TODO: Add description for RARA
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0000122
negative regulation of transcription by RNA polymerase II
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0004879
nuclear receptor activity
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005634
nucleus
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0030154
cell differentiation
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0045944
positive regulation of transcription by RNA polymerase II
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0090575
RNA polymerase II transcription regulator complex
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0000978
RNA polymerase II cis-regulatory region sequence-specific DNA binding
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0048384
retinoic acid receptor signaling pathway
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0003677
DNA binding
|
IEA
GO_REF:0000120 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0003700
DNA-binding transcription factor activity
|
IEA
GO_REF:0000120 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0004879
nuclear receptor activity
|
IEA
GO_REF:0000120 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005634
nucleus
|
IEA
GO_REF:0000120 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
IEA
GO_REF:0000117 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005737
cytoplasm
|
IEA
GO_REF:0000120 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0006355
regulation of DNA-templated transcription
|
IEA
GO_REF:0000002 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0008270
zinc ion binding
|
IEA
GO_REF:0000120 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0043565
sequence-specific DNA binding
|
IEA
GO_REF:0000120 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0046872
metal ion binding
|
IEA
GO_REF:0000043 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0048384
retinoic acid receptor signaling pathway
|
IEA
GO_REF:0000002 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:1990837
sequence-specific double-stranded DNA binding
|
IEA
GO_REF:0000117 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005515
protein binding
|
IPI
PMID:10698945 Structure of the RXR-RAR DNA-binding complex on the retinoic... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:10698945
Structure of the RXR-RAR DNA-binding complex on the retinoic acid response element DR1.
|
|
GO:0005515
protein binding
|
IPI
PMID:16189514 Towards a proteome-scale map of the human protein-protein in... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:16189514
Towards a proteome-scale map of the human protein-protein interaction network.
|
|
GO:0005515
protein binding
|
IPI
PMID:16456540 P38MAPK-dependent phosphorylation and degradation of SRC-3/A... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:16456540
P38MAPK-dependent phosphorylation and degradation of SRC-3/AIB1 and RARalpha-mediated transcription.
|
|
GO:0005515
protein binding
|
IPI
PMID:16606617 Additional sex comb-like 1 (ASXL1), in cooperation with SRC-... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:16606617
2006 Apr 10. Additional sex comb-like 1 (ASXL1), in cooperation with SRC-1, acts as a ligand-dependent coactivator for retinoic acid receptor.
|
|
GO:0005515
protein binding
|
IPI
PMID:16769902 Phosphorylation by PKA potentiates retinoic acid receptor al... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:16769902
Phosphorylation by PKA potentiates retinoic acid receptor alpha activity by means of increasing interaction with and phosphorylation by cyclin H/cdk7.
|
|
GO:0005515
protein binding
|
IPI
PMID:17560333 Role of the polycomb repressive complex 2 in acute promyeloc... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:17560333
Role of the polycomb repressive complex 2 in acute promyelocytic leukemia.
|
|
GO:0005515
protein binding
|
IPI
PMID:17641689 MED25 is distinct from TRAP220/MED1 in cooperating with CBP ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:17641689
Jul 19. MED25 is distinct from TRAP220/MED1 in cooperating with CBP for retinoid receptor activation.
|
|
GO:0005515
protein binding
|
IPI
PMID:18048326 Identification of retinoic acid as an inhibitor of transcrip... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:18048326
Identification of retinoic acid as an inhibitor of transcription factor Nrf2 through activation of retinoic acid receptor alpha.
|
|
GO:0005515
protein binding
|
IPI
PMID:19345331 ZNF423 is critically required for retinoic acid-induced diff... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:19345331
ZNF423 is critically required for retinoic acid-induced differentiation and is a marker of neuroblastoma outcome.
|
|
GO:0005515
protein binding
|
IPI
PMID:19934264 Reciprocal roles of SIRT1 and SKIP in the regulation of RAR ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:19934264
Nov 24. Reciprocal roles of SIRT1 and SKIP in the regulation of RAR activity: implication in the retinoic acid-induced neuronal differentiation of P19 cells.
|
|
GO:0005515
protein binding
|
IPI
PMID:20133701 LIM protein Ajuba functions as a nuclear receptor corepresso... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20133701
LIM protein Ajuba functions as a nuclear receptor corepressor and negatively regulates retinoic acid signaling.
|
|
GO:0005515
protein binding
|
IPI
PMID:20211142 An atlas of combinatorial transcriptional regulation in mous... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20211142
An atlas of combinatorial transcriptional regulation in mouse and man.
|
|
GO:0005515
protein binding
|
IPI
PMID:20543827 A unique secondary-structure switch controls constitutive ge... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20543827
Jun 13. A unique secondary-structure switch controls constitutive gene repression by retinoic acid receptor.
|
|
GO:0005515
protein binding
|
IPI
PMID:21478865 Common architecture of nuclear receptor heterodimers on DNA ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:21478865
Apr 10. Common architecture of nuclear receptor heterodimers on DNA direct repeat elements with different spacings.
|
|
GO:0005515
protein binding
|
IPI
PMID:21516116 Next-generation sequencing to generate interactome datasets. |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:21516116
Next-generation sequencing to generate interactome datasets.
|
|
GO:0005515
protein binding
|
IPI
PMID:21988832 Toward an understanding of the protein interaction network o... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:21988832
Toward an understanding of the protein interaction network of the human liver.
|
|
GO:0005515
protein binding
|
IPI
PMID:22056876 A retinoic acid receptor RARΞ± pool present in membrane lipid... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:22056876
A retinoic acid receptor RARΞ± pool present in membrane lipid rafts forms complexes with G protein Ξ±Q to activate p38MAPK.
|
|
GO:0005515
protein binding
|
IPI
PMID:22351778 Familial focal segmental glomerulosclerosis (FSGS)-linked Ξ±-... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:22351778
2012 Feb 17. Familial focal segmental glomerulosclerosis (FSGS)-linked Ξ±-actinin 4 (ACTN4) protein mutants lose ability to activate transcription by nuclear hormone receptors.
|
|
GO:0005515
protein binding
|
IPI
PMID:23518351 The histone demethylase PHF8 governs retinoic acid response ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:23518351
The histone demethylase PHF8 governs retinoic acid response in acute promyelocytic leukemia.
|
|
GO:0005515
protein binding
|
IPI
PMID:23693014 Activation of Akt pathway by transcription-independent mecha... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:23693014
Activation of Akt pathway by transcription-independent mechanisms of retinoic acid promotes survival and invasion in lung cancer cells.
|
|
GO:0005515
protein binding
|
IPI
PMID:24819975 Small ubiquitin-related modifier-1 modification regulates al... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:24819975
Small ubiquitin-related modifier-1 modification regulates all-trans-retinoic acid-induced differentiation via stabilization of retinoic acid receptor Ξ±.
|
|
GO:0005515
protein binding
|
IPI
PMID:25036637 A quantitative chaperone interaction network reveals the arc... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:25036637
A quantitative chaperone interaction network reveals the architecture of cellular protein homeostasis pathways.
|
|
GO:0005515
protein binding
|
IPI
PMID:25241761 Using an in situ proximity ligation assay to systematically ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:25241761
Oct 9. Using an in situ proximity ligation assay to systematically profile endogenous protein-protein interactions in a pathway network.
|
|
GO:0005515
protein binding
|
IPI
PMID:25303530 Enhancer activation requires trans-recruitment of a mega tra... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:25303530
Enhancer activation requires trans-recruitment of a mega transcription factor complex.
|
|
GO:0005515
protein binding
|
IPI
PMID:25416956 A proteome-scale map of the human interactome network. |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:25416956
A proteome-scale map of the human interactome network.
|
|
GO:0005515
protein binding
|
IPI
PMID:26871637 Widespread Expansion of Protein Interaction Capabilities by ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:26871637
Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing.
|
|
GO:0005515
protein binding
|
IPI
PMID:29892012 An interactome perturbation framework prioritizes damaging m... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:29892012
Jun 11. An interactome perturbation framework prioritizes damaging missense mutations for developmental disorders.
|
|
GO:0005515
protein binding
|
IPI
PMID:31515488 Extensive disruption of protein interactions by genetic vari... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:31515488
Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations.
