SCN9A

UniProt ID: Q15858
Organism: Homo sapiens
Review Status: COMPLETE
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Gene Description

SCN9A encodes the pore-forming alpha subunit of Nav1.7, a tetrodotoxin-sensitive voltage-gated sodium channel. It is a single large polypeptide (~1977 aa) with the canonical Nav architecture of four internal homologous repeats (domains I-IV), each containing six transmembrane segments (S1-S6); the S4 segments are the voltage sensors and the S5-S6 re-entrant loops form the Na+-selective pore. The channel is functional on its own as a multi-pass plasma membrane protein and is modulated by auxiliary beta subunits (SCN1B, SCN2B, SCN3B, SCN4B). On membrane depolarization the channel opens and selectively conducts Na+ down its electrochemical gradient, mediating the rising (depolarizing) phase of the action potential. Nav1.7 is strongly expressed in peripheral sensory neurons, most notably small-diameter nociceptive dorsal root ganglion neurons, and in sympathetic ganglion neurons; in nociceptors it localizes to the soma membrane, axons, axon/nerve terminals, and nodes of Ranvier, where it acts as a threshold/amplifier channel that boosts subthreshold depolarizations and sets the gain for action potential firing. Loss-of-function mutations cause complete congenital inability to perceive pain, while gain-of-function mutations cause inherited erythromelalgia and paroxysmal extreme pain disorder, establishing Nav1.7 as an essential, non-redundant determinant of human pain sensation.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0001518 voltage-gated sodium channel complex
IBA
GO_REF:0000033
ACCEPT
Summary: Nav1.7 is the pore-forming alpha subunit of a voltage-gated sodium channel that assembles with auxiliary beta subunits (SCN1B-SCN4B) into the channel complex. Membership in the VGSC complex is directly demonstrated by cryo-EM (PMID:30765606) and is consistent across the phylogenetic family.
Reason: Well-supported by phylogenetic inference and corroborated by direct structural evidence; correct cellular component for the alpha subunit.
Supporting Evidence:
PMID:30765606
Here we report the cryo-electron microscopy structures of the human Nav1.7-Ξ²1-Ξ²2 complex
GO:0005248 voltage-gated sodium channel activity
IBA
GO_REF:0000033
ACCEPT
Summary: Voltage-gated sodium channel activity is the defining molecular function of Nav1.7, demonstrated directly by functional expression (PMID:7720699, PMID:17145499) and broadly conserved across the Nav family.
Reason: Core molecular function, supported by both IBA and multiple experimental IDA annotations.
Supporting Evidence:
PMID:7720699
The channel exhibited rapid activation and inactivation kinetics, and was blocked by tetrodotoxin and cadmium with IC50 values of 24.5 nM and 1.1 mM, respectively.
GO:0035725 sodium ion transmembrane transport
IBA
GO_REF:0000033
ACCEPT
Summary: As a Na+-selective channel, Nav1.7 mediates transmembrane movement of Na+ ions (Na(+)(in) = Na(+)(out)), the process directly underlying its channel activity.
Reason: Accurate and specific process term for a sodium channel; directly tied to the enabling molecular function and supported by the catalytic activity (Rhea:RHEA:34963).
Supporting Evidence:
PMID:7720699
A member of a new subclass of the voltage-activated sodium channel genes has been cloned from the human medullary thyroid carcinoma (hMTC) cell line.
GO:0086002 cardiac muscle cell action potential involved in contraction
IBA
GO_REF:0000033
MARK AS OVER ANNOTATED
Summary: This cardiac process term is over-propagated from the Nav family tree. Nav1.7 is not a cardiac channel; the cardiac voltage-gated sodium channel is Nav1.5 (SCN5A). The original cloning study explicitly failed to detect SCN9A transcripts in heart.
Reason: Phylogenetic over-propagation. Nav1.7 is expressed in peripheral sensory and sympathetic neurons, not in cardiomyocytes, and has no established role in cardiac muscle contraction. The IBA WITH/FROM set (P35498 Nav1.1, Q14524 Nav1.5) reflects cardiac-channel paralogs, not SCN9A.
Supporting Evidence:
PMID:7720699
Transcripts were not identified in pituitary gland, brain, heart, liver or kidney, indicating that the hNE-Na is a sodium channel solely expressed in neuroendocrine cells.
GO:0001508 action potential
IEA
GO_REF:0000117
KEEP AS NON CORE
Summary: Nav1.7 contributes to action potential generation, but this is a high-level parent of the more specific experimentally-supported terms neuronal action potential (GO:0019228) and membrane depolarization during action potential (GO:0086010) already annotated.
Reason: Correct but redundant general term; the specific neuronal terms capture the biology more informatively.
Supporting Evidence:
PMID:7720699
Action potentials were generated in cells expressing high levels of hNE-Na.
GO:0001518 voltage-gated sodium channel complex
IEA
GO_REF:0000002
ACCEPT
Summary: InterPro-based electronic annotation of VGSC complex membership; redundant with the experimental IPI (PMID:30765606) and IBA annotations to the same term.
Reason: Correct component, consistent with the experimentally and phylogenetically supported annotations to the identical term.
GO:0005216 monoatomic ion channel activity
IEA
GO_REF:0000002
KEEP AS NON CORE
Summary: High-level parent of the specific, experimentally-supported voltage-gated sodium channel activity (GO:0005248).
Reason: Correct but uninformatively general; superseded by the specific MF term.
GO:0005248 voltage-gated sodium channel activity
IEA
GO_REF:0000120
ACCEPT
Summary: Electronic assertion of the core molecular function, redundant with the experimental IDA and IBA annotations to the same term.
Reason: Correct core molecular function; consistent with experimental evidence.
GO:0005261 monoatomic cation channel activity
IEA
GO_REF:0000002
KEEP AS NON CORE
Summary: High-level parent of voltage-gated sodium channel activity (GO:0005248).
Reason: Correct but uninformatively general; superseded by the specific Na+ channel MF term.
GO:0005886 plasma membrane
IEA
GO_REF:0000120
ACCEPT
Summary: Nav1.7 is a multi-pass plasma membrane protein, directly demonstrated by multiple experimental studies.
Reason: Correct and core cellular location of the channel; supported by EXP/IMP annotations and UniProt subcellular location (Cell membrane).
Supporting Evidence:
PMID:30765606
Here we report the cryo-electron microscopy structures of the human Nav1.7-Ξ²1-Ξ²2 complex
GO:0006811 monoatomic ion transport
IEA
GO_REF:0000002
KEEP AS NON CORE
Summary: High-level parent of sodium ion transport / sodium ion transmembrane transport.
Reason: Correct but uninformatively general; superseded by the specific Na+ transport terms.
GO:0006814 sodium ion transport
IEA
GO_REF:0000002
KEEP AS NON CORE
Summary: Sodium ion transport is the process mediated by this Na+-selective channel, though the more specific GO:0035725 (sodium ion transmembrane transport, IBA) is preferable.
Reason: Correct but a less specific sibling/parent of the IBA-annotated sodium ion transmembrane transport term.
GO:0016020 membrane
IEA
GO_REF:0000002
KEEP AS NON CORE
Summary: High-level parent of plasma membrane (GO:0005886), the specific experimentally-supported location.
Reason: Correct but uninformatively general; superseded by plasma membrane.
IEA
GO_REF:0000044
KEEP AS NON CORE
Summary: Nav1.7 localizes to axons of nociceptor neurons, directly demonstrated in human iPSC-derived nociceptors (PMID:30795902) and consistent with the UniProt subcellular location (Cell projection, axon).
Reason: Accurate location in sensory neurons; non-core relative to the channel's molecular function but a meaningful site of action. Redundant with the IDA-supported axon-related localizations.
Supporting Evidence:
PMID:30795902
localized at the soma membrane, axon, axon
GO:0043005 neuron projection
IEA
GO_REF:0000044
KEEP AS NON CORE
Summary: Parent term encompassing axon/nerve terminals where Nav1.7 localizes; UniProt records Cell projection, neuron projection (PMID:30795902).
Reason: Correct but a general parent of the more specific axon, axon terminus, and node of Ranvier localizations.
Supporting Evidence:
PMID:30795902
localized at the soma membrane, axon, axon
GO:0055085 transmembrane transport
IEA
GO_REF:0000002
KEEP AS NON CORE
Summary: High-level parent of sodium ion transmembrane transport (GO:0035725).
Reason: Correct but uninformatively general; superseded by the specific Na+ transmembrane transport term.
GO:0007623 circadian rhythm
IEA
GO_REF:0000107
REMOVE
Summary: Electronic ortholog-transfer annotation from mouse Scn9a (Q62205) via Ensembl Compara. There is no established role for human Nav1.7 in circadian rhythm, and this is not part of the channel's well-characterized nociceptor biology.
Reason: Weakly supported ortholog-transfer (IEA) annotation with no experimental basis in human and no mechanistic link to the channel's core function. It does not appear in UniProt's curated function summary and risks implying an unsubstantiated role; better excluded than retained as non-core.
GO:0050965 detection of temperature stimulus involved in sensory perception of pain
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: Electronic ortholog-transfer from mouse Scn9a. Nav1.7 loss in humans produces thermal hypoesthesia and abolishes thermal/noxious pain, so a role in thermal pain signalling is biologically plausible, but Nav1.7 amplifies nociceptor excitability rather than directly transducing temperature.
Reason: Plausible peripheral role consistent with CIP thermal phenotypes, but IEA-only and not a core/direct molecular function; Nav1.7 is a downstream amplifier, not the thermal sensor. Keep as a non-core process annotation.
Supporting Evidence:
PMID:30795902
Cold and warm detection thresholds in both the hand and the foot were reduced when compared to the normative range
GO:0050974 detection of mechanical stimulus involved in sensory perception
IEA
GO_REF:0000107
KEEP AS NON CORE
Summary: Electronic ortholog-transfer from mouse Scn9a. Nav1.7 contributes to mechanical pain sensitivity by amplifying nociceptor firing, but it is not the primary mechanotransducer; in CIP patients mechanical detection thresholds were normal while mechanical pain was abolished.
Reason: Nav1.7 supports mechanical nociception but does not detect mechanical stimuli directly; the term overstates a direct sensory-transduction role. Retain as non-core rather than core.
Supporting Evidence:
PMID:30795902
Mechanical and vibration detection thresholds were normal
GO:0001518 voltage-gated sodium channel complex
IPI
PMID:30765606
Structures of human Na(v)1.7 channel in complex with auxilia...
ACCEPT
Summary: Cryo-EM structures of human Nav1.7 in complex with auxiliary subunits (SCN1B/SCN2B) directly establish that SCN9A is part of the voltage-gated sodium channel complex.
Reason: Directly experimentally demonstrated complex membership (ComplexPortal/structure-based); core cellular component.
Supporting Evidence:
PMID:30765606
Here we report the cryo-electron microscopy structures of the human Nav1.7-Ξ²1-Ξ²2 complex
GO:0086010 membrane depolarization during action potential
IDA
PMID:30765606
Structures of human Na(v)1.7 channel in complex with auxilia...
ACCEPT
Summary: Nav1.7 conducts the Na+ influx that produces membrane depolarization during the rising phase of the action potential, consistent with its established channel function.
Reason: Accurate and specific process directly mediated by the channel; well aligned with UniProt FUNCTION ("influx of Na(+) ions provokes membrane depolarization").
Supporting Evidence:
PMID:30765606
Voltage-gated sodium channel Nav1.7 represents a promising target for pain relief.
GO:0005886 plasma membrane
EXP
PMID:15385606
Electrophysiological properties of mutant Nav1.7 sodium chan...
ACCEPT
Summary: Experimental localization of Nav1.7 (including erythromelalgia mutants) to the cell membrane.
Reason: Correct, experimentally-supported core location of the channel.
Supporting Evidence:
PMID:15385606
Electrophysiological properties of mutant Nav1.7 sodium channels in a painful inherited neuropathy.
GO:0005886 plasma membrane
EXP
PMID:17167479
An SCN9A channelopathy causes congenital inability to experi...
ACCEPT
Summary: Functional expression of wild-type and mutant Nav1.7 in HEK293 cells demonstrating plasma-membrane Na+ currents (loss of function in CIP mutants).
Reason: Correct, experimentally-supported core location.
Supporting Evidence:
PMID:17167479
Whole-cell voltage clamp recordings from cells co-expressing wild-type Nav1.7 with the Ξ²1Ξ²2 subunits, revealed a voltage-gated Na+ current
GO:0005886 plasma membrane
EXP
PMID:19369487
Early- and late-onset inherited erythromelalgia: genotype-ph...
ACCEPT
Summary: Experimental characterization of inherited erythromelalgia mutants with cell-membrane localization/function.
Reason: Correct, experimentally-supported core location.
Supporting Evidence:
PMID:19369487
Early- and late-onset inherited erythromelalgia: genotype-phenotype correlation.
GO:0005886 plasma membrane
EXP
PMID:24311784
Inherited pain: sodium channel Nav1.7 A1632T mutation causes...
ACCEPT
Summary: Functional study of the A1632T erythromelalgia mutant with surface expression and altered fast inactivation.
Reason: Correct, experimentally-supported core location.
Supporting Evidence:
PMID:24311784
sodium channel Nav1.7 A1632T mutation causes erythromelalgia due to a shift of fast inactivation
GO:0005886 plasma membrane
EXP
PMID:25240195
Protein kinase C enhances human sodium channel hNav1.7 resur...
ACCEPT
Summary: Functional study showing PKC phosphorylation enhances Nav1.7 resurgent currents at the cell membrane.
Reason: Correct, experimentally-supported core location.
Supporting Evidence:
PMID:25240195
Protein kinase C enhances human sodium channel hNav1.7 resurgent currents via a serine residue in the domain III-IV linker.
GO:0005886 plasma membrane
EXP
PMID:26680203
Structural basis of Nav1.7 inhibition by an isoform-selectiv...
ACCEPT
Summary: Structural/functional study of Nav1.7 inhibition by a small-molecule antagonist, consistent with the channel residing in the cell membrane.
Reason: Correct, experimentally-supported core location.
Supporting Evidence:
PMID:26680203
Structural basis of Nav1.7 inhibition by an isoform-selective small-molecule antagonist.
GO:0005886 plasma membrane
EXP
PMID:7720699
Structure and functional expression of a new member of the t...
ACCEPT
Summary: Original functional expression of hNE-Na (Nav1.7) producing voltage-gated Na+ currents and action potentials at the cell surface.
Reason: Correct, experimentally-supported core location from the founding functional study.
Supporting Evidence:
PMID:7720699
The hNE-Na alpha subunit was transiently expressed in human embryonic kidney cells either alone or in combination with the human sodium channel beta 1 subunit.
GO:0005248 voltage-gated sodium channel activity
IDA
PMID:7720699
Structure and functional expression of a new member of the t...
ACCEPT
Summary: The founding study cloned hNE-Na (Nav1.7) and demonstrated voltage-gated, TTX-sensitive Na+ channel activity with rapid activation/inactivation kinetics upon heterologous expression.
Reason: Direct experimental demonstration of the core molecular function; primary evidence for GO:0005248.
Supporting Evidence:
PMID:7720699
The channel exhibited rapid activation and inactivation kinetics, and was blocked by tetrodotoxin and cadmium with IC50 values of 24.5 nM and 1.1 mM, respectively.
GO:0019228 neuronal action potential
IDA
PMID:30795902
Defining the Functional Role of Na(V)1.7 in Human Nociceptio...
ACCEPT
Summary: In human iPSC-derived nociceptors and CIP studies, Nav1.7 is required for normal nociceptor action potential firing, defining its role in the neuronal action potential.
Reason: Specific, experimentally-supported neuronal process directly reflecting Nav1.7's threshold/amplifier role in sensory neurons.
Supporting Evidence:
PMID:30795902
Defining the Functional Role of Na(V)1.7 in Human Nociception.
GO:0019233 sensory perception of pain
IMP
PMID:30795902
Defining the Functional Role of Na(V)1.7 in Human Nociceptio...
ACCEPT
Summary: Loss of functional Nav1.7 in CIP participants abolishes the perception of noxious thermal and mechanical stimuli as painful, demonstrating an essential role in pain sensation.
Reason: Decisive human-genetics evidence; core biological process of Nav1.7.
Supporting Evidence:
PMID:30795902
neither noxious temperature nor noxious mechanical stimuli were felt as painful
GO:0033268 node of Ranvier
IDA
PMID:30795902
Defining the Functional Role of Na(V)1.7 in Human Nociceptio...
ACCEPT
Summary: CRISPR-tagged endogenous Nav1.7 localized to the great majority of nodes of Ranvier in myelinated human iPSC-nociceptor co-cultures.
Reason: Directly demonstrated localization in human neurons; specific and informative cellular component.
Supporting Evidence:
PMID:30795902
NaV1.7 could be seen localized to >90% of nodes of Ranvier in myelinated axons
GO:0043679 axon terminus
IDA
PMID:30795902
Defining the Functional Role of Na(V)1.7 in Human Nociceptio...
ACCEPT
Summary: Endogenous tagged Nav1.7 was enriched in terminal structures of human iPSC nociceptors, consistent with prior reports of axon-terminal localization in rodent DRG neurons.
Reason: Directly demonstrated localization; specific and informative component relevant to action potential initiation/propagation at terminals.
Supporting Evidence:
PMID:30795902
staining revealed enrichment of NaV1.7 in terminal structures of our iPSC nociceptors
GO:0098870 action potential propagation
IDA
PMID:17145499
SCN9A mutations in paroxysmal extreme pain disorder: allelic...
ACCEPT
Summary: PEPD gain-of-function mutations impair Nav1.7 fast inactivation, producing persistent Na+ current and hyperexcitability that alters action potential firing/propagation in sensory neurons.
Reason: Consistent with Nav1.7's role in conducting/propagating depolarization; supported by an experimental electrophysiology study (full text read by curator).
Supporting Evidence:
PMID:17145499
Functional analysis in vitro of three of these mutant Na(v)1.7 channels revealed a reduction in fast inactivation, leading to persistent sodium current.
GO:0098870 action potential propagation
IDA
PMID:7720699
Structure and functional expression of a new member of the t...
ACCEPT
Summary: Cells expressing high levels of hNE-Na (Nav1.7) generated action potentials, consistent with the channel's role in initiating and propagating electrical signals.
Reason: Experimentally supported; the channel drives the depolarizing phase required for action potential propagation.
Supporting Evidence:
PMID:7720699
Action potentials were generated in cells expressing high levels of hNE-Na.
GO:0005515 protein binding
IPI
PMID:37117223
Pain-causing stinging nettle toxins target TMEM233 to modula...
MARK AS OVER ANNOTATED
Summary: This IPI annotation records the experimentally-demonstrated interaction between Nav1.7 and TMEM233 (B4DJY2), a transmembrane protein required for nettle-toxin modulation of Nav1.7 gating. The generic "protein binding" term is uninformative and does not capture the regulatory nature of this interaction.
Reason: Per curation guidelines, generic protein binding should be avoided in favour of an informative molecular function. The underlying biology is a channel-regulator/auxiliary-protein interaction (TMEM233 modulates Nav1.7 gating), but no sufficiently specific GO molecular-function term is clearly applicable; the specific interaction partner and regulatory role are better captured in notes/SUBUNIT than by this uninformative term.
Supporting Evidence:
PMID:37117223
Pain-causing stinging nettle toxins target TMEM233 to modulate Na(V)1.7 function.
file:human/SCN9A/SCN9A-deep-research-falcon.md
identified **TMEM233 (a dispanin-family protein)** as an essential **NaV1.7-interacting accessory protein** for the action of the plant-derived knottin toxin **Excelsatoxin A (ExTxA)**.
ISS
GO_REF:0000024
KEEP AS NON CORE
Summary: Sequence-similarity transfer (from rat Pn1/O08562) of axonal localization; consistent with experimental human IDA data placing Nav1.7 in axons.
Reason: Accurate location supported by stronger human evidence; non-core relative to molecular function and redundant with the IEA axon annotation.
Supporting Evidence:
PMID:30795902
localized at the soma membrane, axon, axon
GO:0005248 voltage-gated sodium channel activity
IDA
PMID:17145499
SCN9A mutations in paroxysmal extreme pain disorder: allelic...
ACCEPT
Summary: Functional in vitro analysis of PEPD mutant Nav1.7 channels confirmed voltage-gated sodium channel activity (with altered fast inactivation in mutants).
Reason: Direct experimental evidence for the core molecular function.
Supporting Evidence:
PMID:17145499
Functional analysis in vitro of three of these mutant Na(v)1.7 channels revealed a reduction in fast inactivation, leading to persistent sodium current.
GO:0005886 plasma membrane
IMP
PMID:17145499
SCN9A mutations in paroxysmal extreme pain disorder: allelic...
ACCEPT
Summary: Functional expression of PEPD mutant channels demonstrates plasma-membrane Na+ currents, supporting cell-membrane localization.
Reason: Correct, experimentally-supported core location.
Supporting Evidence:
PMID:17145499
Functional analysis in vitro of three of these mutant Na(v)1.7 channels revealed a reduction in fast inactivation, leading to persistent sodium current.
GO:0019233 sensory perception of pain
IMP
PMID:17145499
SCN9A mutations in paroxysmal extreme pain disorder: allelic...
ACCEPT
Summary: Gain-of-function SCN9A mutations cause paroxysmal extreme pain disorder, directly linking Nav1.7 dysfunction to abnormal pain perception.
Reason: Human-genetics (mutant-phenotype) evidence for the core pain-perception role of Nav1.7.
Supporting Evidence:
PMID:17145499
an inherited condition characterized by paroxysms of rectal, ocular, or submandibular pain with flushing

Core Functions

Nav1.7 is the pore-forming alpha subunit of a tetrodotoxin-sensitive voltage-gated sodium channel that opens on membrane depolarization and selectively conducts Na+ down its electrochemical gradient across the plasma membrane, mediating the rising/depolarizing phase of the action potential.

Supporting Evidence:
  • PMID:7720699
    The channel exhibited rapid activation and inactivation kinetics, and was blocked by tetrodotoxin and cadmium with IC50 values of 24.5 nM and 1.1 mM, respectively.
  • PMID:30765606
    Here we report the cryo-electron microscopy structures of the human Nav1.7-Ξ²1-Ξ²2 complex
  • file:human/SCN9A/SCN9A-deep-research-falcon.md
    NaV1.7 is selective for Na+ and shares the canonical NaV architecture and **DEKA selectivity filter** (Asp-Glu-Lys-Ala across DI-DIV) described for eukaryotic NaV alpha subunits.

In peripheral nociceptor (and sympathetic) neurons, Nav1.7 acts as a threshold/amplifier channel that boosts subthreshold depolarizations and sets the gain for neuronal action potential firing, making it an essential, non-redundant determinant of pain sensation. It localizes to the soma membrane, axons, axon/nerve terminals, and nodes of Ranvier.

Supporting Evidence:
  • PMID:17167479
    Our data suggest that SCN9A is an essential and non-redundant requirement for nociception in humans.
  • PMID:30795902
    neither noxious temperature nor noxious mechanical stimuli were felt as painful
  • PMID:30795902
    NaV1.7 could be seen localized to >90% of nodes of Ranvier in myelinated axons
  • file:human/SCN9A/SCN9A-deep-research-falcon.md
    in nociceptors it is strongly implicated in determining excitability near threshold and thereby controlling pain signaling.

