclear in cycling cells and dynamically enriched at DNA lesions, with its localization and activity finely tuned by cell-cycle checkpoints.

Post-translational Regulation: Cells tightly regulate RAD18 through modifications to ensure it acts at the right time and place. ATR-mediated phosphorylation is one such control: upon replication stress, ATR phosphorylates RAD18 (Ser403), causing RAD18 to release PCNA and thus limiting PCNA monoubiquitination (www.embopress.org). Functionally, this prevents an overactivation of the TLS pathway. A 2024 study demonstrated that inhibiting ATR led to excessive RAD18-dependent PCNA ubiquitination and consequent replication fork breakage – an outcome that could be rescued by RAD18 knockdown or a PCNA-K164R (non-ubiquitinable) mutant (www.embopress.org) (www.embopress.org). Thus, ATR acts as a brake on RAD18 to preserve replication fork stability (www.embopress.org) (www.embopress.org). Another layer of regulation is O-GlcNAcylation (O-linked N-acetylglucosamine modification) of RAD18. Emerging evidence (Cell Death & Disease, 2024) indicates RAD18 is modified by O-GlcNAc at multiple residues (Ser130, Ser164, Thr468), mediated by the OGT enzyme that localizes to DNA damage sites (www.nature.com) (www.nature.com). Loss of RAD18’s O-GlcNAc modification (by mutating those sites) impairs its recruitment to damaged DNA and reduces its ability to ubiquitinate PCNA (www.nature.com). Mechanistically, O-GlcNAcylation of RAD18 was required for efficient RAD18 phosphorylation at Ser434 by CDC7 kinase, which in turn promotes PCNA ubiquitination and PolΞ· focus formation (www.nature.com). Cells expressing an O-GlcNAc-deficient RAD18 mutant showed reduced HR repair and heightened sensitivity to DNA damage (www.nature.com). Therefore, O-GlcNAcylation positively regulates RAD18, enhancing both TLS and homologous recombination functions. RAD18 is also subject to autoubiquitination, as mentioned earlier. Autoubiquitination typically targets RAD18 for proteasomal degradation, serving as a negative feedback to turn off PRR once lesions are bypassed (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). Interactions with proteins like MAGEA4 that suppress autoubiquitination will prolong RAD18’s half-life. In summary, phosphorylation (ATR), glycosylation (O-GlcNAc), and self-ubiquitination of RAD18 all integrate to modulate the timing and intensity of RAD18’s activity in the DNA damage response.

Biological Processes and Pathways Involving RAD18

Post-Replication Repair (PRR) Pathway: RAD18 is a central player in the PRR pathway, also known as the DNA damage tolerance pathway. This pathway comes into play when replication forks encounter DNA lesions that cannot be immediately repaired. Rather than stalling indefinitely, PRR allows forks to bypass lesions, and repair is handled after DNA replication. RAD18’s ubiquitination of PCNA is the molecular trigger for PRR (pmc.ncbi.nlm.nih.gov). Depending on context, RAD18-mediated PCNA ubiquitination can initiate error-prone TLS or be coupled to error-free template switching. The importance of RAD18 in PRR is illustrated by the Rad18 knockout phenotype: RAD18-null mouse embryonic stem cells and knockout mice exhibit defective post-replication repair, evidenced by accumulation of daughter-strand gaps behind replication forks and elevated sensitivity to UV, methylating agents, and other mutagens (pmc.ncbi.nlm.nih.gov). In S. cerevisiae, rad18 mutants were first discovered for their inability to survive DNA damage despite intact excision repair, defining the post-replication repair pathway. Human RAD18 restores post-replication repair when expressed in rad18-deficient yeast (pmc.ncbi.nlm.nih.gov), highlighting the pathway’s conservation. RAD18 also interacts with the Fanconi Anemia (FA) pathway, which is another post-replication repair mechanism especially for DNA interstrand crosslinks. A recent study (PLoS Genetics, 2022) found that RAD18 helps recruit the Fanconi anemia protein FANCD2 to sites of transcription-replication conflicts (pmc.ncbi.nlm.nih.gov). In RAD18-deficient human cells, R-loop structures (RNA–DNA hybrids) accumulate, leading to replication stress and double-strand breaks, partly because FANCD2 fails to localize to resolve these R-loops (pmc.ncbi.nlm.nih.gov). RAD18 activity was shown to be critical for activating FANCD2 under replication stress caused by either transcription blockage or mild replication inhibitors (pmc.ncbi.nlm.nih.gov). Thus, RAD18 links standard PRR (PCNA ubiquitination) with the FA pathway to protect stalled forks from transcriptional interference. This underscores a broader role for RAD18: it’s not only guarding against exogenous DNA damage like UV, but also against endogenous stresses such as hard-to-replicate sequences and R-loops (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov).

Homologous Recombination (HR) and Double-Strand Break Repair: Although traditionally associated with replication lesions, RAD18 has emerging roles in double-strand break (DSB) repair, particularly in promoting HR. In the context of a one-ended DSB arising at a collapsed replication fork, RAD18 appears to channel repair toward HR (error-free repair using a sister chromatid) rather than non-homologous end joining (NHEJ). In mid-2024, Palek et al. reported that RAD18 is actively recruited to DSBs in post-replicative chromatin by recognizing ubiquitylated histone H2A marks (pmc.ncbi.nlm.nih.gov). Specifically, ubiquitination of histone H2A at K15 (placed by upstream DNA damage response E3s like RNF168) creates a binding site for RAD18’s UBZ domain (pmc.ncbi.nlm.nih.gov). RAD18’s presence at breaks then antagonizes 53BP1 loading (pmc.ncbi.nlm.nih.gov). 53BP1 is a factor that favors NHEJ and blocks DNA end resection; by limiting 53BP1 accumulation, RAD18 tilts the balance toward resection and homologous recombination. Using super-resolution microscopy, RAD18 was seen localizing adjacent to DSB sites and confining 53BP1 to peripheral chromatin domains around the break (pmc.ncbi.nlm.nih.gov). Mechanistically, RAD18’s effect required cooperation with SLF1 (SCAF-like factor 1), which helps target RAD18 to newly replicated chromatin marked by unmethylated H4K20 (H4K20me0 is a signature of post-replicative chromatin) (pubmed.ncbi.nlm.nih.gov) (pubmed.ncbi.nlm.nih.gov). Intriguingly, RAD18’s own ubiquitin ligase activity is auto-regulated at DSBs: if RAD18 autoubiquitinates itself (with RAD6’s help), its recruitment to breaks is inhibited (pmc.ncbi.nlm.nih.gov). By preventing self-ubiquitination (for example, via SLF1 or MAGEA4 as discussed), RAD18 can persist at damage sites and promote HR repair. Supporting this model, mutations in RAD18 found in some cancer patients impaired RAD18’s recruitment to DSBs and were associated with genomic instability (www.sciencedirect.com) (pubmed.ncbi.nlm.nih.gov). In summary, RAD18 extends its influence beyond replication forks to the realm of DSB repair: it helps decide the repair pathway choice by favoring homologous recombination in replicating cells, thereby preventing toxic misrepair.

Replication Stress and Fork Rescue: Oncogene activation and other intrinsic stressors often cause replication fork stalling or slowing, known as replication stress. RAD18 has been identified as a key factor that cancer cells exploit to survive high levels of replication stress. A notable study (J. Cell Biol., 2017) showed that RAD18 and PolΞΊ enable tolerance of oncogene-induced replication stress, such as that caused by Cyclin E overexpression (pmc.ncbi.nlm.nih.gov). RAD18-deficient cells fail to resolve stalled forks efficiently and undergo lethal fork collapse when driven into unscheduled replication by oncogenic signals (pmc.ncbi.nlm.nih.gov). In line with this, cells require RAD18 to recover from prolonged S-phase checkpoint arrest (pmc.ncbi.nlm.nih.gov). Recent evidence also points to RAD18’s role in alternative replication rescue pathways like break-induced replication (BIR) (pmc.ncbi.nlm.nih.gov), a process to restart broken forks. These diverse functions position RAD18 as a central responder to replication impediments, whether they are DNA lesions, difficult-to-replicate DNA structures, or collisions between replication and transcription machineries (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). By catalyzing PCNA ubiquitination and cooperating with multiple repair pathways, RAD18 coordinates a network of responses that preserve genome integrity during DNA synthesis.

RAD18 in Health and Disease

Cancer Genomics and Mutagenesis: Given its role in tolerating DNA damage (often at the cost of introducing mutations), RAD18 has a complex relationship with cancer. On one hand, RAD18 is protective against acute DNA damage and genomic instability; on the other, its error-prone bypass of lesions can contribute to mutagenesis. High levels of RAD18 have been observed in many cancers, and this is often associated with aggressive disease. For instance, a 2020 clinical study of 96 gastric cancer patients found that tumors with strong RAD18 expression had significantly higher rates of lymph node metastasis and vascular invasion, and patients with RAD18-high tumors had markedly shorter overall survival (pubmed.ncbi.nlm.nih.gov). Specifically, high nuclear RAD18 in gastric tumors correlated with advanced stage (p = 0.0253) and poor prognosis (p = 0.0061 for overall survival) (pubmed.ncbi.nlm.nih.gov). Similarly, in triple-negative breast cancer (TNBC), RAD18 was shown to be overexpressed in high-grade tumors and to correlate inversely with patient survival (pmc.ncbi.nlm.nih.gov). Experimental models have elucidated how RAD18 may drive cancer progression: RAD18’s TLS activity can generate mutations that fuel tumor evolution (pmc.ncbi.nlm.nih.gov). In TNBC cells, RAD18 was found to promote a cancer stem cell-like phenotype via interaction with the Hippo/YAP signaling pathway (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). RAD18 also engages in a positive feedback loop with tumor-associated macrophages: tumor-secreted factors induce macrophages to produce TGF-Ξ², which in turn activates RAD18 and YAP in cancer cells, sustaining stemness and therapy resistance (pmc.ncbi.nlm.nih.gov). These findings underscore that RAD18 is not simply a repair protein but can be co-opted by tumors to enhance malignant traits (metastasis, stemness, mutational adaptability).

Therapeutic Resistance: Cancer cells often rely on RAD18 to survive DNA-damaging treatments, making it a factor in chemo- and radio-resistance. Overexpression of RAD18 has been linked to resistance to platinum chemotherapy in colorectal cancer and to radiotherapy in glioblastoma and lung cancers (www.nature.com) (www.nature.com). For example, knocking down RAD18 in glioma models increased their sensitivity to ionizing radiation, indicating RAD18 normally helps repair or tolerate radiation-induced DNA damage (www.nature.com). Mechanistically, RAD18 can modulate the repair of therapy-induced DNA lesions: one study showed RAD18 overexpression in esophageal carcinoma enhanced repair of radiation damage by regulating DNA-PKcs (a key NHEJ factor) (pmc.ncbi.nlm.nih.gov). Another report described RAD18 promoting epithelial–mesenchymal transition (EMT) and metastasis in colorectal cancer, suggesting RAD18’s activity may extend to altering gene expression programs via DNA damage signals (pmc.ncbi.nlm.nih.gov). These insights have motivated efforts to target RAD18 or its partners pharmacologically. Small-molecule inhibitors of the RAD18 pathway are being explored as adjuvants to cancer therapy. In 2022, researchers discovered a series of xanthene compounds (e.g., β€œTZ9”) that disrupt RAD6–RAD18 function, thereby blocking PCNA ubiquitination (pmc.ncbi.nlm.nih.gov) (pubmed.ncbi.nlm.nih.gov). These compounds inhibit the RAD6~Ub thioester formation and the RAD6–RAD18 interaction, effectively shutting down TLS (pmc.ncbi.nlm.nih.gov). Notably, treating cells with a RAD6/RAD18 inhibitor (like TZ9) phenocopies RAD18 loss: it prevented NiV virus protein ubiquitination (as discussed below) and also impaired post-replication repair (pubmed.ncbi.nlm.nih.gov). Patent literature in 2021–2023 reflects active interest in RAD18 inhibitors for cancer treatment, indicating preclinical development of molecules aiming to block RAD18-mediated tolerance in tumors (patents.google.com) (patents.justia.com). The rationale is that disabling RAD18 will render cancer cells less able to cope with therapy-induced DNA damage or replication stress, thereby enhancing the efficacy of chemo/radiation. However, this strategy must balance the potential for increased normal tissue toxicity and genomic instability.