|
|
GO:0005515
protein binding
|
IPI
PMID:32296183 A reference map of the human binary protein interactome. |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:32296183
Apr 8. A reference map of the human binary protein interactome.
|
|
GO:0005515
protein binding
|
IPI
PMID:35512704 Systematic discovery of mutation-directed neo-protein-protei... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:35512704
2022 May 4. Systematic discovery of mutation-directed neo-protein-protein interactions in cancer.
|
|
GO:0005515
protein binding
|
IPI
PMID:9653119 The TRAP220 component of a thyroid hormone receptor- associa... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:9653119
The TRAP220 component of a thyroid hormone receptor- associated protein (TRAP) coactivator complex interacts directly with nuclear receptors in a ligand-dependent fashion.
|
|
GO:0000900
mRNA regulatory element binding translation repressor activity
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0000976
transcription cis-regulatory region binding
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0000977
RNA polymerase II transcription regulatory region sequence-specific DNA binding
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0001223
transcription coactivator binding
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0001889
liver development
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0007281
germ cell development
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0007565
female pregnancy
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0008285
negative regulation of cell population proliferation
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0008584
male gonad development
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0010628
positive regulation of gene expression
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0017148
negative regulation of translation
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0021766
hippocampus development
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0030425
dendrite
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0030850
prostate gland development
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0031641
regulation of myelination
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0032355
response to estradiol
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0033189
response to vitamin A
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0034097
response to cytokine
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0042826
histone deacetylase binding
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0042981
regulation of apoptotic process
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0045471
response to ethanol
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0045666
positive regulation of neuron differentiation
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0048027
mRNA 5'-UTR binding
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0048167
regulation of synaptic plasticity
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0048471
perinuclear region of cytoplasm
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0060010
Sertoli cell fate commitment
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0071222
cellular response to lipopolysaccharide
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:1901363
heterocyclic compound binding
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
IDA
GO_REF:0000052 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005730
nucleolus
|
IDA
GO_REF:0000052 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005829
cytosol
|
IDA
GO_REF:0000052 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0042789
mRNA transcription by RNA polymerase II
|
IDA
PMID:1310351 Retinoid X receptor interacts with nuclear receptors in reti... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:1310351
Retinoid X receptor interacts with nuclear receptors in retinoic acid, thyroid hormone and vitamin D3 signalling.
|
|
GO:0042789
mRNA transcription by RNA polymerase II
|
NAS
PMID:9430642 The coactivator TIF2 contains three nuclear receptor-binding... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:9430642
The coactivator TIF2 contains three nuclear receptor-binding motifs and mediates transactivation through CBP binding-dependent and -independent pathways.
|
|
GO:0045944
positive regulation of transcription by RNA polymerase II
|
IDA
PMID:9430642 The coactivator TIF2 contains three nuclear receptor-binding... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:9430642
The coactivator TIF2 contains three nuclear receptor-binding motifs and mediates transactivation through CBP binding-dependent and -independent pathways.
|
|
GO:0000785
chromatin
|
IDA
PMID:2825025 A human retinoic acid receptor which belongs to the family o... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:2825025
A human retinoic acid receptor which belongs to the family of nuclear receptors.
|
|
GO:0004879
nuclear receptor activity
|
IDA
PMID:2825025 A human retinoic acid receptor which belongs to the family o... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:2825025
A human retinoic acid receptor which belongs to the family of nuclear receptors.
|
|
GO:0005886
plasma membrane
|
IDA
PMID:2825025 A human retinoic acid receptor which belongs to the family o... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:2825025
A human retinoic acid receptor which belongs to the family of nuclear receptors.
|
|
GO:0048384
retinoic acid receptor signaling pathway
|
IDA
PMID:2825025 A human retinoic acid receptor which belongs to the family o... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:2825025
A human retinoic acid receptor which belongs to the family of nuclear receptors.
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-4341072 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0000978
RNA polymerase II cis-regulatory region sequence-specific DNA binding
|
IDA
PMID:21131358 Induction of miR-21 by retinoic acid in estrogen receptor-po... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:21131358
2010 Dec 3. Induction of miR-21 by retinoic acid in estrogen receptor-positive breast carcinoma cells: biological correlates and molecular targets.
|
|
GO:0000978
RNA polymerase II cis-regulatory region sequence-specific DNA binding
|
IMP
PMID:28122350 Transcriptional suppression of microRNA-27a contributes to l... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:28122350
Transcriptional suppression of microRNA-27a contributes to laryngeal cancer differentiation via GSK-3Ξ²-involved Wnt/Ξ²-catenin pathway.
|
|
GO:0001217
DNA-binding transcription repressor activity
|
IMP
PMID:28122350 Transcriptional suppression of microRNA-27a contributes to l... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:28122350
Transcriptional suppression of microRNA-27a contributes to laryngeal cancer differentiation via GSK-3Ξ²-involved Wnt/Ξ²-catenin pathway.
|
|
GO:0071300
cellular response to retinoic acid
|
IMP
PMID:28122350 Transcriptional suppression of microRNA-27a contributes to l... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:28122350
Transcriptional suppression of microRNA-27a contributes to laryngeal cancer differentiation via GSK-3Ξ²-involved Wnt/Ξ²-catenin pathway.
|
|
GO:1902894
negative regulation of miRNA transcription
|
IMP
PMID:28122350 Transcriptional suppression of microRNA-27a contributes to l... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:28122350
Transcriptional suppression of microRNA-27a contributes to laryngeal cancer differentiation via GSK-3Ξ²-involved Wnt/Ξ²-catenin pathway.
|
|
GO:0001223
transcription coactivator binding
|
IPI
PMID:17641689 MED25 is distinct from TRAP220/MED1 in cooperating with CBP ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:17641689
Jul 19. MED25 is distinct from TRAP220/MED1 in cooperating with CBP for retinoid receptor activation.
|
|
GO:0045944
positive regulation of transcription by RNA polymerase II
|
IDA
PMID:21131358 Induction of miR-21 by retinoic acid in estrogen receptor-po... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:21131358
2010 Dec 3. Induction of miR-21 by retinoic acid in estrogen receptor-positive breast carcinoma cells: biological correlates and molecular targets.
|
|
GO:1990837
sequence-specific double-stranded DNA binding
|
IDA
PMID:28473536 Impact of cytosine methylation on DNA binding specificities ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:28473536
Impact of cytosine methylation on DNA binding specificities of human transcription factors.
|
|
GO:0000977
RNA polymerase II transcription regulatory region sequence-specific DNA binding
|
IDA
PMID:19917671 Loss of CAK phosphorylation of RAR{alpha} mediates transcrip... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:19917671
Loss of CAK phosphorylation of RAR{alpha} mediates transcriptional control of retinoid-induced cancer cell differentiation.
|
|
GO:0000978
RNA polymerase II cis-regulatory region sequence-specific DNA binding
|
IDA
PMID:20080953 Cooperative interaction between retinoic acid receptor-alpha... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20080953
Cooperative interaction between retinoic acid receptor-alpha and estrogen receptor in breast cancer.
|
|
GO:0003682
chromatin binding
|
IDA
PMID:20080953 Cooperative interaction between retinoic acid receptor-alpha... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20080953
Cooperative interaction between retinoic acid receptor-alpha and estrogen receptor in breast cancer.
|
|
GO:0032991
protein-containing complex
|
IDA
PMID:19917671 Loss of CAK phosphorylation of RAR{alpha} mediates transcrip... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:19917671
Loss of CAK phosphorylation of RAR{alpha} mediates transcriptional control of retinoid-induced cancer cell differentiation.
|
|
GO:0032991
protein-containing complex
|
IDA
PMID:20080953 Cooperative interaction between retinoic acid receptor-alpha... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20080953
Cooperative interaction between retinoic acid receptor-alpha and estrogen receptor in breast cancer.
|
|
GO:0048384
retinoic acid receptor signaling pathway
|
IDA
PMID:19917671 Loss of CAK phosphorylation of RAR{alpha} mediates transcrip... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:19917671
Loss of CAK phosphorylation of RAR{alpha} mediates transcriptional control of retinoid-induced cancer cell differentiation.
|
|
GO:0045944
positive regulation of transcription by RNA polymerase II
|
IDA
PMID:19917671 Loss of CAK phosphorylation of RAR{alpha} mediates transcrip... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:19917671
Loss of CAK phosphorylation of RAR{alpha} mediates transcriptional control of retinoid-induced cancer cell differentiation.