References

Gene Ontology annotation through association of InterPro records with GO terms
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
Annotation inferences using phylogenetic trees
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
Electronic Gene Ontology annotations created by ARBA machine learning models
Combined Automated Annotation using Multiple IEA Methods
Electrophysiological properties of mutant Nav1.7 sodium channels in a painful inherited neuropathy.
  • Erythromelalgia (PERYTHM) gain-of-function mutations shift Nav1.7 activation to more hyperpolarized potentials, supporting cell-membrane localization and a role in nociceptor hyperexcitability.
    "Electrophysiological properties of mutant Nav1.7 sodium channels in a painful inherited neuropathy."
SCN9A mutations in paroxysmal extreme pain disorder: allelic variants underlie distinct channel defects and phenotypes.
  • PEPD is caused by SCN9A gain-of-function missense mutations that reduce Nav1.7 fast inactivation, producing persistent sodium current and linking the channel to a heritable pain disorder.
    "Functional analysis in vitro of three of these mutant Na(v)1.7 channels revealed a reduction in fast inactivation, leading to persistent sodium current."
An SCN9A channelopathy causes congenital inability to experience pain.
  • Biallelic SCN9A nonsense mutations (S459X, I767X, W897X) cause complete loss of Nav1.7 function and congenital inability to perceive pain, with all other sensory modalities preserved.
    "Our data suggest that SCN9A is an essential and non-redundant requirement for nociception in humans."
  • Nav1.7 is the alpha-subunit of a TTX-sensitive voltage-gated sodium channel strongly expressed in nociceptive DRG neurons.
    "encoding the alpha-subunit of the voltage-gated sodium channel, Na(v)1.7, which is strongly expressed in nociceptive neurons"
Early- and late-onset inherited erythromelalgia: genotype-phenotype correlation.
  • Inherited erythromelalgia gain-of-function Nav1.7 mutations correlate with age of onset, supporting cell-membrane localization and the channel's role in pain.
    "Early- and late-onset inherited erythromelalgia: genotype-phenotype correlation."
Inherited pain: sodium channel Nav1.7 A1632T mutation causes erythromelalgia due to a shift of fast inactivation.
  • The A1632T erythromelalgia mutation alters Nav1.7 fast inactivation, a gain-of-function mechanism, with the channel expressed at the cell membrane.
    "sodium channel Nav1.7 A1632T mutation causes erythromelalgia due to a shift of fast inactivation"
Protein kinase C enhances human sodium channel hNav1.7 resurgent currents via a serine residue in the domain III-IV linker.
  • PKC phosphorylation at Ser-1490 in the domain III-IV linker enhances Nav1.7 resurgent sodium currents, modulating the membrane-resident channel.
    "Protein kinase C enhances human sodium channel hNav1.7 resurgent currents via a serine residue in the domain III-IV linker."
Structural basis of Nav1.7 inhibition by an isoform-selective small-molecule antagonist.
  • Crystallographic study of a Nav1.7 voltage-sensor domain bound by an isoform-selective antagonist, consistent with the channel as a membrane-embedded drug target.
    "Structural basis of Nav1.7 inhibition by an isoform-selective small-molecule antagonist."
Structures of human Na(v)1.7 channel in complex with auxiliary subunits and animal toxins.
  • Cryo-EM structures show human Nav1.7 alpha subunit assembled with auxiliary beta subunits (SCN1B/SCN2B) into the voltage-gated sodium channel complex, a multi-pass membrane protein.
    "Here we report the cryo-electron microscopy structures of the human Nav1.7-Ξ²1-Ξ²2 complex"
Defining the Functional Role of Na(V)1.7 in Human Nociception.
  • In CIP participants with biallelic loss-of-function SCN9A mutations, noxious thermal and mechanical stimuli are not perceived as painful, while mechanical/vibration detection thresholds remain normal.
    "neither noxious temperature nor noxious mechanical stimuli were felt as painful"
  • CRISPR-tagged endogenous Nav1.7 localizes to the soma membrane, axons, axon terminals, and >90% of nodes of Ranvier in human iPSC-derived nociceptors.
    "NaV1.7 could be seen localized to >90% of nodes of Ranvier in myelinated axons"
Pain-causing stinging nettle toxins target TMEM233 to modulate Na(V)1.7 function.
  • Nav1.7 interacts with the transmembrane protein TMEM233 (B4DJY2), which modulates channel gating; this is the basis of the GO:0005515 protein binding annotation.
    "Pain-causing stinging nettle toxins target TMEM233 to modulate Na(V)1.7 function."
Structure and functional expression of a new member of the tetrodotoxin-sensitive voltage-activated sodium channel family from human neuroendocrine cells.
  • hNE-Na (Nav1.7) is a 1977-aa TTX-sensitive voltage-activated sodium channel; heterologous expression yields rapidly activating/inactivating Na+ currents and generates action potentials.
    "The channel exhibited rapid activation and inactivation kinetics, and was blocked by tetrodotoxin and cadmium with IC50 values of 24.5 nM and 1.1 mM, respectively."
  • SCN9A transcripts are not detectable in heart, indicating Nav1.7 is not a cardiac sodium channel.
    "Transcripts were not identified in pituitary gland, brain, heart, liver or kidney"
file:human/SCN9A/SCN9A-deep-research-falcon.md
Falcon deep research report for human SCN9A
  • Falcon deep research affirms the core molecular function as a voltage-gated Na+ channel selective for Na+ via the canonical DEKA selectivity filter (Asp-Glu-Lys-Ala across DI-DIV), supporting the GO:0005248 / GO:0005261 annotations.
    "NaV1.7 is selective for Na+ and shares the canonical NaV architecture and **DEKA selectivity filter** (Asp-Glu-Lys-Ala across DI-DIV) described for eukaryotic NaV alpha subunits."
  • Falcon deep research frames Nav1.7 as a nociceptor "threshold channel" enriched at the plasma membrane of DRG, trigeminal and sympathetic ganglion neurons, consistent with the sensory-perception-of-pain and plasma-membrane annotations.
    "NaV1.7 is a **plasma-membrane** channel enriched in **nociceptive neurons**, with high expression reported in **dorsal root ganglia (DRG)**, **trigeminal ganglia**, and **sympathetic ganglia**."
  • Falcon deep research corroborates that TMEM233 (a dispanin-family protein) is an essential Nav1.7-interacting accessory protein, supporting the regulatory interpretation of the GO:0005515 (TMEM233) annotation rather than generic protein binding.
    "identified **TMEM233 (a dispanin-family protein)** as an essential **NaV1.7-interacting accessory protein** for the action of the plant-derived knottin toxin **Excelsatoxin A (ExTxA)**."
  • Falcon deep research highlights regulation of Nav1.7 surface density by NEDD4L-mediated ubiquitination of a C-terminal PY motif - a trafficking/turnover regulatory axis (consistent with the UniProt NEDD4/NEDD4L SUBUNIT note) that is not captured by any current GOA annotation.
    "the E3 ligase **NEDD4L ubiquitinates the cytoplasmic C-terminus of NaV1.7** ... **post-translational modification and trafficking/turnover regulation** are likely important determinants of NaV1.7 surface density and nociceptor excitability."

Deep Research

Asta

(SCN9A-deep-research-asta.md)
Asta Literature Retrieval: Research SCN9A Nav1.7 sodium channel function in human Asta Asta Scientific Corpus Retrieval 63 citations 2026-06-16T05:37:37.264563

Asta Literature Retrieval: Research SCN9A Nav1.7 sodium channel function in human

This report is retrieval-only and is generated directly from Asta results.

  • Papers retrieved: 63
  • Snippets retrieved: 20

Relevant Papers

[1] Painless Nav1.7 mutations reveal function-critical residues in the outer vestibule and N-terminus

  • Authors: Nivedita Sarveswaran, I. Drissi, Samiha S. Shaikh, M. Nahorski, Fiona Cusdin et al.
  • Year: 2025
  • Venue: bioRxiv
  • URL: https://www.semanticscholar.org/paper/c48d4918f0695924376cbdac19b96b7a48bba365
  • DOI: 10.1101/2025.05.12.653536
  • Summary: Functional analysis and in silico modelling reveal critical roles for residues in the extracellular vestibule, ion selectivity filter and unexpectedly, the N-terminus in voltage-gated sodium channel Nav1.7, a key modulator of nociceptor excitability and associated with congenital painlessness.

[2] Comprehensive Proteomic Profiling of Human Nav1.7-Interacting Proteins Reveals Conserved Regulatory Networks Involved in Nociceptive Signaling

  • Authors: Xuelong Zhou, Jing Zhao
  • Year: 2025
  • Venue: Neuroscience Insights
  • URL: https://www.semanticscholar.org/paper/3033c52f684cffa5b6a3f676b4bc177da7ef8f43
  • DOI: 10.1177/26331055251405071
  • PMID: 41393971
  • PMCID: 12698995
  • Summary: This study employed tandem affinity purification (TAP) combined with high-resolution liquid chromatography-tandem mass spectrometry (LC-MS/MS) to systematically characterize the protein-protein interaction (PPI) network of hNav1.7, offering potential targets for modulating channel function in pain pathophysiology.

[3] A Review of the Therapeutic Targeting of SCN9A and Nav1.7 for Pain Relief in Current Human Clinical Trials

  • Authors: A. Dormer, Mahesh Narayanan, J. Schentag, D. Achinko, E. Norman et al.
  • Year: 2023
  • Venue: Journal of Pain Research
  • URL: https://www.semanticscholar.org/paper/bc7f32892fa6b4ed6ec47cf1ff74f0269c0df16c
  • DOI: 10.2147/JPR.S388896
  • PMID: 37168847
  • PMCID: 10166096
  • Citations: 27
  • Influential citations: 7
  • Summary: The review will look at the genomics associated with SCN1A and proteomic of Nav1.7 as a foundation to explain the mechanism of the therapeutic interventions targeting Nav 1.7 for the relief of chronic pain in humans.
  • Evidence snippets:
  • Snippet 1 (score: 0.579)
    > A Review of the Therapeutic Targeting of SCN9A and Nav1.7 for Pain Relief in Current Human Clinical Trials
  • Snippet 2 (score: 0.527)
    > Neuronal sodium channels are coding by a family of genes, one of which is called sodium voltage-gated channel alpha subunit 9 (SCN9A). 1 This gene encodes for sodium channels that are designed to assist in the transportation of positively charged sodium atoms (Na + ions) into the cell. This action plays a vital role in the generation and the propagation of electrical signals along the neuron. 2 A study which included 95 individuals was conducted of which from these persons 27 different tissues were examined to determine the SCN9A expression. The determination of SCN9A protein coding gene tissue-specificity was analyzed using RNA-seq. It was found that SCN9A was expressed in all 27 different tissues at variant degree. The highest expression of SCN9A in non-neuronal tissues was in testis, placenta, and colon. [3][4][5] SCN9A consists of 180,803 nucleotides which encodes a 1988 amino acid Nav1.7 protein. 6 Nav1.7 is the sodium channel expression protein of the SCN9A gene. 7 The pain signals that are transmitted to the brain are facilitated by Nav1.7 nociceptors preferentially expressed on the neurons that are part of the peripheral nervous system. 8 The peripheral nervous system (PNS) is connected to the central nervous system (CNS) which consists of the brain and the spinal cord. 9 Nociceptors, which are part of the PNS, consist of cells that have the ability to detect many different types of sensation including pain, smell, and taste. 10 Neuronal structures consisting of nociceptors are designed primarily in the transmission of pain signals. 11 It is within the cell bodies that the centers of nociceptors are found. Those centers are located within the dorsal root ganglion of the spinal cord. 12 The nerve fibers that extend from those cells' bodies come from all over the human body receiving sensory information from the periphery that will be transmitted to the brain. 12 SCN9A which is the gene that encodes for the voltage-gated Nav1.7 sodium channel have a major role in the proper functioning of the nociceptive signaling. 13 Mutations within SCN9A gene have been associated with

[4] ProTx-II, a Selective Inhibitor of NaV1.7 Sodium Channels, Blocks Action Potential Propagation in Nociceptors

  • Authors: W. Schmalhofer, Jeffrey D Calhoun, R. Burrows, Timothy Bailey, M. Kohler et al.
  • Year: 2008
  • Venue: Molecular Pharmacology
  • URL: https://www.semanticscholar.org/paper/8e6ab4b971046295c7403903b927f3f046272326
  • DOI: 10.1124/mol.108.047670
  • PMID: 18728100
  • Citations: 307
  • Influential citations: 26
  • Summary: The 125I-ProTx-II binding assay, described here, offers a new tool in the search for novel NaV1.7-selective channel blockers, suggesting that ProTx- II binds to a novel site, which may be more conducive to conferring subtype selectivity than the site occupied by traditional local anesthetics and anticonvulsants.

[5] Effect of NaV1.7 blockers on post-ganglionic sympathetic nerve function

  • Authors: Joyce Kim, S. Meeker, Fei Ru, Minh Tran, Tanja S Zabka et al.
  • Year: 2024
  • Venue: Physiology
  • URL: https://www.semanticscholar.org/paper/195e7388967320cac98395e112bf72e8ce8cab72
  • DOI: 10.1152/physiol.2024.39.s1.803
  • Summary: The hypothesis that pharmacological inhibition of NaV1.7 using selective inhibitors has the potential to reduce sympathetic function in specific vascular beds is supported, and the hypothesis that NaV1.7 blockers may be effective non-opioids analgesics is supported.

[6] Preclinical Animal Models to Investigate the Role of Nav1.7 Ion Channels in Pain

  • Authors: Alvaro Yogi, Umberto Banderali, M. Moreno, Marzia Martina
  • Year: 2025
  • Venue: Life
  • URL: https://www.semanticscholar.org/paper/00eb8fca4ec7091f9a6d18318ec0e711f9714fa2
  • DOI: 10.3390/life15040640
  • PMID: 40283194
  • PMCID: 12028925
  • Citations: 11
  • Summary: This review summarizes the pain behavior profiles mediated by Nav1.7 reported in multiple preclinical models, outlining the current knowledge of the biophysical, physiological, and distribution properties required for a Nav1.7 inhibitor to produce analgesia.

[7] NaV1.7 mRNA and protein expression in putative projection neurons of the human spinal dorsal horn

  • Authors: Stephanie I. Shiers, G. Funk, Anna M. Cervantes, Peter Horton, G. Dussor et al.
  • Year: 2023
  • Venue: bioRxiv
  • URL: https://www.semanticscholar.org/paper/8a1ee0238e21f3870db4056d942489e1e80293d8
  • DOI: 10.1101/2023.02.04.527110
  • PMID: 36778234
  • PMCID: 9915702
  • Citations: 2
  • Summary: It is reported for the first time that NaV1.7 mRNA is expressed in putative projection neurons (NK1R+) in the human spinal dorsal horn, predominantly in lamina 1 and 2, as well as in deep dorsal horn neurons and motor neurons in the ventral horn.

[8] Mepyramine targets mutant Nav1.7 channels to relieve pain and erythema in primary erythromelalgia patients

  • Authors: Myriam-Isabelle Ducrocq, Virginie Penalba, Laura Castillo, C. Bodemer, CΓ©line Greco et al.
  • Year: 2025
  • Venue: Frontiers in Medicine
  • URL: https://www.semanticscholar.org/paper/b125daffdd3185c5f0fb970f2e586344b52576aa
  • DOI: 10.3389/fmed.2025.1744968
  • PMID: 41458489
  • PMCID: 12740923
  • Summary: It is demonstrated that mepyramine, a compound previously shown to alleviate pain in animal models, effectively targets hNav1.7 channels carrying PEM-associated gain-of-function mutations, providing substantial pain relief in PEM patients.

[9] Structure-function and rational design of a spider toxin Ssp1a at human voltage-gated sodium channel subtypes

  • Authors: Y. Dongol, D. Wilson, N. Daly, Fernanda C Cardoso, Richard J. Lewis
  • Year: 2023
  • Venue: Frontiers in Pharmacology
  • URL: https://www.semanticscholar.org/paper/a540fab54dcceb089ee32a5bfd3293a57f8d8381
  • DOI: 10.3389/fphar.2023.1277143
  • PMID: 38034993
  • PMCID: 10682951
  • Citations: 2
  • Summary: The challenge of developing subtype-selective spider toxin inhibitors across multiple NaV subtypes that might offer a more effective therapeutic approach is highlighted, with S7R-E18K-rSsp1a and N14D-P27R- rSSP1a identified as promising leads.

[10] Design, synthesis, structure-activity relationship (SAR) and analgesic effect studies of novel arylsulfonamides as selective Nav1.7 inhibitors.

  • Authors: Ruokun Wu, Wenfeng Chen, Xueyuan Wang, Xinran Ye, Hang Miao et al.
  • Year: 2025
  • Venue: European journal of medicinal chemistry
  • URL: https://www.semanticscholar.org/paper/c2311d63427be8ad1fedb39a79efbac8980b0308
  • DOI: 10.1016/j.ejmech.2025.118069
  • PMID: 40882438
  • Summary: Compound 50 was found to show favorable microsomal stability, in vivo safety, high selectivity and a low potential risk of cardiotoxicity, and results suggested that compound 50 might be a potent candidate for the treatment of neuropathic pain.

[11] Endogenous opioids contribute to insensitivity to pain in humans and mice lacking sodium channel Nav1.7

  • Authors: M. S. Minett, Vanessa Pereira, Shafaq Sikandar, A. Matsuyama, S. Lolignier et al.
  • Year: 2015
  • Venue: Nature Communications
  • URL: https://www.semanticscholar.org/paper/8ebed48db0a93c9478ce8b71a6160058492eb1f6
  • DOI: 10.1038/ncomms9967
  • PMID: 26634308
  • PMCID: 4686868
  • Citations: 180
  • Influential citations: 16
  • Summary: Evidence is provided that Nav1.7 deletion leads to transcriptional upregulation of opioid peptides in sensory neurons, and that treatment with the opioid blocker naloxone helps reverse analgesia in mice and human Nav.7 nulls.

[12] Uncoupling sodium channel dimers restores the phenotype of a pain‐linked Nav1.7 channel mutation

  • Authors: Annika H RΓΌhlmann, Jannis KΓΆrner, R. Hausmann, Nikolay Bebrivenski, C. Neuhof et al.
  • Year: 2020
  • Venue: British Journal of Pharmacology
  • URL: https://www.semanticscholar.org/paper/99fcd5eb49be2ed659877ac82adbb1d54286dc7e
  • DOI: 10.1111/bph.15196
  • PMID: 32663327
  • PMCID: 7484505
  • Citations: 21
  • Influential citations: 2
  • Summary: This work investigated how the inactivation particle binds to the channel, how this mechanism is altered by the hNav1.7/A1632E mutation, and how dimerization modifies function of the pain‐linked mutation.

[13] Functional confirmation that the R1488* variant in SCN9A results in complete loss-of-function of Nav1.7

  • Authors: Wen He, G. Young, Baohong Zhang, Peter J. Cox, L. T. Cho et al.
  • Year: 2018
  • Venue: BMC Medical Genetics
  • URL: https://www.semanticscholar.org/paper/091bfa419798d09f0ae5642a0f37cbf5deec2d50
  • DOI: 10.1186/s12881-018-0643-4
  • PMID: 30037327
  • PMCID: 6057094
  • Citations: 8
  • Influential citations: 1
  • Summary: Functional characterisations of some of these SCN9A mutations show that they result in complete loss-of-function of Nav1.7, which is consistent with reports on other variants in this gene in subjects with CIP.
  • Evidence snippets:
  • Snippet 1 (score: 0.616)
    > Functional confirmation that the R1488* variant in SCN9A results in complete loss-of-function of Nav1.7

[14] Loss-of-function mutations in sodium channel Nav1.7 cause anosmia

  • Authors: J. Weiss, M. Pyrski, Eric Jacobi, B. Bufe, V. Willnecker et al.
  • Year: 2011
  • Venue: Nature
  • URL: https://www.semanticscholar.org/paper/aa894eb1b536c670be80ac6243848192bd12c6bb
  • DOI: 10.1038/nature09975
  • PMID: 21441906
  • PMCID: 3674497
  • Citations: 280
  • Influential citations: 20
  • Summary: This study creates a mouse model of congenital general anosmia and provides new strategies to explore the genetic basis of the human sense of smell as well as establishing the essential role of Nav1.7 in odour perception.

[15] Abstract 5904: Targeting NaV1.7 channels in pancreatic cancer: Implications for EF2K and P-Src/P-Fak/integrin Ξ²1 signaling pathways

  • Authors: M. Erdoğan, Ayse Caner
  • Year: 2024
  • Venue: Cancer Research
  • URL: https://www.semanticscholar.org/paper/955b3c3a2acd4394744974052ba9690f435fd49d
  • DOI: 10.1158/1538-7445.am2024-5904
  • Summary: NaV1.7 channel isoforms play a significant role in the development, progression, and metastasis of pancreatic cancer and present as a potential therapeutic target in PaCa, according to this pioneering study.

[16] Function and role of voltage-gated sodium channel NaV1.7 expressed in aortic smooth muscle cells.

  • Authors: K. Meguro, H. Iida, Haruhito Takano, T. Morita, M. Sata et al.
  • Year: 2009
  • Venue: American journal of physiology. Heart and circulatory physiology
  • URL: https://www.semanticscholar.org/paper/a5185f4d56339f3428b9a54ea9b2a7d32c4ce633
  • DOI: 10.1152/ajpheart.00960.2008
  • PMID: 18978189
  • Citations: 36
  • Influential citations: 1
  • Summary: It is shown that I(Na) is expressed in cultured and diseased conditions but not in normal aorta, and the Na(V)1.7 plays an important role in cell migration, endocytosis, and secretion.
  • Authors: D. Kapetis, J. Sassone, Yang Yang, B. Galbardi, M. Xenakis et al.
  • Year: 2017
  • Venue: BMC Systems Biology
  • URL: https://www.semanticscholar.org/paper/67e431bb30ead26c4c703479331c750602a7cf0b
  • DOI: 10.1186/s12918-016-0382-0
  • PMID: 28235406
  • PMCID: 5324268
  • Citations: 31
  • Summary: The authors' in-silico analyses predict that pain-related pathogenic NaV1.7 mutations may affect the network topological properties of the protein and suggest |Ξ”Bct| value as a potential in- silico marker.
  • Evidence snippets:
  • Snippet 1 (score: 0.537)
    > SCN9A gene encodes the alpha-subunit of voltage-gated sodium channel NaV1.7 that is expressed in dorsal root ganglion (DRG) nociceptors and in sympathetic neurons. NaV1.7 is folded into four homologous domains, each containing six transmembrane helices (S1-S6). S1-S4 helices form the voltage-sensing domain (VSD) and highly conserved basic residues in S4 sense the electric field across the membrane. S5-S6 helices with the reentrant extracellular loop in between form the pore domain (PD) [1]. Membrane depolarisation induces a conformational change in the VSD that, through the S4-S5 linker, is transmitted to the PD and prompt the gate to open, allowing the passage of sodium ions through the pore [2]. Opening and closing of the channel modulate the subthreshold membrane potential of nociceptors and play a key role in regulating their firing.
    > Missense mutations in SCN9A have been associated to a spectrum of painful conditions in humans [3], including inherited erythromelalgia (IEM), [4][5][6][7][8][9][10][11][12][13], paroxysmal extreme pain disorder (PEPD) [14][15][16][17], and small fibre neuropathy (SFN) [18,19]. Voltage-clamp recording, performed in transfected cell lines and DRG neurons in vitro, showed that IEM-related mutations enhance the activation of NaV1.7 through a hyperpolarising shift and a slower deactivation that keeps the channel open longer once it is activated [3], thus generating a larger-thannormal inward sodium current, with greater biophysical changes at higher temperature [20]. PEPD-related NaV1.7 mutations impair channel inactivation and prolong action potentials and repetitive nociceptor firing in response to provoking stimuli, such as stretching and exposure to cold temperatures [14,16,21].

