TODO: Add description for RUNX3
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0000978
RNA polymerase II cis-regulatory region sequence-specific DNA binding
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0001503
ossification
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0030097
hemopoiesis
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0030182
neuron differentiation
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0045595
regulation of cell differentiation
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0006357
regulation of transcription by RNA polymerase II
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0000981
DNA-binding transcription factor activity, RNA polymerase II-specific
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0002062
chondrocyte differentiation
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0003677
DNA binding
|
IEA
GO_REF:0000120 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0003700
DNA-binding transcription factor activity
|
IEA
GO_REF:0000002 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005524
ATP binding
|
IEA
GO_REF:0000002 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005634
nucleus
|
IEA
GO_REF:0000120 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005737
cytoplasm
|
IEA
GO_REF:0000044 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0006355
regulation of DNA-templated transcription
|
IEA
GO_REF:0000002 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0045893
positive regulation of DNA-templated transcription
|
IEA
GO_REF:0000117 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:1990837
sequence-specific double-stranded DNA binding
|
IEA
GO_REF:0000117 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005515
protein binding
|
IPI
PMID:18772112 RUNX3 attenuates beta-catenin/T cell factors in intestinal t... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:18772112
RUNX3 attenuates beta-catenin/T cell factors in intestinal tumorigenesis.
|
|
GO:0005515
protein binding
|
IPI
PMID:24229708 Runx3 inactivation is a crucial early event in the developme... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:24229708
Runx3 inactivation is a crucial early event in the development of lung adenocarcinoma.
|
|
GO:0005515
protein binding
|
IPI
PMID:33961781 Dual proteome-scale networks reveal cell-specific remodeling... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:33961781
2021 May 6. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
|
|
GO:0005515
protein binding
|
IPI
PMID:38424632 Ubiquitylation of RUNX3 by RNA-binding ubiquitin ligase MEX3... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:38424632
Ubiquitylation of RUNX3 by RNA-binding ubiquitin ligase MEX3C promotes tumorigenesis in lung adenocarcinoma.
|
|
GO:0005515
protein binding
|
IPI
PMID:9751710 Transcriptional repression by AML1 and LEF-1 is mediated by ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:9751710
Transcriptional repression by AML1 and LEF-1 is mediated by the TLE/Groucho corepressors.
|
|
GO:0005654
nucleoplasm
|
IDA
GO_REF:0000052 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005829
cytosol
|
IDA
GO_REF:0000052 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0006357
regulation of transcription by RNA polymerase II
|
IDA
PMID:20591170 The Runx transcriptional co-activator, CBFbeta, is essential... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20591170
The Runx transcriptional co-activator, CBFbeta, is essential for invasion of breast cancer cells.
|
|
GO:0001222
transcription corepressor binding
|
IPI
PMID:9751710 Transcriptional repression by AML1 and LEF-1 is mediated by ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:9751710
Transcriptional repression by AML1 and LEF-1 is mediated by the TLE/Groucho corepressors.
|
|
GO:1990837
sequence-specific double-stranded DNA binding
|
IDA
PMID:28473536 Impact of cytosine methylation on DNA binding specificities ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:28473536
Impact of cytosine methylation on DNA binding specificities of human transcription factors.
|
|
GO:0000785
chromatin
|
ISA
GO_REF:0000113 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0000981
DNA-binding transcription factor activity, RNA polymerase II-specific
|
ISA
GO_REF:0000113 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0016513
core-binding factor complex
|
TAS
PMID:18258917 Repression of the transcription factor Th-POK by Runx comple... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:18258917
Repression of the transcription factor Th-POK by Runx complexes in cytotoxic T cell development.