Viral Exploitation of RAD18: In an interesting twist, viruses can hijack the RAD18 pathway for their own life cycle. A recent study (Cell Reports, 2023) on Nipah virus (NiV) – a highly pathogenic paramyxovirus – revealed that NiV usurps the RAD6–RAD18 ubiquitin complex to modify its matrix (M) protein (pubmed.ncbi.nlm.nih.gov). The NiV M protein must shuttle from the nucleus (where virions assemble) to the cytoplasm for viral budding. RAD18 was found to directly ubiquitinate NiV M at Lys258 via K63-linked polyubiquitin chains, using RAD6A as the E2 enzyme (pubmed.ncbi.nlm.nih.gov). This ubiquitination of M is crucial for its nuclear export: ubiquitinated M relocalizes to the cytoplasm and reaches the plasma membrane for virion release (pubmed.ncbi.nlm.nih.gov). Disrupting the RAD18–RAD6A complex, either by mutating RAD18’s RING domain or applying the RAD6 inhibitor TZ9, blocked M’s ubiquitination and trapped the M protein in the nucleus (pubmed.ncbi.nlm.nih.gov). As a result, NiV and the related Hendra virus were unable to efficiently bud from infected cells, greatly attenuating infection (pubmed.ncbi.nlm.nih.gov). This finding identifies RAD18 as a host factor essential for NiV egress. It suggests that RAD18 inhibitors might serve as antivirals against certain viruses, although host DNA repair would concurrently be affected. Nonetheless, the NiV example highlights RAD18’s versatile enzymatic activity – extending beyond PCNA to ubiquitinate other proteins (here a viral protein) when recruited to them. It also provides a β€œreal-world” demonstration that small molecules targeting the RAD18/RAD6 pathway (like TZ9) can have tangible biological effects (e.g. blocking a lethal virus) (pubmed.ncbi.nlm.nih.gov).

Expert Perspectives and Current Research Frontiers

RAD18 is widely regarded by experts as a master regulator of replication stress responses. As an authoritative review noted, RAD18 β€œcoordinates multiple DNA repair and damage tolerance pathways including post-replication repair, homologous recombination, Fanconi anemia, and break-induced replication” (pmc.ncbi.nlm.nih.gov). By modifying the key sliding clamp PCNA, RAD18 orchestrates the switch between high-fidelity replication and specialized rescue pathways (pmc.ncbi.nlm.nih.gov). This central role has made RAD18 a focal point in understanding how cells maintain genome stability. Recent research (2022–2024) has significantly expanded our understanding of RAD18’s functions:
- Transcription-Associated Damage: Wells et al. (PLoS Genet, Dec 2022) demonstrated that RAD18 prevents transcription-replication conflicts from turning into DNA breaks by recruiting FANCD2 to resolve R-loops (pmc.ncbi.nlm.nih.gov). This indicates RAD18 is active at common fragile sites and conflict-prone genes, not just at exogenous damage sites.
- DSB Repair Choice: Palek et al. (Nucleic Acids Res, July 2024) showed RAD18 is a novel factor in DSB repair pathway choice – promoting HR by excluding 53BP1 in the context of newly replicated chromatin (pmc.ncbi.nlm.nih.gov). This was a surprising new role, hinting that RAD18 links the replication-coupled repair of one-ended breaks to the classical HR machinery.
- Regulatory Modifications: Zhang et al. (Cell Death Dis., 2024) uncovered the O-GlcNAc modification of RAD18 as a key enhancer of its activity in both TLS and HR, connecting cellular metabolic status (glucose levels) to DNA repair capacity (www.nature.com) (www.nature.com). In parallel, Okano et al. (EMBO J., 2024) identified ATR kinase as a checkpoint that restrains RAD18, thereby protecting replication forks and telomeres from excessive processing (www.embopress.org) (www.embopress.org). This kind of crosstalk between checkpoint signaling and RAD18 ensures a balance between damage bypass and fork stability.
- Structural Insights: Griffith-Jones et al. (EMBO J., 2024) provided high-resolution insight into RAD18’s regulation by cancer-testis antigens (MAGE proteins). Their work solved how MAGEA4 binds RAD18’s RING domain and RAD6-binding domain, stabilizing the ligase and enhancing its activity (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). This not only explained one mechanism of chemoresistance in MAGEA4-positive tumors, but also suggested a new therapeutic angle: disrupting the RAD18–MAGEA4 interaction may selectively sensitize cancer cells (pmc.ncbi.nlm.nih.gov).
- Disease Models: Recent in vivo studies have examined RAD18 in disease contexts. For example, a 2024 Scientific Reports study tested RAD18’s role in B cell lymphomas using Rad18-knockout mice. Spontaneously, Rad18-deficient mice had increased B-cell malignancies after carcinogen exposure (www.nature.com), but in an aggressive Myc-driven lymphoma model, loss of Rad18 did not significantly alter tumor onset (www.nature.com) (www.nature.com). These results imply that RAD18’s role in cancer can be context-dependent and potentially compensated by parallel pathways in some cell types (www.nature.com).

Overall, current expert consensus portrays RAD18 as a guardian of replication that, if dysregulated, can become a double-edged sword – preventing catastrophic genome damage on one hand, but enabling genome instability and therapy resistance on the other (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). Its importance is underscored by the breadth of processes it touches: from ensuring fertility (spermatogenesis requires RAD18 for meiotic DNA repair (www.nature.com)) to influencing the outcomes of cancer therapy. As of 2024, RAD18 remains an active research focus. Key open questions include how RAD18 selects its substrates (beyond PCNA and the few known targets), how it is coordinated with polymerase choice in different lesions, and whether transient RAD18 inhibition can be a safe and effective strategy to augment cancer treatments. Ongoing clinical interest is evident – RAD18 expression is being evaluated as a prognostic biomarker, and preclinical trials of RAD18-pathway inhibitors are likely on the horizon (patents.google.com) (patents.justia.com).

In summary, RAD18 is a pivotal E3 ligase in human cells with a well-established role in monoubiquitinating PCNA to promote DNA damage tolerance. It operates at the crossroads of DNA replication, repair, and checkpoint signaling, ensuring that cells can bypass DNA lesions and recover from replication stress. Cutting-edge studies in 2023–2024 have expanded its known functions to include aiding homologous recombination and preventing transcription-associated genome instability, as well as illuminating mechanisms of its regulation. Clinically, while essential for genome stability, RAD18’s activity can be a liability when hijacked by cancer cells or viruses – making it an attractive, if challenging, target for therapeutic intervention. As one research group aptly summarized, β€œRAD18 plays numerous roles in genome instability, driven mostly through regulated ubiquitination of [its] primary substrate, PCNA” (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). Understanding and modulating those roles continues to be critical in the quest to maintain genomic integrity and improve disease outcomes.

