SLC25A19 is the mitochondrial thiamine pyrophosphate carrier (MTPPT), a multi-pass protein of the SLC25 mitochondrial carrier family embedded in the mitochondrial inner membrane. It imports thiamine pyrophosphate (TPP/ThPP, the activated cofactor form of vitamin B1) from the cytosol into the mitochondrial matrix, operating as an exchanger that couples TPP uptake to thiamine monophosphate efflux. Because mitochondria cannot synthesize TPP, this carrier supplies the essential cofactor for matrix TPP-dependent enzyme complexes, including the pyruvate dehydrogenase, 2-oxoglutarate (alpha-ketoglutarate) dehydrogenase, and branched-chain 2-oxo-acid dehydrogenase complexes, and is thereby required for oxidative energy metabolism and TCA-cycle flux. The gene was originally described as a mitochondrial deoxynucleotide carrier (DNC), but knockout and transport studies established that its physiological substrate is thiamine pyrophosphate rather than deoxynucleotides. Loss-of-function mutations cause Amish lethal microcephaly (with 2-oxoglutaric aciduria) and thiamine metabolism dysfunction syndrome 4 (bilateral striatal necrosis with progressive polyneuropathy).
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0005739
mitochondrion
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phylogenetic (IBA) localization to mitochondrion. Correct but a broad parent of the specific inner-membrane location; kept as supporting the mitochondrial residence, with the mitochondrial inner membrane annotation carried as the more precise core location.
Supporting Evidence:
file:human/SLC25A19/SLC25A19-uniprot.txt
SUBCELLULAR LOCATION: Mitochondrion membrane
|
|
GO:0005743
mitochondrial inner membrane
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phylogenetic (IBA) localization to the mitochondrial inner membrane. This is the correct, specific location for a functional SLC25 carrier and is consistent with the experimental mitochondrial-membrane and multipass evidence. Core cellular component.
Supporting Evidence:
file:human/SLC25A19/SLC25A19-uniprot.txt
Multi-pass membrane protein
|
|
GO:0090422
thiamine pyrophosphate transmembrane transporter activity
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phylogenetic (IBA) assignment of the specific molecular function, thiamine pyrophosphate transmembrane transporter activity. This matches the experimentally established physiological function and is the core MF.
Supporting Evidence:
file:human/SLC25A19/SLC25A19-uniprot.txt
Mitochondrial transporter mediating uptake of thiamine
|
|
GO:0030974
thiamine pyrophosphate transmembrane transport
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phylogenetic (IBA) assignment of the biological process, thiamine pyrophosphate transmembrane transport. Consistent with experimental data; core biological process.
Supporting Evidence:
PMID:17035501
We conclude that SLC25A19 transports ThPP
|
|
GO:0005739
mitochondrion
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Electronic (ARBA) localization to mitochondrion, matching the UniProt subcellular location. Redundant with the more specific mitochondrial inner membrane location and with experimental mitochondrial annotations, but correct and supporting the core localization.
Supporting Evidence:
file:human/SLC25A19/SLC25A19-uniprot.txt
SUBCELLULAR LOCATION: Mitochondrion membrane
|
|
GO:0015932
nucleobase-containing compound transmembrane transporter activity
|
IEA
GO_REF:0000117 |
REMOVE |
Summary: Electronic (ARBA) molecular-function prediction of nucleobase-containing compound transmembrane transporter activity. This is a wrong-substrate over-prediction rooted in the obsolete "deoxynucleotide carrier" view of SLC25A19. The physiological substrate is thiamine pyrophosphate, not nucleotides, and GOA carries explicit NOT annotations against deoxynucleotide transporter activity. Remove this electronic annotation.
Supporting Evidence:
file:human/SLC25A19/SLC25A19-uniprot.txt
Previously identified as the mitochondrial deoxyribonucleotide
PMID:15539640
DNC does not play an important role in the delayed
|
|
GO:0031966
mitochondrial membrane
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: Electronic subcellular-location mapping to mitochondrial membrane, matching the UniProt SUBCELLULAR LOCATION and the experimental mitochondrial-membrane annotations. Correct; less precise than mitochondrial inner membrane.
Supporting Evidence:
file:human/SLC25A19/SLC25A19-uniprot.txt
SUBCELLULAR LOCATION: Mitochondrion membrane
|
|
GO:0042723
thiamine-containing compound metabolic process
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: Electronic (ARBA) assignment of the broad process thiamine-containing compound metabolic process. True at a high level (TPP transport is part of thiamine metabolism) but much less informative than the specific TPP transport process; non-core.
Supporting Evidence:
PMID:17035501
We conclude that SLC25A19 transports ThPP
|
|
GO:0055085
transmembrane transport
|
IEA
GO_REF:0000002 |
KEEP AS NON CORE |
Summary: Electronic (InterPro2GO) assignment of the generic process transmembrane transport from the mitochondrial carrier domain signature. Correct broad parent of the specific TPP transport process; non-core.
