RIMBP2

UniProt ID: O15034
Organism: Homo sapiens
Review Status: COMPLETE
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Gene Description

RIMS-binding protein 2 (RIM-BP2) is a presynaptic active-zone scaffold with three SH3 and three fibronectin type III domains. It organizes calcium-channel positioning relative to synaptic vesicle release sites and promotes vesicle priming through the RIM/Munc13 machinery. Studies of mammalian RIM-BP2 show synapse-dependent contributions: calcium-secretion coupling at hippocampal CA3-CA1 synapses, stabilization of Munc13-1 and vesicle docking/priming at mossy-fiber synapses, and channel organization at auditory ribbon synapses.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0007274 neuromuscular synaptic transmission
IBA
GO_REF:0000033
UNDECIDED
Summary: The historical neuromuscular-transmission IBA is biologically plausible through conserved RIM-BP presynaptic function, but its specific vertebrate context remains unresolved. The current human QuickGO record instead carries broader presynaptic annotations.
Reason: GO:0007274 describes transmission from neuron to muscle; it does not require exclusive function at neuromuscular junctions. Mammalian central/ribbon-synapse function therefore does not refute this IBA. The OpenScientist investigation documents fly neuromuscular evidence, mammalian coupling mechanisms, and no identified experiment refuting a mammalian neuromuscular role. Its conclusion that missing mammalian experiments alone precludes phylogenetic transfer is not sufficient: inheritance depends on the ancestral assertion and evidence of conservation or divergence. The historical PTN002306629 node is absent from the refreshed PTHR14234 PAINT slice, and a direct QuickGO query confirms that human O15034 no longer carries GO:0007274. This establishes a snapshot difference, not proof of biological loss. Retain UNDECIDED for the historical assertion pending resolution of its context-specific phylogenetic placement. Skeletal-muscle expression is not a useful exclusion test for a presynaptic protein made in motor neurons.
Propagation Review
Root cause: UNRESOLVED
Sources checked:
PANTHER:PTN002306629 SOURCE STALE OR MISSING
Historical PAINT node from the reviewed GOA row, absent from the refreshed PTHR14234 PAINT slice. Current O15034 QuickGO annotations omit GO:0007274; neither observation establishes loss of neuromuscular function.
Supporting Evidence:
PMID:27671655
Still, the importance of RIM-BPs for STP is conserved between flies and mammals
PMID:31535974
at hippocampal mossy fiber synapses, RIM-BP2 has a substantial impact on neurotransmitter release by promoting vesicle docking/priming and vesicular release probability via stabilization of Munc13-1 at the active zone.
file:human/RIMBP2/RIMBP2-hypotheses/function-hypothesis-go-0007274/openscientist.md
a vertebrate NMJ role remains formally untested rather than disproven
GO:0005886 plasma membrane
IEA
GO_REF:0000044
ACCEPT
Summary: RIMBP2 associates with the synaptic plasma membrane as part of the presynaptic active-zone scaffold.
Reason: The broad cellular-component annotation is supported by the curated UniProt subcellular location and mammalian active-zone localization. It does not imply uniform localization across the entire plasma membrane. The more specific active-zone annotation can coexist with this correct parent-level location.
Supporting Evidence:
UniProt:O15034
Note=Synaptic plasma membrane
PMID:27671655
Together, these results indicate that RIM-BP2 is part of the presynaptic AZ scaffold and forms a complex with the priming factors RIM and Munc13-1.
GO:0045202 synapse
IEA
GO_REF:0000044
ACCEPT
Summary: RIMBP2 localizes to presynaptic active zones at synapses.
Reason: Synaptic localization is supported by mammalian imaging and the conserved active-zone scaffold function. The broad synapse term remains correct alongside a more specific presynaptic annotation.
Supporting Evidence:
PMID:27671655
On the confocal level, RIM-BP2 colocalized with both AZ proteins
PMID:27671655
Together, these results indicate that RIM-BP2 is part of the presynaptic AZ scaffold and forms a complex with the priming factors RIM and Munc13-1.
GO:0048786 presynaptic active zone
ISS
DOI:10.1073/pnas.1605256113
NEW
Summary: Mammalian RIM-BP2 is part of the presynaptic active-zone scaffold.
Reason: Super-resolution microscopy and complex analysis in mouse hippocampal synapses establish active-zone localization. Transfer to the conserved human RIMBP2 ortholog is appropriate; the evidence is on the mouse protein rather than a direct human localization experiment.
Supporting Evidence:
PMID:27671655
On the confocal level, RIM-BP2 colocalized with both AZ proteins
PMID:27671655
Together, these results indicate that RIM-BP2 is part of the presynaptic AZ scaffold and forms a complex with the priming factors RIM and Munc13-1.
GO:0098882 structural constituent of presynaptic active zone
ISS
DOI:10.1016/j.celrep.2020.107960
NEW
Summary: RIMBP2 contributes structural scaffolding to the presynaptic active zone.
Reason: RIMBP2 forms an active-zone complex with RIM and Munc13-1 and organizes calcium channels relative to vesicle release sites. The spatial and functional evidence supports structural-constituent activity by orthology from mammalian RIM-BP2, beyond a generic interaction annotation.
Supporting Evidence:
PMID:27671655
Together, these results indicate that RIM-BP2 is part of the presynaptic AZ scaffold and forms a complex with the priming factors RIM and Munc13-1.
GO:0010808 positive regulation of synaptic vesicle priming
ISS
DOI:10.7554/eLife.43243
NEW
Summary: RIMBP2 promotes synaptic vesicle priming through stabilization of Munc13-1 at mossy-fiber active zones.
Reason: The mouse study links RIMBP2 to Munc13-1 positioning and stabilization and to vesicle docking/priming. This is a mechanistic scaffold contribution to priming, not merely a downstream transmission phenotype. Transfer to human RIMBP2 is an ortholog inference, and the magnitude of this role depends on synapse type.
Supporting Evidence:
PMID:31535974
at hippocampal mossy fiber synapses, RIM-BP2 has a substantial impact on neurotransmitter release by promoting vesicle docking/priming and vesicular release probability via stabilization of Munc13-1 at the active zone.