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  56. AnnotationURLCitation(end_index=18365, start_index=18247, title='Structural basis for RAD18 regulation by MAGEA4 and its implications for RING ubiquitin ligase binding by MAGE family proteins - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC10987633/#:~:text=,degradative%20autoubiquitination')
  57. AnnotationURLCitation(end_index=19304, start_index=19147, title='RAD18 opposes transcription-associated genome instability through FANCD2 recruitment - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9767342/#:~:text=RAD18%20is%20a%20conserved%20E3,conductor%20at%20the%20replication%20fork')
  58. AnnotationURLCitation(end_index=19903, start_index=19768, title='Enhanced Genomic Instability and Defective Postreplication Repair in RAD18 Knockout Mouse Embryonic Stem Cells - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC151530/#:~:text=Enhanced%20Genomic%20Instability%20and%20Defective,2')
  59. AnnotationURLCitation(end_index=20312, start_index=20168, title='Dysfunction of human Rad18 results in defective postreplication repair and hypersensitivity to multiple mutagens - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC16647/#:~:text=hypersensitivity%20to%20multiple%20mutagens%20,Oligonucleotide')
  60. AnnotationURLCitation(end_index=20819, start_index=20666, title='RAD18 opposes transcription-associated genome instability through FANCD2 recruitment - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9767342/#:~:text=pathways%20to%20preserve%20genome%20stability,replication%20conflicts')
  61. AnnotationURLCitation(end_index=21175, start_index=21022, title='RAD18 opposes transcription-associated genome instability through FANCD2 recruitment - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9767342/#:~:text=pathways%20to%20preserve%20genome%20stability,replication%20conflicts')
  62. AnnotationURLCitation(end_index=21497, start_index=21339, title='RAD18 opposes transcription-associated genome instability through FANCD2 recruitment - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9767342/#:~:text=conflicts%20and%20accumulate%20DNA%3ARNA%20hybrids,replication%20conflicts')
  63. AnnotationURLCitation(end_index=21982, start_index=21821, title='RAD18 opposes transcription-associated genome instability through FANCD2 recruitment - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9767342/#:~:text=DNA%20replication%20is%20a%20vulnerable,at%20difficult%20to%20replicate%20and')
  64. AnnotationURLCitation(end_index=22128, start_index=21983, title='RAD18 opposes transcription-associated genome instability through FANCD2 recruitment - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9767342/#:~:text=to%20recruit%20the%20Fanconi%20Anemia,replication%20conflicts')
  65. AnnotationURLCitation(end_index=22881, start_index=22717, title='RAD18 directs DNA\xa0double-strand break repair by homologous recombination to post-replicative chromatin - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC11260465/#:~:text=classical%20role%2C%20RAD18%20has%20been,and%20limits%20the%20distribution%20of')
  66. AnnotationURLCitation(end_index=23201, start_index=23037, title='RAD18 directs DNA\xa0double-strand break repair by homologous recombination to post-replicative chromatin - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC11260465/#:~:text=classical%20role%2C%20RAD18%20has%20been,and%20limits%20the%20distribution%20of')
  67. AnnotationURLCitation(end_index=23429, start_index=23265, title='RAD18 directs DNA\xa0double-strand break repair by homologous recombination to post-replicative chromatin - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC11260465/#:~:text=classical%20role%2C%20RAD18%20has%20been,and%20limits%20the%20distribution%20of')
  68. AnnotationURLCitation(end_index=23915, start_index=23751, title='RAD18 directs DNA\xa0double-strand break repair by homologous recombination to post-replicative chromatin - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC11260465/#:~:text=classical%20role%2C%20RAD18%20has%20been,and%20limits%20the%20distribution%20of')
  69. AnnotationURLCitation(end_index=24299, start_index=24146, title='RAD18 directs DNA double-strand break repair by homologous recombination to post-replicative chromatin - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/38884202/#:~:text=RAD18%20is%20an%20E3%20ubiquitin,to%20DNA%20breaks%2C%20interaction%20with')
  70. AnnotationURLCitation(end_index=24477, start_index=24300, title='RAD18 directs DNA double-strand break repair by homologous recombination to post-replicative chromatin - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/38884202/#:~:text=to%20DNA%20lesions%20by%20monoubiquitination,Surprisingly%2C%20suppression%20of%2053BP1%20function')
  71. AnnotationURLCitation(end_index=24815, start_index=24651, title='RAD18 directs DNA\xa0double-strand break repair by homologous recombination to post-replicative chromatin - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC11260465/#:~:text=classical%20role%2C%20RAD18%20has%20been,and%20limits%20the%20distribution%20of')
  72. AnnotationURLCitation(end_index=25263, start_index=25114, title='Exploring RAD18-dependent replication of damaged DNA and discontinuities: A collection of advanced tools - ScienceDirect', type='url_citation', url='https://www.sciencedirect.com/science/article/pii/S0168165623002122#:~:text=Exploring%20RAD18,Exploring%20the%20role%20and')
  73. AnnotationURLCitation(end_index=25413, start_index=25264, title='DNA repair factor RAD18 and DNA polymerase PolΞΊ confer tolerance of oncogenic DNA replication stress - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/28835467/#:~:text=DNA%20repair%20factor%20RAD18%20and,h%2C%20and%20cell%20lysates%20were')
  74. AnnotationURLCitation(end_index=26265, start_index=26102, title='DNA repair factor RAD18 and DNA polymerase PolΞΊ confer tolerance of oncogenic DNA replication stress - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC5626543/#:~:text=Skip%20to%20main%20content%20J,Rottmayer%20%5E%7B1%7D%2C%20Anastasia%20Zlatanou')
  75. AnnotationURLCitation(end_index=26589, start_index=26426, title='DNA repair factor RAD18 and DNA polymerase PolΞΊ confer tolerance of oncogenic DNA replication stress - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC5626543/#:~:text=Skip%20to%20main%20content%20J,Rottmayer%20%5E%7B1%7D%2C%20Anastasia%20Zlatanou')
  76. AnnotationURLCitation(end_index=26855, start_index=26684, title='Rad18 guides polΞ· to replication stalling sites through physical interaction and PCNA monoubiquitination - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC522788/#:~:text=Rad18%20guides%20pol%CE%B7%20to%20replication,detectable%20levels%20of%20Rad18%20protein')
  77. AnnotationURLCitation(end_index=27142, start_index=26985, title='RAD18 opposes transcription-associated genome instability through FANCD2 recruitment - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9767342/#:~:text=RAD18%20is%20a%20conserved%20E3,conductor%20at%20the%20replication%20fork')
  78. AnnotationURLCitation(end_index=27563, start_index=27402, title='RAD18 opposes transcription-associated genome instability through FANCD2 recruitment - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9767342/#:~:text=DNA%20replication%20is%20a%20vulnerable,at%20difficult%20to%20replicate%20and')
  79. AnnotationURLCitation(end_index=27717, start_index=27564, title='RAD18 opposes transcription-associated genome instability through FANCD2 recruitment - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9767342/#:~:text=pathways%20to%20preserve%20genome%20stability,replication%20conflicts')
  80. AnnotationURLCitation(end_index=28789, start_index=28643, title='High RAD18 Expression is Associated with Disease Progression and Poor Prognosis in Patients with Gastric Cancer - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/32356270/#:~:text=Results%3A%20RAD18%20expression%20was%20predominantly,0061%29%20and')
  81. AnnotationURLCitation(end_index=29085, start_index=28939, title='High RAD18 Expression is Associated with Disease Progression and Poor Prognosis in Patients with Gastric Cancer - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/32356270/#:~:text=Results%3A%20RAD18%20expression%20was%20predominantly,0061%29%20and')
  82. AnnotationURLCitation(end_index=29425, start_index=29245, title='A positive feedback loop: RAD18-YAP-TGF-Ξ² between triple-negative breast cancer and macrophages regulates cancer stemness and progression - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9005530/#:~:text=tumor%20microenvironment%2C%20remains%20elusive,nude%20mice%2C%20RAD18%20promoted%20subcutaneous')
  83. AnnotationURLCitation(end_index=29726, start_index=29573, title='A positive feedback loop: RAD18-YAP-TGF-Ξ² between triple-negative breast cancer and macrophages regulates cancer stemness and progression - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9005530/#:~:text=As%20a%20key%20regulator%20of,RAD18%20facilitated%20a%20highly%20stem')
  84. AnnotationURLCitation(end_index=30041, start_index=29861, title='A positive feedback loop: RAD18-YAP-TGF-Ξ² between triple-negative breast cancer and macrophages regulates cancer stemness and progression - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9005530/#:~:text=tumor%20microenvironment%2C%20remains%20elusive,nude%20mice%2C%20RAD18%20promoted%20subcutaneous')
  85. AnnotationURLCitation(end_index=30192, start_index=30042, title='A positive feedback loop: RAD18-YAP-TGF-Ξ² between triple-negative breast cancer and macrophages regulates cancer stemness and progression - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9005530/#:~:text=correlated%20with%20prognosis,of%20the%20stemness%20phenotype%20by')
  86. AnnotationURLCitation(end_index=30584, start_index=30434, title='A positive feedback loop: RAD18-YAP-TGF-Ξ² between triple-negative breast cancer and macrophages regulates cancer stemness and progression - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9005530/#:~:text=correlated%20with%20prognosis,of%20the%20stemness%20phenotype%20by')
  87. AnnotationURLCitation(end_index=31192, start_index=31063, title='Role of Rad18 in B cell activation and lymphomagenesis | Scientific Reports', type='url_citation', url='https://www.nature.com/articles/s41598-024-57018-w#:~:text=Several%20studies%20have%20addressed%20the,induced')
  88. AnnotationURLCitation(end_index=31338, start_index=31193, title='Role of Rad18 in B cell activation and lymphomagenesis | Scientific Reports', type='url_citation', url='https://www.nature.com/articles/s41598-024-57018-w#:~:text=cooperates%20with%20MAGE,affects%20migration%20and%20invasion%20of')
  89. AnnotationURLCitation(end_index=31666, start_index=31521, title='Role of Rad18 in B cell activation and lymphomagenesis | Scientific Reports', type='url_citation', url='https://www.nature.com/articles/s41598-024-57018-w#:~:text=cooperates%20with%20MAGE,affects%20migration%20and%20invasion%20of')
  90. AnnotationURLCitation(end_index=32068, start_index=31888, title='RAD18 confers radioresistance of esophagus squamous cell carcinoma through regulating p‐DNA‐PKcs - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9582675/#:~:text=RAD18%20confers%20radioresistance%20of%20esophagus,in%20Dulbecco%27s%20Modified%20Eagle%20Medium')
  91. AnnotationURLCitation(end_index=32440, start_index=32287, title='RAD18 promotes colorectal cancer metastasis by activating the epithelial-mesenchymal transition pathway - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC7251712/#:~:text=RAD18%20promotes%20colorectal%20cancer%20metastasis,4%7D%2C%20Jundong')
  92. AnnotationURLCitation(end_index=32970, start_index=32785, title='A series of xanthenes inhibiting Rad6 function and Rad6-Rad18 interaction in the PCNA ubiquitination cascade - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC8958325/#:~:text=Ubiquitination%20of%20proliferating%20cell%20nuclear,important%20for%20different%20activities%20along')
  93. AnnotationURLCitation(end_index=33108, start_index=32971, title='The E3 ligase RAD18-mediated ubiquitination of henipavirus matrix protein promotes its nuclear-cytoplasmic trafficking and viral egress - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/39628457/#:~:text=through%20a%20K63,infection%20is%20attenuated%20in%20RAD18')
  94. AnnotationURLCitation(end_index=33413, start_index=33228, title='A series of xanthenes inhibiting Rad6 function and Rad6-Rad18 interaction in the PCNA ubiquitination cascade - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC8958325/#:~:text=Ubiquitination%20of%20proliferating%20cell%20nuclear,important%20for%20different%20activities%20along')
  95. AnnotationURLCitation(end_index=33748, start_index=33611, title='The E3 ligase RAD18-mediated ubiquitination of henipavirus matrix protein promotes its nuclear-cytoplasmic trafficking and viral egress - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/39628457/#:~:text=through%20a%20K63,infection%20is%20attenuated%20in%20RAD18')
  96. AnnotationURLCitation(end_index=34117, start_index=33951, title='EP3237444A1 - Use of rad18 inhibitors in the treatment of tumors - Google Patents', type='url_citation', url='https://patents.google.com/patent/EP3237444A1/en#:~:text=Patents%20patents.google.com%20%20EP3237444A1%20,A1%20EP3237444%20A1%20EP%203237444A1')
  97. AnnotationURLCitation(end_index=34198, start_index=34118, title='U.S. Patent for Use of Rad18 inhibitors in the treatment of tumors Patent (Patent # 11,203,757 issued December 21, 2021) - Justia Patents Search', type='url_citation', url='https://patents.justia.com/patent/11203757#:~:text=U,The')
  98. AnnotationURLCitation(end_index=34990, start_index=34811, title='The E3 ligase RAD18-mediated ubiquitination of henipavirus matrix protein promotes its nuclear-cytoplasmic trafficking and viral egress - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/39628457/#:~:text=ubiquitination%20cascade%20have%20remained%20elusive,modification%20crucial%20for%20M%27s%20function')
  99. AnnotationURLCitation(end_index=35387, start_index=35224, title='The E3 ligase RAD18-mediated ubiquitination of henipavirus matrix protein promotes its nuclear-cytoplasmic trafficking and viral egress - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/39628457/#:~:text=utilizes%20a%20ubiquitination%20complex%20involving,Conversely%2C%20disrupting%20the')
  100. AnnotationURLCitation(end_index=35672, start_index=35547, title='The E3 ligase RAD18-mediated ubiquitination of henipavirus matrix protein promotes its nuclear-cytoplasmic trafficking and viral egress - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/39628457/#:~:text=RAD18,infection%20is%20attenuated%20in%20RAD18')
  101. AnnotationURLCitation(end_index=35990, start_index=35853, title='The E3 ligase RAD18-mediated ubiquitination of henipavirus matrix protein promotes its nuclear-cytoplasmic trafficking and viral egress - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/39628457/#:~:text=through%20a%20K63,infection%20is%20attenuated%20in%20RAD18')
  102. AnnotationURLCitation(end_index=36257, start_index=36120, title='The E3 ligase RAD18-mediated ubiquitination of henipavirus matrix protein promotes its nuclear-cytoplasmic trafficking and viral egress - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/39628457/#:~:text=through%20a%20K63,infection%20is%20attenuated%20in%20RAD18')
  103. AnnotationURLCitation(end_index=37000, start_index=36836, title='The E3 ligase RAD18-mediated ubiquitination of henipavirus matrix protein promotes its nuclear-cytoplasmic trafficking and viral egress - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/39628457/#:~:text=plasma%20membranes%20for%20effective%20viral,infection%20is%20attenuated%20in%20RAD18')
  104. AnnotationURLCitation(end_index=37521, start_index=37364, title='RAD18 opposes transcription-associated genome instability through FANCD2 recruitment - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9767342/#:~:text=RAD18%20is%20a%20conserved%20E3,conductor%20at%20the%20replication%20fork')
  105. AnnotationURLCitation(end_index=37773, start_index=37660, title='RAD18 opposes transcription-associated genome instability through FANCD2 recruitment - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9767342/#:~:text=replication%20%28BIR%29%20,12')
  106. AnnotationURLCitation(end_index=38339, start_index=38186, title='RAD18 opposes transcription-associated genome instability through FANCD2 recruitment - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9767342/#:~:text=pathways%20to%20preserve%20genome%20stability,replication%20conflicts')
  107. AnnotationURLCitation(end_index=38824, start_index=38668, title='RAD18 directs DNA\xa0double-strand break repair by homologous recombination to post-replicative chromatin - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC11260465/#:~:text=RAD18%20is%20an%20E3%20ubiquitin,and%20limits%20the%20distribution%20of')
  108. AnnotationURLCitation(end_index=39356, start_index=39212, title='RAD18 O-GlcNAcylation promotes translesion DNA synthesis and homologous recombination repair | Cell Death & Disease', type='url_citation', url='https://www.nature.com/articles/s41419-024-06700-y#:~:text=RAD18%20at%20DNA%20double,establishing%20a%20new%20rationale%20to')
  109. AnnotationURLCitation(end_index=39515, start_index=39357, title='RAD18 O-GlcNAcylation promotes translesion DNA synthesis and homologous recombination repair | Cell Death & Disease', type='url_citation', url='https://www.nature.com/articles/s41419-024-06700-y#:~:text=In%20this%20study%2C%20we%20identified,Although%20S130A%2FS164A%2FT468A%20%283A')
  110. AnnotationURLCitation(end_index=39863, start_index=39698, title='ATR limits Rad18-mediated PCNA monoubiquitination to preserve replication fork and telomerase-independent telomere stability | The EMBO Journal', type='url_citation', url='https://www.embopress.org/doi/10.1038/s44318-024-00066-9#:~:text=ATR%20activation%20and%20Rad18,of%20this%20interplay%2C%20remain%20unresolved')
  111. AnnotationURLCitation(end_index=40044, start_index=39864, title='ATR limits Rad18-mediated PCNA monoubiquitination to preserve replication fork and telomerase-independent telomere stability | The EMBO Journal', type='url_citation', url='https://www.embopress.org/doi/10.1038/s44318-024-00066-9#:~:text=Rad18%20at%20Ser403%20during%20replication,ATR%E2%80%99s%20role%20extends%20to%20maintaining')
  112. AnnotationURLCitation(end_index=40613, start_index=40465, title='Structural basis for RAD18 regulation by MAGEA4 and its implications for RING ubiquitin ligase binding by MAGE family proteins - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC10987633/#:~:text=,inhibits%20degradative%20RAD18%20autoubiquitination%2C%20which')
  113. AnnotationURLCitation(end_index=40732, start_index=40614, title='Structural basis for RAD18 regulation by MAGEA4 and its implications for RING ubiquitin ligase binding by MAGE family proteins - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC10987633/#:~:text=,degradative%20autoubiquitination')
  114. AnnotationURLCitation(end_index=41098, start_index=40941, title='Structural basis for RAD18 regulation by MAGEA4 and its implications for RING ubiquitin ligase binding by MAGE family proteins - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC10987633/#:~:text=match%20at%20L186%20MAGEA4%20in,drug%20target%20for%20cancer%20therapies')
  115. AnnotationURLCitation(end_index=41544, start_index=41398, title='Role of Rad18 in B cell activation and lymphomagenesis | Scientific Reports', type='url_citation', url='https://www.nature.com/articles/s41598-024-57018-w#:~:text=A%20recent%20study%20analysed%20the,of%20generation%20of%20B%20cell')
  116. AnnotationURLCitation(end_index=41797, start_index=41648, title='Role of Rad18 in B cell activation and lymphomagenesis | Scientific Reports', type='url_citation', url='https://www.nature.com/articles/s41598-024-57018-w#:~:text=studies%20have%20shown%20different%20roles,We%20find%20no%20activation')
  117. AnnotationURLCitation(end_index=41927, start_index=41798, title='Role of Rad18 in B cell activation and lymphomagenesis | Scientific Reports', type='url_citation', url='https://www.nature.com/articles/s41598-024-57018-w#:~:text=Several%20studies%20have%20addressed%20the,induced')
  118. AnnotationURLCitation(end_index=42230, start_index=42070, title='Role of Rad18 in B cell activation and lymphomagenesis | Scientific Reports', type='url_citation', url='https://www.nature.com/articles/s41598-024-57018-w#:~:text=defects%20or%20survival%20differences%20between,other%20pathways%20in%20B%20cells')
  119. AnnotationURLCitation(end_index=42645, start_index=42492, title='A positive feedback loop: RAD18-YAP-TGF-Ξ² between triple-negative breast cancer and macrophages regulates cancer stemness and progression - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9005530/#:~:text=As%20a%20key%20regulator%20of,RAD18%20facilitated%20a%20highly%20stem')
  120. AnnotationURLCitation(end_index=42817, start_index=42646, title='A positive feedback loop: RAD18-YAP-TGF-Ξ² between triple-negative breast cancer and macrophages regulates cancer stemness and progression - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9005530/#:~:text=tumor%20microenvironment%2C%20remains%20elusive,this%20loop%20and%20suppresses%20cancer')
  121. AnnotationURLCitation(end_index=43118, start_index=42968, title='Role of Rad18 in B cell activation and lymphomagenesis | Scientific Reports', type='url_citation', url='https://www.nature.com/articles/s41598-024-57018-w#:~:text=of%20the%20Fanconi%20anaemia%20pathway,play%20a%20role%20during%20viral')
  122. AnnotationURLCitation(end_index=43842, start_index=43676, title='EP3237444A1 - Use of rad18 inhibitors in the treatment of tumors - Google Patents', type='url_citation', url='https://patents.google.com/patent/EP3237444A1/en#:~:text=Patents%20patents.google.com%20%20EP3237444A1%20,A1%20EP3237444%20A1%20EP%203237444A1')
  123. AnnotationURLCitation(end_index=43923, start_index=43843, title='U.S. Patent for Use of Rad18 inhibitors in the treatment of tumors Patent (Patent # 11,203,757 issued December 21, 2021) - Justia Patents Search', type='url_citation', url='https://patents.justia.com/patent/11203757#:~:text=U,The')
  124. AnnotationURLCitation(end_index=45002, start_index=44845, title='RAD18 opposes transcription-associated genome instability through FANCD2 recruitment - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9767342/#:~:text=RAD18%20is%20a%20conserved%20E3,conductor%20at%20the%20replication%20fork')
  125. AnnotationURLCitation(end_index=45116, start_index=45003, title='RAD18 opposes transcription-associated genome instability through FANCD2 recruitment - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9767342/#:~:text=replication%20%28BIR%29%20,12')

