SLC25A36 (mitochondrial pyrimidine nucleotide carrier; also called PNC2) is a member of the SLC25 mitochondrial carrier family: a ~34 kDa multi-pass protein of the mitochondrial inner membrane with three Solcar repeats and six transmembrane helices. Reconstituted in proteoliposomes it selectively transports cytosine and uracil (and, more weakly, guanine) (deoxy)nucleoside mono-, di-, and triphosphates across the inner membrane, chiefly by an antiport (nucleotide-for-nucleotide exchange) mechanism and, at a lower rate, by uniport; adenine nucleotides are not transported and CTP is the preferred substrate. By importing pyrimidine (deoxy)nucleotides into the matrix in exchange for the products of their catabolism, it supplies precursors for mitochondrial DNA and RNA synthesis and contributes to mitochondrial genome maintenance, membrane potential, and respiration. It is the human functional counterpart of the yeast RIM2 pyrimidine nucleotide carrier. Biallelic loss of function causes an autosomal recessive hyperinsulinism/hyperammonemia-type disorder (familial hyperinsulinemic hypoglycemia 8), with protein-provoked hypoglycemia, mild hyperammonemia, and seizures.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
| GO:0005739 mitochondrion | IBA GO_REF:0000033 | KEEP AS NON CORE | Summary: Correct organelle-level localization inferred phylogenetically from the RIM2/SLC25A33/SLC25A36 mitochondrial-carrier clade. Consistent with experimental IDA/HTP evidence, but redundant with the more specific mitochondrial inner membrane term, so keep as non-core. |
| GO:1990519 pyrimidine nucleotide import into mitochondrion | IBA GO_REF:0000033 | ACCEPT | Summary: Core biological process, here inferred phylogenetically and matching the human experimental IDA evidence. SLC25A36 imports pyrimidine (deoxy)nucleotides into the mitochondrial matrix to supply precursors for mtDNA/mtRNA synthesis. Accept. |
| GO:0015218 pyrimidine nucleotide transmembrane transporter activity | IBA GO_REF:0000033 | ACCEPT | Summary: Core molecular function, inferred phylogenetically from the mitochondrial pyrimidine nucleotide carrier clade and fully consistent with the human experimental IDA annotation and with UniProt. Accept. |
| GO:0005743 mitochondrial inner membrane | IEA GO_REF:0000044 | ACCEPT | Summary: Correct core localization, mapped electronically from the UniProt subcellular-location vocabulary. Matches the UniProt assertion of an inner-membrane multi-pass carrier and the biochemical reconstitution work. Accept. Supporting Evidence: file:human/SLC25A36/SLC25A36-uniprot.txt Mitochondrion inner membrane |
| GO:0006862 nucleotide transport | IEA GO_REF:0000117 | MARK AS OVER ANNOTATED | Summary: Over-generalized ARBA-derived annotation. SLC25A36 does mediate nucleotide transport, but this generic term is a distant, uninformative parent of the specific and experimentally supported pyrimidine nucleotide import into mitochondrion (GO:1990519). Over-annotation. Proposed replacements: pyrimidine nucleotide import into mitochondrion |
| GO:0015218 pyrimidine nucleotide transmembrane transporter activity | IEA GO_REF:0000002 | ACCEPT | Summary: Core molecular function derived electronically from the InterPro SLC25A33/36-like signature (IPR049562). Matches the experimental IDA/IBA calls and UniProt. Accept. |
| GO:0055085 transmembrane transport | IEA GO_REF:0000002 | KEEP AS NON CORE | Summary: Correct but very general InterPro-derived process term for a mitochondrial carrier. True but uninformative relative to the specific pyrimidine nucleotide import process; keep as non-core. |
| GO:1990519 pyrimidine nucleotide import into mitochondrion | IDA PMID:25320081 The human SLC25A33 and SLC25A36 genes of solute carrier fami... | ACCEPT | Summary: Strongest experimental support for the core biological process. Reconstituted SLC25A36 transports cytosine and uracil (deoxy)nucleotides across the inner membrane by uniport and antiport; its main physiological role is to import/export pyrimidine nucleotides essential for mitochondrial DNA and RNA synthesis and breakdown. Accept as core. Supporting Evidence: PMID:25320081 import/export pyrimidine PMID:25320081 essential for mitochondrial DNA and RNA synthesis and breakdown |
| GO:0005739 mitochondrion | HTP PMID:34800366 Quantitative high-confidence human mitochondrial proteome an... | KEEP AS NON CORE | Summary: High-throughput mitochondrial-proteome localization to the mitochondrion. Correct at the organelle level and consistent with other evidence; less specific than the inner-membrane annotation, so keep as non-core. |
| GO:0005739 mitochondrion | IDA PMID:25320081 The human SLC25A33 and SLC25A36 genes of solute carrier fami... | KEEP AS NON CORE | Summary: Direct experimental support: SLC25A33 and SLC25A36 were found to be targeted to mitochondria. Correct organelle-level localization, redundant with the more specific inner-membrane term, so keep as non-core. Supporting Evidence: PMID:25320081 SLC25A33 and SLC25A36 were found to be targeted to mitochondria |
| GO:0015218 pyrimidine nucleotide transmembrane transporter activity | IDA PMID:25320081 The human SLC25A33 and SLC25A36 genes of solute carrier fami... | ACCEPT | Summary: Strongest experimental support for the core molecular function. Recombinant SLC25A36 reconstituted in phospholipid vesicles transports cytosine and uracil (deoxy)nucleoside mono-, di-, and triphosphates by uniport and antiport (CTP the best substrate; adenine nucleotides not transported). Directly demonstrates pyrimidine nucleotide transporter activity. Accept as core. Supporting Evidence: PMID:25320081 by uniport and antiport PMID:25320081 guanine but not adenine (deoxy)nucleotides |
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Download this section (compressed HTML)Q: What is the physiological directionality and exchange partner set in vivo β i.e. which cytosolic (deoxy)nucleotides are imported in exchange for which matrix nucleotide products under normal versus proliferative or mtDNA-depleting conditions?
Q: How does loss of SLC25A36 pyrimidine transport mechanistically produce hyperinsulinism and hyperammonemia, given that the carrier's characterized role is mitochondrial nucleotide-pool maintenance rather than amino-acid or ammonia metabolism?
Experiment: Measure mitochondrial nucleotide pools (UTP/CTP/GTP and dNTPs) and mtDNA/mtRNA content in SLC25A36-null versus rescued human cells to quantify the in vivo consequence of losing pyrimidine nucleotide import for mitochondrial genome maintenance.
Experiment: Perform proteoliposome transport assays with purified human SLC25A36 across a substrate panel (pyrimidine vs purine mono-/di-/triphosphates and their deoxy forms) to define the full substrate specificity and confirm exclusion of adenine nucleotides.
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