|
|
GO:0043371
negative regulation of CD4-positive, alpha-beta T cell differentiation
|
ISS
GO_REF:0000024 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0043378
positive regulation of CD8-positive, alpha-beta T cell differentiation
|
ISS
GO_REF:0000024 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-8952419 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-8952399 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-8952408 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-8952382 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-8952399 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-8951966 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-8951977 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-8952058 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-8952062 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-8952069 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-8937792 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-8937807 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-8937814 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-8865454 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-8878117 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-8878143 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-8878178 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-8878193 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-8878220 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-8878237 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-8937814 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-8949335 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-8951428 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-8951676 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-8951910 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-8951951 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-8952128 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-8952226 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005654
nucleoplasm
|
TAS
Reactome:R-HSA-8952371 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005515
protein binding
|
IPI
PMID:20599712 Tumor suppressor, AT motif binding factor 1 (ATBF1), translo... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20599712
Tumor suppressor, AT motif binding factor 1 (ATBF1), translocates to the nucleus with runt domain transcription factor 3 (RUNX3) in response to TGF-beta signal transduction.
|
|
GO:0005634
nucleus
|
IDA
PMID:20599712 Tumor suppressor, AT motif binding factor 1 (ATBF1), translo... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20599712
Tumor suppressor, AT motif binding factor 1 (ATBF1), translocates to the nucleus with runt domain transcription factor 3 (RUNX3) in response to TGF-beta signal transduction.
|
|
GO:0005737
cytoplasm
|
IDA
PMID:20599712 Tumor suppressor, AT motif binding factor 1 (ATBF1), translo... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20599712
Tumor suppressor, AT motif binding factor 1 (ATBF1), translocates to the nucleus with runt domain transcription factor 3 (RUNX3) in response to TGF-beta signal transduction.
|
|
GO:0045893
positive regulation of DNA-templated transcription
|
IDA
PMID:20599712 Tumor suppressor, AT motif binding factor 1 (ATBF1), translo... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20599712
Tumor suppressor, AT motif binding factor 1 (ATBF1), translocates to the nucleus with runt domain transcription factor 3 (RUNX3) in response to TGF-beta signal transduction.
|
|
GO:0071559
response to transforming growth factor beta
|
IDA
PMID:20599712 Tumor suppressor, AT motif binding factor 1 (ATBF1), translo... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20599712
Tumor suppressor, AT motif binding factor 1 (ATBF1), translocates to the nucleus with runt domain transcription factor 3 (RUNX3) in response to TGF-beta signal transduction.
|
|
GO:0005515
protein binding
|
IPI
PMID:17377532 Foxp3 controls regulatory T-cell function by interacting wit... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:17377532
Foxp3 controls regulatory T-cell function by interacting with AML1/Runx1.
|
|
GO:0000785
chromatin
|
ISS
GO_REF:0000024 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0000977
RNA polymerase II transcription regulatory region sequence-specific DNA binding
|
ISS
GO_REF:0000024 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0000122
negative regulation of transcription by RNA polymerase II
|
ISS
GO_REF:0000024 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0000981
DNA-binding transcription factor activity, RNA polymerase II-specific
|
ISS
GO_REF:0000024 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0048935
peripheral nervous system neuron development
|
TAS
PMID:20096094 Brn3a regulates neuronal subtype specification in the trigem... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20096094
Brn3a regulates neuronal subtype specification in the trigeminal ganglion by promoting Runx expression during sensory differentiation.
|
|
GO:0005634
nucleus
|
IDA
PMID:20100835 Src kinase phosphorylates RUNX3 at tyrosine residues and loc... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20100835
Epub 2010 Jan 25. Src kinase phosphorylates RUNX3 at tyrosine residues and localizes the protein in the cytoplasm.
|
|
GO:0006468
protein phosphorylation
|
IDA
PMID:20100835 Src kinase phosphorylates RUNX3 at tyrosine residues and loc... |
REMOVE |
Summary: MISANNOTATION: RUNX3 is a Runt-domain transcription factor that is extensively PHOSPHORYLATED by kinases. PMID:20100835 title is "Src kinase phosphorylates RUNX3 at tyrosine residues" - RUNX3 is the SUBSTRATE of Src kinase, not an enzyme. The paper states "overexpression of Src results in the tyrosine phosphorylation... of RUNX3" and shows Src phosphorylates RUNX3 in vitro. RUNX3 has DNA-binding and transcription factor activity, not kinase activity. Phosphorylation of RUNX3 by Src leads to its cytoplasmic mislocalization.
