STOML1

UniProt ID: Q9UBI4
Organism: Homo sapiens
Review Status: COMPLETE
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Gene Description

STOML1 (Stomatin-like protein 1, also known as SLP-1) is a monotopic membrane protein belonging to the SPFH/band-7 family with a distinctive bipartite architecture: an N-terminal stomatin-like (SPFH) domain and a C-terminal sterol carrier protein-2 (SCP-2) domain. Unlike stomatin which localizes predominantly to the plasma membrane, STOML1 is targeted to late endosomes/multivesicular bodies via an N-terminal GYXXF sorting signal. The protein plays roles in cholesterol/lipid transfer within endolysosomal membranes, modulation of acid-sensing ion channels (ASICs) in sensory neurons, and regulation of F-box protein FBXW7 stability. STOML1 interacts with stomatin, redistributing it from plasma membrane to late endosomes, associates with the lysosomal cation channel TRPML1, and binds FBXW7-gamma and CDK2 to regulate protein turnover. Expression is highest in brain, heart, and skeletal muscle, with functional significance in neuronal proton sensing.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0008200 ion channel inhibitor activity
IBA
GO_REF:0000033
ACCEPT
Summary: STOML1 has been experimentally demonstrated to inhibit acid-sensing ion channels (ASICs), specifically strongly inhibiting ASIC1a-mediated proton currents and accelerating ASIC3 inactivation. The SCP-2 domain is required for ASIC1a modulation. STOML1 knockout mice show larger proton-gated currents in dorsal root ganglion neurons, confirming an endogenous inhibitory function (file:human/STOML1/STOML1-deep-research-falcon.md).
Reason: This IBA annotation is strongly supported by experimental evidence. The annotation accurately reflects the core molecular function of STOML1 in inhibiting acid-sensing ion channels (ASICs). GO:0008200 (ion channel inhibitor activity) is appropriate as STOML1 inhibits ASIC1a current amplitude and accelerates ASIC3 inactivation.
Supporting Evidence:
file:human/STOML1/STOML1-deep-research-falcon.md
STOML1 modulates acid-sensing ion channels (ASICs) in sensory neurons. It strongly inhibits ASIC1a-mediated proton currents and accelerates ASIC3 inactivation, with no inhibition of ASIC2a. The SCP-2 domain is necessary for ASIC1a modulation.
GO:0005886 plasma membrane
IBA
GO_REF:0000033
KEEP AS NON CORE
Summary: While STOML1 does localize to the plasma membrane in neurons where it modulates ASICs, experimental evidence shows that STOML1 primarily localizes to late endosomes/multivesicular bodies, not the plasma membrane. Wild-type STOML1 was never observed at significant plasma membrane levels in steady state; only when the N-terminal GYXXF sorting signal was mutated did STOML1 relocate to the plasma membrane (PMID:19696025).
Reason: The IBA annotation suggesting plasma membrane localization may be inherited from other stomatin family members. While STOML1 may transit through or function at the plasma membrane in certain contexts (particularly for ASIC modulation in neurons), its predominant steady-state localization is to late endosomes. This annotation is acceptable as non-core but late endosome membrane (GO:0031902) is more representative of STOML1's primary localization.
Supporting Evidence:
PMID:19696025
We show here that SLP-1 localizes to the late endosomal compartment, like stomatin. Unlike stomatin, SLP-1 does not localize to the plasma membrane.
GO:0005886 plasma membrane
IEA
GO_REF:0000120
KEEP AS NON CORE
Summary: This IEA annotation suggesting plasma membrane localization is less accurate than late endosome membrane for STOML1. Experimental evidence clearly shows STOML1 localizes to late endosomes/multivesicular bodies as its primary location. Plasma membrane localization only occurs when the N-terminal sorting signal is mutated.
Reason: This is a computational annotation that is broader than the experimentally determined primary localization. While not incorrect (STOML1 may function at plasma membrane in neurons for ASIC modulation), the primary localization is to late endosomes. Accept as non-core since it represents a secondary or transient localization.
Supporting Evidence:
PMID:19696025
We show here that SLP-1 localizes to the late endosomal compartment, like stomatin. Unlike stomatin, SLP-1 does not localize to the plasma membrane.
GO:0006869 lipid transport
IEA
GO_REF:0000043
ACCEPT
Summary: STOML1 contains an SCP-2 (sterol carrier protein-2) domain, which is implicated in cholesterol and lipid transfer. Under conditions of blocked cholesterol efflux from late endosomes, STOML1 expression induces enlarged, cholesterol-filled vesicles, and this phenotype requires the SCP-2 domain (PMID:19696025). This strongly supports a role in lipid/sterol transport.
Reason: This IEA annotation based on UniProt keyword mapping is well-supported by experimental evidence showing STOML1's SCP-2 domain is involved in cholesterol handling at late endosomes. The annotation reflects a core function of STOML1 in lipid/sterol transfer.
Supporting Evidence:
PMID:19696025
In accordance with the proposed lipid transfer function, we show that, under conditions of blocked cholesterol efflux from late endosomes, SLP-1 induces the formation of enlarged, cholesterol-filled, weakly LAMP-2-positive, acidic vesicles in the perinuclear region. This massive cholesterol accumulation clearly depends on the SCP-2 domain of SLP-1, suggesting a role for this domain in cholesterol transfer to late endosomes.
GO:0016020 membrane