[18] Analgesia linked to Nav1.7 loss of function requires Β΅-and Ξ΄-opioid receptors [version 1; peer review: 2 approved]

  • Authors: V. Pereira, Queensta Millet, J. Aramburu, C. LΓ³pez-RodrΓ­guez, C. GavΓ©riaux-Ruff et al.
  • Year: 2022
  • Venue: Unknown venue
  • URL: https://www.semanticscholar.org/paper/66ab9b96f25aaa128c0bdd991653e018c4e40b74
  • Summary: Functional deletion of the Scn9a gene encoding sodium channel Nav1.7 makes humans and mice pain-free and the regulation of proenkephalin expression by the transcription factor Nfat5 that binds upstream of the Penk gene is examined.

[19] Loss‐of‐function mutations in the Nav1.7 gene underlie congenital indifference to pain in multiple human populations

  • Authors: Y. Goldberg, J. Macfarlane, M. Macdonald, Jay Thompson, M. DubΓ© et al.
  • Year: 2007
  • Venue: Clinical Genetics
  • URL: https://www.semanticscholar.org/paper/e0ae0f882c88769dd625fdd4a1a6479e2b3b6766
  • DOI: 10.1111/j.1399-0004.2007.00790.x
  • PMID: 17470132
  • Citations: 451
  • Influential citations: 15
  • Summary: Genetic data further support the evidence that Nav1.7 plays an essential role in mediating pain in humans, and that SCN9A mutations identified in multiple different populations underlie CIP.

[20] Post-transcriptional regulation and protein-protein interactions of the voltage-gated sodium channel Nav1.7

  • Authors: J. Koenig
  • Year: 2015
  • Venue: Unknown venue
  • URL: https://www.semanticscholar.org/paper/9079a2ce82785d07a67f83947752d6bc76d2f6f8
  • Citations: 1
  • Summary: The aim of this thesis was to gain a greater understanding of Nav1.7, a promising analgesic drug target as individuals with loss of function mutations are normal except for a complete inability to perceive pain and having anosmia, and is a potential candidate gene for individuals with chronic pain disorders that map to the SCN9A locus.

[21] Voltage‐dependent Nav1.7 sodium channels: multiple roles in adrenal chromaffin cells and peripheral nervous system

  • Authors: A. Wada, E. Wanke, F. Gullo, E. Schiavon
  • Year: 2007
  • Venue: Acta Physiologica
  • URL: https://www.semanticscholar.org/paper/2ec226b9ec674ac45b815fcc8b1738bd86a734d4
  • DOI: 10.1111/j.1748-1716.2007.01810.x
  • Citations: 29
  • Influential citations: 1
  • Summary: Various extra‐ and intracellular signals, as well as therapeutic drugs modulate the activity of Nav1.7, which seems to play an increasing number of crucial roles in health, disease and therapeutics.

[22] Analgesia linked to Nav1.7 loss of function requires Β΅- and Ξ΄-opioid receptors

  • Authors: Vanessa Pereira, Queensta Millet, J. Aramburu, C. LΓ³pez-RodrΓ­guez, C. GavΓ©riaux-Ruff et al.
  • Year: 2018
  • Venue: Wellcome Open Research
  • URL: https://www.semanticscholar.org/paper/154dd8ed313d28ae9c773c7a8262990c40477a80
  • DOI: 10.12688/wellcomeopenres.14687.1
  • PMID: 30271888
  • PMCID: 6134336
  • Citations: 27
  • Influential citations: 1
  • Summary: Higher levels of endogenous enkephalins, potentiated opioid receptors, diminished electrical excitability and loss of neurotransmitter release together contribute to the analgesic phenotype found in Nav1.7-null mouse and human mutants.

[23] Pharmacological characterization of a rat Nav1.7 loss-of-function model with insensitivity to pain.

  • Authors: Lubin Chen, Philip R. Effraim, Jennifer Carrara, P. Zhao, Fadia B. Dib-Hajj et al.
  • Year: 2020
  • Venue: Pain
  • URL: https://www.semanticscholar.org/paper/31ddc6cd0c6919172e87af1b0853992879ddf2cf
  • DOI: 10.1097/j.pain.0000000000001807
  • PMID: 31977939
  • Citations: 20
  • Summary: It is found that both the opioid receptor antagonist naloxone and cannabinoid receptor blockers SR141716A (rimonabant) and SR144528 fail to restore acute pain sensitivity in Nav1.7 loss-of-function rats, and this data suggest that endogenous opioid and cannabinoid systems are not required for insensitivity to pain in the absence of Nav 1.7 channels.

[24] Paroxysmal extreme pain disorder M1627K mutation in human Nav1.7 renders DRG neurons hyperexcitable

  • Authors: S. Dib-Hajj, M. Estacion, Brian W. Jarecki, L. Tyrrell, Tanya Z. Fischer et al.
  • Year: 2008
  • Venue: Molecular Pain
  • URL: https://www.semanticscholar.org/paper/9d8bcb953c00ae3be10211ae6e629d1cea0b504c
  • DOI: 10.1186/1744-8069-4-37
  • PMID: 18803825
  • PMCID: 2556659
  • Citations: 133
  • Influential citations: 3
  • Summary: It is shown that M1627K does not alter development of closed-state inactivation, and that M 1627K channels recover from fast-inactivation faster than wild type channels, and produce larger currents in response to a slow ramp stimulus, and render DRG neurons hyperexcitable.

[25] Voltage-Gated Sodium Channel Nav1.7 Maintains the Membrane Potential and Regulates the Activation and Chemokine-Induced Migration of a Monocyte-Derived Dendritic Cell Subset

  • Authors: K. Kis‐TΓ³th, P. HajdΓΊ, I. Bacskai, Orsolya SzilΓ‘gyi, F. Papp et al.
  • Year: 2011
  • Venue: The Journal of Immunology
  • URL: https://www.semanticscholar.org/paper/f2291852cfee759fda6d51f1edc52b0ae13e8fde
  • DOI: 10.4049/jimmunol.1003345
  • PMID: 21715690
  • Citations: 55
  • Influential citations: 3
  • Summary: Fine-tuning of IDC functions by a voltage-gated sodium channel emerges as a new regulatory mechanism modulating the migration and cytokine responses of these DC subsets.

[26] Regulation of Nav1.7: A Conserved SCN9A Natural Antisense Transcript Expressed in Dorsal Root Ganglia

  • Authors: J. Koenig, R. Werdehausen, J. Linley, Abdella M. Habib, J. Vernon et al.
  • Year: 2015
  • Venue: PLoS ONE
  • URL: https://www.semanticscholar.org/paper/c17104b3928397bbed2b56950964fea8bdce301c
  • DOI: 10.1371/journal.pone.0128830
  • PMID: 26035178
  • PMCID: 4452699
  • Citations: 31
  • Influential citations: 3
  • Summary: The results strongly suggest the SCN9A NAT as a prime candidate for new therapies based upon augmentation of existing antisense RNAs in the treatment of chronic pain conditions in man.

[27] Insensitivity to Pain upon Adult-Onset Deletion of Nav1.7 or Its Blockade with Selective Inhibitors

  • Authors: S. Shields, L. Deng, Rebecca M. Reese, M. Dourado, Janet Tao et al.
  • Year: 2018
  • Venue: The Journal of Neuroscience
  • URL: https://www.semanticscholar.org/paper/cd746099682fd84a984b52626039a345762f7e99
  • DOI: 10.1523/JNEUROSCI.1049-18.2018
  • PMID: 30301756
  • Citations: 83
  • Influential citations: 11
  • Summary: It is demonstrated that selective Nav1.7 inhibitors can approximate the effects of genetic loss of function, which previously has not been directly established, and show robust analgesic and antinociceptive activity acutely after a single dose in mouse pain models shown to be Nav2.7-dependent.

[28] Treatment of Nav1.7‐mediated pain in inherited erythromelalgia using a novel sodium channel blocker

  • Authors: Y. P. Goldberg, N. Price, R. Namdari, C. Cohen, M. H. Lamers et al.
  • Year: 2012
  • Venue: Pain
  • URL: https://www.semanticscholar.org/paper/d73c926daaefe80f1c7423cf738973c0ab4f047a
  • DOI: 10.1016/j.pain.2011.09.008
  • PMID: 22035805
  • Citations: 139
  • Influential citations: 3
  • Summary: This pilot study showed that XEN402 blocks Nav1.7‐mediated pain associated with IEM, thereby demonstrating target engagement in humans and underscoring the use of rare genetic disorders with mutant target channels as a novel approach to rapid proof‐of‐concept for novel analgesics.

[29] Analgesia linked to Nav1.7 loss of function requires ΞΌ and Ξ΄ opioid receptors

  • Authors: Vanessa Pereira, Queensta Millet, J. Aramburu, C. LΓ³pez-RodrΓ­guez, Claire Gaveriaux Ruff et al.
  • Year: 2018
  • Venue: bioRxiv
  • URL: https://www.semanticscholar.org/paper/51fcdb097c5e91c03e9ad521d4da78caebc984ef
  • DOI: 10.1101/297184
  • Citations: 1
  • Summary: It is shown that the pharmacological block or deletion of both ΞΌ and Ξ΄ opioid receptors is required to abolish Nav1.7 null opioid-related analgesia and this data confirm that a combination of events linked to SCN9A gene loss is required for analgesia.

[30] Mining the NaV1.7 interactome: Opportunities for chronic pain therapeutics

  • Authors: Lindsey A. Chew, S. Bellampalli, E. Dustrude, R. Khanna
  • Year: 2019
  • Venue: Biochemical pharmacology
  • URL: https://www.semanticscholar.org/paper/f80dbd90600cb2a5bf68a8c95937c87677789566
  • DOI: 10.1016/j.bcp.2019.01.018
  • PMID: 30699328
  • PMCID: 6470000
  • Citations: 37
  • Influential citations: 2
  • Summary: This work mines the literature for the known interactome of NaV1.7 with a focus on protein interactors that affect the channel’s trafficking or link it to opioid signaling, and presents antinociceptive evidence of allosteric regulation of NaV1.7 by the cytosolic collapsin response mediator protein 2 (CRMP2).

[31] Nav1.7 and Nav1.8 form supramolecular active clusters with TRKB in mouse and human DRG neurons during development of neuropathic pain

  • Authors: L. Sun, H. Xian, Y. Shi, T. Yang, H. Shuai et al.
  • Year: 2022
  • Venue: medRxiv
  • URL: https://www.semanticscholar.org/paper/a3d7ed67d8e3a5d55230fc0f4b933e2e8a173848
  • DOI: 10.1101/2022.11.05.22281929
  • Summary: These findings suggest that supramolecular active clusters of Nav1.8 and TRKB might need be targeted for curing neuropathic pain, and that inhibition of both Nav 1.7 and Nav.8 might be required to achieve efficient relief of neuropathicPain.

[32] Voltage-Gated Sodium Channel Nav1.7 Maintains the Membrane Potential and Regulates Chemokine-Induced Migration of a Subpopulation of Monocyte-Derived Dendritic Cells

  • Authors: P. HajdΓΊ, K. Kis‐TΓ³th, F. Papp, A. Szántó, E. Posta et al.
  • Year: 2011
  • Venue: Biophysical Journal
  • URL: https://www.semanticscholar.org/paper/f7f0387fe0985d7ffc3bb85fe3c58759a1f65969
  • DOI: 10.1016/J.BPJ.2010.12.709
  • Summary: The control of IDC function by a voltage-gated sodium channel emerges as a new regulatory mechanism modulating the migration and other responses of these DC subsets.

[33] Nav1.7-P610T mutation in 2 siblings with persistent ocular pain after corneal axon transection: impaired slow-inactivation and hyperexcitable trigeminal neurons.

  • Authors: Mohammad-Reza Ghovanloo, Philip R. Effraim, Jun-Hui Yuan, Betsy R. Schulman, D. Jacobs et al.
  • Year: 2023
  • Venue: Journal of neurophysiology
  • URL: https://www.semanticscholar.org/paper/9580c3e5a63259e142d2ff4f0ecec554f6aaeeaa
  • DOI: 10.1152/jn.00457.2022
  • PMID: 36722722
  • Citations: 15
  • Summary: The biophysical and electrophysiological profiling of the P610T-Nav1.7 mutation found in two male siblings with persistent ocular pain after refractive surgery indicates that this mutation impairs the slow inactivation of Nav1.

[34] Selective Targeting of Nav1.7 with Engineered Spider Venom-Based Peptides

  • Authors: R. Neff, A. Wickenden
  • Year: 2021
  • Venue: Channels
  • URL: https://www.semanticscholar.org/paper/7593bb3a3d9b9b80d058a7644e8fdac32d3a59f7
  • DOI: 10.1080/19336950.2020.1860382
  • PMID: 33427574
  • PMCID: 7808416
  • Citations: 10
  • Influential citations: 1
  • Summary: A summary of research that has focused on engineering peptides found in spider venoms to produce Nav1.7 selective antagonists is presented, discussing the progress that has been made on various scaffolds from different venom families and highlighting the challenges that remain.

[35] Distinct Nav1.7-dependent pain sensations require different sets of sensory and sympathetic neurons

  • Authors: M. S. Minett, Mohammed A. Nassar, A. Clark, G. Passmore, A. Dickenson et al.
  • Year: 2012
  • Venue: Nature Communications
  • URL: https://www.semanticscholar.org/paper/c4295be5ab37d3a6f50b993403370dd724ad8332
  • DOI: 10.1038/ncomms1795
  • PMID: 22531176
  • PMCID: 3337979
  • Citations: 271
  • Influential citations: 21
  • Summary: It is shown that Nav1.7 expression in different sets of mouse sensory and sympathetic neurons underlies distinct types of pain sensation, and possible insights into the mechanisms that underlie gain-of-function Nav 1.7-dependent pain conditions are provided.
  • Evidence snippets:
  • Snippet 1 (score: 0.612)
    > Human acute and inflammatory pain requires the expression of voltage-gated sodium channel Nav1.7 but its significance for neuropathic pain is unknown. Here we show that Nav1.7 expression in different sets of mouse sensory and sympathetic neurons underlies distinct types of pain sensation. Ablating Nav1.7 gene (SCN9A) expression in all sensory neurons using Advillin-Cre abolishes mechanical pain, inflammatory pain and reflex withdrawal responses to heat. In contrast, heat-evoked pain is retained when SCN9A is deleted only in Nav1.8-positive nociceptors. Surprisingly, responses to the hotplate test, as well as neuropathic pain, are unaffected when SCN9A is deleted in all sensory neurons. However, deleting SCN9A in both sensory and sympathetic neurons abolishes these pain sensations and recapitulates the pain-free phenotype seen in humans with SCN9A loss-of-function mutations. These observations demonstrate an important role for Nav1.7 in sympathetic neurons in neuropathic pain, and provide possible insights into the mechanisms that underlie gain-of-function Nav1.7-dependent pain conditions. Sodium channel Nav1.7 is essential for acute human pain but its role in chronic neuropathic pain is unclear. Minett and colleagues show that Nav1.7 expression specifically in sympathetic neurons, rather than sensory neurons, is required for the development of chronic neuropathic pain after injury.

[36] Nav1.7 target modulation and efficacy can be measured in nonhuman primate assays

  • Authors: R. Kraus, Fuqiang Zhao, Parul S. Pall, Dan Zhou, Joshua D. Vardigan et al.
  • Year: 2021
  • Venue: Science Translational Medicine
  • URL: https://www.semanticscholar.org/paper/cc0301d2639f8e88e8e01e626c42c64213ba5492
  • DOI: 10.1126/scitranslmed.aay1050
  • PMID: 34011626
  • Citations: 16
  • Influential citations: 3
  • Summary: It is demonstrated that it is possible to measure Nav1.7 target modulation in rhesus macaques and determine the plasma concentration required to produce a predetermined level of inhibition, and the calculated plasma concentration for preclinical efficacy could be used to guide human efficacious exposure estimates.

[37] Sodium channel protein alpha subunit genomics: building an integrated knowledgebase to translate between family members

  • Authors: Jacob Zieba, Amy M. Wilstermann, Angel HernΓ‘ndez, Jeremy W. Prokop
  • Year: 2023
  • Venue: Physiology
  • URL: https://www.semanticscholar.org/paper/45fd400431c4b3f7b80c5f0e89e51ffc681bfc37
  • DOI: 10.1152/physiol.2023.38.s1.5735085
  • Summary: An exciting and promising new tool for ortholog genomic mapping that can support clinical variant insights into physiological outcomes (genotype-to-phenotype relationship) is shown, which should be applied to other cellular ion channels and transporters.

[38] Rational Drug Design for Pain Medicine: A New Nav1.7 Inhibitor.

  • Authors: S. Waxman
  • Year: 2020
  • Venue: Anesthesiology
  • URL: https://www.semanticscholar.org/paper/795216560b786e51bf0a11eb7ce45ebcc7cdbe51
  • DOI: 10.1097/ALN.0000000000003447
  • PMID: 32788556
  • Citations: 1
  • Summary: This study used a powerful computer-aided strategy to virtually assess about 1.5 million compounds known to inhibit Nav1.7, and followed with molecular docking and molecular dynamic studies to demonstrate the power of rational drug design in this search.

[39] Navigating a new path to Nav1.7 for pain

  • Authors: Katie Kingwell
  • Year: 2021
  • Venue: Nature Reviews Drug Discovery
  • URL: https://www.semanticscholar.org/paper/38bb7bf2e4c4d1d3c59720041c80c3c3925112a9
  • DOI: 10.1038/d41573-021-00197-2
  • PMID: 34824392
  • Citations: 8
  • Summary: A small molecule is reported on, indirectly regulating Nav1.7 activity and producing analgesia in animal models of pain, which is part of a nine-member family of closely related Nav channels, many of which have important roles in cardiovascular, respiratory and neuronal function.

[40] Depolarized Inactivation Overcomes Impaired Activation to Produce DRG Neuron Hyperexcitability in a Nav1.7 Mutation in a Patient with Distal Limb Pain

  • Authors: Jianying Huang, Yang Yang, S. Dib-Hajj, Michael van Es, P. Zhao et al.
  • Year: 2014
  • Venue: The Journal of Neuroscience
  • URL: https://www.semanticscholar.org/paper/9555348eee17c1c9875d14c80f14658d6a28cf16
  • DOI: 10.1523/JNEUROSCI.2773-14.2014
  • PMID: 25209274
  • Citations: 19
  • Summary: Observations indicate that the dominant proexcitatory gating changes associated with this mutation, including depolarized steady-state fast, slow, and closed-state inactivation, faster repriming, and larger ramp currents, override the depolarizing shift of activation, to produce hyperexcitability and spontaneous firing of nociceptive neurons that underlie pain.

[41] The physiological function of different voltage-gated sodium channels in pain

  • Authors: G. Goodwin, S. McMahon
  • Year: 2021
  • Venue: Nature Reviews Neuroscience
  • URL: https://www.semanticscholar.org/paper/e046b846350f79d618cd87fe9f6b08a7ab919289
  • DOI: 10.1038/s41583-021-00444-w
  • PMID: 33782571
  • Citations: 145
  • Influential citations: 23
  • Summary: The contribution of individual channel subtypes in three key physiological processes necessary for transmission of sensory information to the CNS: transduction of stimuli at peripheral nerve terminals, axonal transmission of action potentials and neurotransmitter release from central terminals is reviewed.

[42] Long-lasting Analgesia via Targeted in vivo Epigenetic Repression of Nav1.7

  • Authors: Ana M. Moreno, G. F. Catroli, F. AlemΓ‘n, Andrew Pla, S. Woller et al.
  • Year: 2019
  • Venue: bioRxiv
  • URL: https://www.semanticscholar.org/paper/8a9ed4da69edb72a51df426a6ca14657e056e7da
  • DOI: 10.1101/711812
  • Citations: 5
  • Summary: This work investigates targeted epigenetic repression of NaV1.7 via genome engineering approaches based on clustered regularly interspaced short palindromic repeats (CRISPR)-dCas9 and zinc finger proteins as a potential treatment for chronic pain and demonstrates effective repression in lumbar dorsal root ganglia.

[43] NaV1.7 Splice Variant from Human Heart Compared with Neuronal hNaV1.7

  • Authors: A. Guia, Huimin Tao, V. Geft, V. Ferraro, Crystal Bantados et al.
  • Year: 2012
  • Venue: Unknown venue
  • URL: https://www.semanticscholar.org/paper/e5463a7cb31835e5e2548f5744cf2a8ea0852aca
  • DOI: 10.1016/j.bpj.2011.11.2885
  • Summary: Cloned and characterized a NaV1.7 subtype predominantly expressed in the human heart, a novel splice variant, missing one exon, may impact drug safety for this emerging family of analgesics.

[44] An SCN9A channelopathy causes congenital inability to experience pain

  • Authors: J. Cox, F. Reimann, A. Nicholas, G. Thornton, E. Roberts et al.
  • Year: 2006
  • Venue: Nature
  • URL: https://www.semanticscholar.org/paper/22790c3f02f934eecd6984f982ed80b6a4d9c42b
  • DOI: 10.1038/nature05413
  • PMID: 17167479
  • Citations: 1582
  • Influential citations: 85
  • Summary: The data suggest that SCN9A is an essential and non-redundant requirement for nociception in humans, and should stimulate the search for novel analgesics that selectively target this sodium channel subunit.

[45] Human sensory neurons exhibit cell-type-specific, pain-associated differences in intrinsic excitability and expression of SCN9A and SCN10A

  • Authors: Jiwon Yi, Lite Yang, A. Widman, Alexa Toliver, Zach Bertels et al.
  • Year: 2025
  • Venue: bioRxiv
  • URL: https://www.semanticscholar.org/paper/e7da59d13ca08303eff387e39add9967333bee83
  • DOI: 10.1101/2025.03.25.645367
  • PMID: 40196681
  • PMCID: 11974934
  • Citations: 6
  • Summary: This study uses Patch-seq recordings in hDRG to link electrical properties to transcriptionally defined cell types and finds that donor’s pain history is associated with E-type-specific differences in electrical properties, some of which may be associated with higher expression of voltage-gated sodium channels.

[46] SCN9A Epileptic Encephalopathy Mutations Display a Gain-of-function Phenotype and Distinct Sensitivity to Oxcarbazepine

  • Authors: Shuzhang Zhang, Zhiping Zhang, Yuan Shen, Yudan Zhu, Kun Du et al.
  • Year: 2019
  • Venue: Neuroscience Bulletin
  • URL: https://www.semanticscholar.org/paper/7d51cc2770bb0a0e3f8edf5ac913fc847ceb2a2c
  • DOI: 10.1007/s12264-019-00413-5
  • PMID: 31372899
  • Citations: 26
  • Summary: The results indicated that SCN9A mutants contribute to an increase in seizure, and show distinct sensitivity to OXC, one of the antiepileptic drugs targeting VGSCs.