πŸ“„ View Raw YAML

id: Q9NS91
gene_symbol: RAD18
product_type: PROTEIN
status: COMPLETE
taxon:
  id: NCBITaxon:9606
  label: Homo sapiens
description: >-
  RAD18 is a RING-type E3 ubiquitin ligase (EC 2.3.2.27) that functions as a central
  regulator of DNA damage tolerance (DDT).
  In complex with its E2 partner RAD6 (UBE2A/UBE2B), RAD18 catalyzes monoubiquitination
  of PCNA at Lys164, which is the
  key initiating event for translesion DNA synthesis (TLS). This modification recruits
  Y-family TLS polymerases
  (e.g., POL eta) to stalled replication forks, enabling bypass of DNA lesions. RAD18
  contains functional domains including
  a RING finger (E3 ligase catalytic activity), UBZ domain (ubiquitin binding/damage
  site targeting), SAP domain
  (DNA/chromatin binding for recognition of forked/ssDNA), and a PIP-like motif for
  PCNA interaction. RAD18 also
  participates in error-free template switching via K63-linked PCNA polyubiquitination
  and exhibits crosstalk with
  the Fanconi anemia pathway and homologous recombination.
existing_annotations:
# IBA annotations - phylogenetically inferred, generally high quality
  - term:
      id: GO:0005634
      label: nucleus
    evidence_type: IBA
    original_reference_id: GO_REF:0000033
    review:
      summary: >-
        RAD18 is localized to the nucleus where it carries out its DNA damage tolerance
        functions.
        Multiple studies confirm nuclear localization: PMID:10884424 identified hRAD18
        as nuclear,
        PMID:15632077 showed RAD18 colocalizes with BRCTx in the nucleus, PMID:22036607
        demonstrated
        nuclear localization and nuclear inclusion body formation, and PMID:25023518
        showed nuclear
        foci formation after DNA damage.
      action: ACCEPT
      reason: >-
        Nuclear localization is well-supported by multiple experimental studies. The
        IBA annotation
        is phylogenetically consistent with experimental evidence from human and model
        organisms.
      supported_by:
        - reference_id: PMID:10884424
          supporting_text: "hRad18 protein binds to hHR6 protein through a conserved
            ring-finger motif"
        - reference_id: PMID:15632077
          supporting_text: "BRCTx binds to the C terminus of hRAD18 in yeast two-hybrid
            and immunoprecipitation assays and colocalizes with this protein in the
            nucleus"
        - reference_id: PMID:22036607
          supporting_text: "RAD18-BRCTx interaction is required for efficient repair
            of UV-induced DNA damage"

        - reference_id: file:human/RAD18/RAD18-deep-research-falcon.md
          supporting_text: 'model: Edison Scientific Literature'
  - term:
      id: GO:0006301
      label: DNA damage tolerance
    evidence_type: IBA
    original_reference_id: GO_REF:0000033
    review:
      summary: >-
        DNA damage tolerance is the core biological process of RAD18. RAD18-mediated
        PCNA monoubiquitination
        is the key initiating event for translesion synthesis and template switching,
        both major branches
        of DDT. Loss of RAD18 results in defective postreplication repair and hypersensitivity
        to UV,
        MMS, and mitomycin C (PMID:10884424). Recent studies (Chen et al. 2024, Ma
        et al. 2024) confirm
        RAD18's central role in DDT through PCNA ubiquitination.
      action: ACCEPT
      reason: >-
        This is the primary biological process annotation for RAD18 and is strongly
        supported by
        extensive literature. The IBA annotation correctly captures the core function.
      supported_by:
        - reference_id: PMID:10884424
          supporting_text: "Stable transformants with hRad18 mutated in this motif
            become sensitive to UV, methyl methanesulfonate, and mitomycin C, and
            are defective in the replication of UV-damaged DNA"
        - reference_id: PMID:10908344
          supporting_text: "Through interaction and complex formation with HHR6A and
            HHR6B, RAD18 protein may play an important role in lesion bypass mechanisms
            in humans"