|
|
GO:0000785
chromatin
|
IDA
PMID:21131358 Induction of miR-21 by retinoic acid in estrogen receptor-po... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:21131358
2010 Dec 3. Induction of miR-21 by retinoic acid in estrogen receptor-positive breast carcinoma cells: biological correlates and molecular targets.
|
|
GO:0004879
nuclear receptor activity
|
IDA
PMID:21131358 Induction of miR-21 by retinoic acid in estrogen receptor-po... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:21131358
2010 Dec 3. Induction of miR-21 by retinoic acid in estrogen receptor-positive breast carcinoma cells: biological correlates and molecular targets.
|
|
GO:0000785
chromatin
|
ISA
GO_REF:0000113 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0000981
DNA-binding transcription factor activity, RNA polymerase II-specific
|
ISA
GO_REF:0000113 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0051393
alpha-actinin binding
|
IPI
PMID:22351778 Familial focal segmental glomerulosclerosis (FSGS)-linked Ξ±-... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:22351778
2012 Feb 17. Familial focal segmental glomerulosclerosis (FSGS)-linked Ξ±-actinin 4 (ACTN4) protein mutants lose ability to activate transcription by nuclear hormone receptors.
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-5334854 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-5634103 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-9009817 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-376419 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-382096 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-9617067 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-9860125 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0043422
protein kinase B binding
|
IPI
PMID:16417524 Akt phosphorylates and suppresses the transactivation of ret... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:16417524
Akt phosphorylates and suppresses the transactivation of retinoic acid receptor alpha.
|
|
GO:0051018
protein kinase A binding
|
IDA
PMID:20215566 Activity of retinoic acid receptor-alpha is directly regulat... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20215566
Mar 9. Activity of retinoic acid receptor-alpha is directly regulated at its protein kinase A sites in response to follicle-stimulating hormone signaling.
|
|
GO:0000785
chromatin
|
IDA
PMID:17363140 The core component of the mammalian SWI/SNF complex SMARCD3/... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:17363140
The core component of the mammalian SWI/SNF complex SMARCD3/BAF60c is a coactivator for the nuclear retinoic acid receptor.
|
|
GO:0005515
protein binding
|
IPI
PMID:17363140 The core component of the mammalian SWI/SNF complex SMARCD3/... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:17363140
The core component of the mammalian SWI/SNF complex SMARCD3/BAF60c is a coactivator for the nuclear retinoic acid receptor.
|
|
GO:0019899
enzyme binding
|
IPI
PMID:12039952 Identification of protein arginine methyltransferase 2 as a ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:12039952
2002 May 30. Identification of protein arginine methyltransferase 2 as a coactivator for estrogen receptor alpha.
|
|
GO:0044323
retinoic acid-responsive element binding
|
IDA
PMID:19917671 Loss of CAK phosphorylation of RAR{alpha} mediates transcrip... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:19917671
Loss of CAK phosphorylation of RAR{alpha} mediates transcriptional control of retinoid-induced cancer cell differentiation.
|
|
GO:0019899
enzyme binding
|
IPI
PMID:9628876 Two distinct nuclear receptor interaction domains in NSD1, a... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:9628876
Two distinct nuclear receptor interaction domains in NSD1, a novel SET protein that exhibits characteristics of both corepressors and coactivators.
|
|
GO:0003700
DNA-binding transcription factor activity
|
IDA
PMID:18922886 Retinoic acid-dependent activation of the polycystic kidney ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:18922886
Retinoic acid-dependent activation of the polycystic kidney disease-1 (PKD1) promoter.
|
|
GO:0005515
protein binding
|
IPI
PMID:19917671 Loss of CAK phosphorylation of RAR{alpha} mediates transcrip... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:19917671
Loss of CAK phosphorylation of RAR{alpha} mediates transcriptional control of retinoid-induced cancer cell differentiation.
|
|
GO:0005634
nucleus
|
IDA
PMID:18845237 Retinoic acid regulates the human methionine sulfoxide reduc... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:18845237
Oct 25. Retinoic acid regulates the human methionine sulfoxide reductase A (MSRA) gene via two distinct promoters.
|
|
GO:0005634
nucleus
|
IDA
PMID:19917671 Loss of CAK phosphorylation of RAR{alpha} mediates transcrip... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:19917671
Loss of CAK phosphorylation of RAR{alpha} mediates transcriptional control of retinoid-induced cancer cell differentiation.
|
|
GO:0030853
negative regulation of granulocyte differentiation
|
IDA
PMID:19917671 Loss of CAK phosphorylation of RAR{alpha} mediates transcrip... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:19917671
Loss of CAK phosphorylation of RAR{alpha} mediates transcriptional control of retinoid-induced cancer cell differentiation.
|
|
GO:0031490
chromatin DNA binding
|
IDA
PMID:19917671 Loss of CAK phosphorylation of RAR{alpha} mediates transcrip... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:19917671
Loss of CAK phosphorylation of RAR{alpha} mediates transcriptional control of retinoid-induced cancer cell differentiation.
|
|
GO:0045893
positive regulation of DNA-templated transcription
|
IDA
PMID:18845237 Retinoic acid regulates the human methionine sulfoxide reduc... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:18845237
Oct 25. Retinoic acid regulates the human methionine sulfoxide reductase A (MSRA) gene via two distinct promoters.
|
|
GO:0005515
protein binding
|
IPI
PMID:19850744 Small ubiquitin-like modifier-2 modification of retinoic aci... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:19850744
Oct 22. Small ubiquitin-like modifier-2 modification of retinoic acid receptor-alpha regulates its subcellular localization and transcriptional activity.
|
|
GO:0005737
cytoplasm
|
IDA
PMID:19850744 Small ubiquitin-like modifier-2 modification of retinoic aci... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:19850744
Oct 22. Small ubiquitin-like modifier-2 modification of retinoic acid receptor-alpha regulates its subcellular localization and transcriptional activity.
|
|
GO:0006468
protein phosphorylation
|
IMP
PMID:16456540 P38MAPK-dependent phosphorylation and degradation of SRC-3/A... |
REMOVE |
Summary: MISANNOTATION: RARA is a nuclear hormone receptor (retinoic acid receptor) that functions as a ligand-activated transcription factor. PMID:16456540 describes "P38MAPK-dependent phosphorylation and degradation of SRC-3/AIB1" - p38MAPK is the kinase that phosphorylates SRC-3 coactivator, NOT RARA. RARA provides the context for this phosphorylation but does not perform it. UniProt confirms RARA "is phosphorylated by AKT1" and "Phosphorylated by PKA" - RARA is a SUBSTRATE of kinases, not a kinase itself. RARA has no kinase activity (belongs to NR1 nuclear hormone receptor subfamily).
Supporting Evidence:
PMID:16456540
P38MAPK-dependent phosphorylation and degradation of SRC-3/AIB1 and RARalpha-mediated transcription.
|
|
GO:0043277
apoptotic cell clearance
|
IMP
PMID:19628791 Induction of transglutaminase 2 by a liver X receptor/retino... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:19628791
2009 Jul 23. Induction of transglutaminase 2 by a liver X receptor/retinoic acid receptor alpha pathway increases the clearance of apoptotic cells by human macrophages.
|
|
GO:0045893
positive regulation of DNA-templated transcription
|
IDA
PMID:19850744 Small ubiquitin-like modifier-2 modification of retinoic aci... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:19850744
Oct 22. Small ubiquitin-like modifier-2 modification of retinoic acid receptor-alpha regulates its subcellular localization and transcriptional activity.
|
|
GO:0045944
positive regulation of transcription by RNA polymerase II
|
IDA
PMID:19850744 Small ubiquitin-like modifier-2 modification of retinoic aci... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:19850744
Oct 22. Small ubiquitin-like modifier-2 modification of retinoic acid receptor-alpha regulates its subcellular localization and transcriptional activity.
|
|
GO:0045893
positive regulation of DNA-templated transcription
|
IMP
PMID:19628791 Induction of transglutaminase 2 by a liver X receptor/retino... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:19628791
2009 Jul 23. Induction of transglutaminase 2 by a liver X receptor/retinoic acid receptor alpha pathway increases the clearance of apoptotic cells by human macrophages.