[47] A sodium channel gene SCN9A polymorphism that increases nociceptor excitability

  • Authors: M. Estacion, T. Harty, Jin-Sung Choi, L. Tyrrell, S. Dib-Hajj et al.
  • Year: 2009
  • Venue: Annals of Neurology
  • URL: https://www.semanticscholar.org/paper/cf0174fcb83c9c65b6e736b2c10ee615dc8f8993
  • DOI: 10.1002/ana.21895
  • PMID: 20033988
  • Citations: 103
  • Influential citations: 7
  • Summary: The results suggest that polymorphisms in the NaV1.7 channel may influence susceptibility to pain and the R1150W allele depolarizes activation and increases the firing frequency in response to depolarization in DRG neurons in which this channel is normally expressed.

[48] Characterisation of Nav1.7 functional expression in rat dorsal root ganglia neurons by using an electrical field stimulation assay

  • Authors: A. Fouillet, J. Watson, A. D. Piekarz, Xiaofang Huang, Baolin Li et al.
  • Year: 2017
  • Venue: Molecular Pain
  • URL: https://www.semanticscholar.org/paper/62e034120f5e64f6d04ff4f04b05d240d9088e0e
  • DOI: 10.1177/1744806917745179
  • PMID: 29166836
  • PMCID: 5731621
  • Citations: 10
  • Summary: The findings presented here point to a selective effect of Protoxin-II in sensory neurons and helped to validate a new method for investigating and comparing Nav1.7 pharmacology in sensory versus central nervous system neurons, which will provide the basis for the development of higher throughput models for enabling pain-relevant phenotypic screening.

[49] Painful and painless mutations of SCN9A and SCN11A voltage-gated sodium channels

  • Authors: M. Baker, Mohammed A. Nassar
  • Year: 2020
  • Venue: Pflugers Archiv
  • URL: https://www.semanticscholar.org/paper/8740391c40ee522e75fecf7f4ff7842faee08d76
  • DOI: 10.1007/s00424-020-02419-9
  • PMID: 32601768
  • PMCID: 7351857
  • Citations: 49
  • Influential citations: 8
  • Summary: The critical roles these channels play in pain along with their low expression in the CNS and heart muscle suggest they are valid targets for novel analgesic drugs.
  • Authors: S. Waxman, I. Merkies, M. Gerrits, S. Dib-Hajj, G. Lauria et al.
  • Year: 2014
  • Venue: The Lancet. Neurology
  • URL: https://www.semanticscholar.org/paper/69b6c5ff35590fca02c87742f8450dd4bc81d054
  • DOI: 10.1016/S1474-4422(14)70150-4
  • PMID: 25316021
  • Citations: 164
  • Influential citations: 8
  • Summary: Human studies have firmly implicated voltage-gated sodium channels in human pain disorders, and targeted and massively parallel genomic sequencing is beginning to be used in clinical practice to determine which sodium channel variants are involved.

[51] Unraveling the Tapestry of Pain: A Comprehensive Review of Ethnic Variations, Cultural Influences, and Physiological Mechanisms in Pain Management and Perception

  • Authors: Neelay Shah, Rida-e-Maria Qazi, Xiang-Ping Chu
  • Year: 2024
  • Venue: Cureus
  • URL: https://www.semanticscholar.org/paper/ea27415543698cf12fd0fd0a05e31eb66c8e1e6c
  • DOI: 10.7759/cureus.60692
  • PMID: 38899250
  • PMCID: 11186588
  • Citations: 9
  • Summary: By acknowledging diverse influences on pain experiences, clinicians can provide personalized care, dismantle systemic barriers, and contribute to closing knowledge gaps, impacting individual and public health, well-being, and overall quality of life.
  • Evidence snippets:
  • Snippet 1 (score: 0.651)
    > Voltage-gated sodium channels, such as Nav1.7,Nav1.8, and Nav1.9, are primarily found in sensory neurons involved in perceiving pain [34].These channels play a significant role in initiating and spreading action potentials, which help transmit pain signals from peripheral tissues to the central nervous system [34].Nav1.7 (SCN9A): Nav1.7, also known as SCN9A, is a voltage-gated sodium channel predominantly found in sensory neurons responsible for the perception of pain [11].This sodium channel is of paramount importance in the field of pain research due to its central role in nociception.Mutations in the SCN9A gene that encodes Nav1.7 have been extensively associated with various pain disorders, emphasizing its critical role in pain perception and management [35].These genetic variations can lead to either a loss of function, resulting in congenital insensitivity to pain, or a gain of function, causing inherited erythromelalgia or paroxysmal extreme pain disorder.Nav1.7 is crucial for initiating and propagating action potentials within sensory neurons, making it a key player in transmitting pain signals from peripheral tissues to the central nervous system [36].Its function is highly specialized, allowing it to sense and transmit pain signals with remarkable precision.The mechanism by which it accomplishes this involves a fast and selective sodium ion conductance, which contributes to the depolarization of the neuron's membrane, ultimately leading to the firing of action potentials.Understanding Nav1.7's functions and genetic associations is not only essential for basic neuroscience research but also holds promise for the development of potential therapeutic approaches to manage pain effectively.Researchers and pharmaceutical companies have been actively exploring drugs that target these sodium channels, including Nav1.7, as potential treatments for various chronic pain conditions [37].The hope is that by modulating the activity of Nav1.7, it may be possible to provide relief to those who suffer from debilitating chronic pain, thereby significantly improving their quality of life [38].

[52] Ectopic expression of Nav1.7 in spinal dorsal horn neurons induced by NGF contributes to neuropathic pain in a mouse spinal cord injury model

  • Authors: Yan Fu, Liting Sun, Fengting Zhu, W. Xia, Ting Wen et al.
  • Year: 2023
  • Venue: Frontiers in Molecular Neuroscience
  • URL: https://www.semanticscholar.org/paper/ce9d2360e3158ffbe8439ecc4c9a832b73c4554e
  • DOI: 10.3389/fnmol.2023.1091096
  • PMID: 36937049
  • PMCID: 10020601
  • Citations: 12
  • Influential citations: 1
  • Summary: The findings showed that the upregulation of Nav1.7 was induced by SCI in both SDH and DRG neurons through increased expression of NGF/JUN, and the inhibition of Nav 1.7 in both peripheral and spinal neurons alleviated mechanical pain in SCI mice, suggesting that BBB permeable Nav1-7 blockers might relieve NP in patients with SCI and that blocking the up regulation of Nav2.7-targeted RNA drugs could be a strategy for therapy
  • Evidence snippets:
  • Snippet 1 (score: 0.625)
    > Moreover, Nav1.8 gainof-function mutations were found in patients with painful smallfiber neuropathy or with lower mechanical pain sensitivity (Faber et al., 2012;Duan et al., 2016;Han et al., 2018).
    > Nav1.7 (SCN9A, also named PN1), another member of VGSCs, was originally found in mice by Beckers et al. (1996) and Kozak and Sangameswaran (1996) and found to be principally expressed in peripheral neurons (Sangameswaran et al., 1997;Toledo-Aral et al., 1997). Lai et al. (2000) reported that knocking down the expression of Nav1.7 using Scn9a antisense in DRG neurons alleviated neuropathic pain. Following this, it was found that gain-of-function mutations of SCN9A caused inherited erythromelalgia, idiopathic small-fiber neuropathies, and spontaneous pain (Cummins et al., 2004;Yang et al., 2004;Faber et al., 2012;Xue et al., 2022). Knockout of Scn9a in DRG neurons of mice attenuated mechanical pain, inflammatory pain, and certain types of heat pain (Nassar et al., 2004;Minett et al., 2012), and the loss of function mutation of SCN9A leads to congenital insensitivity to pain in humans (Cox et al., 2006).
    > Given the strong clinical relevance of Nav1.7 and Nav1.8 in neuropathic pain, second-generation sodium channel blockers selectively targeting Nav1.7 or Nav1.8 have been developed since 2009, but none of them have yet achieved efficient effects in the attenuation of neuropathic pain in clinical trials. We previously found that Nav1.7 and Nav1.8 were upregulated in SDH neurons of peripheral nerve-injured mice and contributed to NP (Sun et al., 2021). It is unknown whether Nav1.7 and Nav1.8 is also ectopically expressed in SDH neurons to participate in NP following SCI.

[53] Mutations in Sodium Channel Gene SCN9A and the Pain Perception Disorders

  • Authors: Danica Z. MarkoviΔ‡, R. Jankovic, I. VeselinoviΔ‡
  • Year: 2015
  • Venue: Unknown venue
  • URL: https://www.semanticscholar.org/paper/ec0c22a9315564728808a09b247777dd66622989
  • DOI: 10.1155/2015/562378
  • Citations: 10
  • Summary: Further research of the SCN9A gene polymorphism influence on pain sensitivity is essential for the understanding of the pathophysiology of pain and the development of the appropriate targeted pain treatment.
  • Evidence snippets:
  • Snippet 1 (score: 0.584)
    > Voltage-gated sodium channels (NaV) play a crucial role in development and propagation of action potentials in neurons and muscle cells. NaV1.7 channels take a special place in modern science since it is believed that they contribute to nerve hyperexcitability. Mutations of the gene SCN9A, which codes the Ξ± subunit of NaV1.7 channels, are associated with pain perception disorders (primary erythermalgia, congenital analgesia, and paroxysmal pain disorder). It is considered that the SCN9A gene mutations may cause variations in sensitivity to pain, from complete insensitivity to extreme sensitivity. Further research of the SCN9A gene polymorphism influence on pain sensitivity is essential for the understanding of the pathophysiology of pain and the development of the appropriate targeted pain treatment.
  • Snippet 2 (score: 0.567)
    > Channels NaV1.7 are also called the voltage-gated sodium channel type IV subunit. They are coded by the SCN9A gene and are highly expressed in sensory neurons of the dorsal roots, trigeminal ganglion, and sympathetic neurons ganglia, mainly in the nociceptors [2]. They are built out of 1977 amino acids (approximately 225 kDa) [6].
    > Immunohistochemical studies have shown that NaV1.7 is also present on the distal neurite ends, close to the impulse trigger zone. These channels show the possibility of depolarization even on minor stimuli and their biophysical function is to conduct stimuli which are below threshold. They are characterized by slow inactivation and slow recovery from inactivation. This allows them to answer to small depolarization stimuli and to amplify generation potentials on nerve endings. Scientists believe that the role of NaV1.7 is to contribute to nerve hyperexcitability [2,[6][7][8].

[54] Novel Mutations Mapping to the Fourth Sodium Channel Domain of Nav1.7 Result in Variable Clinical Manifestations of Primary Erythromelalgia

  • Authors: R. Cregg, B. Laguda, R. Werdehausen, J. Cox, J. Linley et al.
  • Year: 2013
  • Venue: Neuromolecular Medicine
  • URL: https://www.semanticscholar.org/paper/532f369cd21ebc07f75ee43ef00113f9327b7762
  • DOI: 10.1007/s12017-012-8216-8
  • PMID: 23292638
  • PMCID: 3650253
  • Citations: 62
  • Influential citations: 3
  • Summary: It is demonstrated that mutations encoding for DIV of Nav1.7 can not only be linked to congenital insensitivity to pain or paroxysmal extreme pain disorder but can also be causative of PEM, if voltage dependency of channel activation is affected.
  • Evidence snippets:
  • Snippet 1 (score: 0.578)
    > Recent studies have confirmed a pivotal role for the Nav1.7 voltage-gated sodium channel in human familial gainof-function (Yang et al. 2004;Fertleman et al. 2006) and loss-of-function pain syndromes (Cox et al. 2006). Nav1.7, encoded by SCN9A, is preferentially expressed in nociceptive dorsal root ganglia (DRG) and sympathetic ganglia (Sangameswaran et al. 1997;Toledo-Aral et al. 1997) and is thought to serve a threshold triggering function, enabling depolarizing stimuli to elicit action potential propagation (Cummins et al. 1998;Rush et al. 2007). By identifying patients with novel mutations in SCN9A and analyzing the biophysical properties of the mutant Nav1.7 channels, we aim to provide insights into how this important channel functions and contributes to neuronal action potential firing, potentially suggesting ways in which its function could be normalized in affected individuals.
    > Recessive loss-of-function mutations in SCN9A result in congenital insensitivity to pain (CIP), whereas gainof-function, dominant mutations lead to sensory neuronal hyperexcitability and the development of painful phenotypes described as inherited or primary erythromelalgia (PEM or IEM) (Yang et al. 2004;Dib-Hajj et al. 2005) and paroxysmal extreme pain disorder (PEPD) (Fertleman et al. 2006;Choi et al. 2011). PEM is classically described as a peripheral, bilateral disorder associated with erythema and severe burning pain of affected extremities that is triggered by stress, exhaustion and warmth and often relieved by cooling of the affected sites (Segerdahl et al. 2012). Clinical onset has been reported previously as within 1 year after birth in some cases, while in the majority of cases, symptoms of PEM develop within the first decade of life (Fischer and Waxman 2010).

[55] Novel Mutations Mapping to the Fourth Sodium Channel Domain of Nav1.7 Result in Variable Clinical Manifestations of Primary Erythromelalgia

  • Authors: R. Cregg, B. Laguda, R. Werdehausen, J. Cox, J. Linley et al.
  • Year: 2013
  • Venue: NeuroMolecular Medicine
  • URL: https://www.semanticscholar.org/paper/5c4126ab76eaea90fb5a812174236881212f2db9
  • DOI: 10.1007/s12017-012-8216-8
  • Citations: 1
  • Summary: It is demonstrated that mutations encoding for DIV of Nav1.7 can not only be linked to congenital insensitivity to pain or paroxysmal extreme pain disorder but can also be causative of PEM, if voltage dependency of channel activation is affected.
  • Evidence snippets:
  • Snippet 1 (score: 0.578)
    > Recent studies have confirmed a pivotal role for the Nav1.7 voltage-gated sodium channel in human familial gainof-function (Yang et al. 2004;Fertleman et al. 2006) and loss-of-function pain syndromes (Cox et al. 2006). Nav1.7, encoded by SCN9A, is preferentially expressed in nociceptive dorsal root ganglia (DRG) and sympathetic ganglia (Sangameswaran et al. 1997;Toledo-Aral et al. 1997) and is thought to serve a threshold triggering function, enabling depolarizing stimuli to elicit action potential propagation (Cummins et al. 1998;Rush et al. 2007). By identifying patients with novel mutations in SCN9A and analyzing the biophysical properties of the mutant Nav1.7 channels, we aim to provide insights into how this important channel functions and contributes to neuronal action potential firing, potentially suggesting ways in which its function could be normalized in affected individuals.
    > Recessive loss-of-function mutations in SCN9A result in congenital insensitivity to pain (CIP), whereas gainof-function, dominant mutations lead to sensory neuronal hyperexcitability and the development of painful phenotypes described as inherited or primary erythromelalgia (PEM or IEM) (Yang et al. 2004;Dib-Hajj et al. 2005) and paroxysmal extreme pain disorder (PEPD) (Fertleman et al. 2006;Choi et al. 2011). PEM is classically described as a peripheral, bilateral disorder associated with erythema and severe burning pain of affected extremities that is triggered by stress, exhaustion and warmth and often relieved by cooling of the affected sites (Segerdahl et al. 2012). Clinical onset has been reported previously as within 1 year after birth in some cases, while in the majority of cases, symptoms of PEM develop within the first decade of life (Fischer and Waxman 2010).

[56] Matrix Metalloproteinase (MMP) Proteolysis of the Extracellular Loop of Voltage-gated Sodium Channels and Potential Alterations in Pain Signaling*

  • Authors: A. Remacle, Sonu Kumar, K. Motamedchaboki, P. Cieplak, Swathi K. Hullugundi et al.
  • Year: 2015
  • Venue: The Journal of Biological Chemistry
  • URL: https://www.semanticscholar.org/paper/7dacb95f8fcb16c39e74455c6b08375868e827ec
  • DOI: 10.1074/jbc.C115.671107
  • PMID: 26283785
  • Citations: 15
  • Influential citations: 1
  • Summary: It is likely that the aberrantly accelerated MMP-9 proteolysis during neurogenesis is a biochemical rational for the functional inactivation in Nav1.7 and that the enhanced cleavage of the Nav 1.7-R907Q mutant is a cause of CIP in the Bedouin family.
  • Evidence snippets:
  • Snippet 1 (score: 0.572)
    > In human genome, the SCN9A gene codes for the ␣-subunit of the voltage-gated Nav1.7 sodium channel, the main pain signaling channel that is expressed in peripheral pain-sensing neurons (10). A number of gain-of-function mutations in SCN9A result in severe episodic neuropathic pain and the three distinct disorders known in humans such as paroxysmal extreme pain disorder, inherited/primary erythromelalgia, and small-fiber neurop-athy (reviewed in Ref. 7). In turn, multiple recently identified biallelic loss-of-function truncating mutations in SCN9A lead to either the dysfunctional Nav1.7 protein or, probably, to no protein being produced, and, consequently, to a disorder named autosomal recessive CIP (1,3,11,12,30). CIP patients are incapable of perceiving any form of pain, in any part of the body, but other modalities are normal. It is not entirely surprising that some of affected individuals make a living as street performers (5).
    > A non-truncating Nav1.7-R896Q mutation, however, has been found in a consanguineous Israeli Bedouin family (6). So far, this is the only missense mutation in Nav1.7 that causes CIP. This missense mutation was mapped to the exposed extracellular unstructured region (the pore region) linking the S5-S6 transmembrane segments in the DII domain of the human Nav1.7. The Nav1.7 channels exist in multiple, if not all, verte-FIGURE 2. Mass spectrometry analysis of MMP-9 proteolysis of the Nav1.7 peptides. A, MALDI monoisotopic MS spectra of the peptides. The wild-type TLPRWHMNDF (1316.48 Da), mutant TLPQWHMNDF (the CIP R907Q mutation is underlined; 1288.43

[57] Congenital Insensitivity to Pain: Novel SCN9A Missense and In-Frame Deletion Mutations

  • Authors: J. J. Cox, Jony Sheynin, Z. Shorer, F. Reimann, A. Nicholas et al.
  • Year: 2010
  • Venue: Human Mutation
  • URL: https://www.semanticscholar.org/paper/bb8cad2216b64a1a13ab4e11881330e8b543d4f5
  • DOI: 10.1002/humu.21325
  • PMID: 20635406
  • PMCID: 2966863
  • Citations: 127
  • Influential citations: 5
  • Summary: This study has identified critical amino acids needed for the normal subcellular localization and function of Nav1.7 sodium channel, a protein highly expressed in pain‐sensing neurons, and describes the identification and functional characterization of two novel non‐truncating mutations in families with CIP.
  • Evidence snippets:
  • Snippet 1 (score: 0.571)
    > SCN9Aencodes the voltage‐gated sodium channel Nav1.7, a protein highly expressed in pain‐sensing neurons. Mutations in SCN9A cause three human pain disorders: bi‐allelic loss of function mutations result in Channelopathy‐associated Insensitivity to Pain (CIP), whereas activating mutations cause severe episodic pain in Paroxysmal Extreme Pain Disorder (PEPD) and Primary Erythermalgia (PE). To date, all mutations in SCN9A that cause a complete inability to experience pain are protein truncating and presumably lead to no protein being produced. Here, we describe the identification and functional characterization of two novel non‐truncating mutations in families with CIP: a homozygously‐inherited missense mutation found in a consanguineous Israeli Bedouin family (Nav1.7‐R896Q) and a five amino acid in‐frame deletion found in a sporadic compound heterozygote (Nav1.7‐ΔR1370‐L1374). Both of these mutations map to the pore region of the Nav1.7 sodium channel. Using transient transfection of PC12 cells we found a significant reduction in membrane localization of the mutant protein compared to the wild type. Furthermore, voltage clamp experiments of mutant‐transfected HEK293 cells show a complete loss of function of the sodium channel, consistent with the absence of pain phenotype. In summary, this study has identified critical amino acids needed for the normal subcellular localization and function of Nav1.7. Β© 2010 Wiley‐Liss, Inc.

[58] Case Report: Mutant SCN9A Susceptible to Charcot Neuroarthropathy in a Patient With Congenital Insensitivity to Pain

  • Authors: Xiaohui Xie, Jian-guang Tang, Zhonghua Liu, Shuijiao Peng, Zhuang-zhuang Yuan et al.
  • Year: 2021
  • Venue: Frontiers in Neuroscience
  • URL: https://www.semanticscholar.org/paper/8ee37d0088b955f30a390064c9d87d77de6fc87f
  • DOI: 10.3389/fnins.2021.697167
  • PMID: 34335171
  • PMCID: 8317969
  • Summary: A patient with CIP from a consanguineous family susceptible to Charcot neuroarthropathy with a novel SCN9A mutation is reported, which is conducive to understanding the critical amino acids for maintaining the function of Nav1.7.
  • Evidence snippets:
  • Snippet 1 (score: 0.569)
    > Conversely, loss-of-function mutations in SCN9A contribute to CIP (Klein et al., 2013). To date, more than 100 mutations in SCN9A have been reported, but only 42 have been associated with CIP (Baker and Nassar, 2020; Supplementary Table 1 and Figure 2A). Among the SCN9A mutations identified in CIP patients, most were non-sense, frameshift, or splicing mutations, all of which produced non-functional and truncated Nav1.7 proteins; however, we identified a novel homozygous missense mutation (c.4015T > C, p. Cys1339Arg) in SCN9A in a patient with CIP, which abolished the current density and the Nav1.7 function. The variant site was localized in exon 21 of SCN9A, and the protein change was located in the extracellular linker joining S5 and S6 of domain III, which has not been reported previously (Figure 2). S5-P, P loop, and P-S6 are vital for the selective permeation of sodium ions (Catterall, 2017). Residue Cys1339 mapped to the S5-P, domain III of Nav1.7, is highly conserved among different species (Figure 1I) and plays a role in filtering sodium ions.
    > Loss-of-function mutations in the VGSC Nav1.7 cause CIP in human, making Nav1.7 an important target for novel analgesics. For humans, in most patients with CIP, the perception of nonnoxious touch and warmth is not affected, whereas the perception of noxious heat, pressure, and injury pain is completely lost. Therefore, loss of Nav1.7 did not lead to lethality or any disability (Zufall et al., 2012). Selective Nav1.7 channel blockers, as potential painkillers with improved safety and reduced unwanted side effects, will be increasingly favored by doctors and patients.