  - term:
      id: GO:0006513
      label: protein monoubiquitination
    evidence_type: IBA
    original_reference_id: GO_REF:0000033
    review:
      summary: >-
        RAD18, together with E2 RAD6, catalyzes monoubiquitination of PCNA at Lys164.
        This is the
        primary enzymatic output of RAD18 activity. Multiple studies confirm this
        including
        PMID:18363965 which shows the SAP domain is required for efficient mono-ubiquitination
        of PCNA,
        and PMID:25023518 which demonstrates that Rad18 is required for PCNA monoubiquitination.
      action: ACCEPT
      reason: >-
        Protein monoubiquitination accurately describes RAD18's enzymatic activity
        on its primary
        substrate PCNA. This is a core function annotation.
      supported_by:
        - reference_id: PMID:18363965
          supporting_text: "The SAP domain is also required for the efficient mono-ubiquitination
            of PCNA"
        - reference_id: PMID:25023518
          supporting_text: "Rad18 is a central E3 ubiquitin ligase in DDT, which exists
            in a monoubiquitinated (Rad18β€’Ub) and nonubiquitinated form in human cells"

  - term:
      id: GO:0097505
      label: Rad6-Rad18 complex
    evidence_type: IBA
    original_reference_id: GO_REF:0000033
    review:
      summary: >-
        RAD18 forms a stable complex with RAD6 (UBE2A/UBE2B in humans) that is essential
        for its
        E3 ubiquitin ligase function. PMID:10908344 demonstrated that human RAD18
        interacts with
        HHR6A and HHR6B, with stable protein complexes identified and purified. PMID:10884424
        showed hRad18 binds to hHR6 through the conserved ring-finger motif. PMID:18363965
        confirmed that RAD18 complexed with RAD6B is recruited to stalled replication
        forks.
      action: ACCEPT
      reason: >-
        Complex formation with RAD6 is essential for RAD18 function and is well-supported
        by multiple experimental studies in human cells.
      supported_by:
        - reference_id: PMID:10908344
          supporting_text: "Human RAD18 protein (hRAD18) was found to interact with
            HHR6A and HHR6B. When co-expressed in yeast cells, stable hRAD18-HHR6A
            and hRAD18-HHR6B protein complexes were identified and purified to near
            homogeneity"
        - reference_id: PMID:10884424
          supporting_text: "In vivo, hRad18 protein binds to hHR6 protein through
            a conserved ring-finger motif"

# IEA annotations - electronic, need verification
  - term:
      id: GO:0003677
      label: DNA binding
    evidence_type: IEA
    original_reference_id: GO_REF:0000120
    review:
      summary: >-
        RAD18 binds DNA through its SAP domain, with preference for forked and single-stranded
        DNA structures. PMID:18363965 provides direct experimental evidence that RAD18
        complexed
        with RAD6B preferentially binds to forked and ssDNA structures, with the SAP
        domain
        (residues 248-282) being crucial for DNA binding.
      action: ACCEPT
      reason: >-
        DNA binding is experimentally validated. The IEA annotation is correct and
        supported
        by direct evidence in PMID:18363965.
      supported_by:
        - reference_id: PMID:18363965
          supporting_text: "Human RAD18 complexed with RAD6B protein preferentially
            binds to forked and single-stranded DNA (ssDNA) structures"

  - term:
      id: GO:0003697
      label: single-stranded DNA binding
    evidence_type: IEA
    original_reference_id: GO_REF:0000002
    review:
      summary: >-
        PMID:18363965 directly demonstrated that RAD18-RAD6B complex binds to ssDNA
        structures
        localized at stalled replication forks. This binding is mediated by the SAP
        domain.
      action: ACCEPT
      reason: >-
        The IEA annotation is validated by experimental evidence. ssDNA binding is
        a more
        specific annotation than general DNA binding and accurately reflects RAD18's
        substrate
        preference.
      supported_by:
        - reference_id: PMID:18363965
          supporting_text: "Human RAD18 complexed with RAD6B protein preferentially
            binds to forked and single-stranded DNA (ssDNA) structures, which are
            known to be localized at stalled replication forks"

  - term:
      id: GO:0005634
      label: nucleus
    evidence_type: IEA
    original_reference_id: GO_REF:0000120
    review:
      summary: >-
        Duplicate annotation of nucleus localization, also supported by IBA evidence.
        Well-validated experimentally (see IBA annotation review above).
      action: ACCEPT
      reason: >-
        Correct annotation, duplicative with IBA but acceptable.
      supported_by:
        - reference_id: PMID:15632077
          supporting_text: "colocalizes with this protein in the nucleus"

  - term:
      id: GO:0005694
      label: chromosome
    evidence_type: IEA
    original_reference_id: GO_REF:0000117
    review:
      summary: >-
        RAD18 functions at replication forks and DNA damage sites on chromosomes.
        Its localization
        to chromatin during DNA damage response is well-documented, including localization
        to
        stalled replication forks and sites of double-strand breaks.
      action: ACCEPT
      reason: >-
        RAD18's association with chromosomes during replication stress and DNA damage
        is
        consistent with its function.
      supported_by:
        - reference_id: PMID:18363965
          supporting_text: "RAD18 complexed with RAD6B is recruited to stalled replication
            forks"

  - term:
      id: GO:0005813
      label: centrosome
    evidence_type: IEA
    original_reference_id: GO_REF:0000044
    review:
      summary: >-
        PMID:15632077 provides experimental evidence that BRCTx (a RAD18-interacting
        protein)
        localizes to the centrosome, and the study showed RAD18 interaction with BRCTx.
        RAD18 centrosome localization is experimentally supported.
      action: ACCEPT
      reason: >-
        Centrosome localization is supported by IDA evidence from PMID:15632077, validating
        the IEA annotation.
      supported_by:
        - reference_id: PMID:15632077
          supporting_text: "the BRCT domain of BRCTx is responsible for mediating
            its localization to the nucleus and centrosome in interphase cells"

  - term:
      id: GO:0006281
      label: DNA repair
    evidence_type: IEA
    original_reference_id: GO_REF:0000120
    review:
      summary: >-
        RAD18 participates in DNA repair through its role in postreplication repair.
        While DNA
        damage tolerance (GO:0006301) is more precise for RAD18's primary function,
        DNA repair
        as a parent term is not incorrect. PMID:10884424 describes RAD18's role in
        postreplication
        repair.
      action: ACCEPT
      reason: >-
        DNA repair is a broader term that encompasses RAD18's function. While DNA
        damage
        tolerance is more specific, this annotation is not incorrect.
      supported_by:
        - reference_id: PMID:10884424
          supporting_text: "Dysfunction of human Rad18 results in defective postreplication
            repair and hypersensitivity to multiple mutagens"

  - term:
      id: GO:0006301
      label: DNA damage tolerance
    evidence_type: IEA
    original_reference_id: GO_REF:0000002
    review:
      summary: >-
        Duplicate of IBA annotation. DNA damage tolerance is the core biological process
        for RAD18.
      action: ACCEPT
      reason: >-
        Correct annotation, duplicative with IBA evidence but acceptable.
      supported_by:
        - reference_id: PMID:10884424
          supporting_text: "Dysfunction of human Rad18 results in defective postreplication
            repair"

  - term:
      id: GO:0006513
      label: protein monoubiquitination
    evidence_type: IEA
    original_reference_id: GO_REF:0000002
    review:
      summary: >-
        Duplicate of IBA annotation. RAD18 catalyzes PCNA monoubiquitination.
      action: ACCEPT
      reason: >-
        Correct annotation, duplicative with IBA evidence.
      supported_by:
        - reference_id: PMID:18363965
          supporting_text: "The SAP domain is also required for the efficient mono-ubiquitination
            of PCNA"

  - term:
      id: GO:0006974
      label: DNA damage response
    evidence_type: IEA
    original_reference_id: GO_REF:0000120
    review:
      summary: >-
        RAD18 is involved in the cellular response to DNA damage, particularly at
        stalled
        replication forks. Multiple IDA annotations support this (PMID:22036607, PMID:25023518,
        PMID:25931565).
      action: ACCEPT
      reason: >-
        DNA damage response is well-supported by multiple experimental studies.
      supported_by:
        - reference_id: PMID:22036607
          supporting_text: "RAD18-BRCTx interaction is required for efficient repair
            of UV-induced DNA damage"

  - term:
      id: GO:0008270
      label: zinc ion binding
    evidence_type: IEA
    original_reference_id: GO_REF:0000043
    review:
      summary: >-
        RAD18 contains a RING finger domain and a UBZ (ubiquitin-binding zinc finger)
        domain,
        both of which coordinate zinc ions. The RING domain is essential for E3 ligase
        activity.
      action: ACCEPT
      reason: >-
        Zinc ion binding is structurally required for both the RING and UBZ domains.
        This is a valid molecular function annotation.
      supported_by:
        - reference_id: PMID:10884424
          supporting_text: "hRad18 protein binds to hHR6 protein through a conserved
            ring-finger motif"

  - term:
      id: GO:0016740
      label: transferase activity
    evidence_type: IEA
    original_reference_id: GO_REF:0000043
    review:
      summary: >-
        RAD18 has E3 ubiquitin ligase activity (EC 2.3.2.27), which is a type of transferase.
        However, this is a very general term.
      action: MODIFY
      reason: >-
        While technically correct, GO:0061630 (ubiquitin protein ligase activity)
        or
        GO:0004842 (ubiquitin-protein transferase activity) are more specific and
        informative.
      proposed_replacement_terms:
        - id: GO:0061630
          label: ubiquitin protein ligase activity

  - term:
      id: GO:0046872
      label: metal ion binding
    evidence_type: IEA
    original_reference_id: GO_REF:0000043
    review:
      summary: >-
        RAD18 binds zinc ions through its RING finger and UBZ domains. Metal ion binding
        is a parent term of zinc ion binding.
      action: ACCEPT
      reason: >-
        Correct but redundant with zinc ion binding annotation. Both are valid.

  - term:
      id: GO:0061630
      label: ubiquitin protein ligase activity
    evidence_type: IEA
    original_reference_id: GO_REF:0000120
    review:
      summary: >-
        RAD18 is a RING-type E3 ubiquitin ligase (EC 2.3.2.27). It catalyzes ubiquitin
        transfer
        from E2 RAD6 to substrate PCNA. This is the core molecular function of RAD18.
      action: ACCEPT
      reason: >-
        This is the primary molecular function annotation for RAD18 and accurately
        describes
        its enzymatic activity.
      supported_by:
        - reference_id: PMID:10884424
          supporting_text: "hRad18 protein binds to hHR6 protein through a conserved
            ring-finger motif"
        - reference_id: PMID:10908344
          supporting_text: "stable hRAD18-HHR6A and hRAD18-HHR6B protein complexes
            were identified and purified"

# Protein binding annotations - should be REMOVED per curation guidelines
  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:18316726
    review:
      summary: >-
        This annotation reflects RAD18 interaction with HLTF (Q14527). The study examined
        HLTF's role in PCNA polyubiquitination and showed RAD18-HLTF interaction.
      action: REMOVE
      reason: >-
        Per curation guidelines, GO:0005515 (protein binding) is uninformative and
        should
        be replaced with more specific terms. The RAD18-HLTF interaction is functionally
        relevant to DNA damage tolerance pathway.

      supported_by:
        - reference_id: PMID:18316726
          supporting_text: Human HLTF functions as a ubiquitin ligase for 
            proliferating cell nuclear antigen polyubiquitination.
  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:18719106
    review:
      summary: >-
        Another HLTF interaction annotation. HLTF and SHPRH are E3 ligases that interact
        with RAD18 for PCNA polyubiquitination.
      action: REMOVE
      reason: >-
        GO:0005515 is uninformative. The interaction with HLTF is relevant to RAD18's
        role in DNA damage tolerance but protein binding term lacks specificity.