Supporting Evidence:
PMID:27188525
uptake of TPP by mitochondria
|
|
GO:0090422
thiamine pyrophosphate transmembrane transporter activity
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Electronic (ARBA) assignment of the specific molecular function, matching the experimentally established TPP transporter activity. Correct; the experimental (IDA) instance of this same term is the core annotation.
Supporting Evidence:
file:human/SLC25A19/SLC25A19-uniprot.txt
Mitochondrial transporter mediating uptake of thiamine
|
|
GO:0042723
thiamine-containing compound metabolic process
|
TAS
Reactome:R-HSA-196819 |
KEEP AS NON CORE |
Summary: Reactome (TAS) placement of SLC25A19 within vitamin B1 (thiamin) metabolism. Correct pathway context but a broad process relative to the specific TPP transport function; non-core.
Supporting Evidence:
Reactome:R-HSA-196819
thiamin is converted into the coenzyme thiamin pyrophosphate
|
|
GO:0005739
mitochondrion
|
IDA
GO_REF:0000052 |
ACCEPT |
Summary: HPA immunofluorescence (IDA) localization to mitochondrion. Consistent with the established mitochondrial residence. Correct but less precise than the inner-membrane location; supports the core localization.
Supporting Evidence:
file:human/SLC25A19/SLC25A19-uniprot.txt
SUBCELLULAR LOCATION: Mitochondrion membrane
|
|
GO:0031966
mitochondrial membrane
|
EXP
PMID:15539640 Expression of deoxynucleotide carrier is not associated with... |
ACCEPT |
Summary: Experimental localization to the mitochondrial membrane. Consistent with SLC25A19 being an inner-membrane carrier. Correct; less precise than mitochondrial inner membrane.
Supporting Evidence:
file:human/SLC25A19/SLC25A19-uniprot.txt
SUBCELLULAR LOCATION: Mitochondrion membrane
|
|
GO:0031966
mitochondrial membrane
|
EXP
PMID:27188525 Structure-function characterization of the human mitochondri... |
ACCEPT |
Summary: Experimental localization to the mitochondrial membrane (GFP-tagged hMTPPT delivered to mitochondria in HepG2 cells; TPP uptake by isolated mitochondria). Correct; less precise than mitochondrial inner membrane.
Supporting Evidence:
PMID:27188525
delivery of the protein to mitochondria
|
|
GO:0031966
mitochondrial membrane
|
EXP
PMID:31506564 Functional analysis of the third identified SLC25A19 mutatio... |
ACCEPT |
Summary: Experimental localization to the mitochondrial membrane (WT and Q192H hMTPPT expression and mitochondrial isolation in HepG2 cells). Correct; less precise than mitochondrial inner membrane.
Supporting Evidence:
PMID:31506564
Mitochondria were isolated from HepG2 cells stably expressing WT hMTPPT
|
|
GO:0005739
mitochondrion
|
HTP
PMID:34800366 Quantitative high-confidence human mitochondrial proteome an... |
ACCEPT |
Summary: High-throughput mitochondrial proteomics places SLC25A19 in the high-confidence human mitochondrial proteome (MitoCoP). Corroborates the mitochondrial localization.
Supporting Evidence:
PMID:34800366
mitochondrial high-confidence proteome of >1,100 proteins (MitoCoP)
|
|
GO:0005739
mitochondrion
|
IDA
PMID:15539640 Expression of deoxynucleotide carrier is not associated with... |
ACCEPT |
Summary: Direct experimental (IDA) mitochondrial localization. Supports the core mitochondrial residence; less precise than the inner-membrane location.
Supporting Evidence:
file:human/SLC25A19/SLC25A19-uniprot.txt
SUBCELLULAR LOCATION: Mitochondrion membrane
|
|
GO:0030233
deoxynucleotide transmembrane transporter activity
|
IDA
NOT
PMID:15539640 Expression of deoxynucleotide carrier is not associated with... |
ACCEPT |
Summary: NOT annotation: experimental evidence shows SLC25A19 (DNC) does not function physiologically as a deoxynucleotide transporter. Reconstituted DNC transported dNTPs only at millimolar Km (~1000x above physiological), and DNC over-expression/knockdown did not affect mitochondrial dNTP uptake or mtDNA depletion. Correctly recorded as a negated annotation.
Supporting Evidence:
PMID:15539640
DNC does not play an important role in the delayed
PMID:15539640
which is a thousandfold higher than that of the
|
|
GO:0030233
deoxynucleotide transmembrane transporter activity
|
IDA
NOT
PMID:17035501 Knockout of Slc25a19 causes mitochondrial thiamine pyrophosp... |
ACCEPT |
Summary: NOT annotation supported by the Slc25a19 knockout mouse: mitochondrial ribo- and deoxyribonucleoside triphosphate levels were normal and no mtDNA depletion occurred, showing deoxynucleotide transport is not the primary function. Correctly recorded as negated.