|
|
GO:0005102
signaling receptor binding
|
IDA
PMID:19628791 Induction of transglutaminase 2 by a liver X receptor/retino... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:19628791
2009 Jul 23. Induction of transglutaminase 2 by a liver X receptor/retinoic acid receptor alpha pathway increases the clearance of apoptotic cells by human macrophages.
|
|
GO:0019904
protein domain specific binding
|
IPI
PMID:20413580 Human ADA3 regulates RARalpha transcriptional activity throu... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20413580
2010 Apr 22. Human ADA3 regulates RARalpha transcriptional activity through direct contact between LxxLL motifs and the receptor coactivator pocket.
|
|
GO:0003700
DNA-binding transcription factor activity
|
IDA
PMID:20413580 Human ADA3 regulates RARalpha transcriptional activity throu... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20413580
2010 Apr 22. Human ADA3 regulates RARalpha transcriptional activity through direct contact between LxxLL motifs and the receptor coactivator pocket.
|
|
GO:0005515
protein binding
|
IPI
PMID:20080953 Cooperative interaction between retinoic acid receptor-alpha... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20080953
Cooperative interaction between retinoic acid receptor-alpha and estrogen receptor in breast cancer.
|
|
GO:0005634
nucleus
|
IDA
PMID:20080953 Cooperative interaction between retinoic acid receptor-alpha... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20080953
Cooperative interaction between retinoic acid receptor-alpha and estrogen receptor in breast cancer.
|
|
GO:0008284
positive regulation of cell population proliferation
|
IMP
PMID:20080953 Cooperative interaction between retinoic acid receptor-alpha... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20080953
Cooperative interaction between retinoic acid receptor-alpha and estrogen receptor in breast cancer.
|
|
GO:0045787
positive regulation of cell cycle
|
IMP
PMID:20080953 Cooperative interaction between retinoic acid receptor-alpha... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20080953
Cooperative interaction between retinoic acid receptor-alpha and estrogen receptor in breast cancer.
|
|
GO:0045892
negative regulation of DNA-templated transcription
|
IDA
PMID:20080953 Cooperative interaction between retinoic acid receptor-alpha... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20080953
Cooperative interaction between retinoic acid receptor-alpha and estrogen receptor in breast cancer.
|
|
GO:0045893
positive regulation of DNA-templated transcription
|
IDA
PMID:20080953 Cooperative interaction between retinoic acid receptor-alpha... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20080953
Cooperative interaction between retinoic acid receptor-alpha and estrogen receptor in breast cancer.
|
|
GO:0045944
positive regulation of transcription by RNA polymerase II
|
IMP
PMID:20080953 Cooperative interaction between retinoic acid receptor-alpha... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20080953
Cooperative interaction between retinoic acid receptor-alpha and estrogen receptor in breast cancer.
|
|
GO:0051099
positive regulation of binding
|
IMP
PMID:20080953 Cooperative interaction between retinoic acid receptor-alpha... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20080953
Cooperative interaction between retinoic acid receptor-alpha and estrogen receptor in breast cancer.
|
|
GO:0071391
cellular response to estrogen stimulus
|
IDA
PMID:20080953 Cooperative interaction between retinoic acid receptor-alpha... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20080953
Cooperative interaction between retinoic acid receptor-alpha and estrogen receptor in breast cancer.
|
|
GO:0001972
retinoic acid binding
|
IDA
PMID:2825025 A human retinoic acid receptor which belongs to the family o... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:2825025
A human retinoic acid receptor which belongs to the family of nuclear receptors.
|
|
GO:0032689
negative regulation of type II interferon production
|
IDA
PMID:18416830 The Retinoic Acid Receptor-alpha mediates human T-cell activ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:18416830
The Retinoic Acid Receptor-alpha mediates human T-cell activation and Th2 cytokine and chemokine production.
|
|
GO:0032720
negative regulation of tumor necrosis factor production
|
IDA
PMID:18416830 The Retinoic Acid Receptor-alpha mediates human T-cell activ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:18416830
The Retinoic Acid Receptor-alpha mediates human T-cell activation and Th2 cytokine and chemokine production.
|
|
GO:0032736
positive regulation of interleukin-13 production
|
IDA
PMID:18416830 The Retinoic Acid Receptor-alpha mediates human T-cell activ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:18416830
The Retinoic Acid Receptor-alpha mediates human T-cell activation and Th2 cytokine and chemokine production.
|
|
GO:0032753
positive regulation of interleukin-4 production
|
IDA
PMID:18416830 The Retinoic Acid Receptor-alpha mediates human T-cell activ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:18416830
The Retinoic Acid Receptor-alpha mediates human T-cell activation and Th2 cytokine and chemokine production.
|
|
GO:0032754
positive regulation of interleukin-5 production
|
IDA
PMID:18416830 The Retinoic Acid Receptor-alpha mediates human T-cell activ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:18416830
The Retinoic Acid Receptor-alpha mediates human T-cell activation and Th2 cytokine and chemokine production.
|
|
GO:0045630
positive regulation of T-helper 2 cell differentiation
|
IDA
PMID:18416830 The Retinoic Acid Receptor-alpha mediates human T-cell activ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:18416830
The Retinoic Acid Receptor-alpha mediates human T-cell activation and Th2 cytokine and chemokine production.
|
|
GO:0032526
response to retinoic acid
|
IMP
PMID:17538076 Regulation of 17-beta hydroxysteroid dehydrogenase type 2 in... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:17538076
2007 May 30. Regulation of 17-beta hydroxysteroid dehydrogenase type 2 in human placental endothelial cells.
|
|
GO:0048384
retinoic acid receptor signaling pathway
|
IMP
PMID:17538076 Regulation of 17-beta hydroxysteroid dehydrogenase type 2 in... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:17538076
2007 May 30. Regulation of 17-beta hydroxysteroid dehydrogenase type 2 in human placental endothelial cells.
|
id: P10276
gene_symbol: RARA
product_type: PROTEIN
status: INITIALIZED
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: 'TODO: Add description for RARA'
existing_annotations:
- term:
id: GO:0000122
label: negative regulation of transcription by RNA polymerase II
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0004879
label: nuclear receptor activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005634
label: nucleus
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0030154
label: cell differentiation
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0045944
label: positive regulation of transcription by RNA polymerase II
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0090575
label: RNA polymerase II transcription regulator complex
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0000978
label: RNA polymerase II cis-regulatory region sequence-specific DNA
binding
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0048384
label: retinoic acid receptor signaling pathway
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0003677
label: DNA binding
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0003700
label: DNA-binding transcription factor activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0004879
label: nuclear receptor activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005634
label: nucleus
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0006355
label: regulation of DNA-templated transcription
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0008270
label: zinc ion binding
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0043565
label: sequence-specific DNA binding
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0046872
label: metal ion binding
evidence_type: IEA
original_reference_id: GO_REF:0000043
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0048384
label: retinoic acid receptor signaling pathway
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:1990837
label: sequence-specific double-stranded DNA binding
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:10698945
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:10698945
supporting_text: Structure of the RXR-RAR DNA-binding complex on the
retinoic acid response element DR1.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16189514
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:16189514
supporting_text: Towards a proteome-scale map of the human
protein-protein interaction network.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16456540
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:16456540
supporting_text: P38MAPK-dependent phosphorylation and degradation of
SRC-3/AIB1 and RARalpha-mediated transcription.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16606617
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:16606617
supporting_text: 2006 Apr 10. Additional sex comb-like 1 (ASXL1), in
cooperation with SRC-1, acts as a ligand-dependent coactivator for
retinoic acid receptor.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16769902
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:16769902
supporting_text: Phosphorylation by PKA potentiates retinoic acid
receptor alpha activity by means of increasing interaction with and
phosphorylation by cyclin H/cdk7.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:17560333
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:17560333
supporting_text: Role of the polycomb repressive complex 2 in acute
promyelocytic leukemia.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:17641689
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:17641689
supporting_text: Jul 19. MED25 is distinct from TRAP220/MED1 in
cooperating with CBP for retinoid receptor activation.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:18048326
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:18048326
supporting_text: Identification of retinoic acid as an inhibitor of
transcription factor Nrf2 through activation of retinoic acid
receptor alpha.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:19345331
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:19345331
supporting_text: ZNF423 is critically required for retinoic
acid-induced differentiation and is a marker of neuroblastoma
outcome.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:19934264
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:19934264
supporting_text: 'Nov 24. Reciprocal roles of SIRT1 and SKIP in the regulation
of RAR activity: implication in the retinoic acid-induced neuronal differentiation
of P19 cells.'