IEA
GO_REF:0000120
ACCEPT
Summary: STOML1 is indeed a membrane protein with a single transmembrane helix (type III membrane protein). This general membrane annotation is correct but very broad.
Reason: This is a correct but generic annotation. STOML1 is a monotopic membrane protein that associates with detergent-resistant membranes (lipid rafts). The annotation is accurate though more specific terms (late endosome membrane, membrane raft) are more informative.
Supporting Evidence:
PMID:19696025
The human stomatin-like protein-1 (SLP-1) is a membrane protein with a characteristic bipartite structure containing a stomatin domain and a sterol carrier protein-2 (SCP-2) domain.
GO:0031410 cytoplasmic vesicle
IEA
GO_REF:0000120
ACCEPT
Summary: STOML1 localizes to late endosomes/multivesicular bodies, which are cytoplasmic vesicles. The protein also appears in small extracellular vesicle proteomes, consistent with its endolysosomal localization.
Reason: This annotation is consistent with STOML1's localization to multivesicular bodies and late endosomes, which are indeed cytoplasmic vesicles. The annotation is accurate though the more specific term GO:0031902 (late endosome membrane) is preferred.
Supporting Evidence:
PMID:19696025
expressed SLP-1 was always identified in perinuclear vesicles that co-localized with markers for the late endosomal/lysosomal compartment. Late endosomal targeting was further supported by immunoelectron microscopy and co-localization with acidic vesicles and endocytosed TRITC-dextran.
GO:0031902 late endosome membrane
IEA
GO_REF:0000044
ACCEPT
Summary: This is the most accurate cellular component annotation for STOML1. Experimental evidence from confocal microscopy, immuno-EM, and co-localization studies shows STOML1 localizes to late endosomes/multivesicular bodies, co-localizing with LAMP-2, Rab7, and Rab9 but not early endosome markers (PMID:19696025).
Reason: This annotation accurately represents STOML1's primary subcellular localization. The N-terminal GYXXF sorting signal directs STOML1 specifically to late endosomes, and mutation of this signal results in plasma membrane localization instead. This is a core annotation for STOML1.
Supporting Evidence:
PMID:19696025
We show here that SLP-1 localizes to the late endosomal compartment, like stomatin.
PMID:19696025
We found that the targeting of SLP-1 to late endosomes is caused by a GYXXPhi (Phi being a bulky, hydrophobic amino acid) sorting signal at the N terminus. Mutation of this signal results in plasma membrane localization.
GO:0045121 membrane raft
IEA
GO_REF:0000044
ACCEPT
Summary: STOML1 associates with detergent-resistant membranes (lipid rafts), similar to other stomatin family members. The PHB domain is involved in this association, possibly in combination with the hydrophobic domain (PMID:19696025).
Reason: This annotation is experimentally supported. STOML1 associates with detergent-resistant membranes and its distribution in density gradients resembles that of stomatin and cholesterol. This is a core characteristic of SPFH/stomatin family proteins.
Supporting Evidence:
PMID:19696025
SLP-1 and stomatin co-localize in the late endosomal compartment, they co-immunoprecipitate, thus showing a direct interaction, and they associate with detergent-resistant membranes.
PMID:19696025
SLP-1 is partially associated with DRMs and its distribution resembles that of stomatin and cholesterol.
GO:0005515 protein binding
IPI
PMID:19696025
Stomatin-like protein-1 interacts with stomatin and is targe...
ACCEPT
Summary: PMID:19696025 demonstrates that STOML1 interacts directly with stomatin via co-immunoprecipitation. The interaction site was localized to the conserved stomatin part of STOML1. Overexpression of STOML1 redistributes stomatin from the plasma membrane to late endosomes.
Reason: While GO:0005515 (protein binding) is too generic and uninformative, the interaction with stomatin is experimentally validated. The specific interaction partner is stomatin (STOM). Accepting this annotation as the interaction is well-documented, though a more specific term would be preferable if one existed.
Supporting Evidence:
PMID:19696025
Overexpression of SLP-1 leads to the redistribution of stomatin from the plasma membrane to late endosomes suggesting a complex formation between these proteins.
PMID:19696025
We proved the postulated interaction of SLP-1 with stomatin by co-immunoprecipitation and localized the interaction site to the conserved stomatin part of SLP-1.
GO:0005515 protein binding
IPI
PMID:23082202
The stomatin-like protein SLP-1 and Cdk2 interact with the F...
ACCEPT
Summary: PMID:23082202 demonstrates that STOML1 (SLP-1) interacts with FBXW7-gamma isoform and CDK2 via co-immunoprecipitation. The interaction with FBXW7-gamma is specific (not seen with alpha or beta isoforms) and STOML1 overexpression inhibits FBXW7-gamma degradation.
Reason: While GO:0005515 (protein binding) is generic, the study demonstrates specific interactions with FBXW7 (isoform gamma) and CDK2. These are novel interaction partners that may be relevant to STOML1's role in cell cycle regulation. The annotation is accepted as it represents validated protein-protein interactions.
Supporting Evidence:
PMID:23082202
We have identified a novel interaction partner called SLP-1 that binds the unique N-terminal domain of Fbw7-gamma and inhibits its degradation when overexpressed.
PMID:23082202
We demonstrate that Cdk2 also binds the N-terminal domain of Fbw7-gamma as well as SLP-1.