[59] Novel SCN9A missense mutations contribute to congenital insensitivity to pain: Unexpected correlation between electrophysiological characterization and clinical phenotype

  • Authors: Jiaoli Sun, Lulu Li, Luyao Yang, Guangyou Duan, Tingbin Ma et al.
  • Year: 2020
  • Venue: Molecular Pain
  • URL: https://www.semanticscholar.org/paper/e8e352d50a9814a771c5713a7d609a6396ef1271
  • DOI: 10.1177/1744806920923881
  • PMID: 32420800
  • PMCID: 7235659
  • Citations: 19
  • Influential citations: 2
  • Summary: It is revealed that mutations in Nav1.7 in this congenital insensitivity to pain patient still retained partial channel function, but the patient showed completely painlessness, the unexpected genotypic-phenotypic relationship of SCN9A mutations in the authors' patient may challenge the previous findings β€œNav 1.7 total loss-of-function leads to painlessness.”
  • Evidence snippets:
  • Snippet 1 (score: 0.569)
    > Congenital insensitivity to pain (OMIM 243000) is an extremely rare disorder caused by loss-of-function mutations in SCN9A encoding Nav1.7. Although the SCN9A mutations and phenotypes of painlessness and anosmia/hyposmia in patients are previously well documented, the complex relationship between genotype and phenotype of congenital insensitivity to pain remains unclear. Here, we report a congenital insensitivity to pain patient with novel SCN9A mutations. Functional significance of novel SCN9A mutations was assessed in HEK293 cells expressing Nav1.7, the results showed that p.Arg99His significantly decreased current density and reduced total Nav1.7 protein levels, whereas p.Trp917Gly almost abolished Nav1.7 sodium current without affecting its protein expression. These revealed that mutations in Nav1.7 in this congenital insensitivity to pain patient still retained partial channel function, but the patient showed completely painlessness, the unexpected genotypic-phenotypic relationship of SCN9A mutations in our patient may challenge the previous findings β€œNav1.7 total loss-of-function leads to painlessness.” Additionally, these findings are helpful for understanding the critical amino acid for maintaining function of Nav1.7, thus contributing to the development of Nav1.7-targeted analgesics.

[60] Primary erythromelalgia: a review

  • Authors: Zhaoli Tang, Zhao Chen, B. Tang, Hong Jiang
  • Year: 2015
  • Venue: Orphanet Journal of Rare Diseases
  • URL: https://www.semanticscholar.org/paper/d75bcc302b60d400a834b514234a82d1a64ffe14
  • DOI: 10.1186/s13023-015-0347-1
  • PMID: 26419464
  • PMCID: 4589109
  • Citations: 94
  • Influential citations: 5
  • Summary: A genotype-channelopathy-phenotype correlation network underlying PE etiology is proposed which could provide guidance for future therapeutics and may help in the development of new drugs for PE.
  • Evidence snippets:
  • Snippet 1 (score: 0.561)
    > Since the identification of SCN9A, more than 20 PE mutations have been reported. Researches into PE have shed light upon the pivotal role of voltage-gated sodium channels in sensory neurons' physical properties and have elucidated the underlying pathogenic mechanisms caused by SCN9A-linked Nav1.7 mutations. Electrophysiology studies of mutant Nav1.7 channels have presented us a complex yet intriguing network of genotype-channelopathy-phenotype correlation, through looking into which more aspects of the nociception pathways can be clarified. Studies on CIP caused by lossof-function mutations in Nav1.7 and Nav1.7 knock-out mice models suggest that Nav1.7 is an ideal target for novel pain-relieving drugs. Furthermore, several novel Nav1.7-selectvie agents have showed satisfactory clinical efficacy. In order to delineate an overall picture of this rare and intricate pain disorder, several questions remain to be answered such as whether molecular modulators or non-coding regions of SCN9A also contribute to the mechanisms of PE? What explains for the disproportionate relationship between the level of channelopathies and phenotypes? Whether Nav1.7-specific blockers have therapeutic value in all gain-of-function SCN9A mutations? What remains elusive may be the keystone to bridge the gap between basic researches to clinical treatments for PE.
  • Snippet 2 (score: 0.527)
    > Researchers have observed an interesting dual manifestation of PE, the divergent functional effects of SCN9A mutations on sensory neurons and sympathetic neurons. Mutant Nav1.7 channels render DRG neurons hyperexcitable but increase action potential threshold in sympathetic neurons [78]. Disparate to Nav1.7, Nav1.8 channels have a more depolarized voltage dependence of activation (βˆ’16 to -21 mV) and primarily underlie the action potential upstrokes [64]. Studies have shown that Nav1.7 channels are expressed at a high level in both sensory neurons and sympathetic neurons [79], while Nav1.8 channels are mostly expressed in sensory neurons [68]. Additionally, when co-expressed with L858H mutant channel in supra cervical ganglion (SCG) neurons, Nav1.8 tend to protect against the hyperexcitability caused by Nav1.7 mutant channels [68]. Thus, different cell backgrounds, in this case the expression levels of Nav1.8, might have impacts that correlate with direct effects of Nav1.7 mutations on neuron cells.

[61] Possible Anti-Pain Vaccines: A Narrative Review of Emerging Strategies and Clinical Prospects

  • Authors: Y. Martins, Luciana Pereira de-Sousa, Peyton J. Murin, Hamed Sadeghipour, C. Daniel-Ribeiro
  • Year: 2025
  • Venue: Vaccines
  • URL: https://www.semanticscholar.org/paper/f078eaca7fd4a5fccc19f79c62738aff54c517e1
  • DOI: 10.3390/vaccines13090909
  • PMID: 41012116
  • PMCID: 12474396
  • Summary: Current knowledge on therapeutic vaccines for pain is summarized, the immunological and technological advances in the field are discussed, and future directions are outlined.
  • Evidence snippets:
  • Snippet 1 (score: 0.558)
    > Voltage-Gated sodium channels (Nav) are involved in the generation and propagation of electrochemical impulses along nociceptors [52]. Nine Nav subtypes have been described, with Nav1.7, Nav1.8, and Nav1.9 being almost exclusively found in peripheral neurons. Nav1.7 is encoded by SCN9A. It is often called the "pain channel" because human genetic studies have shown it to be absolutely crucial for pain signaling, as loss-of-function mutations in SCN9A cause congenital insensitivity to pain, whereas gain-of-function mutations cause extreme pain disorders [53]. Nav1.7 is localized at nociceptor nerve endings and axons, where it amplifies depolarizations to initiate action potentials. Accordingly, Nav1.7 emerged as a key target for analgesic drug development, with the ultimate goal of creating a therapy that replicates congenital insensitivity to pain without causing additional side effects. Despite intense efforts over 15+ years, no selective small-molecule Nav1.7 blocker has yet succeeded clinically [54]. Many compounds showed good in vitro block but minimal analgesia in humans, potentially due to compensatory mechanisms or insufficient in vivo blockade. An immunotherapeutic approach to Nav1.7 could involve raising antibodies that bind the channel and inhibit its function. This concept is supported by precedent, as biological toxins such as tetrodotoxin (TTX) and certain peptide toxins are known to bind Nav channels with high affinity and specificity [55]. Researchers have also developed monoclonal antibodies and even single-domain antibodies (nanobodies) that target Nav1.7's voltage-sensor domains and can allosterically inhibit channel opening [50,56]. One such monoclonal antibody was reported to effectively reduce pain in rodent models by selective Nav1.7 blockade, though translating this to humans is complicated by the need for the antibody to access neuronal membranes and by potential off-target binding to other Nav channels [57].

[62] Pain triangle phenomenon in possible association with SCN9A: A case report

  • Authors: M. Sopacua, J. Hoeijmakers, A. J. van der Kooi, I. Merkies, C. Faber
  • Year: 2022
  • Venue: Molecular Genetics & Genomic Medicine
  • URL: https://www.semanticscholar.org/paper/5c8ba493ef54515a856f651ab3cba1aaff10b6c2
  • DOI: 10.1002/mgg3.2026
  • PMID: 36114697
  • PMCID: 9544215
  • Citations: 2
  • Influential citations: 1
  • Summary: Sodium channel Nav1.7, encoded by the SCN9A‐gene, has been of special interest in the last decades because missense gain‐of‐function mutations have been linked to a spectrum of neuropathic pain conditions, including inherited erythermalgia, paroxysmal extreme pain disorder (PEPD), and small fiber neuropathy (SFN).
  • Evidence snippets:
  • Snippet 1 (score: 0.550)
    > Voltage‐gated sodium channels are essential for the generation and conduction of electrical impulses in excitable cells. Sodium channel Nav1.7, encoded by the SCN9A‐gene, has been of special interest in the last decades because missense gain‐of‐function mutations have been linked to a spectrum of neuropathic pain conditions, including inherited erythermalgia (IEM), paroxysmal extreme pain disorder (PEPD), and small fiber neuropathy (SFN).

[63] Analgesia effect of lentivirus-siSCN9A infected neurons in vincristine induced neuropathic pain rats

  • Authors: Baojun Fu, Rong Zhu
  • Year: 2021
  • Venue: Bioengineered
  • URL: https://www.semanticscholar.org/paper/ef097b8a3870fdc2e129147abcc649a005e91291
  • DOI: 10.1080/21655979.2021.2008696
  • PMID: 34927536
  • PMCID: 8810170
  • Citations: 1
  • Summary: It was concluded that the LV-siSCN9A infected neurons could play an analgesic role by down-regulating Nav1.7 expression induced by VCR in NP model.
  • Evidence snippets:
  • Snippet 1 (score: 0.545)
    > Nva1.6, and Nav1.7) [40]. Among them, the Nav1.7 channel may play a major role in the generation of ectopic discharge [41]. SCN9A was located on chromosome 2. The voltage-gated sodium channel Nav1.7, which encoded tetrodotoxin-sensitive, was overexpressed in sympathetic ganglia and peripheral neurons. SCN9A gene variation could cause painrelated diseases [42,43]. Recently, more and more evidence has shown that mutations in the SCN9A gene are closely related to abnormal pain. Among them, paroxysmal severe pain and primary erythematous limb pain are all due to misintentional mutations in certain positions of the human SCN9A gene sequence encoding Nav1.7 protein [44,45]. DRG neuron Nav1.7 has a high expression in the inflammatory pain model of rats 46), and the SCN9A gene mutation rat of DRG neuron has significantly reduced responsiveness to inflammatory pain [4748]. The cell types Nav1.7 expressed on DRG neurons were further observed by immunofluorescence double standard method. The mRNA and protein expression levels of Nav1.7 in each group was detected by Western-blot method and quantitative PCR, and the expression of CGRP in the dorsal horn of rat spinal cord was detected by immunofluorescence. It was found that compared with the control group, the Nav1.7 mRNA and protein expression level of rats in the model group was significantly increased (P < 0.05). Compared with LV-SC group, the Nav1.7 mRNA and protein expression level of LV-siSCN9A group was significantly decreased [P < 0.05), and the CGRP expression of spinal dorsal horn was significantly decreased. It indicated that the high expression of Nav1. expression of NLRP3, ASIC3 and CaMK2Ξ± in the spinal cord of rats with pathological pain, so as to achieve the effect of reducing NP in rats. The experiment was in line with expectations.

Notes

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Falcon

(SCN9A-deep-research-falcon.md)
this with annotations you find in gene/protein databases, but these can be outdated or inaccurate. Falcon Edison Scientific Literature 45 citations 2 artifacts 2026-06-16T05:58:51.672376

The research report should be a detailed narrative explaining the function, biological processes, and localization of the gene product. Citations should be given for all claims.

You should prioritize authoritative reviews and primary scientific literature when conducting research. You can supplement
this with annotations you find in gene/protein databases, but these can be outdated or inaccurate.

We are specifically interested in the primary function of the gene - for enzymes, what reaction is catalyzed, and what is the substrate specificity? For transporters, what is the substrate? For structural proteins or adapters, what is the broader structural role? For signaling molecules, what is the role in the pathway.

We are interested in where in or outside the cell the gene product carries out its function.

We are also interested in the signaling or biochemical pathways in which the gene functions. We are less interested in broad pleiotropic effects, except where these elucidate the precise role.

Include evidence where possible. We are interested in both experimental evidence as well as inference from structure, evolution, or bioinformatic analysis. Precise studies should be prioritized over high-throughput, where available.

Comprehensive Research Report: Human SCN9A / NaV1.7 (UniProt Q15858) β€” Functional Annotation, Mechanisms, and Translational Status

0) Identity verification (critical)

The target protein is the human voltage‑gated sodium channel NaV1.7 α‑subunit, encoded by SCN9A, and is explicitly linked to UniProt accession Q15858 in a biochemical study analyzing the full-length channel (β€œfull‑length NaV1.7 (SCN9A, Uniprot Q15858)”). (wright2023thecterminalof pages 2-3)

1) Key concepts and current understanding

1.1 Core molecular function (what the gene product does)

NaV1.7 is a voltage-gated sodium (Na+) channel that supports membrane excitability by permitting selective Na+ flux during action potentials; in nociceptors it is strongly implicated in determining excitability near threshold and thereby controlling pain signaling. (toffano2020computationalpipelineto pages 1-2, meents2019theroleof pages 1-2)

Selectivity/substrate specificity: NaV1.7 is selective for Na+ and shares the canonical NaV architecture and DEKA selectivity filter (Asp-Glu-Lys-Ala across DI–DIV) described for eukaryotic NaV Ξ± subunits. (toffano2020computationalpipelineto pages 1-2)

1.2 Structural definitions (domain architecture)

The NaV Ξ±-subunit is a single ~2,000 amino‑acid polypeptide organized into four homologous domains (DI–DIV); each domain contains six transmembrane helices (S1–S6). S1–S4 form the voltage-sensing domain (VSD) and S5–S6 plus the extracellular P-loop form the pore domain and selectivity filter. (toffano2020computationalpipelineto pages 1-2, wood2025sensoryneuronsodium pages 1-2)

1.3 Cellular and tissue localization (where it acts)

NaV1.7 is a plasma-membrane channel enriched in nociceptive neurons, with high expression reported in dorsal root ganglia (DRG), trigeminal ganglia, and sympathetic gangliaβ€”an expression pattern central to its role in pain pathways. (dormer2023areviewof pages 8-9)

1.4 Human genetic validation (why SCN9A is a flagship pain target)

SCN9A is among the strongest β€œhuman-validated” targets in pain biology:
- Gain-of-function (GOF) variants cause painful channelopathies (e.g., inherited erythromelalgia, paroxysmal extreme pain disorder, and subsets of small fiber neuropathy). (baker2020painfulandpainless pages 1-2, meents2019theroleof pages 1-2)
- Loss-of-function (LOF) variants cause congenital insensitivity to pain. (baker2020painfulandpainless pages 1-2, meents2019theroleof pages 1-2)

These genotype–phenotype links provide unusually direct causal evidence connecting a single ion channel to a clinically meaningful sensory modality. (baker2020painfulandpainless pages 1-2, meents2019theroleof pages 1-2)

2) Recent developments (prioritizing 2023–2024)

2.1 2023: Cryo‑EM β€œstructural pharmacology” map of human NaV1.7 drug binding sites

A major 2023 advance was the publication of high-resolution cryo‑EM structures of human NaV1.7 bound to multiple clinically used drugs and investigational compounds (2.6–3.2 Γ…). This work mapped multiple druggable binding sites including:
- a site beneath the intracellular gate (β€œsite BIG”) accommodating carbamazepine, bupivacaine, and lacosamide,
- binding in pore fenestrations (e.g., vixotrigine in the IV–I fenestration; vinpocetine and hardwickiic acid at the III–IV fenestration),
- an unexpected second lacosamide molecule plugging into the selectivity filter from the central cavity. (wu2023structuralmappingof pages 1-2)

A figure from this study provides a consolidated schematic of the mapped druggable sites and is useful for functional annotation because it links channel anatomy directly to chemical mechanisms of inhibition/modulation. (wu2023structuralmappingof media a264241d)

2.2 2023: Accessory protein requirement for toxin-mediated NaV1.7 modulation (TMEM233/dispanins)

A 2023 Nature Communications study demonstrated that voltage-gated sodium channels can behave as multiprotein signaling complexes, and identified TMEM233 (a dispanin-family protein) as an essential NaV1.7-interacting accessory protein for the action of the plant-derived knottin toxin Excelsatoxin A (ExTxA). ExTxA inhibits fast inactivation and induces persistent currents in sensory neurons; in human iPSC-derived sensory neurons this persistent current was largely blocked by a selective NaV1.7 blocker (Pn3a 100 nM), implicating NaV1.7 as a major mediator. (jami2023paincausingstingingnettle pages 1-2)

This establishes a contemporary concept: native accessory proteins can be required to reproduce pharmacology observed in sensory neurons, which may help explain discrepancies between heterologous assays and clinical outcomes. (jami2023paincausingstingingnettle pages 1-2)

2.3 2023: Biochemical regulation by ubiquitination (NEDD4L β†’ NaV1.7)

A 2023 ACS Bio & Med Chem Au study provided direct biochemical evidence that the E3 ligase NEDD4L ubiquitinates the cytoplasmic C‑terminus of NaV1.7. The work also documents motifs in the C‑terminus relevant to regulation (including an IQ motif and a NEDD4L-recognized PY motif) and identifies ubiquitinated lysines by mass spectrometry. (wright2023thecterminalof pages 1-2, wright2023thecterminalof pages 2-3)

This supports a functional annotation element often missing from older descriptions: post-translational modification and trafficking/turnover regulation are likely important determinants of NaV1.7 surface density and nociceptor excitability. (wright2023thecterminalof pages 1-2, wright2023thecterminalof pages 2-3)

2.4 2023: Mechanistic structural basis for pain-causing voltage-sensor mutations

A 2023 Journal of General Physiology study used a tractable bacterial NaV homolog (NaVAb) carrying human-analogous inherited erythromelalgia mutations to provide structural explanations for negative shifts in activation (gain-of-function): widening of the gating-charge translocation pathway or altered hydrophobic/phospholipid interactions favoring outward S4 movement. (wisedchaisri2023structuralbasisfor pages 1-2)

2.5 2024: Structure–function dissection of NaV gating states using engineered NaV1.7 mutants

A 2024 PNAS study solved cryo‑EM structures (2.9–3.4 Γ…) of engineered human NaV1.7 mutants and linked pore-domain contraction to right-shifted activation/static inactivation, refining how structural states map onto electrophysiological behavior. (li2024dissectionofthe pages 1-2)

2.6 2024: New therapeutic modalitiesβ€”biologics and gene regulation

Two notable 2024 directions go beyond classic small-molecule pore blockers:
- Single-domain antibody (VHH) against human NaV1.7: an Aug 2024 study reported a VHH that binds NaV1.7, slows deactivation, reduces nociceptor action potential firing, and reverses hyperalgesia in rodent models. (martina2024anovelantigen pages 1-2)
- AAV-delivered engineered transcriptional repressors: a Sep 2024 preprint reported zinc-finger repressors achieving ~90% SCN9A repression in human iPSC-derived neurons, up to 70% repression in mouse DRG, and up to 60% repression in nonhuman primate DRG after intrathecal delivery, with short-term tolerability in NHP. (samie2024potentandselective pages 1-3)

Together these illustrate a shift from β€œblock the pore” to modulate gating with biologics or reduce SCN9A expression as potentially more durable analgesic strategies. (martina2024anovelantigen pages 1-2, samie2024potentandselective pages 1-3)

3) Current applications and real-world implementations

3.1 Clinical trials: NaV1.7-targeting small molecules and genotype-guided studies

Real-world implementation is best captured by registered clinical trial protocols:

PF‑05089771 (Pfizer) in painful diabetic peripheral neuropathy (DPN):
- NCT02215252 (Phase 2; randomized, double-blind, parallel; COMPLETED) tested PF‑05089771 150 mg BID as monotherapy and as add-on to pregabalin 150 mg BID (300 mg/day).
- Enrollment: 141 participants.
- Primary endpoint: daily pain numeric rating scale (mean of last 7 days).
- Key secondary endpoints: responder rates (30%/50%), Neuropathic Pain Symptom Inventory, PGIC, sleep interference, rescue medication use. (NCT02215252 chunk 1, NCT02215252 chunk 2)

Genotype-guided NaV1.7 strategy in small fiber neuropathy (SFN):
- NCT01911975 (Phase 3; randomized; quadruple-masked; crossover; COMPLETED) evaluated lacosamide 200 mg BID vs placebo in patients with gain-of-function SCN9A mutations and SFN.
- Enrollment: 25.
- Primary endpoint: mean daily pain intensity recorded twice daily over 33 weeks. (NCT01911975 chunk 1)

Inherited erythromelalgia (IEM) precision trial:
- NCT07262268 (Phase 1b; randomized crossover; quadruple-masked; start 2026) enrolls IEM participants with characterized NaV1.7 gain-of-function SCN9A mutations; enrollment 5; primary outcome uses frequent pain scoring. (NCT07262268 chunk 1)

These protocols show how SCN9A biology is operationalized clinically: either by targeting NaV1.7 pharmacologically (often with mixed efficacy historically) or by selecting subjects with SCN9A GOF variants to increase mechanistic alignment and effect size potential. (dormer2023areviewof pages 4-5, NCT02215252 chunk 1)

3.2 Observational genetics in perioperative care

SCN9A variation is also implemented in prospective genotype–phenotype studies:
- NCT02496455: postoperative pain after cesarean section (n=200) with SCN9A SNP genotyping and outcomes including 24-hour VAS pain and tramadol consumption. (NCT02496455 chunk 1)

4) Expert opinions and authoritative analysis (why translation has been difficult)

A 2024 Pain review analyzing the mismatch between preclinical and clinical testing concludes that despite strong genetic support for NaV1.7, NaV1.7-selective inhibitors have not yet proven effective in clinical trials, and highlights key design mismatches: species/population differences, inflammatory pain models vs neuropathic pain trials, evoked pain endpoints vs average pain intensity, and single-dose preclinical studies vs repeat dosing clinically. ()

A 2023 review focusing on SCN9A/Nav1.7 clinical trials similarly concludes that small-molecule programs have often been inconclusive, motivating exploration of alternative approaches (including gene therapy-like strategies). (dormer2023areviewof pages 8-9, dormer2023areviewof pages 4-5)

5) Relevant statistics and quantitative data (selected)

  • Structural resolution: human NaV1.7 drug-bound cryo‑EM structures at 2.6–3.2 Γ… (2023). (wu2023structuralmappingof pages 1-2)
  • Engineered NaV1.7 mutant structures: 2.9–3.4 Γ… (2024). (li2024dissectionofthe pages 1-2)
  • Accessory-protein-dependent pharmacology: ExTxA persistent current in human sensory neurons largely blocked by Pn3a 100 nM (2023). (jami2023paincausingstingingnettle pages 1-2)
  • Small fiber neuropathy epidemiology (from clinical review): incidence 12/100,000 and prevalence 53/100,000; approximately 30% of idiopathic SFN attributed to SCN9A variants (review synthesis). (dormer2023areviewof pages 4-5)
  • Clinical trial sizes/dosing:
  • NCT02215252 (PF‑05089771 DPN): n=141, PF‑05089771 150 mg BID, pregabalin 150 mg BID add-on. (NCT02215252 chunk 1)
  • NCT01911975 (lacosamide in SCN9A-GOF SFN): n=25, lacosamide 200 mg BID, 33-week monitoring. (NCT01911975 chunk 1)
  • Gene repression magnitudes (preclinical): SCN9A repression of ~90% (human iPSC neurons), up to 70% (mouse DRG), up to 60% (NHP DRG). (samie2024potentandselective pages 1-3)

6) Visual evidence (structural map)

The following figure (cropped from the primary 2023 cryo‑EM study) summarizes multiple druggable binding sites mapped onto NaV1.7 and supports the structural pharmacology narrative in Sections 2.1 and 5. (wu2023structuralmappingof media a264241d)

7) Consolidated evidence table (artifact)

The table below consolidates key functional annotation points, evidence types, and translational status with DOIs/URLs.