      supported_by:
        - reference_id: PMID:18719106
          supporting_text: Polyubiquitination of proliferating cell nuclear 
            antigen by HLTF and SHPRH prevents genomic instability from stalled 
            replication forks.
  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:19549727
    review:
      summary: >-
        High-throughput E2 interaction network study. Shows RAD18 interaction with
        UBE2A (P49459)
        and UBE2B (P63146), its E2 partners.
      action: REMOVE
      reason: >-
        The RAD6 interaction is important but captured by Rad6-Rad18 complex annotation.
        Protein binding is too general.

      supported_by:
        - reference_id: PMID:19549727
          supporting_text: Analysis of the human E2 ubiquitin conjugating enzyme
            protein interaction network.
  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:21422291
    review:
      summary: >-
        Study on RAD18 promoting monoubiquitination rather than chain formation. Shows
        RAD18-UBE2B interaction.
      action: REMOVE
      reason: >-
        GO:0005515 is uninformative. The E2 interaction is captured by complex annotation.

      supported_by:
        - reference_id: PMID:21422291
          supporting_text: E3 ligase Rad18 promotes monoubiquitination rather 
            than ubiquitin chain formation by E2 enzyme Rad6.
  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:24981860
    review:
      summary: >-
        Chromatin-related protein interaction study. Shows RAD18-UBE2A interaction.
      action: REMOVE
      reason: >-
        GO:0005515 is uninformative. High-throughput interactome data.

      supported_by:
        - reference_id: PMID:24981860
          supporting_text: 2014 Jun 26. Human-chromatin-related protein 
            interactions identify a demethylase complex required for chromosome 
            segregation.
  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:25416956
    review:
      summary: >-
        Large-scale human interactome mapping. Shows RAD18 interaction with TAX1BP1
        (Q86VP1).
      action: REMOVE
      reason: >-
        GO:0005515 is uninformative. High-throughput interactome data.

      supported_by:
        - reference_id: PMID:25416956
          supporting_text: A proteome-scale map of the human interactome 
            network.
  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:26496610
    review:
      summary: >-
        Quantitative interactome study. Shows RAD18-UBE2A interaction.
      action: REMOVE
      reason: >-
        GO:0005515 is uninformative. Redundant with other E2 interaction annotations.

      supported_by:
        - reference_id: PMID:26496610
          supporting_text: Oct 22. A human interactome in three quantitative 
            dimensions organized by stoichiometries and abundances.
  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:28514442
    review:
      summary: >-
        Architecture of human interactome. Shows interactions with MAGEA3 (P43358)
        and UBE2B (P63146).
      action: REMOVE
      reason: >-
        GO:0005515 is uninformative. High-throughput interactome data.

      supported_by:
        - reference_id: PMID:28514442
          supporting_text: Architecture of the human interactome defines protein
            communities and disease networks.
  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:32296183
    review:
      summary: >-
        Reference map of human binary interactome. Shows multiple interactions including
        SA1 (O14737), MAGEA3, GOLGA2, ORC2, DAZAP1, TAX1BP1, NAPB.
      action: REMOVE
      reason: >-
        GO:0005515 is uninformative. High-throughput interactome data.

      supported_by:
        - reference_id: PMID:32296183
          supporting_text: Apr 8. A reference map of the human binary protein 
            interactome.
  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:32814053
    review:
      summary: >-
        Neurodegenerative disease interactome study. Shows interactions with ATXN1
        (P54253)
        and TARDBP (Q13148).
      action: REMOVE
      reason: >-
        GO:0005515 is uninformative. These interactions may not be functionally relevant
        to RAD18's core DNA damage tolerance function.

      supported_by:
        - reference_id: PMID:32814053
          supporting_text: Interactome Mapping Provides a Network of 
            Neurodegenerative Disease Proteins and Uncovers Widespread Protein 
            Aggregation in Affected Brains.
  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:33961781
    review:
      summary: >-
        Cell-specific interactome remodeling. Shows MAGEA3 and UBE2B interactions.
      action: REMOVE
      reason: >-
        GO:0005515 is uninformative. The UBE2B interaction is captured by complex
        annotation.

      supported_by:
        - reference_id: PMID:33961781
          supporting_text: 2021 May 6. Dual proteome-scale networks reveal 
            cell-specific remodeling of the human interactome.
  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:40205054
    review:
      summary: >-
        Multimodal cell maps study. Shows MAGEA3 interaction.
      action: REMOVE
      reason: >-
        GO:0005515 is uninformative.

# IDA annotations from HPA (Human Protein Atlas)
      supported_by:
        - reference_id: PMID:40205054
          supporting_text: Apr 9. Multimodal cell maps as a foundation for 
            structural and functional genomics.
  - term:
      id: GO:0005654
      label: nucleoplasm
    evidence_type: IDA
    original_reference_id: GO_REF:0000052
    review:
      summary: >-
        HPA immunofluorescence data showing RAD18 localization in nucleoplasm.
        Consistent with RAD18's nuclear function in DNA damage tolerance.
      action: ACCEPT
      reason: >-
        Nucleoplasm localization is consistent with RAD18's function at replication
        forks
        and DNA damage sites.

  - term:
      id: GO:0016604
      label: nuclear body
    evidence_type: IDA
    original_reference_id: GO_REF:0000052
    review:
      summary: >-
        HPA data showing RAD18 in nuclear bodies. RAD18 forms foci at DNA damage sites,
        consistent with this annotation.
      action: ACCEPT
      reason: >-
        Nuclear body localization is consistent with RAD18's DNA damage-induced foci
        formation.
      supported_by:
        - reference_id: PMID:22036607
          supporting_text: "this interaction, mediated via highly conserved serine
            residues on the RAD18 C terminus, is required for BRCTx accumulation at
            DNA damage sites"

  - term:
      id: GO:0016607
      label: nuclear speck
    evidence_type: IDA
    original_reference_id: GO_REF:0000052
    review:
      summary: >-
        HPA data showing RAD18 in nuclear specks. This may reflect RAD18 foci or
        storage/regulatory localization.
      action: ACCEPT
      reason: >-
        Consistent with nuclear localization data from HPA.

  - term:
      id: GO:0016567
      label: protein ubiquitination
    evidence_type: IEA
    original_reference_id: GO_REF:0000041
    review:
      summary: >-
        RAD18 catalyzes ubiquitination of PCNA. This is a parent term of protein
        monoubiquitination.
      action: ACCEPT
      reason: >-
        Correct but less specific than protein monoubiquitination. Both annotations
        are valid.

  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:35849344
    review:
      summary: >-
        LncRNA CTBP1-DT microprotein DDUP interaction study.
      action: REMOVE
      reason: >-
        GO:0005515 is uninformative.

# IDA annotations from specific publications
      supported_by:
        - reference_id: PMID:35849344
          supporting_text: LncRNA CTBP1-DT-encoded microprotein DDUP sustains 
            DNA damage response signalling to trigger dual DNA repair 
            mechanisms.
  - term:
      id: GO:0005634
      label: nucleus
    evidence_type: IDA
    original_reference_id: PMID:25023518
    review:
      summary: >-
        Zeman et al. 2014 showed RAD18 nuclear localization and formation of nuclear
        foci
        after DNA damage. The study demonstrates wild-type RAD18 forms detergent-resistant
        nuclear foci after MMS, UV, or ionizing radiation treatment.
      action: ACCEPT
      reason: >-
        Strong experimental evidence for nuclear localization. Core localization annotation.
      supported_by:
        - reference_id: PMID:25023518
          supporting_text: "Although wild-type Rad18 foci were observed after MMS
            treatment"

  - term:
      id: GO:0006974
      label: DNA damage response
    evidence_type: IDA
    original_reference_id: PMID:25023518
    review:
      summary: >-
        Zeman et al. 2014 comprehensively demonstrated RAD18's role in DNA damage
        response.
        RAD18 is deubiquitinated after MMS/H2O2 treatment, enabling interaction with
        SHPRH
        for error-free bypass.
      action: ACCEPT
      reason: >-
        Strong experimental support for RAD18's involvement in DNA damage response.
      supported_by:
        - reference_id: PMID:25023518
          supporting_text: "Upon exposure to MMS or H2O2, Rad18 is deubiquitinated,
            promoting a switch from Rad18β€’Ub–Rad18 complexes to Rad18–SHPRH complexes
            and error-free bypass of DNA lesions"

  - term:
      id: GO:0042802
      label: identical protein binding
    evidence_type: IDA
    original_reference_id: PMID:25023518
    review:
      summary: >-
        Zeman et al. 2014 demonstrated RAD18 homodimerization/self-interaction. The
        ubiquitinated form of RAD18 (Rad18-Ub) preferentially binds to non-ubiquitinated
        RAD18, and this interaction modulates RAD18 activity.
      action: ACCEPT
      reason: >-
        Self-interaction is experimentally demonstrated and functionally significant.
        This is more informative than generic protein binding.
      supported_by:
        - reference_id: PMID:25023518
          supporting_text: "Interestingly, Rad18β€’Ub also has a strong preference for
            binding to nonubiquitinated Rad18, suggesting that the ubiquitinated form
            may inhibit other Rad18 molecules in trans"

  - term:
      id: GO:0051865
      label: protein autoubiquitination
    evidence_type: IDA
    original_reference_id: PMID:25023518
    review:
      summary: >-
        RAD18 undergoes autoubiquitination with its E2 partner RAD6. Zeman et al.
        2014
        showed that ~25% of RAD18 exists in monoubiquitinated form, and this is enhanced
        by RAD6 co-expression.
      action: ACCEPT
      reason: >-
        Autoubiquitination is experimentally demonstrated and is an important regulatory
        mechanism for RAD18 activity.
      supported_by:
        - reference_id: PMID:25023518
          supporting_text: "Rad18 is monoubiquitinated in several different mammalian
            cell lines"

  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:22036607
    review:
      summary: >-
        RAD18-BRCTx (Q8R3P9) interaction. BRCTx is a RAD18-interacting protein.
      action: REMOVE
      reason: >-
        GO:0005515 is uninformative. The RAD18-BRCTx interaction is functionally relevant
        but should be captured by more specific terms.

      supported_by:
        - reference_id: PMID:22036607
          supporting_text: Epub 2011 Oct 28. RAD18-BRCTx interaction is required
            for efficient repair of UV-induced DNA damage.
  - term:
      id: GO:0005634
      label: nucleus
    evidence_type: IDA
    original_reference_id: PMID:15632077
    review:
      summary: >-
        Adams et al. 2005 showed BRCTx colocalizes with RAD18 in the nucleus.
      action: ACCEPT
      reason: >-
        Confirms nuclear localization.
      supported_by:
        - reference_id: PMID:15632077
          supporting_text: "BRCTx binds to the C terminus of hRAD18 in yeast two-hybrid
            and immunoprecipitation assays and colocalizes with this protein in the
            nucleus"

  - term:
      id: GO:0005634
      label: nucleus
    evidence_type: IDA
    original_reference_id: PMID:22036607
    review:
      summary: >-
        Liu et al. 2012 confirmed RAD18 nuclear localization during UV damage response.
      action: ACCEPT
      reason: >-
        Confirms nuclear localization.