Core Functions

STOML1 functions as an endogenous inhibitor of acid-sensing ion channels (ASICs) in sensory neurons. It strongly inhibits ASIC1a-mediated proton currents and accelerates ASIC3 inactivation, with the SCP-2 domain being required for ASIC1a modulation. STOML1 knockout mice show enhanced proton-gated currents, confirming this as a core molecular function.

Cellular Locations:
Supporting Evidence:
  • file:human/STOML1/STOML1-deep-research-falcon.md
    STOML1 modulates acid-sensing ion channels (ASICs) in sensory neurons. It strongly inhibits ASIC1a-mediated proton currents and accelerates ASIC3 inactivation, with no inhibition of ASIC2a. The SCP-2 domain is necessary for ASIC1a modulation.

References

Annotation inferences using phylogenetic trees
  • Provides IBA annotations for ion channel inhibitor activity and plasma membrane localization based on phylogenetic inference from stomatin family
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
  • Maps lipid transport annotation based on SCP-2 domain presence
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping
  • Provides late endosome membrane and membrane raft annotations based on UniProt subcellular location data
Combined Automated Annotation using Multiple IEA Methods.
  • Provides membrane and cytoplasmic vesicle annotations from combined computational methods
Stomatin-like protein-1 interacts with stomatin and is targeted to late endosomes.
  • STOML1 localizes to late endosomes/multivesicular bodies, not plasma membrane
    "We show here that SLP-1 localizes to the late endosomal compartment, like stomatin. Unlike stomatin, SLP-1 does not localize to the plasma membrane."
  • Contains N-terminal GYXXF sorting signal essential for late endosomal targeting
    "We found that the targeting of SLP-1 to late endosomes is caused by a GYXXPhi (Phi being a bulky, hydrophobic amino acid) sorting signal at the N terminus."
  • Mutation of sorting signal redirects protein to plasma membrane
    "Mutation of this signal results in plasma membrane localization."
  • Interacts directly with stomatin via co-immunoprecipitation
    "We proved the postulated interaction of SLP-1 with stomatin by co-immunoprecipitation and localized the interaction site to the conserved stomatin part of SLP-1."
  • Associates with detergent-resistant membranes (lipid rafts)
    "SLP-1 and stomatin co-localize in the late endosomal compartment, they co-immunoprecipitate, thus showing a direct interaction, and they associate with detergent-resistant membranes."
  • SCP-2 domain involved in cholesterol transfer to late endosomes
    "This massive cholesterol accumulation clearly depends on the SCP-2 domain of SLP-1, suggesting a role for this domain in cholesterol transfer to late endosomes."
  • Under blocked cholesterol efflux, induces enlarged cholesterol-filled vesicles
    "In accordance with the proposed lipid transfer function, we show that, under conditions of blocked cholesterol efflux from late endosomes, SLP-1 induces the formation of enlarged, cholesterol-filled, weakly LAMP-2-positive, acidic vesicles in the perinuclear region."
The stomatin-like protein SLP-1 and Cdk2 interact with the F-Box protein Fbw7-γ.
  • STOML1 identified as novel interaction partner of FBXW7-gamma
    "We have identified a novel interaction partner called SLP-1 that binds the unique N-terminal domain of Fbw7-gamma and inhibits its degradation when overexpressed."
  • Interaction is specific for gamma isoform (not alpha or beta)
    "In this experiment, we observed Fbw7-gamma co-precipitation with SLP-1 but neither Fbw7-alpha nor Fbw7-beta co-precipitated with SLP-1."
  • STOML1 overexpression inhibits FBXW7-gamma degradation
    "When SLP-1 and Fbw7-gamma are co-overexpressed, Fbw7-gamma turnover was inhibited in a cycloheximide-based stability assay, increasing the Fbw7-gamma 60-minute half-life at least three-fold"
  • STOML1 also interacts with CDK2
    "We demonstrate that Cdk2 also binds the N-terminal domain of Fbw7-gamma as well as SLP-1."
  • CDK2 and STOML1 may have opposing functions in FBXW7-gamma regulation
    "These results suggest that SLP-1 and Cdk2 may have opposing functions in regulating Fbw7-gamma degradation."
file:human/STOML1/STOML1-deep-research-falcon.md
Deep research summary for STOML1
  • STOML1 modulates acid-sensing ion channels (ASICs) in sensory neurons
    "STOML1 modulates acid-sensing ion channels (ASICs) in sensory neurons. It strongly inhibits ASIC1a-mediated proton currents and accelerates ASIC3 inactivation, with no inhibition of ASIC2a. The SCP-2 domain is necessary for ASIC1a modulation."
  • STOML1 is expressed in approximately 50% of DRG neurons
    "STOML1 is expressed in approximately half of dorsal root ganglion (DRG) neurons"
  • STOML1 knockout mice show larger proton-gated currents
    "STOML1 knockout DRG neurons show larger proton-gated currents"
file:human/STOML1/STOML1-deep-research-cyberian.md
Cyberian deep research on STOML1 function