Supporting Evidence:
PMID:17035501
normal mitochondrial ribo- and deoxyribonucleoside triphosphate levels
|
|
GO:0030302
deoxynucleotide transport
|
IDA
NOT
PMID:15539640 Expression of deoxynucleotide carrier is not associated with... |
ACCEPT |
Summary: NOT annotation: SLC25A19 is not physiologically involved in deoxynucleotide transport (no effect on mitochondrial dNTP uptake or mtDNA maintenance). Correctly recorded as negated.
Supporting Evidence:
PMID:15539640
DNC does not play an important role in the delayed
|
|
GO:0030974
thiamine pyrophosphate transmembrane transport
|
IDA
PMID:17035501 Knockout of Slc25a19 causes mitochondrial thiamine pyrophosp... |
ACCEPT |
Summary: Direct experimental evidence that SLC25A19 mediates thiamine pyrophosphate transport: reconstituted protein exchanged TPP, and knockout cells had undetectable mitochondrial ThPP. Core biological process.
Supporting Evidence:
PMID:17035501
We conclude that SLC25A19 transports ThPP
|
|
GO:0090422
thiamine pyrophosphate transmembrane transporter activity
|
IDA
PMID:17035501 Knockout of Slc25a19 causes mitochondrial thiamine pyrophosp... |
ACCEPT |
Summary: Direct experimental evidence for TPP transmembrane transporter activity (reconstituted recombinant protein exchange assay; ThPP transport confirmed). This is the core molecular function of SLC25A19.
Supporting Evidence:
PMID:17035501
confirmed it by using transport assays of the recombinant reconstituted protein
|
|
GO:0005739
mitochondrion
|
IDA
PMID:31506564 Functional analysis of the third identified SLC25A19 mutatio... |
ACCEPT |
Summary: Direct experimental (IDA) mitochondrial localization from the THMD4 functional study (WT and mutant hMTPPT expression and mitochondrial isolation). Supports the core mitochondrial localization.
Supporting Evidence:
PMID:31506564
expression of the mutant hMTPPT protein in mitochondria
|
|
GO:0090422
thiamine pyrophosphate transmembrane transporter activity
|
TAS
Reactome:R-HSA-8875838 |
ACCEPT |
Summary: Reactome (TAS) assertion of the core TPP transporter activity, describing transport of ThDP from cytosol to the mitochondrial matrix. Consistent with the experimental evidence; supports the core MF.
Supporting Evidence:
Reactome:R-HSA-8875838
transporter of thiamine pyrophosphate (ThDP) into mitochondria
|
|
GO:0005743
mitochondrial inner membrane
|
TAS
Reactome:R-HSA-8875838 |
ACCEPT |
Summary: Reactome (TAS) localization to the mitochondrial inner membrane, the specific and correct location for this SLC25 carrier. Core cellular component.
Supporting Evidence:
Reactome:R-HSA-8875838
transporter of thiamine pyrophosphate (ThDP) into mitochondria
|
|
GO:0005634
nucleus
|
HDA
PMID:21630459 Proteomic characterization of the human sperm nucleus. |
KEEP AS NON CORE |
Summary: High-throughput (HDA) nucleus assignment from a human sperm-nucleus proteome. For a mitochondrial inner-membrane carrier this is almost certainly a proteomic contaminant rather than a functional nuclear localization, and it is not supported by any targeted evidence. Retained as non-core (high-throughput, not removed) but flagged as unlikely to be biologically meaningful.
Supporting Evidence:
PMID:21630459
several chromatin-related proteins, such as zinc fingers and
|
|
GO:0030302
deoxynucleotide transport
|
NAS
PMID:11226231 The human mitochondrial deoxynucleotide carrier and its role... |
MARK AS OVER ANNOTATED |
Summary: Author-statement (NAS) that SLC25A19/DNC mediates deoxynucleotide transport, from the original characterization paper. This reflects the obsolete "deoxynucleotide carrier" interpretation that was subsequently overturned; GOA now records explicit NOT annotations against deoxynucleotide transport. Over-annotated relative to the corrected physiological function (TPP transport).
Supporting Evidence:
file:human/SLC25A19/SLC25A19-uniprot.txt
Previously identified as the mitochondrial deoxyribonucleotide
PMID:17035501
normal mitochondrial ribo- and deoxyribonucleoside triphosphate levels
|
|
GO:0030233
deoxynucleotide transmembrane transporter activity
|
TAS
PMID:11226231 The human mitochondrial deoxynucleotide carrier and its role... |
MARK AS OVER ANNOTATED |
Summary: Author/TAS assignment of deoxynucleotide transmembrane transporter activity from the original DNC characterization. Reconstituted transport was observed in vitro but only at non-physiological (millimolar) Km, and the physiological function was later established as TPP transport; GOA carries explicit NOT annotations against this activity. Over-annotated; not the physiological molecular function.