Supporting Evidence:
PMID:20100835
Epub 2010 Jan 25. Src kinase phosphorylates RUNX3 at tyrosine residues and localizes the protein in the cytoplasm.
|
|
GO:0005515
protein binding
|
IPI
PMID:20100835 Src kinase phosphorylates RUNX3 at tyrosine residues and loc... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20100835
Epub 2010 Jan 25. Src kinase phosphorylates RUNX3 at tyrosine residues and localizes the protein in the cytoplasm.
|
|
GO:0005737
cytoplasm
|
IDA
PMID:20100835 Src kinase phosphorylates RUNX3 at tyrosine residues and loc... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:20100835
Epub 2010 Jan 25. Src kinase phosphorylates RUNX3 at tyrosine residues and localizes the protein in the cytoplasm.
|
|
GO:0045786
negative regulation of cell cycle
|
ISS
GO_REF:0000024 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0050680
negative regulation of epithelial cell proliferation
|
ISS
GO_REF:0000024 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0003700
DNA-binding transcription factor activity
|
TAS
PMID:7607690 Identification of a new murine runt domain-containing gene, ... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:7607690
Identification of a new murine runt domain-containing gene, Cbfa3, and localization of the human homolog, CBFA3, to chromosome 1p35-pter.
|
|
GO:0005524
ATP binding
|
NAS
PMID:7835892 AML1, AML2, and AML3, the human members of the runt domain g... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:7835892
AML1, AML2, and AML3, the human members of the runt domain gene-family: cDNA structure, expression, and chromosomal localization.
|
|
GO:0006355
regulation of DNA-templated transcription
|
NAS
PMID:7622058 Cloning, mapping and expression of PEBP2 alpha C, a third ge... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:7622058
Cloning, mapping and expression of PEBP2 alpha C, a third gene encoding the mammalian Runt domain.
|
id: Q13761
gene_symbol: RUNX3
product_type: PROTEIN
status: INITIALIZED
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: 'TODO: Add description for RUNX3'
existing_annotations:
- term:
id: GO:0000978
label: RNA polymerase II cis-regulatory region sequence-specific DNA
binding
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0001503
label: ossification
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0030097
label: hemopoiesis
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0030182
label: neuron differentiation
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0045595
label: regulation of cell differentiation
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0006357
label: regulation of transcription by RNA polymerase II
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0000981
label: DNA-binding transcription factor activity, RNA polymerase
II-specific
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0002062
label: chondrocyte differentiation
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0003677
label: DNA binding
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0003700
label: DNA-binding transcription factor activity
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005524
label: ATP binding
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005634
label: nucleus
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0006355
label: regulation of DNA-templated transcription
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0045893
label: positive regulation of DNA-templated transcription
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:1990837
label: sequence-specific double-stranded DNA binding
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:18772112
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:18772112
supporting_text: RUNX3 attenuates beta-catenin/T cell factors in
intestinal tumorigenesis.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:24229708
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:24229708
supporting_text: Runx3 inactivation is a crucial early event in the
development of lung adenocarcinoma.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:33961781
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:33961781
supporting_text: 2021 May 6. Dual proteome-scale networks reveal
cell-specific remodeling of the human interactome.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:38424632
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:38424632
supporting_text: Ubiquitylation of RUNX3 by RNA-binding ubiquitin
ligase MEX3C promotes tumorigenesis in lung adenocarcinoma.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:9751710
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:9751710
supporting_text: Transcriptional repression by AML1 and LEF-1 is
mediated by the TLE/Groucho corepressors.
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: IDA
original_reference_id: GO_REF:0000052
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005829
label: cytosol
evidence_type: IDA
original_reference_id: GO_REF:0000052
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0006357
label: regulation of transcription by RNA polymerase II
evidence_type: IDA
original_reference_id: PMID:20591170
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20591170
supporting_text: The Runx transcriptional co-activator, CBFbeta, is
essential for invasion of breast cancer cells.
