SLC25A36

UniProt ID: Q96CQ1
Organism: Homo sapiens
Review Status: INITIALIZED
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Gene Description

SLC25A36 (mitochondrial pyrimidine nucleotide carrier; also called PNC2) is a member of the SLC25 mitochondrial carrier family: a ~34 kDa multi-pass protein of the mitochondrial inner membrane with three Solcar repeats and six transmembrane helices. Reconstituted in proteoliposomes it selectively transports cytosine and uracil (and, more weakly, guanine) (deoxy)nucleoside mono-, di-, and triphosphates across the inner membrane, chiefly by an antiport (nucleotide-for-nucleotide exchange) mechanism and, at a lower rate, by uniport; adenine nucleotides are not transported and CTP is the preferred substrate. By importing pyrimidine (deoxy)nucleotides into the matrix in exchange for the products of their catabolism, it supplies precursors for mitochondrial DNA and RNA synthesis and contributes to mitochondrial genome maintenance, membrane potential, and respiration. It is the human functional counterpart of the yeast RIM2 pyrimidine nucleotide carrier. Biallelic loss of function causes an autosomal recessive hyperinsulinism/hyperammonemia-type disorder (familial hyperinsulinemic hypoglycemia 8), with protein-provoked hypoglycemia, mild hyperammonemia, and seizures.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0005739 mitochondrion
IBA
GO_REF:0000033
KEEP AS NON CORE
Summary: Correct organelle-level localization inferred phylogenetically from the RIM2/SLC25A33/SLC25A36 mitochondrial-carrier clade. Consistent with experimental IDA/HTP evidence, but redundant with the more specific mitochondrial inner membrane term, so keep as non-core.
GO:1990519 pyrimidine nucleotide import into mitochondrion
IBA
GO_REF:0000033
ACCEPT
Summary: Core biological process, here inferred phylogenetically and matching the human experimental IDA evidence. SLC25A36 imports pyrimidine (deoxy)nucleotides into the mitochondrial matrix to supply precursors for mtDNA/mtRNA synthesis. Accept.
GO:0015218 pyrimidine nucleotide transmembrane transporter activity
IBA
GO_REF:0000033
ACCEPT
Summary: Core molecular function, inferred phylogenetically from the mitochondrial pyrimidine nucleotide carrier clade and fully consistent with the human experimental IDA annotation and with UniProt. Accept.
GO:0005743 mitochondrial inner membrane
IEA
GO_REF:0000044
ACCEPT
Summary: Correct core localization, mapped electronically from the UniProt subcellular-location vocabulary. Matches the UniProt assertion of an inner-membrane multi-pass carrier and the biochemical reconstitution work. Accept.
Supporting Evidence:
file:human/SLC25A36/SLC25A36-uniprot.txt
Mitochondrion inner membrane
GO:0006862 nucleotide transport
IEA
GO_REF:0000117
MARK AS OVER ANNOTATED
Summary: Over-generalized ARBA-derived annotation. SLC25A36 does mediate nucleotide transport, but this generic term is a distant, uninformative parent of the specific and experimentally supported pyrimidine nucleotide import into mitochondrion (GO:1990519). Over-annotation.
GO:0015218 pyrimidine nucleotide transmembrane transporter activity
IEA
GO_REF:0000002
ACCEPT
Summary: Core molecular function derived electronically from the InterPro SLC25A33/36-like signature (IPR049562). Matches the experimental IDA/IBA calls and UniProt. Accept.
GO:0055085 transmembrane transport
IEA
GO_REF:0000002
KEEP AS NON CORE
Summary: Correct but very general InterPro-derived process term for a mitochondrial carrier. True but uninformative relative to the specific pyrimidine nucleotide import process; keep as non-core.
GO:1990519 pyrimidine nucleotide import into mitochondrion
IDA
PMID:25320081
The human SLC25A33 and SLC25A36 genes of solute carrier fami...
ACCEPT
Summary: Strongest experimental support for the core biological process. Reconstituted SLC25A36 transports cytosine and uracil (deoxy)nucleotides across the inner membrane by uniport and antiport; its main physiological role is to import/export pyrimidine nucleotides essential for mitochondrial DNA and RNA synthesis and breakdown. Accept as core.
Supporting Evidence:
PMID:25320081
import/export pyrimidine
PMID:25320081
essential for mitochondrial DNA and RNA synthesis and breakdown
GO:0005739 mitochondrion
HTP
PMID:34800366
Quantitative high-confidence human mitochondrial proteome an...
KEEP AS NON CORE
Summary: High-throughput mitochondrial-proteome localization to the mitochondrion. Correct at the organelle level and consistent with other evidence; less specific than the inner-membrane annotation, so keep as non-core.
GO:0005739 mitochondrion
IDA
PMID:25320081
The human SLC25A33 and SLC25A36 genes of solute carrier fami...
KEEP AS NON CORE
Summary: Direct experimental support: SLC25A33 and SLC25A36 were found to be targeted to mitochondria. Correct organelle-level localization, redundant with the more specific inner-membrane term, so keep as non-core.
Supporting Evidence:
PMID:25320081
SLC25A33 and SLC25A36 were found to be targeted to mitochondria
GO:0015218 pyrimidine nucleotide transmembrane transporter activity
IDA
PMID:25320081
The human SLC25A33 and SLC25A36 genes of solute carrier fami...
ACCEPT
Summary: Strongest experimental support for the core molecular function. Recombinant SLC25A36 reconstituted in phospholipid vesicles transports cytosine and uracil (deoxy)nucleoside mono-, di-, and triphosphates by uniport and antiport (CTP the best substrate; adenine nucleotides not transported). Directly demonstrates pyrimidine nucleotide transporter activity. Accept as core.
Supporting Evidence:
PMID:25320081
by uniport and antiport
PMID:25320081
guanine but not adenine (deoxy)nucleotides

Core Functions

Transports pyrimidine (cytosine and uracil) (deoxy)nucleoside mono-, di-, and triphosphates across the mitochondrial inner membrane, chiefly by nucleotide-for-nucleotide antiport and at a lower rate by uniport, with CTP the preferred substrate. Guanine (deoxy)nucleotides are also transported but adenine nucleotides are not.

Supporting Evidence:
  • PMID:25320081
    by uniport and antiport
  • PMID:25320081
    import/export pyrimidine
  • file:human/SLC25A36/SLC25A36-uniprot.txt
    Mitochondrial transporter that imports/exports pyrimidine

References

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Suggested Questions for Experts

Q: What is the physiological directionality and exchange partner set in vivo β€” i.e. which cytosolic (deoxy)nucleotides are imported in exchange for which matrix nucleotide products under normal versus proliferative or mtDNA-depleting conditions?

Q: How does loss of SLC25A36 pyrimidine transport mechanistically produce hyperinsulinism and hyperammonemia, given that the carrier's characterized role is mitochondrial nucleotide-pool maintenance rather than amino-acid or ammonia metabolism?

Suggested Experiments

Experiment: Measure mitochondrial nucleotide pools (UTP/CTP/GTP and dNTPs) and mtDNA/mtRNA content in SLC25A36-null versus rescued human cells to quantify the in vivo consequence of losing pyrimidine nucleotide import for mitochondrial genome maintenance.

Experiment: Perform proteoliposome transport assays with purified human SLC25A36 across a substrate panel (pyrimidine vs purine mono-/di-/triphosphates and their deoxy forms) to define the full substrate specificity and confirm exclusion of adenine nucleotides.

πŸ“š Additional Documentation

Notes

(SLC25A36-notes.md)

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