SMIM13 (formerly C6orf228) is a 91-amino-acid (about 10.4 kDa) protein of the SMIM13 family (Pfam DUF4750). It has a single predicted transmembrane helix near the N terminus (residues 10-30), and its C-terminal half (residues 47-91) is predicted to be intrinsically disordered, with basic and mixed-charge stretches; four serine/threonine residues in this tail are annotated as phosphorylation sites by similarity to the mouse protein. The transcript is detected in all tissues and is enriched in brain. Antibody staining in the Human Protein Atlas gives nucleoplasm as the main signal, with nuclear membrane and Golgi apparatus as additional locations; the membrane in which the protein actually resides has not been established by an orthogonal method. No molecular activity, interaction partner or biological process has been reported for SMIM13.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
| GO:0016020 membrane | IEA GO_REF:0000044 | ACCEPT | Summary: Electronic mapping of the UniProt subcellular location "Membrane; Single-pass membrane protein", which is itself inferred from the predicted transmembrane helix. Reason: Correct but uninformative. A 21-residue hydrophobic helix is a reliable indicator of membrane integration. No experimental evidence currently identifies the organelle, so this generic term is the most specific one that can be supported. Supporting Evidence: UniProt:P0DJ93 SUBCELLULAR LOCATION: Membrane |
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Download this section (compressed HTML)Q: In which membrane does endogenous SMIM13 reside? Antibody staining suggests nuclear envelope and Golgi, but the main nucleoplasmic signal is unexpected for an integral membrane protein and needs an orthogonal method.
Q: Is SMIM13 phosphorylated in human cells, and does phosphorylation of its disordered C-terminal tail affect localisation or partners?
Experiment: Express endogenously tagged SMIM13 and co-stain with nuclear envelope (LMNB1, SUN2) and Golgi (GOLGA2) markers; confirm membrane integration by carbonate extraction, and validate the commercial antibody in knockout cells.
Hypothesis: SMIM13 is an integral membrane protein of the nuclear envelope or Golgi.
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