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:20133701
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20133701
supporting_text: LIM protein Ajuba functions as a nuclear receptor
corepressor and negatively regulates retinoic acid signaling.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:20211142
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20211142
supporting_text: An atlas of combinatorial transcriptional regulation
in mouse and man.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:20543827
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20543827
supporting_text: Jun 13. A unique secondary-structure switch controls
constitutive gene repression by retinoic acid receptor.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:21478865
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:21478865
supporting_text: Apr 10. Common architecture of nuclear receptor
heterodimers on DNA direct repeat elements with different spacings.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:21516116
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:21516116
supporting_text: Next-generation sequencing to generate interactome
datasets.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:21988832
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:21988832
supporting_text: Toward an understanding of the protein interaction
network of the human liver.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:22056876
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:22056876
supporting_text: A retinoic acid receptor RARΞ± pool present in
membrane lipid rafts forms complexes with G protein Ξ±Q to activate
p38MAPK.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:22351778
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:22351778
supporting_text: 2012 Feb 17. Familial focal segmental
glomerulosclerosis (FSGS)-linked Ξ±-actinin 4 (ACTN4) protein mutants
lose ability to activate transcription by nuclear hormone receptors.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:23518351
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:23518351
supporting_text: The histone demethylase PHF8 governs retinoic acid
response in acute promyelocytic leukemia.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:23693014
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:23693014
supporting_text: Activation of Akt pathway by
transcription-independent mechanisms of retinoic acid promotes
survival and invasion in lung cancer cells.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:24819975
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:24819975
supporting_text: Small ubiquitin-related modifier-1 modification
regulates all-trans-retinoic acid-induced differentiation via
stabilization of retinoic acid receptor Ξ±.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:25036637
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:25036637
supporting_text: A quantitative chaperone interaction network reveals
the architecture of cellular protein homeostasis pathways.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:25241761
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:25241761
supporting_text: Oct 9. Using an in situ proximity ligation assay to
systematically profile endogenous protein-protein interactions in a
pathway network.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:25303530
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:25303530
supporting_text: Enhancer activation requires trans-recruitment of a
mega transcription factor complex.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:25416956
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:25416956
supporting_text: A proteome-scale map of the human interactome
network.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:26871637
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:26871637
supporting_text: Widespread Expansion of Protein Interaction
Capabilities by Alternative Splicing.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:29892012
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:29892012
supporting_text: Jun 11. An interactome perturbation framework
prioritizes damaging missense mutations for developmental disorders.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:31515488
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:31515488
supporting_text: Extensive disruption of protein interactions by
genetic variants across the allele frequency spectrum in human
populations.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:32296183
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:32296183
supporting_text: Apr 8. A reference map of the human binary protein
interactome.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:35512704
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:35512704
supporting_text: 2022 May 4. Systematic discovery of mutation-directed
neo-protein-protein interactions in cancer.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:9653119
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:9653119
supporting_text: The TRAP220 component of a thyroid hormone receptor-
associated protein (TRAP) coactivator complex interacts directly
with nuclear receptors in a ligand-dependent fashion.
- term:
id: GO:0000900
label: mRNA regulatory element binding translation repressor activity
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0000976
label: transcription cis-regulatory region binding
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0000977
label: RNA polymerase II transcription regulatory region sequence-specific
DNA binding
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0001223
label: transcription coactivator binding
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0001889
label: liver development
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0007281
label: germ cell development
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0007565
label: female pregnancy
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0008285
label: negative regulation of cell population proliferation
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0008584
label: male gonad development
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0010628
label: positive regulation of gene expression
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0017148
label: negative regulation of translation
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0021766
label: hippocampus development
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0030425
label: dendrite
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0030850
label: prostate gland development
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0031641
label: regulation of myelination
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0032355
label: response to estradiol
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0033189
label: response to vitamin A
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0034097
label: response to cytokine
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0042826
label: histone deacetylase binding
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0042981
label: regulation of apoptotic process
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0045471
label: response to ethanol
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0045666
label: positive regulation of neuron differentiation
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0048027
label: mRNA 5'-UTR binding
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0048167
label: regulation of synaptic plasticity
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0048471
label: perinuclear region of cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0060010
label: Sertoli cell fate commitment
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0071222
label: cellular response to lipopolysaccharide
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:1901363
label: heterocyclic compound binding
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: IDA
original_reference_id: GO_REF:0000052
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005730
label: nucleolus
evidence_type: IDA
original_reference_id: GO_REF:0000052
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005829
label: cytosol
evidence_type: IDA
original_reference_id: GO_REF:0000052
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0042789
label: mRNA transcription by RNA polymerase II
evidence_type: IDA
original_reference_id: PMID:1310351
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:1310351
supporting_text: Retinoid X receptor interacts with nuclear receptors
in retinoic acid, thyroid hormone and vitamin D3 signalling.
- term:
id: GO:0042789
label: mRNA transcription by RNA polymerase II
evidence_type: NAS
original_reference_id: PMID:9430642
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:9430642
supporting_text: The coactivator TIF2 contains three nuclear
receptor-binding motifs and mediates transactivation through CBP
binding-dependent and -independent pathways.
- term:
id: GO:0045944
label: positive regulation of transcription by RNA polymerase II
evidence_type: IDA
original_reference_id: PMID:9430642
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:9430642
supporting_text: The coactivator TIF2 contains three nuclear
receptor-binding motifs and mediates transactivation through CBP
binding-dependent and -independent pathways.
- term:
id: GO:0000785
label: chromatin
evidence_type: IDA
original_reference_id: PMID:2825025
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:2825025
supporting_text: A human retinoic acid receptor which belongs to the
family of nuclear receptors.
- term:
id: GO:0004879
label: nuclear receptor activity
evidence_type: IDA
original_reference_id: PMID:2825025
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:2825025
supporting_text: A human retinoic acid receptor which belongs to the
family of nuclear receptors.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: IDA
original_reference_id: PMID:2825025
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:2825025
supporting_text: A human retinoic acid receptor which belongs to the
family of nuclear receptors.
- term:
id: GO:0048384
label: retinoic acid receptor signaling pathway
evidence_type: IDA
original_reference_id: PMID:2825025
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:2825025
supporting_text: A human retinoic acid receptor which belongs to the
family of nuclear receptors.
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-4341072
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0000978
label: RNA polymerase II cis-regulatory region sequence-specific DNA
binding
evidence_type: IDA
original_reference_id: PMID:21131358
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:21131358
supporting_text: '2010 Dec 3. Induction of miR-21 by retinoic acid in estrogen
receptor-positive breast carcinoma cells: biological correlates and molecular
targets.'
- term:
id: GO:0000978
label: RNA polymerase II cis-regulatory region sequence-specific DNA
binding
evidence_type: IMP
original_reference_id: PMID:28122350
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:28122350
supporting_text: Transcriptional suppression of microRNA-27a
contributes to laryngeal cancer differentiation via GSK-3Ξ²-involved
Wnt/Ξ²-catenin pathway.
- term:
id: GO:0001217
label: DNA-binding transcription repressor activity
evidence_type: IMP
original_reference_id: PMID:28122350
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:28122350
supporting_text: Transcriptional suppression of microRNA-27a
contributes to laryngeal cancer differentiation via GSK-3Ξ²-involved
Wnt/Ξ²-catenin pathway.
- term:
id: GO:0071300
label: cellular response to retinoic acid
evidence_type: IMP
original_reference_id: PMID:28122350
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:28122350
supporting_text: Transcriptional suppression of microRNA-27a
contributes to laryngeal cancer differentiation via GSK-3Ξ²-involved
Wnt/Ξ²-catenin pathway.
- term:
id: GO:1902894
label: negative regulation of miRNA transcription
evidence_type: IMP
original_reference_id: PMID:28122350
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:28122350
supporting_text: Transcriptional suppression of microRNA-27a
contributes to laryngeal cancer differentiation via GSK-3Ξ²-involved
Wnt/Ξ²-catenin pathway.