Category Key points Representative recent sources (DOI/URL) Evidence type
Identity Human SCN9A encodes NaV1.7; explicit match to UniProt Q15858 in biochemical study of the full-length channel. C-terminal region includes IQ motif and PY (PPSY) motif relevant to regulation. (wright2023thecterminalof pages 2-3, wright2023thecterminalof pages 1-2) Wright et al., 2023. DOI: 10.1021/acsbiomedchemau.3c00031; https://doi.org/10.1021/acsbiomedchemau.3c00031 Biochemistry
Structure Canonical voltage-gated sodium channel Ξ±-subunit architecture: ~2,000 aa, 4 homologous domains (DI–DIV), each with 6 TM helices (S1–S6); S1–S4 form VSDs, S5–S6 + P-loop form pore/selectivity filter; DEKA selectivity filter. (toffano2020computationalpipelineto pages 1-2, wood2025sensoryneuronsodium pages 1-2) Toffano et al., 2020. DOI: 10.1038/s41598-020-74591-y; https://doi.org/10.1038/s41598-020-74591-y. Wood et al., 2025. DOI: 10.1085/jgp.202513778; https://doi.org/10.1085/jgp.202513778 Structural/functional review, computational synthesis
Localization NaV1.7 is highly expressed in nociceptive neurons of dorsal root ganglia (DRG), trigeminal ganglia, and sympathetic ganglia; positioned at the plasma membrane to regulate excitability. (dormer2023areviewof pages 8-9) Dormer et al., 2023. DOI: 10.2147/JPR.S388896; https://doi.org/10.2147/JPR.S388896 Review
Physiology In human iPSC-derived nociceptors from inherited erythromelalgia, SCN9A/NaV1.7 gain-of-function shifts activation to more negative voltages, lowers firing threshold, and enhances AP upstroke; supports NaV1.7 as a threshold channel for action-potential initiation in pain pathways. (meents2019theroleof pages 1-2, meents2019theroleof pages 10-12) Meents et al., 2019. DOI: 10.1097/j.pain.0000000000001511; https://doi.org/10.1097/j.pain.0000000000001511 Human electrophysiology, iPSC nociceptors
Regulation NaV1.7 C-terminus is ubiquitinated by NEDD4L; study identified ubiquitinated lysines and defined a CT region containing an EF-hand-like bundle, IQ motif, and PY motif that can regulate channel trafficking/turnover. (wright2023thecterminalof pages 1-2, wright2023thecterminalof pages 2-3) Wright et al., 2023. DOI: 10.1021/acsbiomedchemau.3c00031; https://doi.org/10.1021/acsbiomedchemau.3c00031 Biochemistry, mass spectrometry
Regulation / accessory proteins Plant toxin ExTxA requires TMEM233 (a sensory-neuron dispanin) for pharmacological activity at NaV1.7; toxin-induced persistent current in human sensory neurons was largely blocked by Pn3a 100 nM, showing accessory-protein dependence of Nav1.7 modulation. (jami2023paincausingstingingnettle pages 1-2) Jami et al., 2023. DOI: 10.1038/s41467-023-37963-2; https://doi.org/10.1038/s41467-023-37963-2 Electrophysiology, molecular pharmacology
Structural pharmacology Cryo-EM structures of human NaV1.7 bound to drugs/lead compounds at 2.6–3.2 Γ… mapped multiple binding sites, including site BIG beneath the intracellular gate; vixotrigine occupies a fenestration site; lacosamide also showed unexpected occupancy near the selectivity filter. Figure-level structural atlas of druggable sites was retrieved. (wu2023structuralmappingof pages 1-2, wu2023structuralmappingof media a264241d) Wu et al., 2023. DOI: 10.1038/s41467-023-38942-3; https://doi.org/10.1038/s41467-023-38942-3 Cryo-EM structural pharmacology
Structural mechanism Engineered Nav1.7 mutants solved at 2.9–3.4 Γ… showed correlation between pore-domain contraction and right-shifted activation/static inactivation, refining structure–function understanding of gating states relevant to drug design. (li2024dissectionofthe pages 1-2) Li et al., 2024. DOI: 10.1073/pnas.2322899121; https://doi.org/10.1073/pnas.2322899121 Cryo-EM, electrophysiology
Genetics Human genetics strongly validate SCN9A: gain-of-function variants cause painful syndromes including inherited erythromelalgia (IEM), paroxysmal extreme pain disorder (PEPD), and some small-fiber neuropathy (SFN); loss-of-function variants cause congenital insensitivity to pain (CIP). (baker2020painfulandpainless pages 1-2, meents2019theroleof pages 1-2, yogi2025preclinicalanimalmodels pages 1-3) Baker & Nassar, 2020. DOI: 10.1007/s00424-020-02419-9; https://doi.org/10.1007/s00424-020-02419-9. Meents et al., 2019. DOI above Review, human genetics, electrophysiology
Clinical translation Small-molecule clinical development has been active but disappointing overall; review notes ~30% of idiopathic SFN linked to SCN9A and summarizes funapide/TV-45070, PF-05089771, vixotrigine, and lacosamide programs; expression in DRG/TG/sympathetic neurons supports target rationale but efficacy has often been modest. (dormer2023areviewof pages 4-5) Dormer et al., 2023. DOI: 10.2147/JPR.S388896; https://doi.org/10.2147/JPR.S388896 Review, clinical landscape
Clinical translation / registry PF-05089771 Phase 2 painful diabetic peripheral neuropathy study NCT02215252: completed; n=141; monotherapy 150 mg BID and add-on pregabalin 150 mg BID arms; endpoints included daily pain NRS, responder rates, NPSI, PGIC, sleep interference, rescue medication. (NCT02215252 chunk 1, NCT02215252 chunk 2) ClinicalTrials.gov NCT02215252; https://clinicaltrials.gov/study/NCT02215252 Clinical trial registry
Clinical translation / precision medicine Lacosamide genotype-guided SCN9A gain-of-function SFN study NCT01911975: randomized quadruple-masked crossover; n=25; 200 mg BID vs placebo; pain assessed over 33 weeks. (NCT01911975 chunk 1) ClinicalTrials.gov NCT01911975; https://clinicaltrials.gov/study/NCT01911975 Clinical trial registry
Clinical translation / observational genomics SCN9A polymorphism study NCT02496455: prospective postoperative-pain cohort after cesarean section; n=200; genotyped rs6746030, rs7604448, rs10930214, rs7595255; outcomes were VAS pain and 24 h tramadol consumption. (NCT02496455 chunk 1) ClinicalTrials.gov NCT02496455; https://clinicaltrials.gov/study/NCT02496455 Clinical trial registry, observational genetics
Emerging therapeutics Single-domain antibody (VHH) against human NaV1.7 slowed deactivation, reduced nociceptor firing, and reversed hyperalgesia in rodent models, demonstrating feasibility of a biologic modality. (martina2024anovelantigen pages 1-2) Martina et al., 2024. DOI: 10.1002/advs.202405432; https://doi.org/10.1002/advs.202405432 Biologic engineering, electrophysiology, animal models
Emerging therapeutics Engineered zinc-finger repressors (ZFRs) targeting SCN9A achieved 90% repression in human iPSC-derived neurons, up to 70% repression in mouse DRG, and up to 60% repression in nonhuman-primate DRG after AAV delivery, supporting gene-regulatory analgesic strategies. (samie2024potentandselective pages 1-3) Samie et al., 2024. DOI: 10.1101/2024.09.06.609976; https://doi.org/10.1101/2024.09.06.609976 Preclinical gene regulation, AAV, transcript repression
Emerging clinical precision medicine BHV-7000/opakalim inherited erythromelalgia study NCT07262268: Phase 1b, double-blind crossover, n=5, enrolling participants with characterized NaV1.7 gain-of-function SCN9A mutations; endpoints include maximum pain intensity and attack metrics. (NCT07262268 chunk 1) ClinicalTrials.gov NCT07262268; https://clinicaltrials.gov/study/NCT07262268 Clinical trial registry

Table: This table summarizes functional annotation, mechanism, genetics, and clinical translation for human SCN9A/Nav1.7 using the most relevant gathered evidence, prioritizing 2023–2024 sources where possible. It is useful as a compact reference linking molecular function to experimental support and translational status.

8) Notes on nomenclature and aliases

UniProt lists historical names such as β€œneuroendocrine sodium channel,” β€œPN1,” and β€œhNE‑Na.” These aliases were not directly encountered in the retrieved primary texts; this report therefore treats them as database-derived synonyms and relies on primary literature for functional claims. The SCN9A ↔ NaV1.7 ↔ UniProt Q15858 mapping is explicitly supported in Wright et al. 2023. (wright2023thecterminalof pages 2-3)


Key references (with publication dates and URLs)

  • Wright KM et al. Oct 2023. The C-Terminal of NaV1.7 Is Ubiquitinated by NEDD4L. ACS Bio & Med Chem Au. https://doi.org/10.1021/acsbiomedchemau.3c00031 (wright2023thecterminalof pages 2-3)
  • Wu Q et al. Jun 2023. Structural mapping of Nav1.7 antagonists. Nature Communications. https://doi.org/10.1038/s41467-023-38942-3 (wu2023structuralmappingof pages 1-2)
  • Jami S et al. Apr 2023. Pain-causing stinging nettle toxins target TMEM233 to modulate NaV1.7 function. Nature Communications. https://doi.org/10.1038/s41467-023-37963-2 (jami2023paincausingstingingnettle pages 1-2)
  • Li Z et al. Feb 2024. Dissection of the structure–function relationship of Nav channels. PNAS. https://doi.org/10.1073/pnas.2322899121 (li2024dissectionofthe pages 1-2)
  • Martina M et al. Aug 2024. Single-domain antibodies targeting Nav1.7 reduce pain in animal models. Advanced Science. https://doi.org/10.1002/advs.202405432 (martina2024anovelantigen pages 1-2)
  • Samie M et al. Sep 2024 (preprint). Zinc finger repressors targeting SCN9A. bioRxiv. https://doi.org/10.1101/2024.09.06.609976 (samie2024potentandselective pages 1-3)
  • ClinicalTrials.gov: NCT02215252 (PF‑05089771 in DPN). https://clinicaltrials.gov/study/NCT02215252 (NCT02215252 chunk 1)
  • ClinicalTrials.gov: NCT01911975 (lacosamide in SCN9A-GOF SFN). https://clinicaltrials.gov/study/NCT01911975 (NCT01911975 chunk 1)
  • ClinicalTrials.gov: NCT02496455 (SCN9A polymorphisms and postoperative pain). https://clinicaltrials.gov/study/NCT02496455 (NCT02496455 chunk 1)
  • Yang J et al. Oct 2024. Discordance between preclinical and clinical testing of NaV1.7-selective inhibitors for pain. Pain. https://doi.org/10.1097/j.pain.0000000000003425 ()

References

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  2. (toffano2020computationalpipelineto pages 1-2): Alberto A. Toffano, Giacomo Chiarot, Stefano Zamuner, Margherita Marchi, Erika Salvi, Stephen G. Waxman, Catharina G. Faber, Giuseppe Lauria, Achille Giacometti, and Marta Simeoni. Computational pipeline to probe nav1.7 gain-of-function variants in neuropathic painful syndromes. Scientific Reports, Oct 2020. URL: https://doi.org/10.1038/s41598-020-74591-y, doi:10.1038/s41598-020-74591-y. This article has 8 citations and is from a peer-reviewed journal.

  3. (meents2019theroleof pages 1-2): Jannis E. Meents, Elisangela Bressan, Stephanie Sontag, Alec Foerster, Petra Hautvast, Corinna RΓΆsseler, Martin Hampl, Herdit SchΓΌler, Roman Goetzke, Thi Kim Chi Le, Inge Petter Kleggetveit, Kim Le Cann, Clara Kerth, Anthony M. Rush, Marc Rogers, Zacharias Kohl, Martin Schmelz, Wolfgang Wagner, Ellen JΓΈrum, Barbara Namer, Beate Winner, Martin Zenke, and Angelika Lampert. The role of nav1.7 in human nociceptors: insights from human induced pluripotent stem cell–derived sensory neurons of erythromelalgia patients. Pain, 160:1327-1341, Mar 2019. URL: https://doi.org/10.1097/j.pain.0000000000001511, doi:10.1097/j.pain.0000000000001511. This article has 118 citations and is from a highest quality peer-reviewed journal.

  4. (wood2025sensoryneuronsodium pages 1-2): John N. Wood, Nieng Yan, Jian Huang, Jing Zhao, Armen Akopian, James J. Cox, C. Geoffrey Woods, and Mohammed A. Nassar. Sensory neuron sodium channels as pain targets; from cocaine to journavx (vx-548, suzetrigine). The Journal of general physiology, Apr 2025. URL: https://doi.org/10.1085/jgp.202513778, doi:10.1085/jgp.202513778. This article has 22 citations.

  5. (dormer2023areviewof pages 8-9): Anton Dormer, Mahesh Narayanan, Jerome Schentag, Daniel Achinko, Elton Norman, James Kerrigan, Gary Jay, and William Heydorn. A review of the therapeutic targeting of scn9a and nav1.7 for pain relief in current human clinical trials. Journal of Pain Research, 16:1487-1498, May 2023. URL: https://doi.org/10.2147/jpr.s388896, doi:10.2147/jpr.s388896. This article has 55 citations and is from a peer-reviewed journal.

  6. (baker2020painfulandpainless pages 1-2): Mark D. Baker and Mohammed A. Nassar. Painful and painless mutations of scn9a and scn11a voltage-gated sodium channels. Pflugers Archiv, 472:865-880, Jun 2020. URL: https://doi.org/10.1007/s00424-020-02419-9, doi:10.1007/s00424-020-02419-9. This article has 77 citations.

  7. (wu2023structuralmappingof pages 1-2): Qiurong Wu, Jian Huang, Xiao Fan, Kan Wang, Xueqin Jin, Gaoxingyu Huang, Jiaao Li, Xiaojing Pan, and Nieng Yan. Structural mapping of nav1.7 antagonists. Nature Communications, Jun 2023. URL: https://doi.org/10.1038/s41467-023-38942-3, doi:10.1038/s41467-023-38942-3. This article has 87 citations and is from a highest quality peer-reviewed journal.

  8. (wu2023structuralmappingof media a264241d): Qiurong Wu, Jian Huang, Xiao Fan, Kan Wang, Xueqin Jin, Gaoxingyu Huang, Jiaao Li, Xiaojing Pan, and Nieng Yan. Structural mapping of nav1.7 antagonists. Nature Communications, Jun 2023. URL: https://doi.org/10.1038/s41467-023-38942-3, doi:10.1038/s41467-023-38942-3. This article has 87 citations and is from a highest quality peer-reviewed journal.

  9. (jami2023paincausingstingingnettle pages 1-2): Sina Jami, Jennifer R. Deuis, Tabea Klasfauseweh, Xiaoyang Cheng, Sergey Kurdyukov, Felicity Chung, Andrei L. Okorokov, Shengnan Li, Jiangtao Zhang, Ben Cristofori-Armstrong, Mathilde R. Israel, Robert J. Ju, Samuel D. Robinson, Peng Zhao, Lotten Ragnarsson, Γ…sa Andersson, Poanna Tran, Vanessa Schendel, Kirsten L. McMahon, Hue N. T. Tran, Yanni K.-Y. Chin, Yifei Zhu, Junyu Liu, Theo Crawford, Saipriyaa Purushothamvasan, Abdella M. Habib, David A. Andersson, Lachlan D. Rash, John N. Wood, Jing Zhao, Samantha J. Stehbens, Mehdi Mobli, Andreas Leffler, Daohua Jiang, James J. Cox, Stephen G. Waxman, Sulayman D. Dib-Hajj, G. Gregory Neely, Thomas Durek, and Irina Vetter. Pain-causing stinging nettle toxins target tmem233 to modulate nav1.7 function. Nature Communications, Apr 2023. URL: https://doi.org/10.1038/s41467-023-37963-2, doi:10.1038/s41467-023-37963-2. This article has 27 citations and is from a highest quality peer-reviewed journal.

  10. (wright2023thecterminalof pages 1-2): Katharine M. Wright, Hanjie Jiang, Wendy Xia, Michael B. Murphy, Tatiana N. Boronina, Justin N. Nwafor, HyoJeon Kim, Akunna M. Iheanacho, P. Aitana Azurmendi, Robert N. Cole, Philip A. Cole, and Sandra B. Gabelli. The c-terminal of nav1.7 is ubiquitinated by nedd4l. ACS Bio & Med Chem Au, 3:516-527, Oct 2023. URL: https://doi.org/10.1021/acsbiomedchemau.3c00031, doi:10.1021/acsbiomedchemau.3c00031. This article has 4 citations.

  11. (wisedchaisri2023structuralbasisfor pages 1-2): Goragot Wisedchaisri, Tamer M. Gamal El-Din, Natasha M. Powell, Ning Zheng, and William A. Catterall. Structural basis for severe pain caused by mutations in the voltage sensors of sodium channel nav1.7. The Journal of General Physiology, Oct 2023. URL: https://doi.org/10.1085/jgp.202313450, doi:10.1085/jgp.202313450. This article has 6 citations.

  12. (li2024dissectionofthe pages 1-2): Zhangqiang Li, Qiurong Wu, Gaoxingyu Huang, Xueqin Jin, Jiaao Li, Xiaojing Pan, and Nieng Yan. Dissection of the structure–function relationship of nav channels. Proceedings of the National Academy of Sciences of the United States of America, Feb 2024. URL: https://doi.org/10.1073/pnas.2322899121, doi:10.1073/pnas.2322899121. This article has 11 citations and is from a highest quality peer-reviewed journal.

  13. (martina2024anovelantigen pages 1-2): Marzia Martina, Umberto Banderali, Alvaro Yogi, Mehdi Arbabi Ghahroudi, Hong Liu, Traian Sulea, Yves Durocher, Greg Hussack, Henk van Faassen, Balu Chakravarty, Qing Yan Liu, Umar Iqbal, Binbing Ling, Etienne Lessard, Joey Sheff, Anna Robotham, Debbie Callaghan, Maria Moreno, Tanya Comas, Dao Ly, and Danica Stanimirovic. A novel antigen design strategy to isolate single‐domain antibodies that target human nav1.7 and reduce pain in animal models. Advanced Science, Aug 2024. URL: https://doi.org/10.1002/advs.202405432, doi:10.1002/advs.202405432. This article has 12 citations and is from a peer-reviewed journal.

  14. (samie2024potentandselective pages 1-3): Mohammad Samie, Toufan Parman, Mihika Jalan, Jisoo Lee, Patrick Dunn, Jason Eshleman, Dianna Baldwin Vidales, Josh Holter, Brian Jones, Yonghua Pan, Marina Falaleeva, Sarah Hinkley, Alicia Goodwin, Tammy Chen, Sumita Bhardwaj, Alex Ward, Michael Trias, Anthony Chikere, Madhura Som, Yanmei Lu, Sandeep Yadav, Kathleen Meyer, Bryan Zeitler, Jason Fontenot, and Amy Pooler. Potent and selective repression of scn9a by engineered zinc finger repressors for the treatment of neuropathic pain. bioRxiv, Sep 2024. URL: https://doi.org/10.1101/2024.09.06.609976, doi:10.1101/2024.09.06.609976. This article has 5 citations.

  15. (NCT02215252 chunk 1): A Clinical Trial To Evaluate PF-05089771 On Its Own And As An Add-On Therapy To Pregabalin (Lyrica) For The Treatment Of Pain Due To Diabetic Peripheral Neuropathy (DPN). Pfizer. 2014. ClinicalTrials.gov Identifier: NCT02215252

  16. (NCT02215252 chunk 2): A Clinical Trial To Evaluate PF-05089771 On Its Own And As An Add-On Therapy To Pregabalin (Lyrica) For The Treatment Of Pain Due To Diabetic Peripheral Neuropathy (DPN). Pfizer. 2014. ClinicalTrials.gov Identifier: NCT02215252

  17. (NCT01911975 chunk 1): Catharina G. Faber. Safety and Tolerability of Lacosamide in Patients With Gain-of-function Nav1.7 Mutations Related Small Fiber Neuropathy. Academisch Ziekenhuis Maastricht. 2014. ClinicalTrials.gov Identifier: NCT01911975

  18. (NCT07262268 chunk 1): A Phase 1b Study of BHV-7000 in Participants With Inherited Erythromelalgia. Biohaven Therapeutics Ltd.. 2026. ClinicalTrials.gov Identifier: NCT07262268

  19. (dormer2023areviewof pages 4-5): Anton Dormer, Mahesh Narayanan, Jerome Schentag, Daniel Achinko, Elton Norman, James Kerrigan, Gary Jay, and William Heydorn. A review of the therapeutic targeting of scn9a and nav1.7 for pain relief in current human clinical trials. Journal of Pain Research, 16:1487-1498, May 2023. URL: https://doi.org/10.2147/jpr.s388896, doi:10.2147/jpr.s388896. This article has 55 citations and is from a peer-reviewed journal.

  20. (NCT02496455 chunk 1): Tuğba Karaman. The Impact of the SCN9A Gene Polymorphism on Postoperative Pain. Tokat Gaziosmanpasa University. 2015. ClinicalTrials.gov Identifier: NCT02496455

  21. (meents2019theroleof pages 10-12): Jannis E. Meents, Elisangela Bressan, Stephanie Sontag, Alec Foerster, Petra Hautvast, Corinna RΓΆsseler, Martin Hampl, Herdit SchΓΌler, Roman Goetzke, Thi Kim Chi Le, Inge Petter Kleggetveit, Kim Le Cann, Clara Kerth, Anthony M. Rush, Marc Rogers, Zacharias Kohl, Martin Schmelz, Wolfgang Wagner, Ellen JΓΈrum, Barbara Namer, Beate Winner, Martin Zenke, and Angelika Lampert. The role of nav1.7 in human nociceptors: insights from human induced pluripotent stem cell–derived sensory neurons of erythromelalgia patients. Pain, 160:1327-1341, Mar 2019. URL: https://doi.org/10.1097/j.pain.0000000000001511, doi:10.1097/j.pain.0000000000001511. This article has 118 citations and is from a highest quality peer-reviewed journal.

  22. (yogi2025preclinicalanimalmodels pages 1-3): Alvaro Yogi, Umberto Banderali, Maria J. Moreno, and Marzia Martina. Preclinical animal models to investigate the role of nav1.7 ion channels in pain. Apr 2025. URL: https://doi.org/10.3390/life15040640, doi:10.3390/life15040640. This article has 13 citations.

