SLC52A1

UniProt ID: Q9NWF4
Organism: Homo sapiens
Review Status: INITIALIZED
πŸ“ Provide Detailed Feedback

Gene Description

SLC52A1 (riboflavin transporter 1, RFVT1/hRFT1) is a multi-pass plasma membrane transporter of the SLC52 riboflavin-transporter family that mediates cellular uptake of the water-soluble vitamin B2 (riboflavin), the precursor of the redox cofactors FMN and FAD. Because humans cannot synthesize riboflavin, SLC52A1 contributes to its absorption and distribution; transport is Na+-, Cl-- and pH-independent facilitated diffusion (KM ~1.4 uM) and is inhibited by riboflavin analogs such as lumiflavin. It is widely expressed with highest expression in testis, placenta and small intestine, where in polarized enterocytes it localizes to the basolateral membrane and mediates riboflavin exit toward the bloodstream, and is important for maternal-fetal riboflavin transfer across the placenta. Loss-of-function of maternal SLC52A1 causes transient neonatal riboflavin deficiency presenting as multiple acyl-CoA dehydrogenase deficiency / glutaric aciduria type 2, which resolves with riboflavin supplementation. In primates SLC52A1 arose by duplication of SLC52A2 and was neofunctionalized to additionally transport urate; basolaterally in enterocytes it works with the luminal efflux transporter ABCG2 to secrete urate into the intestine. It was originally identified as a human receptor (huPAR-2) for porcine endogenous retrovirus PERV-A.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0005886 plasma membrane
IBA
GO_REF:0000033
ACCEPT
Summary: Phylogenetic (IBA) assertion that SLC52A1 acts at the plasma membrane. This is the correct core localization for RFVT1 and is directly confirmed by multiple experimental annotations for this gene; retain as core.
Supporting Evidence:
file:human/SLC52A1/SLC52A1-uniprot.txt
SUBCELLULAR LOCATION: Cell membrane {ECO:0000269|PubMed:12740431,
GO:0032217 riboflavin transmembrane transporter activity
IBA
GO_REF:0000033
ACCEPT
Summary: Phylogenetic (IBA) assertion of riboflavin transmembrane transporter activity, the defining core molecular function of the SLC52 family. Confirmed experimentally for human RFVT1; retain as core.
Supporting Evidence:
file:human/SLC52A1/SLC52A1-uniprot.txt
Plasma membrane transporter mediating the uptake by cells of
GO:0032218 riboflavin transport
IBA
GO_REF:0000033
ACCEPT
Summary: Phylogenetic (IBA) assertion that SLC52A1 is involved in riboflavin transport, the core biological process for this transporter. Experimentally supported; retain as core.
Supporting Evidence:
PMID:18632736
Overexpression of hRFT1 and rRFT1, but not
GO:0005886 plasma membrane
IEA
GO_REF:0000120
ACCEPT
Summary: Electronic (IEA) plasma membrane annotation from UniProt SubCell/InterPro pipelines. This is redundant with the experimental annotations but is the gene's own correct core localization, so accept rather than flag as over-annotated.
Supporting Evidence:
file:human/SLC52A1/SLC52A1-uniprot.txt
SUBCELLULAR LOCATION: Cell membrane {ECO:0000269|PubMed:12740431,
GO:0032217 riboflavin transmembrane transporter activity
IEA
GO_REF:0000120
ACCEPT
Summary: Electronic (IEA, ARBA/InterPro) assertion of the core riboflavin transmembrane transporter activity. Correct core function of the gene; accept despite being redundant with experimental annotations.
Supporting Evidence:
file:human/SLC52A1/SLC52A1-uniprot.txt
Plasma membrane transporter mediating the uptake by cells of
GO:0032218 riboflavin transport
IEA
GO_REF:0000002
ACCEPT
Summary: Electronic (IEA, InterPro2GO) assertion of riboflavin transport. Correct core biological process; accept despite redundancy with experimental annotations.
Supporting Evidence:
PMID:18632736
Overexpression of hRFT1 and rRFT1, but not
GO:0005515 protein binding
IPI
PMID:32296183
A reference map of the human binary protein interactome.
MARK AS OVER ANNOTATED
Summary: Bare "protein binding" derived from high-throughput binary interactome (Y2H) hits (SLC7A1, IFNGR2, GJA8, AQP6, SGCB, SHISAL1, TMEM179B, TMEM237, CREB3L1). These interactions are uninformative about molecular function and no specific binding partner is biologically characterized for RFVT1. Not removed (IPI experimental evidence) but marked as over-annotated per curation guidance to avoid the uninformative "protein binding" term.
GO:0015143 urate transmembrane transporter activity
IDA
PMID:41759742
SLC52A1 is a neofunctionalized primate urate transporter ena...
ACCEPT
Summary: Direct assay (IDA) showing primate/human SLC52A1 transports urate in addition to riboflavin, a neofunctionalized activity acquired after duplication from SLC52A2. This is a genuine experimentally demonstrated molecular function; retain as a core function.
Supporting Evidence:
PMID:41759742
Functional studies demonstrated the ability of primate SLC52A1
GO:0015747 urate transport
IDA
PMID:41759742
SLC52A1 is a neofunctionalized primate urate transporter ena...
ACCEPT
Summary: Direct assay (IDA) that SLC52A1, basolaterally localized in enterocytes, mediates urate uptake and efflux and works with ABCG2 to secrete urate from the basolateral side, enabling intestinal urate secretion. Genuine experimentally supported biological process; retain as core.