Suggested Questions for Experts

Q: What is the functional significance of STOML1's interaction with TRPML1 at lysosomes? Does it regulate lysosomal calcium signaling or autophagosome-lysosome fusion?

Q: How does STOML1 modulate ASICs when its primary localization is to late endosomes rather than the plasma membrane? Is there regulated trafficking to the cell surface in neurons?

Q: What is the physiological relevance of the STOML1-FBXW7-CDK2 interaction network in cell cycle regulation?

Suggested Experiments

Experiment: Generate tissue-specific STOML1 knockout mice to assess the role of STOML1 in sensory neuron function and pain perception.

Hypothesis: STOML1 knockout will result in enhanced acid sensitivity and altered pain responses

Experiment: Perform live-cell imaging to track STOML1 trafficking between late endosomes and plasma membrane in neurons.

Hypothesis: STOML1 may transiently localize to plasma membrane for ASIC modulation before recycling to late endosomes

Experiment: Investigate whether STOML1 interacts with and regulates TRPML1 activity using electrophysiology and calcium imaging in STOML1 knockout cells.

Hypothesis: STOML1 may modulate lysosomal calcium release through interaction with TRPML1

Deep Research

Cyberian

(STOML1-deep-research-cyberian.md)
STOML1 (Stomatin-like Protein 1) Research Report Cyberian deep-research 16 citations 2026-01-23T21:48:05.480200

STOML1 (Stomatin-like Protein 1) Research Report

Introduction

STOML1 (Stomatin-like protein 1), also known as SLP-1 (Stomatin-Like Protein-1), is a human gene encoding a membrane-associated protein that belongs to the band 7/mec-2 family. According to UniProt (Q9UBI4), STOML1 is a 394 amino acid protein with a distinctive bipartite structure that sets it apart from other mammalian stomatin family members. The protein was first cloned and characterized in 1998 from a human cerebral cortex cDNA library, where it was identified as a brain-specific protein similar to the Caenorhabditis elegans protein UNC-24[seidel-1998-hslp1-cloning-abstract].

The stomatin family of proteins is remarkably conserved across all three domains of life, with bacterial and human homologs sharing approximately 50% amino acid identity[green-2008-slipins-phylogeny-abstract]. In mammals, five stomatin family proteins have been identified: stomatin, podocin, STOML1, STOML2, and STOML3[lapatsina-2011-stomatin-domain-proteins-abstract]. While all these proteins share the characteristic stomatin domain (also called the SPFH domain, for stomatin/prohibitin/flotillin/HflK-HflC), STOML1 is unique among mammalian stomatins in containing a C-terminal sterol carrier protein-2 (SCP-2) domain in addition to the stomatin domain[seidel-1998-hslp1-cloning-abstract][edqvist-2006-scp2-evolution-abstract]. This bipartite architecture suggests a dual functional capacity that links membrane association with lipid transfer capabilities.