Supporting Evidence:
file:human/SLC25A19/SLC25A19-uniprot.txt
SLC25A19 is a thiamine diphosphate transporter and not a
PMID:15539640
which is a thousandfold higher than that of the
|
id: Q9HC21
gene_symbol: SLC25A19
product_type: PROTEIN
status: INITIALIZED
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: >-
SLC25A19 is the mitochondrial thiamine pyrophosphate carrier (MTPPT), a
multi-pass protein of the SLC25 mitochondrial carrier family embedded in the
mitochondrial inner membrane. It imports thiamine pyrophosphate (TPP/ThPP, the
activated cofactor form of vitamin B1) from the cytosol into the mitochondrial
matrix, operating as an exchanger that couples TPP uptake to thiamine
monophosphate efflux. Because mitochondria cannot synthesize TPP, this carrier
supplies the essential cofactor for matrix TPP-dependent enzyme complexes,
including the pyruvate dehydrogenase, 2-oxoglutarate (alpha-ketoglutarate)
dehydrogenase, and branched-chain 2-oxo-acid dehydrogenase complexes, and is
thereby required for oxidative energy metabolism and TCA-cycle flux. The gene
was originally described as a mitochondrial deoxynucleotide carrier (DNC), but
knockout and transport studies established that its physiological substrate is
thiamine pyrophosphate rather than deoxynucleotides. Loss-of-function
mutations cause Amish lethal microcephaly (with 2-oxoglutaric aciduria) and
thiamine metabolism dysfunction syndrome 4 (bilateral striatal necrosis with
progressive polyneuropathy).
alternative_products:
- name: '1'
id: Q9HC21-1
- name: '2'
id: Q9HC21-2
sequence_note: VSP_053908
existing_annotations:
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: >-
Phylogenetic (IBA) localization to mitochondrion. Correct but a broad
parent of the specific inner-membrane location; kept as supporting the
mitochondrial residence, with the mitochondrial inner membrane annotation
carried as the more precise core location.
action: ACCEPT
supported_by:
- reference_id: file:human/SLC25A19/SLC25A19-uniprot.txt
supporting_text: >-
SUBCELLULAR LOCATION: Mitochondrion membrane
- term:
id: GO:0005743
label: mitochondrial inner membrane
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: >-
Phylogenetic (IBA) localization to the mitochondrial inner membrane. This
is the correct, specific location for a functional SLC25 carrier and is
consistent with the experimental mitochondrial-membrane and multipass
evidence. Core cellular component.
action: ACCEPT
supported_by:
- reference_id: file:human/SLC25A19/SLC25A19-uniprot.txt
supporting_text: >-
Multi-pass membrane protein
- term:
id: GO:0090422
label: thiamine pyrophosphate transmembrane transporter activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: >-
Phylogenetic (IBA) assignment of the specific molecular function, thiamine
pyrophosphate transmembrane transporter activity. This matches the
experimentally established physiological function and is the core MF.
action: ACCEPT
supported_by:
- reference_id: file:human/SLC25A19/SLC25A19-uniprot.txt
supporting_text: >-
Mitochondrial transporter mediating uptake of thiamine
- term:
id: GO:0030974
label: thiamine pyrophosphate transmembrane transport
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: >-
Phylogenetic (IBA) assignment of the biological process, thiamine
pyrophosphate transmembrane transport. Consistent with experimental data;
core biological process.
action: ACCEPT
supported_by:
- reference_id: PMID:17035501
supporting_text: >-
We conclude that SLC25A19 transports ThPP
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: located_in
review:
summary: >-
Electronic (ARBA) localization to mitochondrion, matching the UniProt
subcellular location. Redundant with the more specific mitochondrial inner
membrane location and with experimental mitochondrial annotations, but
correct and supporting the core localization.
action: ACCEPT
supported_by:
- reference_id: file:human/SLC25A19/SLC25A19-uniprot.txt
supporting_text: >-
SUBCELLULAR LOCATION: Mitochondrion membrane
- term:
id: GO:0015932
label: nucleobase-containing compound transmembrane transporter activity
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: enables
review:
summary: >-
Electronic (ARBA) molecular-function prediction of nucleobase-containing
compound transmembrane transporter activity. This is a wrong-substrate
over-prediction rooted in the obsolete "deoxynucleotide carrier" view of
SLC25A19. The physiological substrate is thiamine pyrophosphate, not
nucleotides, and GOA carries explicit NOT annotations against
deoxynucleotide transporter activity. Remove this electronic annotation.
action: REMOVE
supported_by:
- reference_id: file:human/SLC25A19/SLC25A19-uniprot.txt
supporting_text: >-
Previously identified as the mitochondrial deoxyribonucleotide
- reference_id: PMID:15539640
supporting_text: >-
DNC does not play an important role in the delayed
- term:
id: GO:0031966
label: mitochondrial membrane
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: >-
Electronic subcellular-location mapping to mitochondrial membrane,
matching the UniProt SUBCELLULAR LOCATION and the experimental
mitochondrial-membrane annotations. Correct; less precise than
mitochondrial inner membrane.
action: ACCEPT
supported_by:
- reference_id: file:human/SLC25A19/SLC25A19-uniprot.txt
supporting_text: >-
SUBCELLULAR LOCATION: Mitochondrion membrane
- term:
id: GO:0042723
label: thiamine-containing compound metabolic process
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: >-
Electronic (ARBA) assignment of the broad process thiamine-containing
compound metabolic process. True at a high level (TPP transport is part of
thiamine metabolism) but much less informative than the specific TPP
transport process; non-core.