- term:
id: GO:0001222
label: transcription corepressor binding
evidence_type: IPI
original_reference_id: PMID:9751710
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:9751710
supporting_text: Transcriptional repression by AML1 and LEF-1 is
mediated by the TLE/Groucho corepressors.
- term:
id: GO:1990837
label: sequence-specific double-stranded DNA binding
evidence_type: IDA
original_reference_id: PMID:28473536
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:28473536
supporting_text: Impact of cytosine methylation on DNA binding
specificities of human transcription factors.
- term:
id: GO:0000785
label: chromatin
evidence_type: ISA
original_reference_id: GO_REF:0000113
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0000981
label: DNA-binding transcription factor activity, RNA polymerase
II-specific
evidence_type: ISA
original_reference_id: GO_REF:0000113
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0016513
label: core-binding factor complex
evidence_type: TAS
original_reference_id: PMID:18258917
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:18258917
supporting_text: Repression of the transcription factor Th-POK by Runx
complexes in cytotoxic T cell development.
- term:
id: GO:0043371
label: negative regulation of CD4-positive, alpha-beta T cell
differentiation
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0043378
label: positive regulation of CD8-positive, alpha-beta T cell
differentiation
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8952419
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8952399
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8952408
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8952382
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8952399
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8951966
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8951977
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8952058
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8952062
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8952069
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8937792
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8937807
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8937814
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8865454
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8878117
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8878143
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8878178
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8878193
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8878220
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8878237
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8937814
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8949335
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8951428
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8951676
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8951910
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8951951
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8952128
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8952226
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8952371
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:20599712
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20599712
supporting_text: Tumor suppressor, AT motif binding factor 1 (ATBF1),
translocates to the nucleus with runt domain transcription factor 3
(RUNX3) in response to TGF-beta signal transduction.
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:20599712
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20599712
supporting_text: Tumor suppressor, AT motif binding factor 1 (ATBF1),
translocates to the nucleus with runt domain transcription factor 3
(RUNX3) in response to TGF-beta signal transduction.
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:20599712
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20599712
supporting_text: Tumor suppressor, AT motif binding factor 1 (ATBF1),
translocates to the nucleus with runt domain transcription factor 3
(RUNX3) in response to TGF-beta signal transduction.
- term:
id: GO:0045893
label: positive regulation of DNA-templated transcription
evidence_type: IDA
original_reference_id: PMID:20599712
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20599712
supporting_text: Tumor suppressor, AT motif binding factor 1 (ATBF1),
translocates to the nucleus with runt domain transcription factor 3
(RUNX3) in response to TGF-beta signal transduction.
- term:
id: GO:0071559
label: response to transforming growth factor beta
evidence_type: IDA
original_reference_id: PMID:20599712
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20599712
supporting_text: Tumor suppressor, AT motif binding factor 1 (ATBF1),
translocates to the nucleus with runt domain transcription factor 3
(RUNX3) in response to TGF-beta signal transduction.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:17377532
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:17377532
supporting_text: Foxp3 controls regulatory T-cell function by
interacting with AML1/Runx1.
- term:
id: GO:0000785
label: chromatin
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0000977
label: RNA polymerase II transcription regulatory region sequence-specific
DNA binding
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0000122
label: negative regulation of transcription by RNA polymerase II
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0000981
label: DNA-binding transcription factor activity, RNA polymerase
II-specific
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0048935
label: peripheral nervous system neuron development
evidence_type: TAS
original_reference_id: PMID:20096094
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20096094
supporting_text: Brn3a regulates neuronal subtype specification in the
trigeminal ganglion by promoting Runx expression during sensory
differentiation.
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:20100835
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20100835
supporting_text: Epub 2010 Jan 25. Src kinase phosphorylates RUNX3 at
tyrosine residues and localizes the protein in the cytoplasm.