- term:
id: GO:0001223
label: transcription coactivator binding
evidence_type: IPI
original_reference_id: PMID:17641689
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:17641689
supporting_text: Jul 19. MED25 is distinct from TRAP220/MED1 in
cooperating with CBP for retinoid receptor activation.
- term:
id: GO:0045944
label: positive regulation of transcription by RNA polymerase II
evidence_type: IDA
original_reference_id: PMID:21131358
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:21131358
supporting_text: '2010 Dec 3. Induction of miR-21 by retinoic acid in estrogen
receptor-positive breast carcinoma cells: biological correlates and molecular
targets.'
- term:
id: GO:1990837
label: sequence-specific double-stranded DNA binding
evidence_type: IDA
original_reference_id: PMID:28473536
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:28473536
supporting_text: Impact of cytosine methylation on DNA binding
specificities of human transcription factors.
- term:
id: GO:0000977
label: RNA polymerase II transcription regulatory region sequence-specific
DNA binding
evidence_type: IDA
original_reference_id: PMID:19917671
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:19917671
supporting_text: Loss of CAK phosphorylation of RAR{alpha} mediates
transcriptional control of retinoid-induced cancer cell
differentiation.
- term:
id: GO:0000978
label: RNA polymerase II cis-regulatory region sequence-specific DNA
binding
evidence_type: IDA
original_reference_id: PMID:20080953
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20080953
supporting_text: Cooperative interaction between retinoic acid
receptor-alpha and estrogen receptor in breast cancer.
- term:
id: GO:0003682
label: chromatin binding
evidence_type: IDA
original_reference_id: PMID:20080953
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20080953
supporting_text: Cooperative interaction between retinoic acid
receptor-alpha and estrogen receptor in breast cancer.
- term:
id: GO:0032991
label: protein-containing complex
evidence_type: IDA
original_reference_id: PMID:19917671
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:19917671
supporting_text: Loss of CAK phosphorylation of RAR{alpha} mediates
transcriptional control of retinoid-induced cancer cell
differentiation.
- term:
id: GO:0032991
label: protein-containing complex
evidence_type: IDA
original_reference_id: PMID:20080953
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20080953
supporting_text: Cooperative interaction between retinoic acid
receptor-alpha and estrogen receptor in breast cancer.
- term:
id: GO:0048384
label: retinoic acid receptor signaling pathway
evidence_type: IDA
original_reference_id: PMID:19917671
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:19917671
supporting_text: Loss of CAK phosphorylation of RAR{alpha} mediates
transcriptional control of retinoid-induced cancer cell
differentiation.
- term:
id: GO:0045944
label: positive regulation of transcription by RNA polymerase II
evidence_type: IDA
original_reference_id: PMID:19917671
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:19917671
supporting_text: Loss of CAK phosphorylation of RAR{alpha} mediates
transcriptional control of retinoid-induced cancer cell
differentiation.
- term:
id: GO:0000785
label: chromatin
evidence_type: IDA
original_reference_id: PMID:21131358
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:21131358
supporting_text: '2010 Dec 3. Induction of miR-21 by retinoic acid in estrogen
receptor-positive breast carcinoma cells: biological correlates and molecular
targets.'
- term:
id: GO:0004879
label: nuclear receptor activity
evidence_type: IDA
original_reference_id: PMID:21131358
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:21131358
supporting_text: '2010 Dec 3. Induction of miR-21 by retinoic acid in estrogen
receptor-positive breast carcinoma cells: biological correlates and molecular
targets.'
- term:
id: GO:0000785
label: chromatin
evidence_type: ISA
original_reference_id: GO_REF:0000113
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0000981
label: DNA-binding transcription factor activity, RNA polymerase
II-specific
evidence_type: ISA
original_reference_id: GO_REF:0000113
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0051393
label: alpha-actinin binding
evidence_type: IPI
original_reference_id: PMID:22351778
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:22351778
supporting_text: 2012 Feb 17. Familial focal segmental
glomerulosclerosis (FSGS)-linked Ξ±-actinin 4 (ACTN4) protein mutants
lose ability to activate transcription by nuclear hormone receptors.
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5334854
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5634103
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9009817
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-376419
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-382096
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9617067
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9860125
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0043422
label: protein kinase B binding
evidence_type: IPI
original_reference_id: PMID:16417524
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:16417524
supporting_text: Akt phosphorylates and suppresses the transactivation
of retinoic acid receptor alpha.
- term:
id: GO:0051018
label: protein kinase A binding
evidence_type: IDA
original_reference_id: PMID:20215566
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20215566
supporting_text: Mar 9. Activity of retinoic acid receptor-alpha is
directly regulated at its protein kinase A sites in response to
follicle-stimulating hormone signaling.
- term:
id: GO:0000785
label: chromatin
evidence_type: IDA
original_reference_id: PMID:17363140
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:17363140
supporting_text: The core component of the mammalian SWI/SNF complex
SMARCD3/BAF60c is a coactivator for the nuclear retinoic acid
receptor.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:17363140
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:17363140
supporting_text: The core component of the mammalian SWI/SNF complex
SMARCD3/BAF60c is a coactivator for the nuclear retinoic acid
receptor.
- term:
id: GO:0019899
label: enzyme binding
evidence_type: IPI
original_reference_id: PMID:12039952
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:12039952
supporting_text: 2002 May 30. Identification of protein arginine
methyltransferase 2 as a coactivator for estrogen receptor alpha.
- term:
id: GO:0044323
label: retinoic acid-responsive element binding
evidence_type: IDA
original_reference_id: PMID:19917671
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:19917671
supporting_text: Loss of CAK phosphorylation of RAR{alpha} mediates
transcriptional control of retinoid-induced cancer cell
differentiation.
- term:
id: GO:0019899
label: enzyme binding
evidence_type: IPI
original_reference_id: PMID:9628876
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:9628876
supporting_text: Two distinct nuclear receptor interaction domains in
NSD1, a novel SET protein that exhibits characteristics of both
corepressors and coactivators.
- term:
id: GO:0003700
label: DNA-binding transcription factor activity
evidence_type: IDA
original_reference_id: PMID:18922886
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:18922886
supporting_text: Retinoic acid-dependent activation of the polycystic
kidney disease-1 (PKD1) promoter.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:19917671
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:19917671
supporting_text: Loss of CAK phosphorylation of RAR{alpha} mediates
transcriptional control of retinoid-induced cancer cell
differentiation.
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:18845237
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:18845237
supporting_text: Oct 25. Retinoic acid regulates the human methionine
sulfoxide reductase A (MSRA) gene via two distinct promoters.
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:19917671
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:19917671
supporting_text: Loss of CAK phosphorylation of RAR{alpha} mediates
transcriptional control of retinoid-induced cancer cell
differentiation.
- term:
id: GO:0030853
label: negative regulation of granulocyte differentiation
evidence_type: IDA
original_reference_id: PMID:19917671
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:19917671
supporting_text: Loss of CAK phosphorylation of RAR{alpha} mediates
transcriptional control of retinoid-induced cancer cell
differentiation.
- term:
id: GO:0031490
label: chromatin DNA binding
evidence_type: IDA
original_reference_id: PMID:19917671
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:19917671
supporting_text: Loss of CAK phosphorylation of RAR{alpha} mediates
transcriptional control of retinoid-induced cancer cell
differentiation.
- term:
id: GO:0045893
label: positive regulation of DNA-templated transcription
evidence_type: IDA
original_reference_id: PMID:18845237
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:18845237
supporting_text: Oct 25. Retinoic acid regulates the human methionine
sulfoxide reductase A (MSRA) gene via two distinct promoters.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:19850744
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:19850744
supporting_text: Oct 22. Small ubiquitin-like modifier-2 modification
of retinoic acid receptor-alpha regulates its subcellular
localization and transcriptional activity.
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:19850744
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:19850744
supporting_text: Oct 22. Small ubiquitin-like modifier-2 modification
of retinoic acid receptor-alpha regulates its subcellular
localization and transcriptional activity.
- term:
id: GO:0006468
label: protein phosphorylation
evidence_type: IMP
original_reference_id: PMID:16456540
review:
summary: >-
MISANNOTATION: RARA is a nuclear hormone receptor (retinoic acid receptor)
that functions as a ligand-activated transcription factor. PMID:16456540
describes "P38MAPK-dependent phosphorylation and degradation of SRC-3/AIB1"
- p38MAPK is the kinase that phosphorylates SRC-3 coactivator, NOT RARA.