action: KEEP_AS_NON_CORE
supported_by:
- reference_id: PMID:17035501
supporting_text: >-
We conclude that SLC25A19 transports ThPP
- term:
id: GO:0055085
label: transmembrane transport
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: involved_in
review:
summary: >-
Electronic (InterPro2GO) assignment of the generic process transmembrane
transport from the mitochondrial carrier domain signature. Correct broad
parent of the specific TPP transport process; non-core.
action: KEEP_AS_NON_CORE
supported_by:
- reference_id: PMID:27188525
supporting_text: >-
uptake of TPP by mitochondria
- term:
id: GO:0090422
label: thiamine pyrophosphate transmembrane transporter activity
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: enables
review:
summary: >-
Electronic (ARBA) assignment of the specific molecular function, matching
the experimentally established TPP transporter activity. Correct; the
experimental (IDA) instance of this same term is the core annotation.
action: ACCEPT
supported_by:
- reference_id: file:human/SLC25A19/SLC25A19-uniprot.txt
supporting_text: >-
Mitochondrial transporter mediating uptake of thiamine
- term:
id: GO:0042723
label: thiamine-containing compound metabolic process
evidence_type: TAS
original_reference_id: Reactome:R-HSA-196819
qualifier: involved_in
review:
summary: >-
Reactome (TAS) placement of SLC25A19 within vitamin B1 (thiamin)
metabolism. Correct pathway context but a broad process relative to the
specific TPP transport function; non-core.
action: KEEP_AS_NON_CORE
supported_by:
- reference_id: Reactome:R-HSA-196819
supporting_text: >-
thiamin is converted into the coenzyme thiamin pyrophosphate
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IDA
original_reference_id: GO_REF:0000052
qualifier: located_in
review:
summary: >-
HPA immunofluorescence (IDA) localization to mitochondrion. Consistent
with the established mitochondrial residence. Correct but less precise
than the inner-membrane location; supports the core localization.
action: ACCEPT
supported_by:
- reference_id: file:human/SLC25A19/SLC25A19-uniprot.txt
supporting_text: >-
SUBCELLULAR LOCATION: Mitochondrion membrane
- term:
id: GO:0031966
label: mitochondrial membrane
evidence_type: EXP
original_reference_id: PMID:15539640
qualifier: located_in
review:
summary: >-
Experimental localization to the mitochondrial membrane. Consistent with
SLC25A19 being an inner-membrane carrier. Correct; less precise than
mitochondrial inner membrane.
action: ACCEPT
supported_by:
- reference_id: file:human/SLC25A19/SLC25A19-uniprot.txt
supporting_text: >-
SUBCELLULAR LOCATION: Mitochondrion membrane
- term:
id: GO:0031966
label: mitochondrial membrane
evidence_type: EXP
original_reference_id: PMID:27188525
qualifier: located_in
review:
summary: >-
Experimental localization to the mitochondrial membrane (GFP-tagged
hMTPPT delivered to mitochondria in HepG2 cells; TPP uptake by isolated
mitochondria). Correct; less precise than mitochondrial inner membrane.
action: ACCEPT
supported_by:
- reference_id: PMID:27188525
supporting_text: >-
delivery of the protein to mitochondria
- term:
id: GO:0031966
label: mitochondrial membrane
evidence_type: EXP
original_reference_id: PMID:31506564
qualifier: located_in
review:
summary: >-
Experimental localization to the mitochondrial membrane (WT and Q192H
hMTPPT expression and mitochondrial isolation in HepG2 cells). Correct;
less precise than mitochondrial inner membrane.
action: ACCEPT
supported_by:
- reference_id: PMID:31506564
supporting_text: >-
Mitochondria were isolated from HepG2 cells stably expressing WT hMTPPT
- term:
id: GO:0005739
label: mitochondrion
evidence_type: HTP
original_reference_id: PMID:34800366
qualifier: located_in
review:
summary: >-
High-throughput mitochondrial proteomics places SLC25A19 in the
high-confidence human mitochondrial proteome (MitoCoP). Corroborates the
mitochondrial localization.
action: ACCEPT
supported_by:
- reference_id: PMID:34800366
supporting_text: >-
mitochondrial high-confidence proteome of >1,100 proteins (MitoCoP)
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IDA
original_reference_id: PMID:15539640
qualifier: located_in
review:
summary: >-
Direct experimental (IDA) mitochondrial localization. Supports the core
mitochondrial residence; less precise than the inner-membrane location.
action: ACCEPT
supported_by:
- reference_id: file:human/SLC25A19/SLC25A19-uniprot.txt
supporting_text: >-
SUBCELLULAR LOCATION: Mitochondrion membrane
- term:
id: GO:0030233
label: deoxynucleotide transmembrane transporter activity
evidence_type: IDA
original_reference_id: PMID:15539640
qualifier: enables
negated: true
review:
summary: >-
NOT annotation: experimental evidence shows SLC25A19 (DNC) does not
function physiologically as a deoxynucleotide transporter. Reconstituted
DNC transported dNTPs only at millimolar Km (~1000x above physiological),
and DNC over-expression/knockdown did not affect mitochondrial dNTP
uptake or mtDNA depletion. Correctly recorded as a negated annotation.