- term:
id: GO:0006468
label: protein phosphorylation
evidence_type: IDA
original_reference_id: PMID:20100835
review:
summary: >-
MISANNOTATION: RUNX3 is a Runt-domain transcription factor that is extensively
PHOSPHORYLATED by kinases. PMID:20100835 title is "Src kinase phosphorylates
RUNX3 at tyrosine residues" - RUNX3 is the SUBSTRATE of Src kinase, not an
enzyme. The paper states "overexpression of Src results in the tyrosine
phosphorylation... of RUNX3" and shows Src phosphorylates RUNX3 in vitro.
RUNX3 has DNA-binding and transcription factor activity, not kinase activity.
Phosphorylation of RUNX3 by Src leads to its cytoplasmic mislocalization.
action: REMOVE
supported_by:
- reference_id: PMID:20100835
supporting_text: Epub 2010 Jan 25. Src kinase phosphorylates RUNX3 at
tyrosine residues and localizes the protein in the cytoplasm.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:20100835
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20100835
supporting_text: Epub 2010 Jan 25. Src kinase phosphorylates RUNX3 at
tyrosine residues and localizes the protein in the cytoplasm.
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:20100835
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:20100835
supporting_text: Epub 2010 Jan 25. Src kinase phosphorylates RUNX3 at
tyrosine residues and localizes the protein in the cytoplasm.
- term:
id: GO:0045786
label: negative regulation of cell cycle
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0050680
label: negative regulation of epithelial cell proliferation
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0003700
label: DNA-binding transcription factor activity
evidence_type: TAS
original_reference_id: PMID:7607690
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:7607690
supporting_text: Identification of a new murine runt domain-containing
gene, Cbfa3, and localization of the human homolog, CBFA3, to
chromosome 1p35-pter.
- term:
id: GO:0005524
label: ATP binding
evidence_type: NAS
original_reference_id: PMID:7835892
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:7835892
supporting_text: 'AML1, AML2, and AML3, the human members of the runt domain
gene-family: cDNA structure, expression, and chromosomal localization.'
- term:
id: GO:0006355
label: regulation of DNA-templated transcription
evidence_type: NAS
original_reference_id: PMID:7622058
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:7622058
supporting_text: Cloning, mapping and expression of PEBP2 alpha C, a
third gene encoding the mammalian Runt domain.
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with
GO terms
findings: []
- id: GO_REF:0000024
title: Manual transfer of experimentally-verified manual GO annotation data
to orthologs by curator judgment of sequence similarity
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular
Location vocabulary mapping, accompanied by conservative changes to GO
terms applied by UniProt
findings: []
- id: GO_REF:0000052
title: Gene Ontology annotation based on curation of immunofluorescence data
findings: []
- id: GO_REF:0000113
title: Gene Ontology annotation of human sequence-specific DNA binding
transcription factors (DbTFs) based on the TFClass database
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning
models
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:17377532
title: Foxp3 controls regulatory T-cell function by interacting with
AML1/Runx1.
findings: []
- id: PMID:18258917
title: Repression of the transcription factor Th-POK by Runx complexes in
cytotoxic T cell development.
findings: []
- id: PMID:18772112
title: RUNX3 attenuates beta-catenin/T cell factors in intestinal
tumorigenesis.
findings: []
- id: PMID:20096094
title: Brn3a regulates neuronal subtype specification in the trigeminal
ganglion by promoting Runx expression during sensory differentiation.
findings: []
- id: PMID:20100835
title: Src kinase phosphorylates RUNX3 at tyrosine residues and localizes
the protein in the cytoplasm.
findings: []
- id: PMID:20591170
title: The Runx transcriptional co-activator, CBFbeta, is essential for
invasion of breast cancer cells.
findings: []
- id: PMID:20599712
title: Tumor suppressor, AT motif binding factor 1 (ATBF1), translocates to
the nucleus with runt domain transcription factor 3 (RUNX3) in response to
TGF-beta signal transduction.
findings: []
- id: PMID:24229708
title: Runx3 inactivation is a crucial early event in the development of
lung adenocarcinoma.
findings: []
- id: PMID:28473536
title: Impact of cytosine methylation on DNA binding specificities of human
transcription factors.
findings: []
- id: PMID:33961781
title: Dual proteome-scale networks reveal cell-specific remodeling of the
human interactome.