Artifacts

Citations

  1. wright2023thecterminalof pages 2-3
  2. toffano2020computationalpipelineto pages 1-2
  3. dormer2023areviewof pages 8-9
  4. wu2023structuralmappingof pages 1-2
  5. jami2023paincausingstingingnettle pages 1-2
  6. wisedchaisri2023structuralbasisfor pages 1-2
  7. li2024dissectionofthe pages 1-2
  8. martina2024anovelantigen pages 1-2
  9. samie2024potentandselective pages 1-3
  10. dormer2023areviewof pages 4-5
  11. meents2019theroleof pages 1-2
  12. wood2025sensoryneuronsodium pages 1-2
  13. baker2020painfulandpainless pages 1-2
  14. wright2023thecterminalof pages 1-2
  15. meents2019theroleof pages 10-12
  16. yogi2025preclinicalanimalmodels pages 1-3
  17. https://doi.org/10.1021/acsbiomedchemau.3c00031
  18. https://doi.org/10.1038/s41598-020-74591-y.
  19. https://doi.org/10.1085/jgp.202513778
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πŸ“š Additional Documentation

Notes

(SCN9A-notes.md)

SCN9A (Nav1.7) review notes

UniProt: Q15858 | HGNC: SCN9A | Taxon: NCBITaxon:9606 (human)
PANTHER family: PTHR10037 (VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM)

Core biology (synthesis)

SCN9A encodes the pore-forming alpha subunit of Nav1.7, a tetrodotoxin-sensitive
voltage-gated sodium channel. It is a single-polypeptide channel of ~1977 aa with the
canonical Nav architecture: 4 internal homologous repeats (domains I–IV), each with 6
transmembrane segments (S1–S6); S4 segments are the voltage sensors and the S5–S6
re-entrant loops form the Na+-selective pore. The channel is functional on its own but
is modulated by beta subunits (SCN1B/SCN2B/SCN3B/SCN4B).

  • Molecular function: voltage-gated sodium channel activity β€” opens on membrane
    depolarization and selectively conducts Na+ down its electrochemical gradient, mediating
    the rising (depolarizing) phase of the action potential.
    [Rhea:RHEA:34963 Na(+)(in)=Na(+)(out); PMID:7720699 functional expression, TTX-sensitive,
    rapid activation/inactivation kinetics]
  • Cellular location: plasma membrane, multi-pass; in nociceptor neurons localizes to
    axons, neuron terminals, and nodes of Ranvier. PMID:30795902
  • Biological role: Nav1.7 is the principal sodium channel setting the gain/threshold of
    nociceptor (pain-sensing) neurons, strongly expressed in dorsal root ganglion (DRG)
    and sympathetic ganglia. It acts as a "threshold channel" that amplifies subthreshold
    depolarizations.

Tissue specificity

Strongly expressed in dorsal root ganglion (nociceptors), sympathetic neurons, with
minor levels elsewhere (smooth muscle, MTC cell line, C-cell carcinoma, vagus nerve).
Original cloning paper explicitly: "Transcripts were not identified in pituitary gland,
brain, heart, liver or kidney" β€” i.e. NOT a cardiac channel (cardiac Nav is
Nav1.5/SCN5A). PMID:7720699

Human genetics = strongest functional evidence

Nav1.7 function is exceptionally well validated by human Mendelian genetics:
- Congenital insensitivity to pain (CIP) β€” autosomal recessive, biallelic nonsense/LOF
mutations (S459X, I767X, W897X); complete loss of function abolishes pain. "SCN9A is an
essential and non-redundant requirement for nociception in humans." PMID:17167479
- Inherited/primary erythromelalgia (PERYTHM) β€” gain-of-function (hyperpolarizing shift
of activation) β†’ burning extremity pain. [PMID:15385606, PMID:19369487, PMID:24311784]
- Paroxysmal extreme pain disorder (PEPD) β€” gain-of-function (impaired fast
inactivation β†’ persistent current). PMID:17145499

These establish GO:0019233 sensory perception of pain (IMP) on the firmest possible footing.

Annotation-relevant publication notes

  • PMID:7720699 (EMBO J 1995): cloning/functional expression of hNE-Na (=Nav1.7). Supports
    VGSC activity (IDA), plasma membrane, action potential generation/propagation. Full text
    abstract-only in cache but classic primary functional paper.
  • PMID:17145499 (Neuron 2006, PEPD): supports VGSC activity (IDA), plasma membrane (IMP),
    sensory perception of pain (IMP), action potential propagation.
  • PMID:30795902 (Neuron 2019, "Defining Functional Role of Nav1.7 in Human Nociception"):
    full text available; supports neuronal action potential (IDA), sensory perception of pain
    (IMP), node of Ranvier (IDA), axon terminus (IDA).
  • PMID:30765606 (Science 2019, cryo-EM Nav1.7-beta1-beta2 + toxins): supports VGSC complex
    (part_of, ComplexPortal IPI), membrane depolarization during action potential (IDA).
  • PMID:37117223 (Nat Commun 2023, nettle toxins/TMEM233): IPI to TMEM233 (B4DJY2) modulating
    Nav1.7 gating. Annotated as generic GO:0005515 protein binding β€” per project guidelines
    "protein binding" is uninformative; the real biology is channel-regulator interaction.

Questionable / over-propagated annotations to scrutinize

  1. GO:0086002 cardiac muscle cell action potential involved in contraction (IBA,
    GO_REF:0000033). Nav1.7 is NOT a cardiac channel (that is Nav1.5/SCN5A). This is
    phylogenetic over-propagation from the Nav family tree. β†’ MARK_AS_OVER_ANNOTATED / NON_CORE.
  2. GO:0007623 circadian rhythm (IEA, Ensembl ortholog GO_REF:0000107, from mouse
    Q62205/Scn9a). Not a recognized core function of human Nav1.7; ortholog-transfer, weak.
    β†’ KEEP_AS_NON_CORE at best / candidate over-annotation.
  3. GO:0050974 detection of mechanical stimulus involved in sensory perception (IEA,
    Ensembl). Nav1.7 is primarily a nociceptor amplifier; mechanosensation detection per se
    is debatable β€” Nav1.7 contributes to mechanical pain but is not the mechanotransducer.
  4. GO:0050965 detection of temperature stimulus involved in sensory perception of pain
    (IEA, Ensembl). Plausible (Nav1.7 needed for some thermal/cold pain) but IEA-only.
  5. Generic/high-level IEA terms (monoatomic ion channel activity, monoatomic cation channel
    activity, ion transport, transmembrane transport, membrane) β€” correct but redundant
    parents of the specific experimentally-supported terms; non-core.
  6. GO:0005515 protein binding (IPI, PMID:37117223) β€” uninformative per guidelines.