action: ACCEPT
supported_by:
- reference_id: PMID:15539640
supporting_text: >-
DNC does not play an important role in the delayed
- reference_id: PMID:15539640
supporting_text: >-
which is a thousandfold higher than that of the
- term:
id: GO:0030233
label: deoxynucleotide transmembrane transporter activity
evidence_type: IDA
original_reference_id: PMID:17035501
qualifier: enables
negated: true
review:
summary: >-
NOT annotation supported by the Slc25a19 knockout mouse: mitochondrial
ribo- and deoxyribonucleoside triphosphate levels were normal and no mtDNA
depletion occurred, showing deoxynucleotide transport is not the primary
function. Correctly recorded as negated.
action: ACCEPT
supported_by:
- reference_id: PMID:17035501
supporting_text: >-
normal mitochondrial ribo- and deoxyribonucleoside triphosphate levels
- term:
id: GO:0030302
label: deoxynucleotide transport
evidence_type: IDA
original_reference_id: PMID:15539640
qualifier: involved_in
negated: true
review:
summary: >-
NOT annotation: SLC25A19 is not physiologically involved in
deoxynucleotide transport (no effect on mitochondrial dNTP uptake or
mtDNA maintenance). Correctly recorded as negated.
action: ACCEPT
supported_by:
- reference_id: PMID:15539640
supporting_text: >-
DNC does not play an important role in the delayed
- term:
id: GO:0030974
label: thiamine pyrophosphate transmembrane transport
evidence_type: IDA
original_reference_id: PMID:17035501
qualifier: involved_in
review:
summary: >-
Direct experimental evidence that SLC25A19 mediates thiamine pyrophosphate
transport: reconstituted protein exchanged TPP, and knockout cells had
undetectable mitochondrial ThPP. Core biological process.
action: ACCEPT
supported_by:
- reference_id: PMID:17035501
supporting_text: >-
We conclude that SLC25A19 transports ThPP
- term:
id: GO:0090422
label: thiamine pyrophosphate transmembrane transporter activity
evidence_type: IDA
original_reference_id: PMID:17035501
qualifier: enables
review:
summary: >-
Direct experimental evidence for TPP transmembrane transporter activity
(reconstituted recombinant protein exchange assay; ThPP transport
confirmed). This is the core molecular function of SLC25A19.
action: ACCEPT
supported_by:
- reference_id: PMID:17035501
supporting_text: >-
confirmed it by using transport assays of the recombinant reconstituted protein
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IDA
original_reference_id: PMID:31506564
qualifier: located_in
review:
summary: >-
Direct experimental (IDA) mitochondrial localization from the THMD4
functional study (WT and mutant hMTPPT expression and mitochondrial
isolation). Supports the core mitochondrial localization.
action: ACCEPT
supported_by:
- reference_id: PMID:31506564
supporting_text: >-
expression of the mutant hMTPPT protein in mitochondria
- term:
id: GO:0090422
label: thiamine pyrophosphate transmembrane transporter activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8875838
qualifier: enables
review:
summary: >-
Reactome (TAS) assertion of the core TPP transporter activity, describing
transport of ThDP from cytosol to the mitochondrial matrix. Consistent
with the experimental evidence; supports the core MF.
action: ACCEPT
supported_by:
- reference_id: Reactome:R-HSA-8875838
supporting_text: >-
transporter of thiamine pyrophosphate (ThDP) into mitochondria
- term:
id: GO:0005743
label: mitochondrial inner membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8875838
qualifier: located_in
review:
summary: >-
Reactome (TAS) localization to the mitochondrial inner membrane, the
specific and correct location for this SLC25 carrier. Core cellular
component.
action: ACCEPT
supported_by:
- reference_id: Reactome:R-HSA-8875838
supporting_text: >-
transporter of thiamine pyrophosphate (ThDP) into mitochondria
- term:
id: GO:0005634
label: nucleus
evidence_type: HDA
original_reference_id: PMID:21630459
qualifier: located_in
review:
summary: >-
High-throughput (HDA) nucleus assignment from a human sperm-nucleus
proteome. For a mitochondrial inner-membrane carrier this is almost
certainly a proteomic contaminant rather than a functional nuclear
localization, and it is not supported by any targeted evidence. Retained
as non-core (high-throughput, not removed) but flagged as unlikely to be
biologically meaningful.
action: KEEP_AS_NON_CORE
supported_by:
- reference_id: PMID:21630459
supporting_text: >-
several chromatin-related proteins, such as zinc fingers and
- term:
id: GO:0030302
label: deoxynucleotide transport
evidence_type: NAS
original_reference_id: PMID:11226231
qualifier: involved_in
review:
summary: >-
Author-statement (NAS) that SLC25A19/DNC mediates deoxynucleotide
transport, from the original characterization paper. This reflects the
obsolete "deoxynucleotide carrier" interpretation that was subsequently
overturned; GOA now records explicit NOT annotations against
deoxynucleotide transport. Over-annotated relative to the corrected
physiological function (TPP transport).