findings: []
- id: PMID:38424632
title: Ubiquitylation of RUNX3 by RNA-binding ubiquitin ligase MEX3C
promotes tumorigenesis in lung adenocarcinoma.
findings: []
- id: PMID:7607690
title: Identification of a new murine runt domain-containing gene, Cbfa3,
and localization of the human homolog, CBFA3, to chromosome 1p35-pter.
findings: []
- id: PMID:7622058
title: Cloning, mapping and expression of PEBP2 alpha C, a third gene
encoding the mammalian Runt domain.
findings: []
- id: PMID:7835892
title: 'AML1, AML2, and AML3, the human members of the runt domain gene-family:
cDNA structure, expression, and chromosomal localization.'
findings: []
- id: PMID:9751710
title: Transcriptional repression by AML1 and LEF-1 is mediated by the
TLE/Groucho corepressors.
findings: []
- id: Reactome:R-HSA-8865454
title: CBFB binds RUNX3
findings: []
- id: Reactome:R-HSA-8878117
title: RUNX3 binds ZFHX3
findings: []
- id: Reactome:R-HSA-8878143
title: RUNX3 binds SMAD3 and SMAD4
findings: []
- id: Reactome:R-HSA-8878178
title: The complex of RUNX3, SMAD3 and SMAD4 binds the CDKN1A gene promoter
findings: []
- id: Reactome:R-HSA-8878193
title: RUNX3 binds the JAG1 gene promoter
findings: []
- id: Reactome:R-HSA-8878220
title: RUNX3 binds the NOTCH1 coactivator complex
findings: []
- id: Reactome:R-HSA-8878237
title: RUNX3:NOTCH1 coactivator complex binds the HES1 gene promoter
findings: []
- id: Reactome:R-HSA-8937792
title: RUNX3 binds SRC
findings: []
- id: Reactome:R-HSA-8937807
title: SRC phosphorylates RUNX3
findings: []
- id: Reactome:R-HSA-8937814
title: RUNX3 translocates to the nucleus
findings: []
- id: Reactome:R-HSA-8949335
title: RUNX3:CBFB binds the ITGAL gene,(ITGA4 gene) promoter
findings: []
- id: Reactome:R-HSA-8951428
title: RUNX3 binds CTNNB1:TCF7L2,(LEF1,TCF7L1,TCF7)
findings: []
- id: Reactome:R-HSA-8951676
title: RUNX3 binds TEADs and YAP1
findings: []
- id: Reactome:R-HSA-8951910
title: RUNX3 binds the RUNX1 promoter
findings: []
- id: Reactome:R-HSA-8951951
title: RUNX3 binds EP300
findings: []
- id: Reactome:R-HSA-8951966
title: EP300 acetylates RUNX3
findings: []
- id: Reactome:R-HSA-8951977
title: Acetylated RUNX3 binds to BRD2
findings: []
- id: Reactome:R-HSA-8952058
title: CCND1 binds RUNX3 and displaces EP300
findings: []
- id: Reactome:R-HSA-8952062
title: CCND1 recruits HDAC4 to RUNX3
findings: []
- id: Reactome:R-HSA-8952069
title: HDAC4 deacetylates RUNX3
findings: []
- id: Reactome:R-HSA-8952128
title: RUNX3 binds TP53
findings: []
- id: Reactome:R-HSA-8952226
title: RUNX3 binds the BCL2L11 (BIM) gene
findings: []
- id: Reactome:R-HSA-8952371
title: MDM2 binds RUNX3
findings: []
- id: Reactome:R-HSA-8952382
title: MDM2 polyubiquitinates RUNX3
findings: []
- id: Reactome:R-HSA-8952399
title: Polyubiquitinated RUNX3 translocates to the cytosol
findings: []
- id: Reactome:R-HSA-8952408
title: Polyubiquitinated RUNX3 is degraded by the proteasome
findings: []
- id: Reactome:R-HSA-8952419
title: SMURFs ubiquitinate RUNX3
findings: []