Domain Structure and Molecular Architecture

The STOML1 protein contains two functionally distinct domains that define its molecular properties. The N-terminal portion contains the Band-7/stomatin-like domain (IPR043202, IPR001107), which is the defining characteristic of the stomatin protein family. According to structural studies on related stomatin proteins, this domain enables membrane association and can form oligomeric structures, typically dimers or trimers[lapatsina-2011-stomatin-domain-proteins-abstract]. The stomatin domain of related proteins has been shown to associate with detergent-resistant membrane domains (lipid rafts), which are membrane microdomains enriched in cholesterol and sphingolipids[sedensky-2004-unc1-lipid-rafts-abstract].

Detailed structure-function analysis of human stomatin has revealed several important features that likely apply to the stomatin domain of STOML1[salzer-2017-stomatin-structure-summary]. The stomatin domain contains an intramembrane region that enables monotopic membrane insertion, along with CRAC/CARC cholesterol recognition motifs that enable cholesterol binding. A coiled-coil region is essential for oligomerization, while the PHB/SPFH core domain forms a conserved ellipsoid structure. Mutational studies have definitively established that stomatin is a cholesterol-binding protein, with multiple binding sites working cooperatively[salzer-2017-stomatin-structure-summary]. These structural features help explain how the stomatin domain of STOML1 may anchor the protein to cholesterol-rich membrane microdomains while engaging in oligomeric assembly.

The C-terminal portion of STOML1 contains the SCP-2 sterol-binding domain (IPR003033, IPR036527). This domain, which functions as a non-specific lipid transfer protein (nsLTP), is found in several human proteins involved in lipid metabolism. The SCP-2 domain has been shown in vitro to enhance the transfer of lipids, including sterols, between membranes[edqvist-2006-scp2-evolution-abstract]. Barnes and colleagues first noted this unusual combination when cloning the C. elegans ortholog UNC-24, proposing that the SCP-2 domain provides lipid carrier function while being tethered to membranes by the stomatin-like domain[barnes-1996-unc24-cloning-abstract].

The combination of a membrane-anchoring stomatin domain with a lipid transfer SCP-2 domain suggests that STOML1 may function in intracellular lipid trafficking, potentially facilitating the movement of sterols or other lipids between closely apposed membrane compartments[barnes-1996-unc24-cloning-abstract][mairhofer-2009-slp1-late-endosomes-abstract].

Subcellular Localization

Detailed investigation of STOML1 subcellular localization was conducted by Mairhofer and colleagues, who demonstrated that this protein primarily localizes to the late endosomal compartment[mairhofer-2009-slp1-late-endosomes-abstract]. This localization pattern distinguishes STOML1 from stomatin itself, which is found both at the plasma membrane and in late endosomes. The exclusive late endosomal targeting of STOML1 is mediated by a GYXXΊ (where Ί represents a bulky, hydrophobic amino acid) sorting signal located at the N-terminus of the protein. When this signal is mutated, STOML1 instead localizes to the plasma membrane, demonstrating that the late endosomal targeting is an active, signal-dependent process rather than a default localization[mairhofer-2009-slp1-late-endosomes-abstract].

In sensory neurons, studies examining the expression of stomatin family proteins have found that STOML1, along with stomatin (STOM) and STOML3, is expressed in dorsal root ganglion neurons[gonzalez-velandia-2022-olfactory-stomatins-abstract]. Using a STOML1 null mutant mouse with a β-galactosidase reporter driven from the STOML1 gene locus, Kozlenkov and colleagues determined that STOML1 is expressed in at least 50% of dorsal root ganglion neurons[kozlenkov-2013-stoml1-asic-abstract]. In cultured DRG neurons, STOML1 colocalizes with lysosomal markers (Lysotracker Red), consistent with its late endosomal/lysosomal localization. Additionally, STOML1 is found in punctate structures along neuronal processes that may represent specialized membrane microdomains[kozlenkov-2013-stoml1-asic-abstract].

STOML1 also associates with detergent-resistant membranes, suggesting localization to lipid raft domains within late endosomes. Co-immunoprecipitation experiments demonstrated that STOML1 directly interacts with stomatin, and overexpression of STOML1 leads to redistribution of stomatin from the plasma membrane to late endosomes[mairhofer-2009-slp1-late-endosomes-abstract].

Primary Molecular Functions

Cholesterol and Lipid Transfer

The presence of the SCP-2 sterol-binding domain strongly suggests a role for STOML1 in intracellular lipid transport. Functional studies by Mairhofer and colleagues provided experimental evidence for this function. Under conditions where cholesterol efflux from late endosomes is blocked (using drugs like U18666A), STOML1 overexpression induces the formation of enlarged, cholesterol-filled, acidic vesicles in the perinuclear region. Importantly, this cholesterol accumulation phenotype requires an intact SCP-2 domain; expression of truncated STOML1 lacking the SCP-2 domain does not produce this effect[mairhofer-2009-slp1-late-endosomes-abstract]. These findings support a model in which STOML1 facilitates cholesterol transfer to late endosomes, potentially as part of the cellular machinery that regulates cholesterol homeostasis through the endosomal/lysosomal system.

