SMIM10 (formerly CXorf69) is an 83-amino-acid X-linked protein whose only predicted transmembrane helix lies at the extreme C terminus (residues 64-82). It is therefore predicted to be a tail-anchored membrane protein with a soluble N-terminal region of about 60 residues, rich in glycine, alanine and arginine near the N terminus. Neither the topology nor the membrane it occupies has been tested directly. SMIM10 belongs to a small family with the paralogues SMIM10L1, SMIM10L2A and SMIM10L2B. Its mRNA is most abundant in blood and vascular tissue. In a yeast-based screen for human cDNAs that suppress the toxicity of oncogenic BRAF V600E, SMIM10 was recovered and described as a mitochondrial protein. When overexpressed in BRAF V600E melanoma cells it indirectly lowers BRAF V600E mRNA and protein, disrupts mitochondrial structure and function, and induces senescence. No molecular function, physiological process or loss-of-function phenotype has been established.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
| GO:0016020 membrane | IEA GO_REF:0000044 | ACCEPT | Summary: UniProt subcellular-location mapping to membrane, based on the predicted C-terminal helical transmembrane segment (residues 64-82). Reason: Correct but general. SMIM10 has been described as mitochondrial in a single overexpression study (PMID:30237439), but the evidence visible in the abstract is not enough to support a more specific membrane term, so membrane is retained as the safest location. Supporting Evidence: file:human/SMIM10/SMIM10-uniprot.txt SUBCELLULAR LOCATION: Membrane PMID:30237439 we identify SMIM10, a mitochondrial protein that in melanoma cells selectively downregulates BRAFV600E RNA and protein levels, by acting indirectly at the post-transcriptional level. |
Loading supporting contentβ¦
Download this section (compressed HTML)Q: Is endogenous SMIM10 mitochondrial, and if so is it a tail-anchored protein of the outer membrane? The only localization claim comes from an overexpression study in melanoma cells (PMID:30237439).
Q: Is the mitochondrial damage seen on SMIM10 overexpression a specific activity, or a nonspecific effect of overloading a tail-anchored membrane protein?
Experiment: Tag the endogenous SMIM10 locus and test co-localization with outer- and inner-membrane markers, protease protection of isolated mitochondria, and carbonate extraction. Compare the mitochondrial and proliferation phenotypes of SMIM10 knockout cells with those of overexpression.
Hypothesis: Endogenous SMIM10 is a tail-anchored protein of the mitochondrial outer membrane.
Type: subcellular fractionation and protease protection
Loading supporting contentβ¦
Download this section (compressed HTML)Loading supporting contentβ¦
Download this section (compressed HTML)