      supported_by:
        - reference_id: PMID:22036607
          supporting_text: Epub 2011 Oct 28. RAD18-BRCTx interaction is required
            for efficient repair of UV-induced DNA damage.
  - term:
      id: GO:0005813
      label: centrosome
    evidence_type: IDA
    original_reference_id: PMID:15632077
    review:
      summary: >-
        Adams et al. 2005 showed BRCTx localizes to centrosome and interacts with
        RAD18.
        This suggests RAD18 may also localize to centrosome through BRCTx interaction.
      action: ACCEPT
      reason: >-
        Centrosome localization is supported by experimental evidence.
      supported_by:
        - reference_id: PMID:15632077
          supporting_text: "the BRCT domain of BRCTx is responsible for mediating
            its localization to the nucleus and centrosome in interphase cells"

  - term:
      id: GO:0006974
      label: DNA damage response
    evidence_type: IDA
    original_reference_id: PMID:22036607
    review:
      summary: >-
        Liu et al. 2012 demonstrated RAD18-BRCTx module is critical for UV-induced
        DNA damage repair.
      action: ACCEPT
      reason: >-
        Strong experimental support for DNA damage response involvement.
      supported_by:
        - reference_id: PMID:22036607
          supporting_text: "RAD18-BRCTx interaction is required for efficient repair
            of UV-induced DNA damage"

  - term:
      id: GO:0042405
      label: nuclear inclusion body
    evidence_type: IDA
    original_reference_id: PMID:22036607
    review:
      summary: >-
        Liu et al. 2012 showed RAD18 forms nuclear inclusion bodies during DNA damage.
      action: ACCEPT
      reason: >-
        Specific localization during DNA damage response.
      supported_by:
        - reference_id: PMID:22036607
          supporting_text: "this interaction, mediated via highly conserved serine
            residues on the RAD18 C terminus, is required for BRCTx accumulation at
            DNA damage sites"

  - term:
      id: GO:0044877
      label: protein-containing complex binding
    evidence_type: IPI
    original_reference_id: PMID:25931565
    review:
      summary: >-
        Raschle et al. 2015 identified SLF1 (Q8IY18) and SLF2 (Q96SB8) as forming
        a complex
        with RAD18 that recruits SMC5/6 to DNA lesions.
      action: ACCEPT
      reason: >-
        More informative than generic protein binding. RAD18 forms a complex with
        SLF1/SLF2 for SMC5/6 recruitment.
      supported_by:
        - reference_id: PMID:25931565
          supporting_text: "SLF1 and SLF2, which form a complex with RAD18 and together
            define a pathway that suppresses genome instability by recruiting the
            SMC5/6 cohesion complex to DNA lesions"

  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:25931565
    review:
      summary: >-
        Same study as above, shows interactions with ANKRD17 (Q8IX21) and ELF1 (Q9BQI6).
      action: REMOVE
      reason: >-
        GO:0005515 is uninformative. The more specific protein-containing complex
        binding
        annotation captures the SLF1/SLF2 interaction.

      supported_by:
        - reference_id: PMID:25931565
          supporting_text: Apr 30. DNA repair. Proteomics reveals dynamic 
            assembly of repair complexes during bypass of DNA cross-links.
  - term:
      id: GO:0006974
      label: DNA damage response
    evidence_type: IDA
    original_reference_id: PMID:25931565
    review:
      summary: >-
        Raschle et al. 2015 proteomics study of DNA repair during ICL bypass revealed
        RAD18's role in the DNA damage response.
      action: ACCEPT
      reason: >-
        Strong experimental support from systematic proteomics study.
      supported_by:
        - reference_id: PMID:25931565
          supporting_text: "define a pathway that suppresses genome instability by
            recruiting the SMC5/6 cohesion complex to DNA lesions"

  - term:
      id: GO:0035861
      label: site of double-strand break
    evidence_type: IDA
    original_reference_id: PMID:25931565
    review:
      summary: >-
        Raschle et al. 2015 showed RAD18 is recruited to DNA double-strand breaks
        as part of the repair complex assembly.
      action: ACCEPT
      reason: >-
        Specific localization to DSB sites during repair.
      supported_by:
        - reference_id: PMID:25931565
          supporting_text: "Among numerous prospective DNA repair factors, we identified
            SLF1 and SLF2, which form a complex with RAD18 and together define a pathway
            that suppresses genome instability by recruiting the SMC5/6 cohesion complex
            to DNA lesions"

  - term:
      id: GO:0051984
      label: positive regulation of chromosome segregation
    evidence_type: IMP
    original_reference_id: PMID:25931565
    review:
      summary: >-
        Raschle et al. 2015 showed RAD18-SLF1-SLF2 complex promotes genome stability,
        which includes proper chromosome segregation.
      action: KEEP_AS_NON_CORE
      reason: >-
        This is a downstream consequence of RAD18's DNA damage tolerance function
        rather than a core function. Keep as non-core.
      supported_by:
        - reference_id: PMID:25931565
          supporting_text: "define a pathway that suppresses genome instability"

# Reactome TAS annotations
  - term:
      id: GO:0005654
      label: nucleoplasm
    evidence_type: TAS
    original_reference_id: Reactome:R-HSA-5652005
    review:
      summary: >-
        Reactome annotation for RAD18:UBE2B complex binding to PCNA associated with
        damaged DNA.
      action: ACCEPT
      reason: >-
        Consistent with nucleoplasm localization.

  - term:
      id: GO:0005654
      label: nucleoplasm
    evidence_type: TAS
    original_reference_id: Reactome:R-HSA-5652009
    review:
      summary: >-
        Reactome annotation for RAD18:UBE2B monoubiquitinating PCNA.
      action: ACCEPT
      reason: >-
        Consistent with nucleoplasm localization for PCNA ubiquitination.

  - term:
      id: GO:0005654
      label: nucleoplasm
    evidence_type: TAS
    original_reference_id: Reactome:R-HSA-8943003
    review:
      summary: >-
        Reactome annotation for SHPRH polyubiquitinating monoubiquitinated PCNA (RAD18
        participates).
      action: ACCEPT
      reason: >-
        Consistent with nucleoplasm localization.

  - term:
      id: GO:0005654
      label: nucleoplasm
    evidence_type: TAS
    original_reference_id: Reactome:R-HSA-8943007
    review:
      summary: >-
        Reactome annotation for SHPRH binding monoUb-PCNA with RAD6:RAD18.
      action: ACCEPT
      reason: >-
        Consistent with nucleoplasm localization.

  - term:
      id: GO:0005654
      label: nucleoplasm
    evidence_type: TAS
    original_reference_id: Reactome:R-HSA-8943040
    review:
      summary: >-
        Reactome annotation for HLTF polyubiquitinating monoubiquitinated PCNA.
      action: ACCEPT
      reason: >-
        Consistent with nucleoplasm localization.

  - term:
      id: GO:0005654
      label: nucleoplasm
    evidence_type: TAS
    original_reference_id: Reactome:R-HSA-8943041
    review:
      summary: >-
        Reactome annotation for HLTF binding monoUb-PCNA with RAD6:RAD18.
      action: ACCEPT
      reason: >-
        Consistent with nucleoplasm localization.

  - term:
      id: GO:0031593
      label: polyubiquitin modification-dependent protein binding
    evidence_type: IDA
    original_reference_id: PMID:22742833
    review:
      summary: >-
        Panier et al. 2012 showed RAD18 accumulates at DSB sites through ubiquitin-binding
        domains (UBZ). RAD18's UBZ domain recognizes ubiquitinated chromatin for recruitment
        to damage sites.
      action: ACCEPT
      reason: >-
        This is a specific molecular function that describes how RAD18 is recruited
        to damage sites via ubiquitin recognition. More informative than generic protein
        binding.
      supported_by:
        - reference_id: PMID:22742833
          supporting_text: "RNF168, its paralog RNF169, RAD18, and the BRCA1-interacting
            RAP80 protein accumulate at DSB sites through the use of bipartite modules
            composed of UBDs juxtaposed to peptide motifs that provide specificity"

  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:22681887
    review:
      summary: >-
        Spartan/C1orf124 (Q9H040) interaction - a reader of PCNA ubiquitylation.
      action: REMOVE
      reason: >-
        GO:0005515 is uninformative.

      supported_by:
        - reference_id: PMID:22681887
          supporting_text: Spartan/C1orf124, a reader of PCNA ubiquitylation and
            a regulator of UV-induced DNA damage response.
  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:21659603
    review:
      summary: >-
        RHINO (Q9BSD3) interaction study.
      action: REMOVE
      reason: >-
        GO:0005515 is uninformative.

      supported_by:
        - reference_id: PMID:21659603
          supporting_text: A DNA damage response screen identifies RHINO, a 
            9-1-1 and TopBP1 interacting protein required for ATR signaling.
  - term:
      id: GO:0000403
      label: Y-form DNA binding
    evidence_type: IDA
    original_reference_id: PMID:18363965
    review:
      summary: >-
        Tsuji et al. 2008 directly demonstrated that RAD18-RAD6B complex preferentially
        binds to forked (Y-form) DNA structures at stalled replication forks.
      action: ACCEPT
      reason: >-
        This is a highly specific and experimentally validated molecular function.
        Y-form DNA binding is central to RAD18's recruitment to stalled forks.
      supported_by:
        - reference_id: PMID:18363965
          supporting_text: "Human RAD18 complexed with RAD6B protein preferentially
            binds to forked and single-stranded DNA (ssDNA) structures, which are
            known to be localized at stalled replication forks"

  - term:
      id: GO:0005657
      label: replication fork
    evidence_type: IDA
    original_reference_id: PMID:18363965
    review:
      summary: >-
        Tsuji et al. 2008 demonstrated RAD18-RAD6B recruitment to stalled replication
        forks
        via recognition of forked and ssDNA structures.
      action: ACCEPT
      reason: >-
        Replication fork localization is central to RAD18's function in DNA damage
        tolerance.
      supported_by:
        - reference_id: PMID:18363965
          supporting_text: "RAD18 complexed with RAD6B is recruited to stalled replication
            forks via interactions with forked DNA or long ssDNA structures"

  - term:
      id: GO:0031625
      label: ubiquitin protein ligase binding
    evidence_type: IPI
    original_reference_id: PMID:18363965
    review:
      summary: >-
        RAD18 binds to its E2 partner UBE2B (P63146/RAD6B). This is the E2 that provides
        ubiquitin for PCNA monoubiquitination.
      action: ACCEPT
      reason: >-
        Binding to E2 ubiquitin-conjugating enzyme is essential for E3 ligase function.
        This is more specific than generic protein binding.
      supported_by:
        - reference_id: PMID:18363965
          supporting_text: "RAD18 complexed with RAD6B protein"

  - term:
      id: GO:0031625
      label: ubiquitin protein ligase binding
    evidence_type: IPI
    original_reference_id: PMID:10908344
    review:
      summary: >-
        Xin et al. 2000 demonstrated human RAD18 interacts with both HHR6A (UBE2A/P49459)
        and HHR6B (UBE2B/P63146), forming stable complexes.
      action: ACCEPT
      reason: >-
        E2 binding is essential for RAD18's E3 ligase function.
      supported_by:
        - reference_id: PMID:10908344
          supporting_text: "Human RAD18 protein (hRAD18) was found to interact with
            HHR6A and HHR6B"