Core Functions

RIMBP2 is a core structural scaffold of the presynaptic active zone, containing three SH3 domains and three FN3 domains that mediate multivalent interactions with RIM proteins, Munc13-1, Bassoon, and voltage-gated calcium channels. This scaffolding function organizes the molecular machinery required for synaptic vesicle release.

Supporting Evidence:
  • PMID:27671655
    Together, these results indicate that RIM-BP2 is part of the presynaptic AZ scaffold and forms a complex with the priming factors RIM and Munc13-1.
  • PMID:31535974
    at hippocampal mossy fiber synapses, RIM-BP2 has a substantial impact on neurotransmitter release by promoting vesicle docking/priming and vesicular release probability via stabilization of Munc13-1 at the active zone.

References

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Suggested Questions for Experts

Q: How does RIMBP2 differ from neuronal RIMBP1/TSPOAP1 across synapse types?

Q: Are there specific human disease variants in RIMBP2 that affect synaptic function?

Q: How does RIMBP2 phosphorylation regulate its scaffolding function?

Q: Does the conserved presynaptic mechanism support human RIMBP2 participation in neuromuscular synaptic transmission, and how was that context placed on the historical PAINT ancestral node PTN002306629?

Suggested Experiments

Experiment: Super-resolution imaging of RIMBP2 distribution in human iPSC-derived neurons

Experiment: Structure-function analysis of RIMBP2 SH3 domain mutations on calcium channel binding

Experiment: Characterization of RIMBP2 patient variants identified in neurodevelopmental disorders

Deep Research

Falcon

(RIMBP2-deep-research-falcon.md)

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OpenAI

(RIMBP2-deep-research-openai.md)

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OpenScientist

(RIMBP2-hypotheses/function-hypothesis-go-0007274/openscientist.md)

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πŸ“š Additional Documentation

Notes

(RIMBP2-notes.md)

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