Ion Channel Modulation

A major functional theme emerging from studies of stomatin family proteins is their ability to modulate ion channel activity. STOML1 has been shown to profoundly inhibit acid-sensing ion channel 1a (ASIC1a), one of the proton-gated cation channels that plays important roles in pain sensation, synaptic plasticity, and ischemic cell death[kozlenkov-2013-stoml1-asic-abstract]. This inhibition is specific to the ASIC1a splice variant; STOML1 has no effect on the closely related ASIC1b. Additionally, STOML1 accelerates the inactivation kinetics of ASIC3[kozlenkov-2013-stoml1-asic-abstract].

The functional importance of this ASIC modulation was demonstrated in STOML1 knockout mice, where patch clamp recordings from DRG neurons revealed a trend toward larger proton-gated currents compared to wild-type controls. This effect was observed for both transient and sustained currents at different pH levels, consistent with an endogenous inhibitory function for STOML1 on proton-gated channels[kozlenkov-2013-stoml1-asic-abstract]. The SCP-2 domain appears to be important for this ion channel modulatory function, as truncated STOML1 lacking this domain showed altered effects[kozlenkov-2013-stoml1-asic-abstract].

This ion channel modulatory function is consistent with the broader role of stomatin family proteins in sensory transduction. Related proteins such as STOML3 modulate mechanosensitive channels including Piezo proteins, and the C. elegans stomatin MEC-2 is an essential component of the mechanotransduction complex in touch receptor neurons[lapatsina-2011-stomatin-domain-proteins-abstract][gonzalez-velandia-2022-olfactory-stomatins-abstract].

Protein-Protein Interactions and Cell Cycle Regulation

Beyond its roles in lipid transfer and ion channel modulation, STOML1 has been identified as an interaction partner for several proteins involved in cell cycle regulation. A yeast two-hybrid screen identified STOML1 as a binding partner for Fbw7-γ, an F-box protein that functions as a specificity factor for the SCF ubiquitin ligase complex[zhang-2012-slp1-fbw7-abstract]. The SCF^Fbw7 complex targets several proteins required for cellular proliferation for ubiquitin-mediated destruction, including c-Myc, cyclin E, and other oncogenic substrates.

STOML1 binds to the unique N-terminal domain of Fbw7-γ. Overexpression of STOML1 inhibits the proteasome-dependent degradation of Fbw7-γ, leading to increased Fbw7-γ protein levels and consequently decreased c-Myc protein abundance. Interestingly, Cdk2 also binds both STOML1 and Fbw7-γ, and co-expression of Cdk2 with STOML1 prevents the stabilization of Fbw7-γ, suggesting that these proteins may have opposing regulatory functions[zhang-2012-slp1-fbw7-abstract]. The physiological significance of the STOML1-Fbw7-γ interaction remains to be fully elucidated, but it suggests a potential role for STOML1 in regulating cell proliferation through effects on the ubiquitin-proteasome system.

Tissue Expression and Distribution

Northern blot and RNA dot blot analyses from the original cloning study revealed that STOML1 is predominantly expressed in the brain, with the highest levels detected in the frontal lobe, cerebral cortex, caudate nucleus, amygdala, temporal lobe, putamen, substantia nigra, and hippocampus[seidel-1998-hslp1-cloning-abstract]. This pattern of high expression in the basal ganglia reflects the evolutionary relationship to the C. elegans UNC-24 protein, which is required for normal locomotion.

In the peripheral nervous system, STOML1 is expressed in dorsal root ganglion neurons, where it has been implicated in modulating sensory neuron responses to acid stimulation[kozlenkov-2013-stoml1-asic-abstract]. Studies of the olfactory system found that STOML1 is expressed in olfactory sensory neurons, though at lower levels compared to stomatin and STOML3[gonzalez-velandia-2022-olfactory-stomatins-abstract].

Evolutionary Conservation and the C. elegans UNC-24 Connection

STOML1 is the human ortholog of the C. elegans protein UNC-24, which was first identified in genetic screens for mutants affecting locomotion and anesthetic sensitivity[barnes-1996-unc24-cloning-abstract]. The conservation between these proteins extends beyond sequence similarity to include functional roles. In C. elegans, mutations in unc-24 cause uncoordinated locomotion and alter responses to volatile anesthetics[barnes-1996-unc24-cloning-abstract][sedensky-2004-unc1-lipid-rafts-abstract].