action: MARK_AS_OVER_ANNOTATED
supported_by:
- reference_id: file:human/SLC25A19/SLC25A19-uniprot.txt
supporting_text: >-
Previously identified as the mitochondrial deoxyribonucleotide
- reference_id: PMID:17035501
supporting_text: >-
normal mitochondrial ribo- and deoxyribonucleoside triphosphate levels
- term:
id: GO:0030233
label: deoxynucleotide transmembrane transporter activity
evidence_type: TAS
original_reference_id: PMID:11226231
qualifier: enables
review:
summary: >-
Author/TAS assignment of deoxynucleotide transmembrane transporter
activity from the original DNC characterization. Reconstituted transport
was observed in vitro but only at non-physiological (millimolar) Km, and
the physiological function was later established as TPP transport; GOA
carries explicit NOT annotations against this activity. Over-annotated;
not the physiological molecular function.
action: MARK_AS_OVER_ANNOTATED
supported_by:
- reference_id: file:human/SLC25A19/SLC25A19-uniprot.txt
supporting_text: >-
SLC25A19 is a thiamine diphosphate transporter and not a
- reference_id: PMID:15539640
supporting_text: >-
which is a thousandfold higher than that of the
core_functions:
- description: >-
Mitochondrial thiamine pyrophosphate carrier: transports thiamine
pyrophosphate (TPP/ThDP) across the mitochondrial inner membrane from the
cytosol into the matrix, functioning as an exchanger (TPP in, thiamine
monophosphate out). This supplies the TPP cofactor required by matrix
TPP-dependent dehydrogenase complexes (pyruvate dehydrogenase,
2-oxoglutarate dehydrogenase, branched-chain 2-oxo-acid dehydrogenase).
molecular_function:
id: GO:0090422
label: thiamine pyrophosphate transmembrane transporter activity
directly_involved_in:
- id: GO:0030974
label: thiamine pyrophosphate transmembrane transport
locations:
- id: GO:0005743
label: mitochondrial inner membrane
supported_by:
- reference_id: PMID:17035501
supporting_text: >-
We conclude that SLC25A19 transports ThPP
- reference_id: PMID:17035501
supporting_text: >-
confirmed it by using transport assays of the recombinant reconstituted protein
- reference_id: file:human/SLC25A19/SLC25A19-uniprot.txt
supporting_text: >-
Mitochondrial transporter mediating uptake of thiamine
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO
terms
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location
vocabulary mapping, accompanied by conservative changes to GO terms applied by
UniProt
findings: []
- id: GO_REF:0000052
title: Gene Ontology annotation based on curation of immunofluorescence data
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning models
findings: []
- id: PMID:11226231
title: The human mitochondrial deoxynucleotide carrier and its role in the toxicity
of nucleoside antivirals.
findings:
- statement: >-
Original characterization of SLC25A19/DNC: recombinant reconstituted
protein transported dNDPs (and less efficiently dNTPs) in exchange for
dNDPs, ADP or ATP. This deoxynucleotide-carrier interpretation was later
superseded by identification of TPP as the physiological substrate.
reference_section_type: ABSTRACT
supporting_text: >-
catalyzed the transport of all four deoxy (d) NDPs, and, less efficiently,
the corresponding dNTPs, in exchange for dNDPs, ADP, or ATP
reference_review:
relevance: MEDIUM
correctness: DISPUTED
review_notes: >-
PubMed-verified. Foundational paper but its central claim (SLC25A19 is the
mitochondrial deoxynucleotide carrier) was overturned by later knockout
and transport studies; the physiological substrate is thiamine
pyrophosphate, not deoxynucleotides.
- id: PMID:15539640
title: Expression of deoxynucleotide carrier is not associated with the mitochondrial
DNA depletion caused by anti-HIV dideoxynucleoside analogs and mitochondrial dNTP
uptake.
findings:
- statement: >-
DNC/SLC25A19 does not play a physiological role in deoxynucleotide
transport: reconstituted dNTP uptake had millimolar Km (~1000x above
physiological), and DNC over-expression/knockdown did not affect mtDNA
depletion or mitochondrial dNTP uptake.
reference_section_type: ABSTRACT
supporting_text: >-
DNC does not play an important role in the delayed cytotoxicity (mtDNA
depletion) of anti-HIV dideoxynucleoside analogs and dNTPs uptake into
mitochondria
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
PubMed-verified. Provides the cellular evidence against the deoxynucleotide
transporter role and underpins the NOT annotations for GO:0030233 and
GO:0030302.