# NAS annotations from early characterization
  - term:
      id: GO:0003684
      label: damaged DNA binding
    evidence_type: NAS
    original_reference_id: PMID:10884424
    review:
      summary: >-
        Tateishi et al. 2000 characterized human RAD18 as involved in postreplication
        repair
        of damaged DNA. While not directly demonstrating damaged DNA binding, the
        function
        implies recognition of damage-associated structures.
      action: MODIFY
      reason: >-
        NAS evidence is weak. The more specific GO:0000403 (Y-form DNA binding) is
        supported
        by IDA evidence from PMID:18363965. RAD18 binds fork/ssDNA structures rather
        than
        damaged bases directly.
      proposed_replacement_terms:
        - id: GO:0000403
          label: Y-form DNA binding

      supported_by:
        - reference_id: PMID:10884424
          supporting_text: Dysfunction of human Rad18 results in defective 
            postreplication repair and hypersensitivity to multiple mutagens.
  - term:
      id: GO:0005634
      label: nucleus
    evidence_type: NAS
    original_reference_id: PMID:10884424
    review:
      summary: >-
        Early characterization paper. Nuclear localization is well-supported by
        later IDA evidence.
      action: ACCEPT
      reason: >-
        Consistent with IDA evidence from multiple studies.

      supported_by:
        - reference_id: PMID:10884424
          supporting_text: Dysfunction of human Rad18 results in defective 
            postreplication repair and hypersensitivity to multiple mutagens.
  - term:
      id: GO:0006281
      label: DNA repair
    evidence_type: NAS
    original_reference_id: PMID:10884424
    review:
      summary: >-
        Tateishi et al. 2000 showed dysfunction of RAD18 results in defective postreplication
        repair. DNA repair is accurate but DNA damage tolerance (GO:0006301) is more
        specific.
      action: ACCEPT
      reason: >-
        DNA repair as a parent term is not incorrect, even though DNA damage tolerance
        is more specific.
      supported_by:
        - reference_id: PMID:10884424
          supporting_text: "Dysfunction of human Rad18 results in defective postreplication
            repair"

references:
  - id: GO_REF:0000002
    title: Gene Ontology annotation through association of InterPro records with
      GO terms
    findings: []
  - id: GO_REF:0000033
    title: Annotation inferences using phylogenetic trees
    findings: []
  - id: GO_REF:0000041
    title: Gene Ontology annotation based on UniPathway vocabulary mapping
    findings: []
  - id: GO_REF:0000043
    title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword 
      mapping
    findings: []
  - id: GO_REF:0000044
    title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular 
      Location vocabulary mapping
    findings: []
  - id: GO_REF:0000052
    title: Gene Ontology annotation based on curation of immunofluorescence data
    findings: []
  - id: GO_REF:0000117
    title: Electronic Gene Ontology annotations created by ARBA machine learning
      models
    findings: []
  - id: GO_REF:0000120
    title: Combined Automated Annotation using Multiple IEA Methods
    findings: []
  - id: PMID:10884424
    title: Dysfunction of human Rad18 results in defective postreplication 
      repair and hypersensitivity to multiple mutagens.
    findings:
      - statement: RAD18 is essential for postreplication repair
      - statement: RAD18 dysfunction causes sensitivity to UV, MMS, and 
          mitomycin C
      - statement: RAD18 binds to RAD6 through conserved ring-finger motif
  - id: PMID:10908344
    title: The human RAD18 gene product interacts with HHR6A and HHR6B.
    findings:
      - statement: Human RAD18 forms stable complexes with UBE2A (HHR6A) and 
          UBE2B (HHR6B)
      - statement: RAD18 is ubiquitously expressed in human tissues
      - statement: RAD18 plays role in lesion bypass mechanisms
  - id: PMID:15632077
    title: BRCTx is a novel, highly conserved RAD18-interacting protein.
    findings:
      - statement: BRCTx binds to C-terminus of RAD18
      - statement: RAD18 and BRCTx colocalize in nucleus
      - statement: BRCTx localizes to nucleus and centrosome
  - id: PMID:18316726
    title: Human HLTF functions as a ubiquitin ligase for proliferating cell 
      nuclear antigen polyubiquitination.
    findings:
      - statement: HLTF interacts with RAD18
      - statement: HLTF extends PCNA monoubiquitination to polyubiquitination
  - id: PMID:18363965
    title: Recognition of forked and single-stranded DNA structures by human 
      RAD18 complexed with RAD6B protein triggers its recruitment to stalled 
      replication forks.
    findings:
      - statement: RAD18-RAD6B preferentially binds forked and ssDNA structures
      - statement: SAP domain (residues 248-282) is crucial for DNA binding
      - statement: SAP domain is required for efficient PCNA monoubiquitination
      - statement: RAD18 recruits Pol eta to stalled replication forks
  - id: PMID:18719106
    title: Polyubiquitination of proliferating cell nuclear antigen by HLTF and 
      SHPRH prevents genomic instability from stalled replication forks.
    findings:
      - statement: HLTF and SHPRH extend RAD18-mediated PCNA monoubiquitination
  - id: PMID:22036607
    title: RAD18-BRCTx interaction is required for efficient repair of 
      UV-induced DNA damage.
    findings:
      - statement: RAD18 interacts with BRCTx in phosphorylation-dependent 
          manner
      - statement: RAD18-BRCTx module is critical for UV damage repair
      - statement: RAD18 forms nuclear inclusion bodies
  - id: PMID:22681887
    title: Spartan/C1orf124, a reader of PCNA ubiquitylation and a regulator of 
      UV-induced DNA damage response.
    findings:
      - statement: Spartan reads RAD18-mediated PCNA ubiquitylation
  - id: PMID:22742833
    title: Tandem protein interaction modules organize the ubiquitin-dependent 
      response to DNA double-strand breaks.
    findings:
      - statement: RAD18 accumulates at DSB sites through UBD-LRM bipartite 
          modules
      - statement: RAD18 recognizes ubiquitinated chromatin via UBZ domain
  - id: PMID:25023518
    title: DNA damage-specific deubiquitination regulates Rad18 functions to 
      suppress mutagenesis.
    findings:
      - statement: RAD18 exists in monoubiquitinated and non-ubiquitinated forms
      - statement: RAD18 is deubiquitinated after MMS or H2O2 treatment
      - statement: Ubiquitinated RAD18 preferentially binds non-ubiquitinated 
          RAD18
      - statement: RAD18 deubiquitination promotes SHPRH interaction for 
          error-free bypass
      - statement: RAD18 forms nuclear foci after DNA damage
      - statement: RAD18 autoubiquitination is promoted by RAD6
  - id: PMID:25931565
    title: DNA repair. Proteomics reveals dynamic assembly of repair complexes 
      during bypass of DNA cross-links.
    findings:
      - statement: RAD18 forms complex with SLF1 and SLF2
      - statement: RAD18-SLF1-SLF2 recruits SMC5/6 to DNA lesions
      - statement: RAD18 suppresses genome instability at ICLs
  - id: PMID:19549727
    title: Analysis of the human E2 ubiquitin conjugating enzyme protein 
      interaction network.
    findings:
      - statement: High-throughput mapping of E2-E3 interactions
      - statement: RAD18 interacts with UBE2A and UBE2B
  - id: PMID:21422291
    title: E3 ligase Rad18 promotes monoubiquitination rather than ubiquitin 
      chain formation by E2 enzyme Rad6.
    findings:
      - statement: RAD18 promotes monoubiquitination rather than chain formation
  - id: PMID:24981860
    title: Human-chromatin-related protein interactions identify a demethylase 
      complex required for chromosome segregation.
    findings:
      - statement: Chromatin-related protein interaction study
  - id: PMID:25416956
    title: A proteome-scale map of the human interactome network.
    findings:
      - statement: Large-scale human interactome mapping
  - id: PMID:26496610
    title: A human interactome in three quantitative dimensions organized by 
      stoichiometries and abundances.
    findings:
      - statement: Quantitative interactome study of E2-E3 interactions
  - id: PMID:28514442
    title: "Architecture of the human interactome defines protein communities and disease networks."
    findings:
      - statement: Systematic mapping of human protein interactions
  - id: PMID:32296183
    title: A reference map of the human binary protein interactome.
    findings:
      - statement: Comprehensive binary interactome mapping
  - id: PMID:32814053
    title: Interactome Mapping Provides a Network of Neurodegenerative Disease 
      Proteins and Uncovers Widespread Protein Aggregation in Affected Brains.
    findings:
      - statement: Disease-related protein interaction network
  - id: PMID:33961781
    title: Dual proteome-scale networks reveal cell-specific remodeling of the 
      human interactome.
    findings:
      - statement: Cell-specific interactome changes
  - id: PMID:40205054
    title: Multimodal cell maps as a foundation for structural and functional 
      genomics.
    findings:
      - statement: Multimodal proteomics approach
  - id: PMID:35849344
    title: LncRNA CTBP1-DT-encoded microprotein DDUP sustains DNA damage 
      response signalling to trigger dual DNA repair mechanisms.
    findings:
      - statement: DDUP microprotein interacts with DNA repair machinery
  - id: PMID:21659603
    title: A DNA damage response screen identifies RHINO, a 9-1-1 and TopBP1 
      interacting protein required for ATR signaling.
    findings:
      - statement: RHINO as DNA damage response factor
  - id: Reactome:R-HSA-5652005
    title: RAD18:UBE2B or RBX1:CUL4:DDB1:DTL ubiquitin ligase complex binds 
      PCNA:POLD,POLE:RPA:RFC associated with damaged dsDNA
    findings: []
  - id: Reactome:R-HSA-5652009
    title: RAD18:UBE2B or RBX1:CUL4:DDB1:DTL monoubiquitinates PCNA
    findings: []
  - id: Reactome:R-HSA-8943003
    title: SHPRH polyubiquitinates monoubiquitinated PCNA
    findings: []
  - id: Reactome:R-HSA-8943007
    title: SHPRH binds monoUb-K164-PCNA, RAD6:RAD18, UBE2V2:Ub:UBE2N
    findings: []
  - id: Reactome:R-HSA-8943040
    title: HLTF polyubiquitinates monoubiquitinated PCNA
    findings: []
  - id: Reactome:R-HSA-8943041
    title: HLTF binds monoUb-K164-PCNA, RAD6:RAD18, UBE2V2:Ub:UBE2N
    findings: []
  - id: file:human/RAD18/RAD18-deep-research-falcon.md
    title: Deep research report on RAD18
    findings: []
  - id: file:human/RAD18/RAD18-deep-research-cyberian.md
    title: Cyberian deep research on RAD18 function
    findings: []

core_functions:
  - description: >-
      RAD18 is a RING-type E3 ubiquitin ligase (EC 2.3.2.27) that, with its E2 partner
      RAD6
      (UBE2A/UBE2B), catalyzes monoubiquitination of PCNA at Lys164. Core enzymatic
      function
      supported by multiple studies (PMID:10884424, PMID:18363965, PMID:25023518).
    molecular_function:
      id: GO:0061630
      label: ubiquitin protein ligase activity
    directly_involved_in:
      - id: GO:0006513
        label: protein monoubiquitination
      - id: GO:0006301
        label: DNA damage tolerance
    locations:
      - id: GO:0005634
        label: nucleus
      - id: GO:0005657
        label: replication fork
    in_complex:
      id: GO:0097505
      label: Rad6-Rad18 complex

  - description: >-
      RAD18-RAD6B complex preferentially binds forked and ssDNA structures at stalled
      replication forks. The SAP domain is essential for DNA binding and fork recruitment.
      Directly demonstrated by PMID:18363965.
    molecular_function:
      id: GO:0000403
      label: Y-form DNA binding
    directly_involved_in:
      - id: GO:0006974
        label: DNA damage response
    locations:
      - id: GO:0005657
        label: replication fork