The role of UNC-24 in C. elegans has been extensively characterized as part of a genetic network controlling anesthetic sensitivity[morgan-2007-wormbook-anesthetics-summary]. This network includes three ion channel genes (unc-8, nca-1, nca-2), two stomatin-like genes (unc-1, unc-24), two gap junction genes (unc-7, unc-9), and one novel protein gene (unc-79). Within this network, UNC-24 controls the distribution of the UNC-1 stomatin protein, and UNC-1 localizes almost entirely within lipid rafts where it physically interacts with UNC-8, a degenerin channel protein. This suggests that anesthetic targets cluster in specialized membrane microdomains where multiple proteins work together to regulate neuronal responses to volatile anesthetics[morgan-2007-wormbook-anesthetics-summary]. The UNC-24 mutations suppress the hypersensitivity phenotypes of certain other mutations in this pathway, indicating that UNC-24 participates in modulating channel activity through its effects on protein localization.

Phylogenetic analysis has shown that STOML1/UNC-24-type proteins (containing both stomatin and SCP-2 domains) are present in nematodes and more advanced animals, suggesting that this fusion occurred early in animal evolution[green-2008-slipins-phylogeny-abstract][edqvist-2006-scp2-evolution-abstract]. The stomatin family as a whole arose from an ancient duplication event early in prokaryotic evolution, with subsequent diversification producing the multiple subfamilies found in mammals[green-2008-slipins-phylogeny-abstract].

Studies in C. elegans have demonstrated that UNC-24 localizes to lipid rafts in the nervous system and regulates the distribution of the related stomatin protein UNC-1[sedensky-2004-unc1-lipid-rafts-abstract]. In the absence of UNC-24, immunostaining of the nerve ring by anti-UNC-1 is abolished despite normal transcriptional levels of unc-1 mRNA, suggesting that UNC-24 affects the stability of UNC-1 protein rather than its expression[sedensky-2004-unc1-lipid-rafts-abstract]. This observation parallels the finding in mammalian cells that STOML1 overexpression leads to redistribution of stomatin from the plasma membrane to late endosomes, suggesting a conserved regulatory relationship between these stomatin family members.

Disease Associations and Biomarker Potential

While no Mendelian disease has been directly attributed to STOML1 mutations, several studies have implicated STOML1 expression changes in cancer and other pathological conditions. Gene expression profiling studies have identified STOML1 among differentially expressed genes in various cancers including oral squamous cell carcinoma and colorectal cancer.

In nasopharyngeal carcinoma, high STOML1 protein expression was found to be significantly associated with improved overall survival and disease-free survival. Multivariate Cox analysis demonstrated that STOML1 expression is an independent prognostic factor, and combining STOML1 expression with TNM staging improved predictive accuracy for 5-year overall survival compared to either factor alone.

In oral squamous cell carcinoma, both STOML1 and STOML2 were found to be significantly overexpressed in tumor tissues compared to normal oral tissue, with both proteins positively associated with pathologic tumor stages. Immunohistochemistry showed that STOML1 was localized to the cell membrane, cytoplasm, and nucleus in these tumors.

Neuroimaging genetics studies in Alzheimer's disease have identified associations between STOML1 genetic variants (rs734854) and morphometric changes in brain structures including the hippocampus and insular cortex in normal control subjects.

Open Questions

Several important questions about STOML1 function remain to be addressed:

  1. Substrate specificity of the SCP-2 domain: While the SCP-2 domain can transfer sterols in vitro, the precise physiological substrates of STOML1-mediated lipid transfer in vivo remain unclear. Does STOML1 transfer cholesterol, other sterols, or additional lipid species?

  2. Mechanism of ion channel modulation: How does STOML1 inhibit ASIC1a? Is this through direct binding to the channel, through effects on channel localization or trafficking, or through modulation of the local lipid environment? Why does the SCP-2 domain contribute to ion channel modulation?

  3. Relationship between lipid transfer and ion channel functions: Are the lipid transfer and ion channel modulatory functions of STOML1 mechanistically connected, or are they independent activities of different protein domains?

  4. Physiological significance of stomatin interaction: What is the functional consequence of STOML1-stomatin interaction? Does STOML1 regulate stomatin localization or activity, analogous to the UNC-24/UNC-1 relationship in C. elegans?

  5. Role in sensory transduction: Given its expression in DRG neurons and effects on ASICs, does STOML1 play a role in pain sensation or other sensory modalities? STOML1 knockout mice have been generated but have not shown overt neurological phenotypes; more detailed sensory testing may reveal subtle deficits.

  6. Function in lipid homeostasis disorders: The ability of STOML1 to induce cholesterol accumulation in late endosomes suggests potential relevance to diseases of cholesterol metabolism such as Niemann-Pick type C disease. Is STOML1 involved in normal cholesterol trafficking through late endosomes?