- id: PMID:17035501
title: Knockout of Slc25a19 causes mitochondrial thiamine pyrophosphate depletion,
embryonic lethality, CNS malformations, and anemia.
findings:
- statement: >-
Slc25a19 knockout mice have normal mitochondrial dNTP/rNTP pools and no
mtDNA depletion, but undetectable mitochondrial ThPP; reconstituted
recombinant SLC25A19 transports ThPP. Establishes TPP transport as the
physiological function, with loss causing OGDH dysfunction and
2-oxoglutaric aciduria.
reference_section_type: ABSTRACT
supporting_text: >-
We identified thiamine pyrophosphate (ThPP) transport as a candidate
function of SLC25A19 through homology searching and confirmed it by using
transport assays of the recombinant reconstituted protein
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
PubMed-verified; full text available. Definitive genetic and biochemical
evidence that the physiological substrate is thiamine pyrophosphate, not
deoxynucleotides. Primary support for the core molecular function.
- id: PMID:21630459
title: Proteomic characterization of the human sperm nucleus.
findings:
- statement: >-
Large-scale proteomic catalogue of the human sperm nucleus in which
SLC25A19 was detected. As a mitochondrial inner-membrane carrier, its
presence in this nuclear preparation most likely reflects a proteomic
contaminant rather than functional nuclear localization.
reference_section_type: ABSTRACT
supporting_text: >-
403 different proteins have been identified from the isolated sperm nuclei
reference_review:
relevance: LOW
correctness: LOW_QUALITY
review_notes: >-
PubMed-verified. High-throughput sperm-nucleus proteome; source of the
HDA nucleus annotation, which is not biologically informative for a
mitochondrial carrier and is likely a contaminant.
- id: PMID:27188525
title: 'Structure-function characterization of the human mitochondrial thiamin pyrophosphate
transporter (hMTPPT; SLC25A19): Important roles for Ile(33), Ser(34), Asp(37),
His(137) and Lys(291).'
findings:
- statement: >-
Site-directed mutagenesis with TPP uptake assays on isolated mitochondria
identified Ile33, Ser34, Asp37, His137 and Lys291 as important for hMTPPT
function, confirming SLC25A19 as the mitochondrial TPP uptake carrier.
reference_section_type: ABSTRACT
supporting_text: >-
an important role for Ile33, Ser34, Asp37, His137 and Lys291 residues in
function of the hMTPPT
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
PubMed-verified; full text available. Structure-function study confirming
TPP transport activity and mitochondrial delivery of hMTPPT.
- id: PMID:31506564
title: Functional analysis of the third identified SLC25A19 mutation causative for
the thiamine metabolism dysfunction syndrome 4.
findings:
- statement: >-
Functional analysis of the THMD4-causing Q192H variant: it reduces
3H-TPP uptake by isolated mitochondria and lowers hMTPPT protein
expression/mitochondrial delivery without affecting mRNA, supporting TPP
transport as the disease-relevant function.
reference_section_type: ABSTRACT
supporting_text: >-
mitochondrial TPP transporter (hMTPPT)
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
PubMed-verified; full text available. Clinical/functional confirmation of
TPP transport and mitochondrial localization; source of THMD4 variant
Q192H.
- id: PMID:34800366
title: Quantitative high-confidence human mitochondrial proteome and its dynamics
in cellular context.
findings:
- statement: >-
SLC25A19 is included in the high-confidence human mitochondrial proteome
(MitoCoP), corroborating its mitochondrial localization.
reference_section_type: ABSTRACT
supporting_text: >-
mitochondrial high-confidence proteome of >1,100 proteins (MitoCoP)
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: >-
PubMed-verified. High-throughput mitochondrial proteomics supporting the
mitochondrial localization annotation.
- id: Reactome:R-HSA-196819
title: Vitamin B1 (thiamin) metabolism
findings:
- statement: >-
Reactome pathway placing SLC25A19 within vitamin B1 (thiamin) metabolism;
thiamin is pyrophosphorylated to the coenzyme thiamin pyrophosphate.
reference_section_type: OTHER
supporting_text: >-
thiamin is converted into the coenzyme thiamin pyrophosphate
- id: Reactome:R-HSA-8875838
title: SLC25A19 transports ThDP from cytosol to mitochondrial matrix
findings:
- statement: >-
Reactome reaction describing SLC25A19-mediated transport of thiamine
pyrophosphate (ThDP) from cytosol into the mitochondrial matrix, where it
serves as a cofactor for PDH, alpha-ketoglutarate dehydrogenase and
branched-chain amino acid dehydrogenase.
reference_section_type: OTHER
supporting_text: >-
transporter of thiamine pyrophosphate (ThDP) into mitochondria
- id: file:human/SLC25A19/SLC25A19-uniprot.txt
title: UniProtKB Q9HC21 (TPC_HUMAN) record
findings:
- statement: >-
UniProt describes SLC25A19 as the mitochondrial thiamine pyrophosphate
carrier mediating uptake of thiamine diphosphate into mitochondria, a
multi-pass inner-membrane protein of the mitochondrial carrier family,
and documents its historical mis-identification as a deoxyribonucleotide
carrier.
reference_section_type: OTHER
supporting_text: >-
Mitochondrial transporter mediating uptake of thiamine
proposed_new_terms: []
suggested_questions: []
suggested_experiments: []