RARA provides the context for this phosphorylation but does not perform it.
UniProt confirms RARA "is phosphorylated by AKT1" and "Phosphorylated by PKA"
- RARA is a SUBSTRATE of kinases, not a kinase itself. RARA has no kinase
activity (belongs to NR1 nuclear hormone receptor subfamily).
action: REMOVE
supported_by:
- reference_id: PMID:16456540
supporting_text: P38MAPK-dependent phosphorylation and degradation of
SRC-3/AIB1 and RARalpha-mediated transcription.
- term:
id: GO:0043277
label: apoptotic cell clearance
evidence_type: IMP
original_reference_id: PMID:19628791
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:19628791
supporting_text: 2009 Jul 23. Induction of transglutaminase 2 by a
liver X receptor/retinoic acid receptor alpha pathway increases the
clearance of apoptotic cells by human macrophages.
- term:
id: GO:0045893
label: positive regulation of DNA-templated transcription
evidence_type: IDA
original_reference_id: PMID:19850744
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:19850744
supporting_text: Oct 22. Small ubiquitin-like modifier-2 modification
of retinoic acid receptor-alpha regulates its subcellular
localization and transcriptional activity.
- term:
id: GO:0045944
label: positive regulation of transcription by RNA polymerase II
evidence_type: IDA
original_reference_id: PMID:19850744
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:19850744
supporting_text: Oct 22. Small ubiquitin-like modifier-2 modification
of retinoic acid receptor-alpha regulates its subcellular
localization and transcriptional activity.
- term:
id: GO:0045893
label: positive regulation of DNA-templated transcription
evidence_type: IMP
original_reference_id: PMID:19628791
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:19628791
supporting_text: 2009 Jul 23. Induction of transglutaminase 2 by a
liver X receptor/retinoic acid receptor alpha pathway increases the
clearance of apoptotic cells by human macrophages.
- term:
id: GO:0005102
label: signaling receptor binding
evidence_type: IDA
original_reference_id: PMID:19628791
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:19628791
supporting_text: 2009 Jul 23. Induction of transglutaminase 2 by a
liver X receptor/retinoic acid receptor alpha pathway increases the
clearance of apoptotic cells by human macrophages.
- term:
id: GO:0019904
label: protein domain specific binding
evidence_type: IPI
original_reference_id: PMID:20413580
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20413580
supporting_text: 2010 Apr 22. Human ADA3 regulates RARalpha
transcriptional activity through direct contact between LxxLL motifs
and the receptor coactivator pocket.
- term:
id: GO:0003700
label: DNA-binding transcription factor activity
evidence_type: IDA
original_reference_id: PMID:20413580
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20413580
supporting_text: 2010 Apr 22. Human ADA3 regulates RARalpha
transcriptional activity through direct contact between LxxLL motifs
and the receptor coactivator pocket.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:20080953
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20080953
supporting_text: Cooperative interaction between retinoic acid
receptor-alpha and estrogen receptor in breast cancer.
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:20080953
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20080953
supporting_text: Cooperative interaction between retinoic acid
receptor-alpha and estrogen receptor in breast cancer.
- term:
id: GO:0008284
label: positive regulation of cell population proliferation
evidence_type: IMP
original_reference_id: PMID:20080953
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20080953
supporting_text: Cooperative interaction between retinoic acid
receptor-alpha and estrogen receptor in breast cancer.
- term:
id: GO:0045787
label: positive regulation of cell cycle
evidence_type: IMP
original_reference_id: PMID:20080953
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20080953
supporting_text: Cooperative interaction between retinoic acid
receptor-alpha and estrogen receptor in breast cancer.
- term:
id: GO:0045892
label: negative regulation of DNA-templated transcription
evidence_type: IDA
original_reference_id: PMID:20080953
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20080953
supporting_text: Cooperative interaction between retinoic acid
receptor-alpha and estrogen receptor in breast cancer.
- term:
id: GO:0045893
label: positive regulation of DNA-templated transcription
evidence_type: IDA
original_reference_id: PMID:20080953
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20080953
supporting_text: Cooperative interaction between retinoic acid
receptor-alpha and estrogen receptor in breast cancer.
- term:
id: GO:0045944
label: positive regulation of transcription by RNA polymerase II
evidence_type: IMP
original_reference_id: PMID:20080953
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20080953
supporting_text: Cooperative interaction between retinoic acid
receptor-alpha and estrogen receptor in breast cancer.
- term:
id: GO:0051099
label: positive regulation of binding
evidence_type: IMP
original_reference_id: PMID:20080953
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20080953
supporting_text: Cooperative interaction between retinoic acid
receptor-alpha and estrogen receptor in breast cancer.
- term:
id: GO:0071391
label: cellular response to estrogen stimulus
evidence_type: IDA
original_reference_id: PMID:20080953
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20080953
supporting_text: Cooperative interaction between retinoic acid
receptor-alpha and estrogen receptor in breast cancer.
- term:
id: GO:0001972
label: retinoic acid binding
evidence_type: IDA
original_reference_id: PMID:2825025
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:2825025
supporting_text: A human retinoic acid receptor which belongs to the
family of nuclear receptors.
- term:
id: GO:0032689
label: negative regulation of type II interferon production
evidence_type: IDA
original_reference_id: PMID:18416830
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:18416830
supporting_text: The Retinoic Acid Receptor-alpha mediates human
T-cell activation and Th2 cytokine and chemokine production.
- term:
id: GO:0032720
label: negative regulation of tumor necrosis factor production
evidence_type: IDA
original_reference_id: PMID:18416830
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:18416830
supporting_text: The Retinoic Acid Receptor-alpha mediates human
T-cell activation and Th2 cytokine and chemokine production.
- term:
id: GO:0032736
label: positive regulation of interleukin-13 production
evidence_type: IDA
original_reference_id: PMID:18416830
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:18416830
supporting_text: The Retinoic Acid Receptor-alpha mediates human
T-cell activation and Th2 cytokine and chemokine production.
- term:
id: GO:0032753
label: positive regulation of interleukin-4 production
evidence_type: IDA
original_reference_id: PMID:18416830
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:18416830
supporting_text: The Retinoic Acid Receptor-alpha mediates human
T-cell activation and Th2 cytokine and chemokine production.
- term:
id: GO:0032754
label: positive regulation of interleukin-5 production
evidence_type: IDA
original_reference_id: PMID:18416830
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:18416830
supporting_text: The Retinoic Acid Receptor-alpha mediates human
T-cell activation and Th2 cytokine and chemokine production.
- term:
id: GO:0045630
label: positive regulation of T-helper 2 cell differentiation
evidence_type: IDA
original_reference_id: PMID:18416830
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:18416830
supporting_text: The Retinoic Acid Receptor-alpha mediates human
T-cell activation and Th2 cytokine and chemokine production.
- term:
id: GO:0032526
label: response to retinoic acid
evidence_type: IMP
original_reference_id: PMID:17538076
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:17538076
supporting_text: 2007 May 30. Regulation of 17-beta hydroxysteroid
dehydrogenase type 2 in human placental endothelial cells.
- term:
id: GO:0048384
label: retinoic acid receptor signaling pathway
evidence_type: IMP
original_reference_id: PMID:17538076
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:17538076
supporting_text: 2007 May 30. Regulation of 17-beta hydroxysteroid
dehydrogenase type 2 in human placental endothelial cells.