Supporting Evidence:
PMID:41759742
the mediation of cellular uptake
GO:0006771 riboflavin metabolic process
TAS
Reactome:R-HSA-196843
MARK AS OVER ANNOTATED
Summary: TAS annotation from Reactome's broad "Vitamin B2 (riboflavin) metabolism" pathway grouping. SLC52A1 is a membrane transporter that moves intact riboflavin across the plasma membrane; it does not chemically transform riboflavin, so "riboflavin metabolic process" over-states its role. The transport role is better captured by GO:0032218 (riboflavin transport). Not removed (TAS), but marked as over-annotated.
GO:0016323 basolateral plasma membrane
IDA
PMID:21854757
Differential expression of human riboflavin transporters -1,...
ACCEPT
Summary: Direct assay (live-cell confocal imaging in polarized Caco-2 and MDCK cells) showing hRFT-1 (SLC52A1) is expressed mainly at the basolateral membrane. This is a more specific and informative localization than plasma membrane, relevant to its role in riboflavin exit toward the bloodstream; retain as core.
Supporting Evidence:
PMID:21854757
the hRFT-1 is mainly expressed at the BLM
GO:0032217 riboflavin transmembrane transporter activity
IDA
PMID:21854757
Differential expression of human riboflavin transporters -1,...
ACCEPT
Summary: Direct assay of RFVT1-mediated riboflavin uptake in transfected cells, confirming the core molecular function. Retain as core.
Supporting Evidence:
PMID:21854757
over-expression of hRFTs in HuTu-80 cells caused a significant induction in carrier-mediated RF uptake
GO:0005886 plasma membrane
EXP
PMID:12740431
Identification of receptors for pig endogenous retrovirus.
ACCEPT
Summary: Experimental (EXP) plasma membrane localization from the original PERV-A receptor study, consistent with RFVT1 being a multi-pass cell-surface transporter. Correct core localization; retain.
Supporting Evidence:
PMID:12740431
multiple membrane-spanning proteins similar to receptors for other
GO:0005886 plasma membrane
EXP
PMID:18632736
Identification and functional characterization of a novel hu...
ACCEPT
Summary: Experimental (EXP) plasma membrane localization; GFP-tagged hRFT1 showed a fluorescent signal at the plasma membrane in HEK-293 cells. Correct core localization; retain.
Supporting Evidence:
PMID:18632736
exhibited a fluorescent
GO:0032217 riboflavin transmembrane transporter activity
TAS
Reactome:R-HSA-3165230
ACCEPT
Summary: TAS (Reactome) assertion of the core riboflavin transmembrane transporter activity, describing SLC52A1/2/3 transport of riboflavin from the extracellular region to the cytosol. Correct core function; retain.
Supporting Evidence:
Reactome:R-HSA-3165230
Three human riboflavin transporters mediate the transport of
GO:0005886 plasma membrane
TAS
Reactome:R-HSA-3165230
ACCEPT
Summary: TAS (Reactome) plasma membrane localization consistent with the transporter's site of action. Correct core localization; retain.
Supporting Evidence:
Reactome:R-HSA-3165230
transport RIB from extracellular region to cytosol
GO:0005886 plasma membrane
IDA
PMID:20463145
Identification and comparative functional characterization o...
ACCEPT
Summary: Direct assay plasma membrane localization for hRFT1 in the comparative hRFT characterization study. Correct core localization; retain.
Supporting Evidence:
PMID:20463145
It was predicted to have 10 putative membrane-spanning domains.
GO:0032217 riboflavin transmembrane transporter activity
IDA
PMID:20463145
Identification and comparative functional characterization o...
ACCEPT
Summary: Direct assay of hRFT1-mediated [3H]riboflavin uptake (KM ~1.38 uM), confirming the core molecular function. Retain as core.
Supporting Evidence:
PMID:20463145
uptake of [3H]riboflavin was evaluated using human embryonic kidney 293 cells
GO:0032218 riboflavin transport
IDA
PMID:20463145
Identification and comparative functional characterization o...
ACCEPT
Summary: Direct assay that hRFT1 mediates cellular riboflavin uptake, supporting involvement in the core riboflavin transport process. Retain as core.
Supporting Evidence:
PMID:20463145
uptake of [3H]riboflavin was evaluated using human embryonic kidney 293 cells

Core Functions

Riboflavin (vitamin B2) transmembrane transporter that mediates Na+-, Cl--, and pH-independent facilitated uptake of riboflavin across the plasma membrane, supplying cells with the precursor of the FMN/FAD redox cofactors.

Supporting Evidence:

Neofunctionalized primate/human activity: SLC52A1 additionally transports urate, mediating both uptake and efflux by facilitated diffusion; basolaterally in enterocytes it works with ABCG2 to enable intestinal urate secretion.

Directly Involved In:
Supporting Evidence:

References

Loading supporting content…

Download this section (compressed HTML)

πŸ“š Additional Documentation

Notes

(SLC52A1-notes.md)

Loading supporting content…

Download this section (compressed HTML)

πŸ“„ View Raw YAML

Loading supporting content…

Download this section (compressed HTML)