SCGB1C2

UniProt ID: P0DMR2
Organism: Homo sapiens
Review Status: COMPLETE
Aliases:
Secretoglobin family 1C member 2 SCGB1C1-like
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Gene Description

Secretoglobin family 1C member 2, a small secreted protein (~10 kDa, 95 AA) that forms homodimers with a four-helix bundle structure creating a hydrophobic pocket for binding small lipophilic ligands. Member of the secretoglobin (uteroglobin) superfamily of secretory proteins involved in immunomodulation, anti-inflammatory responses, and ligand transport. Expression is tissue-enhanced in pancreas, retina (MΓΌller glia and photoreceptors), and testis (spermatocytes/spermatids), suggesting specialized roles in these organs. Like other secretoglobins, SCGB1C2 likely binds and sequesters hydrophobic molecules (steroids, retinoids, lipid mediators) to regulate their local availability and modulate inflammation or signaling. The protein is secreted into extracellular fluids where it functions as a ligand carrier/buffer. Specific binding partners and detailed biochemical function remain to be determined experimentally. IMPORTANT CAVEAT (falcon deep research): SCGB1C2 is a poorly-characterized secretoglobin with essentially no SCGB1C2-specific functional literature. No substrate/ligand specificity, catalytic activity, receptor binding, or pathway placement has been directly reported for SCGB1C2 itself; the lipid-binding and ligand-carrier roles are family-level structural inferences, not direct experimental findings. SCGB1C2 also has extreme sequence similarity to its paralog SCGB1C1 such that all of its tryptic peptides overlap with SCGB1C1 variants, making it a neXtProt "missing protein" that cannot be uniquely validated by standard mass spectrometry and increasing the risk that proteomics or interactome hits are mis-assigned between the two near-identical genes. Functional and localization claims here should be treated as provisional.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0005576 extracellular region
IEA
GO_REF:0000044
ACCEPT
Summary: SCGB1C2 contains signal peptide and is secreted. Confirmed at protein level. Functions in extracellular fluids of pancreas, retina, and testis.
Reason: Well-supported secreted protein, central to secretoglobin function.
Supporting Evidence:
UniProt:P0DMR2
SUBCELLULAR LOCATION: Secreted {ECO:0000250|UniProtKB:P11684}.
file:human/SCGB1C2/SCGB1C2-deep-research-perplexity.md
Bioinformatic prediction algorithms consistently predict SCGB1C2 to be located in the **extracellular region**
file:human/SCGB1C2/SCGB1C2-deep-research-falcon.md
Secretoglobins** are a family of small, secreted proteins (classically including uteroglobin/SCGB1A1 family members) often discussed as extracellular, dimeric proteins implicated in mucosal biology and ligand binding in related family members
GO:0005515 protein binding
IPI
PMID:32296183
A reference map of the human binary protein interactome.
UNDECIDED
Summary: High-throughput interactome study. Generic protein binding (GO:0005515), which is uninformative about actual molecular function. The falcon deep research independently found no SCGB1C2-specific functional binding, receptor-binding, or biochemical evidence in the primary literature, so this annotation cannot be upgraded to a more informative MF term.
Reason: The cached PMID:32296183 text is a broad interactome map and does not provide gene-specific evidence for SCGB1C2 protein binding; direct support for this annotation cannot be verified from the publication text. The falcon deep research likewise found no SCGB1C2-specific binding or receptor evidence. Note also the strong SCGB1C1/SCGB1C2 peptide-level ambiguity, which means high-throughput hits may be mis-assigned between the two near-identical paralogs.
Supporting Evidence:
UniProt:P0DMR2
-!- INTERACTION: P0DMR2; Q12797-6: ASPH; NbExp=3; IntAct=EBI-12947705, EBI-12092171; -!- SUBCELLULAR LOCATION: Secreted {ECO:0000250|UniProtKB:P11684}
PMID:32296183
A reference map of the human binary protein interactome.
file:human/SCGB1C2/SCGB1C2-deep-research-falcon.md
SCGB1C2-specific functional biochemistry (substrate/ligand specificity, catalytic activity, receptor binding) was **not directly reported**
GO:0008289 lipid binding
IEA NEW
Summary: Secretoglobins bind hydrophobic ligands via a conserved hydrophobic pocket. This is a family-level structural inference only. The falcon deep research found NO SCGB1C2-specific evidence for ligand binding: no substrate/ligand specificity, catalytic activity, or receptor binding has been directly reported for SCGB1C2 itself. The lipid-binding inference rests entirely on secretoglobin/uteroglobin family structural homology, not on direct experimental data for this protein. Treat as a low-confidence, provisional family-based prediction.
Reason: Secretoglobin family structure supports binding of lipophilic ligands, but direct transport activity and a SCGB1C2-specific ligand are not supported by any primary evidence retrieved; this annotation is a structural-family inference and should be regarded as provisional.
Supporting Evidence:
file:human/SCGB1C2/SCGB1C2-deep-research-perplexity.md
This cavity accommodates small to medium-sized lipophilic ligands, including steroid hormones, phospholipids, polychlorinated biphenyls, and various eicosanoid mediators of inflammation, providing a structural basis for their regulatory functions.
file:human/SCGB1C2/SCGB1C2-deep-research-falcon.md
SCGB1C2-specific functional biochemistry (substrate/ligand specificity, catalytic activity, receptor binding) was **not directly reported**; therefore, no enzyme reaction, transporter substrate, or specific pathway position can be asserted from primary evidence in this session.

Core Functions

Binding and sequestering small hydrophobic ligands (lipids, steroids, retinoids) in extracellular fluids to modulate local signaling and inflammation

Molecular Function:
lipid binding
Cellular Locations:
Supporting Evidence:
  • file:human/SCGB1C2/SCGB1C2-uniprot.txt
    Secretoglobin family member with characteristic four-helix bundle and hydrophobic ligand-binding pocket
  • file:human/SCGB1C2/SCGB1C2-deep-research-openai.md
    Secretoglobins share characteristic four-Ξ±-helix bundle creating hydrophobic cavity that binds small lipophilic ligands. Primary molecular function is binding and transport of small hydrophobic compounds.

References

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Suggested Questions for Experts

Q: What are the specific hydrophobic ligands bound by SCGB1C2 in pancreas, retina, and testis?

Suggested experts: Biochemists, Secretoglobin researchers

Q: What is the immunomodulatory role of SCGB1C2 in these tissues?

Suggested experts: Immunologists, Inflammation researchers

Suggested Experiments

Experiment: Ligand binding assays with purified SCGB1C2 to identify substrate specificity

Hypothesis: SCGB1C2 binds steroids, retinoids, or lipid mediators

Type: biochemical assay

Experiment: Knockout mice to assess role in retinal function, testicular physiology, and pancreatic secretion

Hypothesis: SCGB1C2 is required for normal function in these organs

Type: genetic manipulation

Deep Research

Falcon

(SCGB1C2-deep-research-falcon.md)

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OpenAI

(SCGB1C2-deep-research-openai.md)

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Perplexity

(SCGB1C2-deep-research-perplexity-lite.md)

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Perplexity

(SCGB1C2-deep-research-perplexity.md)

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