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with
GO terms
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000043
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword
mapping
findings: []
- id: GO_REF:0000052
title: Gene Ontology annotation based on curation of immunofluorescence data
findings: []
- id: GO_REF:0000107
title: Automatic transfer of experimentally verified manual GO annotation
data to orthologs using Ensembl Compara
findings: []
- id: GO_REF:0000113
title: Gene Ontology annotation of human sequence-specific DNA binding
transcription factors (DbTFs) based on the TFClass database
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning
models
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:10698945
title: Structure of the RXR-RAR DNA-binding complex on the retinoic acid
response element DR1.
findings: []
- id: PMID:12039952
title: Identification of protein arginine methyltransferase 2 as a
coactivator for estrogen receptor alpha.
findings: []
- id: PMID:1310351
title: Retinoid X receptor interacts with nuclear receptors in retinoic
acid, thyroid hormone and vitamin D3 signalling.
findings: []
- id: PMID:16189514
title: Towards a proteome-scale map of the human protein-protein interaction
network.
findings: []
- id: PMID:16417524
title: Akt phosphorylates and suppresses the transactivation of retinoic
acid receptor alpha.
findings: []
- id: PMID:16456540
title: P38MAPK-dependent phosphorylation and degradation of SRC-3/AIB1 and
RARalpha-mediated transcription.
findings: []
- id: PMID:16606617
title: Additional sex comb-like 1 (ASXL1), in cooperation with SRC-1, acts
as a ligand-dependent coactivator for retinoic acid receptor.
findings: []
- id: PMID:16769902
title: Phosphorylation by PKA potentiates retinoic acid receptor alpha
activity by means of increasing interaction with and phosphorylation by
cyclin H/cdk7.
findings: []
- id: PMID:17363140
title: The core component of the mammalian SWI/SNF complex SMARCD3/BAF60c is
a coactivator for the nuclear retinoic acid receptor.
findings: []
- id: PMID:17538076
title: Regulation of 17-beta hydroxysteroid dehydrogenase type 2 in human
placental endothelial cells.
findings: []
- id: PMID:17560333
title: Role of the polycomb repressive complex 2 in acute promyelocytic
leukemia.
findings: []
- id: PMID:17641689
title: MED25 is distinct from TRAP220/MED1 in cooperating with CBP for
retinoid receptor activation.
findings: []
- id: PMID:18048326
title: Identification of retinoic acid as an inhibitor of transcription
factor Nrf2 through activation of retinoic acid receptor alpha.
findings: []
- id: PMID:18416830
title: The Retinoic Acid Receptor-alpha mediates human T-cell activation and
Th2 cytokine and chemokine production.
findings: []
- id: PMID:18845237
title: Retinoic acid regulates the human methionine sulfoxide reductase A
(MSRA) gene via two distinct promoters.
findings: []
- id: PMID:18922886
title: Retinoic acid-dependent activation of the polycystic kidney disease-1
(PKD1) promoter.
findings: []
- id: PMID:19345331
title: ZNF423 is critically required for retinoic acid-induced
differentiation and is a marker of neuroblastoma outcome.
findings: []
- id: PMID:19628791
title: Induction of transglutaminase 2 by a liver X receptor/retinoic acid
receptor alpha pathway increases the clearance of apoptotic cells by human
macrophages.
findings: []
- id: PMID:19850744
title: >-
Small ubiquitin-like modifier-2 modification of retinoic acid receptor-alpha
regulates its subcellular localization and transcriptional activity.
findings: []
- id: PMID:19917671
title: Loss of CAK phosphorylation of RAR{alpha} mediates transcriptional
control of retinoid-induced cancer cell differentiation.
findings: []
- id: PMID:19934264
title: 'Reciprocal roles of SIRT1 and SKIP in the regulation of RAR activity:
implication in the retinoic acid-induced neuronal differentiation of P19 cells.'
findings: []
- id: PMID:20080953
title: Cooperative interaction between retinoic acid receptor-alpha and
estrogen receptor in breast cancer.
findings: []
- id: PMID:20133701
title: LIM protein Ajuba functions as a nuclear receptor corepressor and
negatively regulates retinoic acid signaling.
findings: []
- id: PMID:20211142
title: An atlas of combinatorial transcriptional regulation in mouse and
man.
findings: []
- id: PMID:20215566
title: Activity of retinoic acid receptor-alpha is directly regulated at its
protein kinase A sites in response to follicle-stimulating hormone
signaling.
findings: []
- id: PMID:20413580
title: Human ADA3 regulates RARalpha transcriptional activity through direct
contact between LxxLL motifs and the receptor coactivator pocket.
findings: []
- id: PMID:20543827
title: A unique secondary-structure switch controls constitutive gene
repression by retinoic acid receptor.
findings: []
- id: PMID:21131358
title: 'Induction of miR-21 by retinoic acid in estrogen receptor-positive breast
carcinoma cells: biological correlates and molecular targets.'
findings: []
- id: PMID:21478865
title: Common architecture of nuclear receptor heterodimers on DNA direct
repeat elements with different spacings.
findings: []
- id: PMID:21516116
title: Next-generation sequencing to generate interactome datasets.
findings: []
- id: PMID:21988832
title: Toward an understanding of the protein interaction network of the
human liver.
findings: []
- id: PMID:22056876
title: A retinoic acid receptor RARΞ± pool present in membrane lipid rafts
forms complexes with G protein Ξ±Q to activate p38MAPK.
findings: []
- id: PMID:22351778
title: Familial focal segmental glomerulosclerosis (FSGS)-linked Ξ±-actinin 4
(ACTN4) protein mutants lose ability to activate transcription by nuclear
hormone receptors.
findings: []
- id: PMID:23518351
title: The histone demethylase PHF8 governs retinoic acid response in acute
promyelocytic leukemia.
findings: []
- id: PMID:23693014
title: Activation of Akt pathway by transcription-independent mechanisms of
retinoic acid promotes survival and invasion in lung cancer cells.
findings: []
- id: PMID:24819975
title: Small ubiquitin-related modifier-1 modification regulates
all-trans-retinoic acid-induced differentiation via stabilization of
retinoic acid receptor Ξ±.
findings: []
- id: PMID:25036637
title: A quantitative chaperone interaction network reveals the architecture
of cellular protein homeostasis pathways.
findings: []
- id: PMID:25241761
title: Using an in situ proximity ligation assay to systematically profile
endogenous protein-protein interactions in a pathway network.
findings: []
- id: PMID:25303530
title: Enhancer activation requires trans-recruitment of a mega
transcription factor complex.
findings: []
- id: PMID:25416956
title: A proteome-scale map of the human interactome network.
findings: []
- id: PMID:26871637
title: Widespread Expansion of Protein Interaction Capabilities by
Alternative Splicing.
findings: []
- id: PMID:28122350
title: Transcriptional suppression of microRNA-27a contributes to laryngeal
cancer differentiation via GSK-3Ξ²-involved Wnt/Ξ²-catenin pathway.
findings: []
- id: PMID:2825025
title: A human retinoic acid receptor which belongs to the family of nuclear
receptors.
findings: []
- id: PMID:28473536
title: Impact of cytosine methylation on DNA binding specificities of human
transcription factors.
findings: []
- id: PMID:29892012
title: An interactome perturbation framework prioritizes damaging missense
mutations for developmental disorders.
findings: []
- id: PMID:31515488
title: Extensive disruption of protein interactions by genetic variants
across the allele frequency spectrum in human populations.
findings: []
- id: PMID:32296183
title: A reference map of the human binary protein interactome.
findings: []
- id: PMID:35512704
title: Systematic discovery of mutation-directed neo-protein-protein
interactions in cancer.
findings: []
- id: PMID:9430642
title: The coactivator TIF2 contains three nuclear receptor-binding motifs
and mediates transactivation through CBP binding-dependent and
-independent pathways.
findings: []
- id: PMID:9628876
title: Two distinct nuclear receptor interaction domains in NSD1, a novel
SET protein that exhibits characteristics of both corepressors and
coactivators.
findings: []
- id: PMID:9653119
title: The TRAP220 component of a thyroid hormone receptor- associated
protein (TRAP) coactivator complex interacts directly with nuclear
receptors in a ligand-dependent fashion.
findings: []
- id: Reactome:R-HSA-376419
title: Formation of NR-MED1 Coactivator Complex
findings: []
- id: Reactome:R-HSA-382096
title: Formation of NR-NCOR Corepressor Complex
findings: []
- id: Reactome:R-HSA-4341072
title: SUMOylation of RARA with SUMO2
findings: []
- id: Reactome:R-HSA-5334854
title: RAR:RXR binds SUMO-CRABP2:atRA
findings: []
- id: Reactome:R-HSA-5634103
title: SUMO-CRABP2 dissociates from atRA:RAR:RXR
findings: []
- id: Reactome:R-HSA-9009817
title: Acitretin binds to RAR:RXR
findings: []
- id: Reactome:R-HSA-9617067
title: All-trans retinoic acid binds RARA:RXRA at the promoter of the CEBPE
gene
findings: []
- id: Reactome:R-HSA-9860125
title: Binding of ATRA to TGFBR3 gene promoter
findings: []