πŸ“„ View Raw YAML

id: Q15858
gene_symbol: SCN9A
product_type: PROTEIN
status: COMPLETE
taxon:
  id: NCBITaxon:9606
  label: Homo sapiens
description: SCN9A encodes the pore-forming alpha subunit of Nav1.7, a tetrodotoxin-sensitive
  voltage-gated sodium channel. It is a single large polypeptide (~1977 aa) with the
  canonical Nav architecture of four internal homologous repeats (domains I-IV), each
  containing six transmembrane segments (S1-S6); the S4 segments are the voltage sensors
  and the S5-S6 re-entrant loops form the Na+-selective pore. The channel is functional
  on its own as a multi-pass plasma membrane protein and is modulated by auxiliary
  beta subunits (SCN1B, SCN2B, SCN3B, SCN4B). On membrane depolarization the channel
  opens and selectively conducts Na+ down its electrochemical gradient, mediating the
  rising (depolarizing) phase of the action potential. Nav1.7 is strongly expressed
  in peripheral sensory neurons, most notably small-diameter nociceptive dorsal root
  ganglion neurons, and in sympathetic ganglion neurons; in nociceptors it localizes
  to the soma membrane, axons, axon/nerve terminals, and nodes of Ranvier, where it
  acts as a threshold/amplifier channel that boosts subthreshold depolarizations and
  sets the gain for action potential firing. Loss-of-function mutations cause complete
  congenital inability to perceive pain, while gain-of-function mutations cause inherited
  erythromelalgia and paroxysmal extreme pain disorder, establishing Nav1.7 as an essential,
  non-redundant determinant of human pain sensation.
alternative_products:
- name: '1'
  id: Q15858-1
- name: '2'
  id: Q15858-2
  sequence_note: VSP_012028
- name: '3'
  id: Q15858-3
  sequence_note: VSP_012029
- name: '4'
  id: Q15858-4
  sequence_note: VSP_012028, VSP_012029
existing_annotations:
- term:
    id: GO:0001518
    label: voltage-gated sodium channel complex
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  qualifier: part_of
  review:
    summary: Nav1.7 is the pore-forming alpha subunit of a voltage-gated sodium channel
      that assembles with auxiliary beta subunits (SCN1B-SCN4B) into the channel complex.
      Membership in the VGSC complex is directly demonstrated by cryo-EM (PMID:30765606)
      and is consistent across the phylogenetic family.
    action: ACCEPT
    reason: Well-supported by phylogenetic inference and corroborated by direct structural
      evidence; correct cellular component for the alpha subunit.
    supported_by:
    - reference_id: PMID:30765606
      supporting_text: Here we report the cryo-electron microscopy structures of the
        human Nav1.7-Ξ²1-Ξ²2 complex
- term:
    id: GO:0005248
    label: voltage-gated sodium channel activity
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  qualifier: enables
  review:
    summary: Voltage-gated sodium channel activity is the defining molecular function
      of Nav1.7, demonstrated directly by functional expression (PMID:7720699, PMID:17145499)
      and broadly conserved across the Nav family.
    action: ACCEPT
    reason: Core molecular function, supported by both IBA and multiple experimental
      IDA annotations.
    supported_by:
    - reference_id: PMID:7720699
      supporting_text: The channel exhibited rapid activation and inactivation kinetics,
        and was blocked by tetrodotoxin and cadmium with IC50 values of 24.5 nM and
        1.1 mM, respectively.
- term:
    id: GO:0035725
    label: sodium ion transmembrane transport
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  qualifier: involved_in
  review:
    summary: As a Na+-selective channel, Nav1.7 mediates transmembrane movement of
      Na+ ions (Na(+)(in) = Na(+)(out)), the process directly underlying its channel
      activity.
    action: ACCEPT
    reason: Accurate and specific process term for a sodium channel; directly tied
      to the enabling molecular function and supported by the catalytic activity (Rhea:RHEA:34963).
    supported_by:
    - reference_id: PMID:7720699
      supporting_text: A member of a new subclass of the voltage-activated sodium
        channel genes has been cloned from the human medullary thyroid carcinoma (hMTC)
        cell line.
- term:
    id: GO:0086002
    label: cardiac muscle cell action potential involved in contraction
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  qualifier: involved_in
  review:
    summary: This cardiac process term is over-propagated from the Nav family tree.
      Nav1.7 is not a cardiac channel; the cardiac voltage-gated sodium channel is
      Nav1.5 (SCN5A). The original cloning study explicitly failed to detect SCN9A
      transcripts in heart.
    action: MARK_AS_OVER_ANNOTATED
    reason: Phylogenetic over-propagation. Nav1.7 is expressed in peripheral sensory
      and sympathetic neurons, not in cardiomyocytes, and has no established role in
      cardiac muscle contraction. The IBA WITH/FROM set (P35498 Nav1.1, Q14524 Nav1.5)
      reflects cardiac-channel paralogs, not SCN9A.
    supported_by:
    - reference_id: PMID:7720699
      supporting_text: Transcripts were not identified in pituitary gland, brain,
        heart, liver or kidney, indicating that the hNE-Na is a sodium channel solely
        expressed in neuroendocrine cells.
- term:
    id: GO:0001508
    label: action potential
  evidence_type: IEA
  original_reference_id: GO_REF:0000117
  qualifier: involved_in
  review:
    summary: Nav1.7 contributes to action potential generation, but this is a high-level
      parent of the more specific experimentally-supported terms neuronal action potential
      (GO:0019228) and membrane depolarization during action potential (GO:0086010)
      already annotated.
    action: KEEP_AS_NON_CORE
    reason: Correct but redundant general term; the specific neuronal terms capture
      the biology more informatively.
    supported_by:
    - reference_id: PMID:7720699
      supporting_text: Action potentials were generated in cells expressing high levels
        of hNE-Na.
- term:
    id: GO:0001518
    label: voltage-gated sodium channel complex
  evidence_type: IEA
  original_reference_id: GO_REF:0000002
  qualifier: part_of
  review:
    summary: InterPro-based electronic annotation of VGSC complex membership; redundant
      with the experimental IPI (PMID:30765606) and IBA annotations to the same term.
    action: ACCEPT
    reason: Correct component, consistent with the experimentally and phylogenetically
      supported annotations to the identical term.
- term:
    id: GO:0005216
    label: monoatomic ion channel activity
  evidence_type: IEA
  original_reference_id: GO_REF:0000002
  qualifier: enables
  review:
    summary: High-level parent of the specific, experimentally-supported voltage-gated
      sodium channel activity (GO:0005248).
    action: KEEP_AS_NON_CORE
    reason: Correct but uninformatively general; superseded by the specific MF term.
- term:
    id: GO:0005248
    label: voltage-gated sodium channel activity
  evidence_type: IEA
  original_reference_id: GO_REF:0000120
  qualifier: enables
  review:
    summary: Electronic assertion of the core molecular function, redundant with the
      experimental IDA and IBA annotations to the same term.
    action: ACCEPT
    reason: Correct core molecular function; consistent with experimental evidence.
- term:
    id: GO:0005261
    label: monoatomic cation channel activity
  evidence_type: IEA
  original_reference_id: GO_REF:0000002
  qualifier: enables
  review:
    summary: High-level parent of voltage-gated sodium channel activity (GO:0005248).
    action: KEEP_AS_NON_CORE
    reason: Correct but uninformatively general; superseded by the specific Na+ channel
      MF term.
- term:
    id: GO:0005886
    label: plasma membrane
  evidence_type: IEA
  original_reference_id: GO_REF:0000120
  qualifier: located_in
  review:
    summary: Nav1.7 is a multi-pass plasma membrane protein, directly demonstrated
      by multiple experimental studies.
    action: ACCEPT
    reason: Correct and core cellular location of the channel; supported by EXP/IMP
      annotations and UniProt subcellular location (Cell membrane).
    supported_by:
    - reference_id: PMID:30765606
      supporting_text: Here we report the cryo-electron microscopy structures of the
        human Nav1.7-Ξ²1-Ξ²2 complex
- term:
    id: GO:0006811
    label: monoatomic ion transport
  evidence_type: IEA
  original_reference_id: GO_REF:0000002
  qualifier: involved_in
  review:
    summary: High-level parent of sodium ion transport / sodium ion transmembrane
      transport.
    action: KEEP_AS_NON_CORE
    reason: Correct but uninformatively general; superseded by the specific Na+ transport
      terms.
- term:
    id: GO:0006814
    label: sodium ion transport
  evidence_type: IEA
  original_reference_id: GO_REF:0000002
  qualifier: involved_in
  review:
    summary: Sodium ion transport is the process mediated by this Na+-selective channel,
      though the more specific GO:0035725 (sodium ion transmembrane transport, IBA)
      is preferable.
    action: KEEP_AS_NON_CORE
    reason: Correct but a less specific sibling/parent of the IBA-annotated sodium
      ion transmembrane transport term.
- term:
    id: GO:0016020
    label: membrane
  evidence_type: IEA
  original_reference_id: GO_REF:0000002
  qualifier: located_in
  review:
    summary: High-level parent of plasma membrane (GO:0005886), the specific experimentally-supported
      location.
    action: KEEP_AS_NON_CORE
    reason: Correct but uninformatively general; superseded by plasma membrane.
- term:
    id: GO:0030424
    label: axon
  evidence_type: IEA
  original_reference_id: GO_REF:0000044
  qualifier: located_in
  review:
    summary: Nav1.7 localizes to axons of nociceptor neurons, directly demonstrated
      in human iPSC-derived nociceptors (PMID:30795902) and consistent with the UniProt
      subcellular location (Cell projection, axon).
    action: KEEP_AS_NON_CORE
    reason: Accurate location in sensory neurons; non-core relative to the channel's
      molecular function but a meaningful site of action. Redundant with the IDA-supported
      axon-related localizations.
    supported_by:
    - reference_id: PMID:30795902
      supporting_text: localized at the soma membrane, axon, axon
- term:
    id: GO:0043005
    label: neuron projection
  evidence_type: IEA
  original_reference_id: GO_REF:0000044
  qualifier: located_in
  review:
    summary: Parent term encompassing axon/nerve terminals where Nav1.7 localizes;
      UniProt records Cell projection, neuron projection (PMID:30795902).
    action: KEEP_AS_NON_CORE
    reason: Correct but a general parent of the more specific axon, axon terminus,
      and node of Ranvier localizations.
    supported_by:
    - reference_id: PMID:30795902
      supporting_text: localized at the soma membrane, axon, axon
- term:
    id: GO:0055085
    label: transmembrane transport
  evidence_type: IEA
  original_reference_id: GO_REF:0000002
  qualifier: involved_in
  review:
    summary: High-level parent of sodium ion transmembrane transport (GO:0035725).
    action: KEEP_AS_NON_CORE
    reason: Correct but uninformatively general; superseded by the specific Na+ transmembrane
      transport term.
- term:
    id: GO:0007623
    label: circadian rhythm
  evidence_type: IEA
  original_reference_id: GO_REF:0000107
  qualifier: involved_in
  review:
    summary: Electronic ortholog-transfer annotation from mouse Scn9a (Q62205) via
      Ensembl Compara. There is no established role for human Nav1.7 in circadian
      rhythm, and this is not part of the channel's well-characterized nociceptor
      biology.
    action: REMOVE
    reason: Weakly supported ortholog-transfer (IEA) annotation with no experimental
      basis in human and no mechanistic link to the channel's core function. It does
      not appear in UniProt's curated function summary and risks implying an unsubstantiated
      role; better excluded than retained as non-core.
- term:
    id: GO:0050965
    label: detection of temperature stimulus involved in sensory perception of pain
  evidence_type: IEA
  original_reference_id: GO_REF:0000107
  qualifier: involved_in
  review:
    summary: Electronic ortholog-transfer from mouse Scn9a. Nav1.7 loss in humans
      produces thermal hypoesthesia and abolishes thermal/noxious pain, so a role
      in thermal pain signalling is biologically plausible, but Nav1.7 amplifies nociceptor
      excitability rather than directly transducing temperature.
    action: KEEP_AS_NON_CORE
    reason: Plausible peripheral role consistent with CIP thermal phenotypes, but
      IEA-only and not a core/direct molecular function; Nav1.7 is a downstream amplifier,
      not the thermal sensor. Keep as a non-core process annotation.
    supported_by:
    - reference_id: PMID:30795902
      supporting_text: Cold and warm detection thresholds in both the hand and the
        foot were reduced when compared to the normative range
- term:
    id: GO:0050974
    label: detection of mechanical stimulus involved in sensory perception
  evidence_type: IEA
  original_reference_id: GO_REF:0000107
  qualifier: involved_in
  review:
    summary: Electronic ortholog-transfer from mouse Scn9a. Nav1.7 contributes to
      mechanical pain sensitivity by amplifying nociceptor firing, but it is not the
      primary mechanotransducer; in CIP patients mechanical detection thresholds were
      normal while mechanical pain was abolished.
    action: KEEP_AS_NON_CORE
    reason: Nav1.7 supports mechanical nociception but does not detect mechanical
      stimuli directly; the term overstates a direct sensory-transduction role. Retain
      as non-core rather than core.
    supported_by:
    - reference_id: PMID:30795902
      supporting_text: Mechanical and vibration detection thresholds were normal
- term:
    id: GO:0001518
    label: voltage-gated sodium channel complex
  evidence_type: IPI
  original_reference_id: PMID:30765606
  qualifier: part_of
  review:
    summary: Cryo-EM structures of human Nav1.7 in complex with auxiliary subunits
      (SCN1B/SCN2B) directly establish that SCN9A is part of the voltage-gated sodium
      channel complex.
    action: ACCEPT
    reason: Directly experimentally demonstrated complex membership (ComplexPortal/structure-based);
      core cellular component.
    supported_by:
    - reference_id: PMID:30765606
      supporting_text: Here we report the cryo-electron microscopy structures of the
        human Nav1.7-Ξ²1-Ξ²2 complex
- term:
    id: GO:0086010
    label: membrane depolarization during action potential
  evidence_type: IDA
  original_reference_id: PMID:30765606
  qualifier: involved_in
  review:
    summary: Nav1.7 conducts the Na+ influx that produces membrane depolarization
      during the rising phase of the action potential, consistent with its established
      channel function.
    action: ACCEPT
    reason: Accurate and specific process directly mediated by the channel; well aligned
      with UniProt FUNCTION ("influx of Na(+) ions provokes membrane depolarization").
    supported_by:
    - reference_id: PMID:30765606
      supporting_text: Voltage-gated sodium channel Nav1.7 represents a promising
        target for pain relief.
- term:
    id: GO:0005886
    label: plasma membrane
  evidence_type: EXP
  original_reference_id: PMID:15385606
  qualifier: located_in
  review:
    summary: Experimental localization of Nav1.7 (including erythromelalgia mutants)
      to the cell membrane.
    action: ACCEPT
    reason: Correct, experimentally-supported core location of the channel.
    supported_by:
    - reference_id: PMID:15385606
      supporting_text: Electrophysiological properties of mutant Nav1.7 sodium channels
        in a painful inherited neuropathy.
- term:
    id: GO:0005886
    label: plasma membrane
  evidence_type: EXP
  original_reference_id: PMID:17167479
  qualifier: located_in
  review:
    summary: Functional expression of wild-type and mutant Nav1.7 in HEK293 cells
      demonstrating plasma-membrane Na+ currents (loss of function in CIP mutants).
    action: ACCEPT
    reason: Correct, experimentally-supported core location.
    supported_by:
    - reference_id: PMID:17167479
      supporting_text: Whole-cell voltage clamp recordings from cells co-expressing
        wild-type Nav1.7 with the Ξ²1Ξ²2 subunits, revealed a voltage-gated Na+ current
- term:
    id: GO:0005886
    label: plasma membrane
  evidence_type: EXP
  original_reference_id: PMID:19369487
  qualifier: located_in
  review:
    summary: Experimental characterization of inherited erythromelalgia mutants with
      cell-membrane localization/function.
    action: ACCEPT
    reason: Correct, experimentally-supported core location.
    supported_by:
    - reference_id: PMID:19369487
      supporting_text: 'Early- and late-onset inherited erythromelalgia: genotype-phenotype
        correlation.'
- term:
    id: GO:0005886
    label: plasma membrane
  evidence_type: EXP
  original_reference_id: PMID:24311784
  qualifier: located_in
  review:
    summary: Functional study of the A1632T erythromelalgia mutant with surface expression
      and altered fast inactivation.
    action: ACCEPT
    reason: Correct, experimentally-supported core location.
    supported_by:
    - reference_id: PMID:24311784
      supporting_text: 'sodium channel Nav1.7 A1632T mutation causes erythromelalgia
        due to a shift of fast inactivation'
- term:
    id: GO:0005886
    label: plasma membrane
  evidence_type: EXP
  original_reference_id: PMID:25240195
  qualifier: located_in
  review:
    summary: Functional study showing PKC phosphorylation enhances Nav1.7 resurgent
      currents at the cell membrane.
    action: ACCEPT
    reason: Correct, experimentally-supported core location.
    supported_by:
    - reference_id: PMID:25240195
      supporting_text: Protein kinase C enhances human sodium channel hNav1.7 resurgent
        currents via a serine residue in the domain III-IV linker.
- term:
    id: GO:0005886
    label: plasma membrane
  evidence_type: EXP
  original_reference_id: PMID:26680203
  qualifier: located_in
  review:
    summary: Structural/functional study of Nav1.7 inhibition by a small-molecule
      antagonist, consistent with the channel residing in the cell membrane.
    action: ACCEPT
    reason: Correct, experimentally-supported core location.
    supported_by:
    - reference_id: PMID:26680203
      supporting_text: Structural basis of Nav1.7 inhibition by an isoform-selective
        small-molecule antagonist.
- term:
    id: GO:0005886
    label: plasma membrane
  evidence_type: EXP
  original_reference_id: PMID:7720699
  qualifier: located_in
  review:
    summary: Original functional expression of hNE-Na (Nav1.7) producing voltage-gated
      Na+ currents and action potentials at the cell surface.
    action: ACCEPT
    reason: Correct, experimentally-supported core location from the founding functional
      study.
    supported_by:
    - reference_id: PMID:7720699
      supporting_text: The hNE-Na alpha subunit was transiently expressed in human
        embryonic kidney cells either alone or in combination with the human sodium
        channel beta 1 subunit.
- term:
    id: GO:0005248
    label: voltage-gated sodium channel activity
  evidence_type: IDA
  original_reference_id: PMID:7720699
  qualifier: enables
  review:
    summary: The founding study cloned hNE-Na (Nav1.7) and demonstrated voltage-gated,
      TTX-sensitive Na+ channel activity with rapid activation/inactivation kinetics
      upon heterologous expression.
    action: ACCEPT
    reason: Direct experimental demonstration of the core molecular function; primary
      evidence for GO:0005248.
    supported_by:
    - reference_id: PMID:7720699
      supporting_text: The channel exhibited rapid activation and inactivation kinetics,
        and was blocked by tetrodotoxin and cadmium with IC50 values of 24.5 nM and
        1.1 mM, respectively.
- term:
    id: GO:0019228
    label: neuronal action potential
  evidence_type: IDA
  original_reference_id: PMID:30795902
  qualifier: involved_in
  review:
    summary: In human iPSC-derived nociceptors and CIP studies, Nav1.7 is required
      for normal nociceptor action potential firing, defining its role in the neuronal
      action potential.
    action: ACCEPT
    reason: Specific, experimentally-supported neuronal process directly reflecting
      Nav1.7's threshold/amplifier role in sensory neurons.
    supported_by:
    - reference_id: PMID:30795902
      supporting_text: Defining the Functional Role of Na(V)1.7 in Human Nociception.
- term:
    id: GO:0019233
    label: sensory perception of pain
  evidence_type: IMP
  original_reference_id: PMID:30795902
  qualifier: involved_in
  review:
    summary: Loss of functional Nav1.7 in CIP participants abolishes the perception
      of noxious thermal and mechanical stimuli as painful, demonstrating an essential
      role in pain sensation.
    action: ACCEPT
    reason: Decisive human-genetics evidence; core biological process of Nav1.7.
    supported_by:
    - reference_id: PMID:30795902
      supporting_text: neither noxious temperature nor noxious mechanical stimuli
        were felt as painful
- term:
    id: GO:0033268
    label: node of Ranvier
  evidence_type: IDA
  original_reference_id: PMID:30795902
  qualifier: located_in
  review:
    summary: CRISPR-tagged endogenous Nav1.7 localized to the great majority of nodes
      of Ranvier in myelinated human iPSC-nociceptor co-cultures.
    action: ACCEPT
    reason: Directly demonstrated localization in human neurons; specific and informative
      cellular component.
    supported_by:
    - reference_id: PMID:30795902
      supporting_text: NaV1.7 could be seen localized to >90% of nodes of Ranvier
        in myelinated axons
- term:
    id: GO:0043679
    label: axon terminus
  evidence_type: IDA
  original_reference_id: PMID:30795902
  qualifier: located_in
  review:
    summary: Endogenous tagged Nav1.7 was enriched in terminal structures of human
      iPSC nociceptors, consistent with prior reports of axon-terminal localization
      in rodent DRG neurons.
    action: ACCEPT
    reason: Directly demonstrated localization; specific and informative component
      relevant to action potential initiation/propagation at terminals.
    supported_by:
    - reference_id: PMID:30795902
      supporting_text: staining revealed enrichment of NaV1.7 in terminal structures
        of our iPSC nociceptors
- term:
    id: GO:0098870
    label: action potential propagation
  evidence_type: IDA
  original_reference_id: PMID:17145499
  qualifier: involved_in
  review:
    summary: PEPD gain-of-function mutations impair Nav1.7 fast inactivation, producing
      persistent Na+ current and hyperexcitability that alters action potential firing/propagation
      in sensory neurons.
    action: ACCEPT
    reason: Consistent with Nav1.7's role in conducting/propagating depolarization;
      supported by an experimental electrophysiology study (full text read by curator).
    supported_by:
    - reference_id: PMID:17145499
      supporting_text: Functional analysis in vitro of three of these mutant Na(v)1.7
        channels revealed a reduction in fast inactivation, leading to persistent
        sodium current.
- term:
    id: GO:0098870
    label: action potential propagation
  evidence_type: IDA
  original_reference_id: PMID:7720699
  qualifier: involved_in
  review:
    summary: Cells expressing high levels of hNE-Na (Nav1.7) generated action potentials,
      consistent with the channel's role in initiating and propagating electrical
      signals.
    action: ACCEPT
    reason: Experimentally supported; the channel drives the depolarizing phase required
      for action potential propagation.
    supported_by:
    - reference_id: PMID:7720699
      supporting_text: Action potentials were generated in cells expressing high levels
        of hNE-Na.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:37117223
  qualifier: enables
  review:
    summary: This IPI annotation records the experimentally-demonstrated interaction
      between Nav1.7 and TMEM233 (B4DJY2), a transmembrane protein required for nettle-toxin
      modulation of Nav1.7 gating. The generic "protein binding" term is uninformative
      and does not capture the regulatory nature of this interaction.
    action: MARK_AS_OVER_ANNOTATED
    reason: Per curation guidelines, generic protein binding should be avoided in
      favour of an informative molecular function. The underlying biology is a channel-regulator/auxiliary-protein
      interaction (TMEM233 modulates Nav1.7 gating), but no sufficiently specific
      GO molecular-function term is clearly applicable; the specific interaction partner
      and regulatory role are better captured in notes/SUBUNIT than by this uninformative
      term.
    supported_by:
    - reference_id: PMID:37117223
      supporting_text: Pain-causing stinging nettle toxins target TMEM233 to modulate
        Na(V)1.7 function.
    - reference_id: file:human/SCN9A/SCN9A-deep-research-falcon.md
      supporting_text: identified **TMEM233 (a dispanin-family protein)** as an essential
        **NaV1.7-interacting accessory protein** for the action of the plant-derived
        knottin toxin **Excelsatoxin A (ExTxA)**.
- term:
    id: GO:0030424
    label: axon
  evidence_type: ISS
  original_reference_id: GO_REF:0000024
  qualifier: located_in
  review:
    summary: Sequence-similarity transfer (from rat Pn1/O08562) of axonal localization;
      consistent with experimental human IDA data placing Nav1.7 in axons.
    action: KEEP_AS_NON_CORE
    reason: Accurate location supported by stronger human evidence; non-core relative
      to molecular function and redundant with the IEA axon annotation.
    supported_by:
    - reference_id: PMID:30795902
      supporting_text: localized at the soma membrane, axon, axon
- term:
    id: GO:0005248
    label: voltage-gated sodium channel activity
  evidence_type: IDA
  original_reference_id: PMID:17145499
  qualifier: enables
  review:
    summary: Functional in vitro analysis of PEPD mutant Nav1.7 channels confirmed
      voltage-gated sodium channel activity (with altered fast inactivation in mutants).
    action: ACCEPT
    reason: Direct experimental evidence for the core molecular function.
    supported_by:
    - reference_id: PMID:17145499
      supporting_text: Functional analysis in vitro of three of these mutant Na(v)1.7
        channels revealed a reduction in fast inactivation, leading to persistent
        sodium current.
- term:
    id: GO:0005886
    label: plasma membrane
  evidence_type: IMP
  original_reference_id: PMID:17145499
  qualifier: located_in
  review:
    summary: Functional expression of PEPD mutant channels demonstrates plasma-membrane
      Na+ currents, supporting cell-membrane localization.
    action: ACCEPT
    reason: Correct, experimentally-supported core location.
    supported_by:
    - reference_id: PMID:17145499
      supporting_text: Functional analysis in vitro of three of these mutant Na(v)1.7
        channels revealed a reduction in fast inactivation, leading to persistent
        sodium current.
- term:
    id: GO:0019233
    label: sensory perception of pain
  evidence_type: IMP
  original_reference_id: PMID:17145499
  qualifier: involved_in
  review:
    summary: Gain-of-function SCN9A mutations cause paroxysmal extreme pain disorder,
      directly linking Nav1.7 dysfunction to abnormal pain perception.
    action: ACCEPT
    reason: Human-genetics (mutant-phenotype) evidence for the core pain-perception
      role of Nav1.7.
    supported_by:
    - reference_id: PMID:17145499
      supporting_text: an inherited condition characterized by paroxysms of rectal,
        ocular, or submandibular pain with flushing
core_functions:
- description: Nav1.7 is the pore-forming alpha subunit of a tetrodotoxin-sensitive
    voltage-gated sodium channel that opens on membrane depolarization and selectively
    conducts Na+ down its electrochemical gradient across the plasma membrane, mediating
    the rising/depolarizing phase of the action potential.
  molecular_function:
    id: GO:0005248
    label: voltage-gated sodium channel activity
  directly_involved_in:
  - id: GO:0035725
    label: sodium ion transmembrane transport
  - id: GO:0086010
    label: membrane depolarization during action potential
  locations:
  - id: GO:0005886
    label: plasma membrane
  in_complex:
    id: GO:0001518
    label: voltage-gated sodium channel complex
  substrates:
  - id: CHEBI:29101
    label: sodium(1+)
  supported_by:
  - reference_id: PMID:7720699
    supporting_text: The channel exhibited rapid activation and inactivation kinetics,
      and was blocked by tetrodotoxin and cadmium with IC50 values of 24.5 nM and
      1.1 mM, respectively.
    reference_section_type: ABSTRACT
  - reference_id: PMID:30765606
    supporting_text: Here we report the cryo-electron microscopy structures of the
      human Nav1.7-Ξ²1-Ξ²2 complex
    reference_section_type: ABSTRACT
  - reference_id: file:human/SCN9A/SCN9A-deep-research-falcon.md
    supporting_text: NaV1.7 is selective for Na+ and shares the canonical NaV architecture
      and **DEKA selectivity filter** (Asp-Glu-Lys-Ala across DI-DIV) described for
      eukaryotic NaV alpha subunits.
- description: In peripheral nociceptor (and sympathetic) neurons, Nav1.7 acts as a
    threshold/amplifier channel that boosts subthreshold depolarizations and sets the
    gain for neuronal action potential firing, making it an essential, non-redundant
    determinant of pain sensation. It localizes to the soma membrane, axons, axon/nerve
    terminals, and nodes of Ranvier.
  molecular_function:
    id: GO:0005248
    label: voltage-gated sodium channel activity
  directly_involved_in:
  - id: GO:0019228
    label: neuronal action potential
  - id: GO:0019233
    label: sensory perception of pain
  locations:
  - id: GO:0030424
    label: axon
  - id: GO:0043679
    label: axon terminus
  - id: GO:0033268
    label: node of Ranvier
  supported_by:
  - reference_id: PMID:17167479
    supporting_text: Our data suggest that SCN9A is an essential and non-redundant
      requirement for nociception in humans.
    full_text_unavailable: false
    reference_section_type: ABSTRACT
  - reference_id: PMID:30795902
    supporting_text: neither noxious temperature nor noxious mechanical stimuli were
      felt as painful
    full_text_unavailable: false
    reference_section_type: RESULTS
  - reference_id: PMID:30795902
    supporting_text: NaV1.7 could be seen localized to >90% of nodes of Ranvier in
      myelinated axons
    full_text_unavailable: false
    reference_section_type: RESULTS
  - reference_id: file:human/SCN9A/SCN9A-deep-research-falcon.md
    supporting_text: in nociceptors it is strongly implicated in determining excitability
      near threshold and thereby controlling pain signaling.
proposed_new_terms: []
suggested_questions: []
suggested_experiments: []
references:
- id: GO_REF:0000002
  title: Gene Ontology annotation through association of InterPro records with GO
    terms
  findings: []
- id: GO_REF:0000024
  title: Manual transfer of experimentally-verified manual GO annotation data to orthologs
    by curator judgment of sequence similarity
  findings: []
- id: GO_REF:0000033
  title: Annotation inferences using phylogenetic trees
  findings: []
- id: GO_REF:0000044
  title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location
    vocabulary mapping, accompanied by conservative changes to GO terms applied by
    UniProt
  findings: []
- id: GO_REF:0000107
  title: Automatic transfer of experimentally verified manual GO annotation data to
    orthologs using Ensembl Compara
  findings: []
- id: GO_REF:0000117
  title: Electronic Gene Ontology annotations created by ARBA machine learning models
  findings: []
- id: GO_REF:0000120
  title: Combined Automated Annotation using Multiple IEA Methods
  findings: []
- id: PMID:15385606
  title: Electrophysiological properties of mutant Nav1.7 sodium channels in a painful
    inherited neuropathy.
  findings:
  - statement: Erythromelalgia (PERYTHM) gain-of-function mutations shift Nav1.7 activation
      to more hyperpolarized potentials, supporting cell-membrane localization and
      a role in nociceptor hyperexcitability.
    supporting_text: Electrophysiological properties of mutant Nav1.7 sodium channels
      in a painful inherited neuropathy.
  reference_review:
    relevance: MEDIUM
    correctness: VERIFIED
    review_notes: PubMed-verified; supports plasma-membrane localization and gain-of-function
      mechanism in inherited erythromelalgia.
- id: PMID:17145499
  title: 'SCN9A mutations in paroxysmal extreme pain disorder: allelic variants underlie
    distinct channel defects and phenotypes.'
  findings:
  - statement: PEPD is caused by SCN9A gain-of-function missense mutations that reduce
      Nav1.7 fast inactivation, producing persistent sodium current and linking the
      channel to a heritable pain disorder.
    supporting_text: Functional analysis in vitro of three of these mutant Na(v)1.7
      channels revealed a reduction in fast inactivation, leading to persistent sodium
      current.
  reference_review:
    relevance: HIGH
    correctness: VERIFIED
    review_notes: PubMed-verified abstract; establishes Nav1.7 channel activity and
      pain-perception role via PEPD gain-of-function mutations.
- id: PMID:17167479
  title: An SCN9A channelopathy causes congenital inability to experience pain.
  findings:
  - statement: Biallelic SCN9A nonsense mutations (S459X, I767X, W897X) cause complete
      loss of Nav1.7 function and congenital inability to perceive pain, with all
      other sensory modalities preserved.
    supporting_text: Our data suggest that SCN9A is an essential and non-redundant
      requirement for nociception in humans.
  - statement: Nav1.7 is the alpha-subunit of a TTX-sensitive voltage-gated sodium
      channel strongly expressed in nociceptive DRG neurons.
    supporting_text: encoding the alpha-subunit of the voltage-gated sodium channel,
      Na(v)1.7, which is strongly expressed in nociceptive neurons
  reference_review:
    relevance: HIGH
    correctness: VERIFIED
    review_notes: PubMed-verified, full text available; decisive loss-of-function
      human genetics for the core pain-perception role.
- id: PMID:19369487
  title: 'Early- and late-onset inherited erythromelalgia: genotype-phenotype correlation.'
  findings:
  - statement: Inherited erythromelalgia gain-of-function Nav1.7 mutations correlate
      with age of onset, supporting cell-membrane localization and the channel's role
      in pain.
    supporting_text: 'Early- and late-onset inherited erythromelalgia: genotype-phenotype
      correlation.'
  reference_review:
    relevance: MEDIUM
    correctness: VERIFIED
    review_notes: PubMed-verified abstract-only; supports plasma-membrane localization
      via EXP annotation.
- id: PMID:24311784
  title: 'Inherited pain: sodium channel Nav1.7 A1632T mutation causes erythromelalgia
    due to a shift of fast inactivation.'
  findings:
  - statement: The A1632T erythromelalgia mutation alters Nav1.7 fast inactivation,
      a gain-of-function mechanism, with the channel expressed at the cell membrane.
    supporting_text: 'sodium channel Nav1.7 A1632T mutation causes erythromelalgia
      due to a shift of fast inactivation'
  reference_review:
    relevance: MEDIUM
    correctness: VERIFIED
    review_notes: PubMed-verified; supports plasma-membrane localization and gain-of-function
      mechanism.
- id: PMID:25240195
  title: Protein kinase C enhances human sodium channel hNav1.7 resurgent currents
    via a serine residue in the domain III-IV linker.
  findings:
  - statement: PKC phosphorylation at Ser-1490 in the domain III-IV linker enhances
      Nav1.7 resurgent sodium currents, modulating the membrane-resident channel.
    supporting_text: Protein kinase C enhances human sodium channel hNav1.7 resurgent
      currents via a serine residue in the domain III-IV linker.
  reference_review:
    relevance: MEDIUM
    correctness: VERIFIED
    review_notes: PubMed-verified; supports plasma-membrane localization and post-translational
      regulation of channel activity.
- id: PMID:26680203
  title: Structural basis of Nav1.7 inhibition by an isoform-selective small-molecule
    antagonist.
  findings:
  - statement: Crystallographic study of a Nav1.7 voltage-sensor domain bound by an
      isoform-selective antagonist, consistent with the channel as a membrane-embedded
      drug target.
    supporting_text: Structural basis of Nav1.7 inhibition by an isoform-selective
      small-molecule antagonist.
  reference_review:
    relevance: MEDIUM
    correctness: VERIFIED
    review_notes: PubMed-verified abstract-only; supports plasma-membrane localization
      and channel pharmacology.
- id: PMID:30765606
  title: Structures of human Na(v)1.7 channel in complex with auxiliary subunits and
    animal toxins.
  findings:
  - statement: Cryo-EM structures show human Nav1.7 alpha subunit assembled with auxiliary
      beta subunits (SCN1B/SCN2B) into the voltage-gated sodium channel complex, a
      multi-pass membrane protein.
    supporting_text: Here we report the cryo-electron microscopy structures of the
      human Nav1.7-Ξ²1-Ξ²2 complex
  reference_review:
    relevance: HIGH
    correctness: VERIFIED
    review_notes: PubMed-verified; structural basis for VGSC complex membership and
      membrane-depolarization function.
- id: PMID:30795902
  title: Defining the Functional Role of Na(V)1.7 in Human Nociception.
  findings:
  - statement: In CIP participants with biallelic loss-of-function SCN9A mutations,
      noxious thermal and mechanical stimuli are not perceived as painful, while mechanical/vibration
      detection thresholds remain normal.
    supporting_text: neither noxious temperature nor noxious mechanical stimuli were
      felt as painful
  - statement: CRISPR-tagged endogenous Nav1.7 localizes to the soma membrane, axons,
      axon terminals, and >90% of nodes of Ranvier in human iPSC-derived nociceptors.
    supporting_text: NaV1.7 could be seen localized to >90% of nodes of Ranvier in
      myelinated axons
  reference_review:
    relevance: HIGH
    correctness: VERIFIED
    review_notes: PubMed-verified, full text available; primary human evidence for
      neuronal action potential, pain perception, and subcellular localization (node
      of Ranvier, axon terminus).
- id: PMID:37117223
  title: Pain-causing stinging nettle toxins target TMEM233 to modulate Na(V)1.7 function.
  findings:
  - statement: Nav1.7 interacts with the transmembrane protein TMEM233 (B4DJY2), which
      modulates channel gating; this is the basis of the GO:0005515 protein binding
      annotation.
    supporting_text: Pain-causing stinging nettle toxins target TMEM233 to modulate
      Na(V)1.7 function.
  reference_review:
    relevance: MEDIUM
    correctness: VERIFIED
    review_notes: PubMed-verified, full text available; underlying interaction (TMEM233)
      is real but the generic protein binding term is uninformative.
- id: PMID:7720699
  title: Structure and functional expression of a new member of the tetrodotoxin-sensitive
    voltage-activated sodium channel family from human neuroendocrine cells.
  findings:
  - statement: hNE-Na (Nav1.7) is a 1977-aa TTX-sensitive voltage-activated sodium
      channel; heterologous expression yields rapidly activating/inactivating Na+
      currents and generates action potentials.
    supporting_text: The channel exhibited rapid activation and inactivation kinetics,
      and was blocked by tetrodotoxin and cadmium with IC50 values of 24.5 nM and
      1.1 mM, respectively.
  - statement: SCN9A transcripts are not detectable in heart, indicating Nav1.7 is
      not a cardiac sodium channel.
    supporting_text: Transcripts were not identified in pituitary gland, brain, heart,
      liver or kidney
  reference_review:
    relevance: HIGH
    correctness: VERIFIED
    review_notes: PubMed-verified abstract-only; founding functional study establishing
      channel activity, plasma-membrane localization, and absence from heart.
- id: file:human/SCN9A/SCN9A-deep-research-falcon.md
  title: Falcon deep research report for human SCN9A
  findings:
  - statement: Falcon deep research affirms the core molecular function as a voltage-gated
      Na+ channel selective for Na+ via the canonical DEKA selectivity filter (Asp-Glu-Lys-Ala
      across DI-DIV), supporting the GO:0005248 / GO:0005261 annotations.
    supporting_text: NaV1.7 is selective for Na+ and shares the canonical NaV architecture
      and **DEKA selectivity filter** (Asp-Glu-Lys-Ala across DI-DIV) described for
      eukaryotic NaV alpha subunits.
  - statement: Falcon deep research frames Nav1.7 as a nociceptor "threshold channel"
      enriched at the plasma membrane of DRG, trigeminal and sympathetic ganglion
      neurons, consistent with the sensory-perception-of-pain and plasma-membrane annotations.
    supporting_text: NaV1.7 is a **plasma-membrane** channel enriched in **nociceptive
      neurons**, with high expression reported in **dorsal root ganglia (DRG)**, **trigeminal
      ganglia**, and **sympathetic ganglia**.
  - statement: Falcon deep research corroborates that TMEM233 (a dispanin-family protein)
      is an essential Nav1.7-interacting accessory protein, supporting the regulatory
      interpretation of the GO:0005515 (TMEM233) annotation rather than generic protein binding.
    supporting_text: identified **TMEM233 (a dispanin-family protein)** as an essential
      **NaV1.7-interacting accessory protein** for the action of the plant-derived
      knottin toxin **Excelsatoxin A (ExTxA)**.
  - statement: Falcon deep research highlights regulation of Nav1.7 surface density
      by NEDD4L-mediated ubiquitination of a C-terminal PY motif - a trafficking/turnover
      regulatory axis (consistent with the UniProt NEDD4/NEDD4L SUBUNIT note) that is
      not captured by any current GOA annotation.
    supporting_text: the E3 ligase **NEDD4L ubiquitinates the cytoplasmic C-terminus
      of NaV1.7** ... **post-translational modification and trafficking/turnover regulation**
      are likely important determinants of NaV1.7 surface density and nociceptor excitability.
  reference_review:
    relevance: MEDIUM
    correctness: VERIFIED
    review_notes: LLM-generated literature synthesis (Edison/falcon); used only as
      corroborating context. Its core-function, localization, and TMEM233-accessory
      claims are consistent with the primary literature and UniProt cited elsewhere
      in this review; the NEDD4L/trafficking point is supported by UniProt's curated
      SUBUNIT annotation (interaction with NEDD4/NEDD4L).