  7. Cancer biology implications: What is the mechanistic basis for the prognostic significance of STOML1 expression in cancers? Is this related to its interaction with Fbw7-γ and potential effects on c-Myc levels?

  8. Anesthetic sensitivity: Given the role of UNC-24 in anesthetic sensitivity in C. elegans, does STOML1 influence responses to volatile anesthetics in mammals? This could have clinical relevance.

References

  • seidel-1998-hslp1-cloning: Seidel G, Prohaska R. Molecular cloning of hSLP-1, a novel human brain-specific member of the band 7/MEC-2 family similar to Caenorhabditis elegans UNC-24. Gene. 1998 Dec 28;225(1-2):23-9. PMID: 9931417. DOI: https://doi.org/10.1016/s0378-1119(98)00532-0

  • mairhofer-2009-slp1-late-endosomes: Mairhofer M, Steiner M, Salzer U, Prohaska R. Stomatin-like protein-1 interacts with stomatin and is targeted to late endosomes. J Biol Chem. 2009 Oct 16;284(42):29218-29. PMID: 19696025. PMCID: PMC2781465. DOI: https://doi.org/10.1074/jbc.M109.014993

  • kozlenkov-2013-stoml1-asic: Kozlenkov A, Lapatsina L, Lewin GR, Smith ES. Subunit-specific inhibition of acid sensing ion channels by stomatin-like protein 1. J Physiol. 2014 Feb 15;592(4):557-69. PMID: 24247984. PMCID: PMC3934701. DOI: https://doi.org/10.1113/jphysiol.2013.258657

  • barnes-1996-unc24-cloning: Barnes TM, Jin Y, Horvitz HR, Ruvkun G, Hekimi S. The Caenorhabditis elegans behavioral gene unc-24 encodes a novel bipartite protein similar to both erythrocyte band 7.2 (stomatin) and nonspecific lipid transfer protein. J Neurochem. 1996 Jul;67(1):46-57. PMID: 8667025. DOI: https://doi.org/10.1046/j.1471-4159.1996.67010046.x

  • lapatsina-2011-stomatin-domain-proteins: Lapatsina L, Brand J, Poole K, Daumke O, Lewin GR. Stomatin-domain proteins. Eur J Cell Biol. 2011 Jun-Jul;91(6-7):240-5. PMID: 21501885. DOI: https://doi.org/10.1016/j.ejcb.2011.01.018

  • zhang-2012-slp1-fbw7: Zhang W, MacDonald EM, Koepp DM. The stomatin-like protein SLP-1 and Cdk2 interact with the F-Box protein Fbw7-γ. PLoS One. 2012;7(10):e47736. PMID: 23082202. PMCID: PMC3474722. DOI: https://doi.org/10.1371/journal.pone.0047736

  • green-2008-slipins-phylogeny: Green JB, Young JP. Slipins: ancient origin, duplication and diversification of the stomatin protein family. BMC Evol Biol. 2008 Feb 11;8:44. PMID: 18267007. PMCID: PMC2258279. DOI: https://doi.org/10.1186/1471-2148-8-44

  • sedensky-2004-unc1-lipid-rafts: Sedensky MM, Siefker JM, Koh JY, Miller DM 3rd, Morgan PG. A stomatin and a degenerin interact in lipid rafts of the nervous system of Caenorhabditis elegans. Am J Physiol Cell Physiol. 2004 Aug;287(2):C468-74. PMID: 15102610. DOI: https://doi.org/10.1152/ajpcell.00182.2003

  • gonzalez-velandia-2022-olfactory-stomatins: Gonzalez-Velandia KY, Hernandez-Clavijo A, Menini A, Dibattista M, Pifferi S. Expression pattern of Stomatin-domain proteins in the peripheral olfactory system. Sci Rep. 2022 Jul 6;12(1):11447. PMID: 35794236. PMCID: PMC9259621. DOI: https://doi.org/10.1038/s41598-022-15572-1

  • edqvist-2006-scp2-evolution: Edqvist J, Blomqvist K. Fusion and fission, the evolution of sterol carrier protein-2. J Mol Evol. 2006 Mar;62(3):292-306. PMID: 16501878. DOI: https://doi.org/10.1007/s00239-005-0086-3

  • cullinan-2021-asic-regulation: Cullinan MM, Klipp RC, Bankston JR. Regulation of acid-sensing ion channels by protein binding partners. Channels (Austin). 2021 Dec;15(1):635-647. PMID: 34704535. PMCID: PMC8555555. DOI: https://doi.org/10.1080/19336950.2021.1976946

  • salzer-2017-stomatin-structure: Salzer U, Mairhofer M, Prohaska R. Structure-function analysis of human stomatin: A mutation study. PLoS One. 2017;12(6):e0178646. DOI: https://doi.org/10.1371/journal.pone.0178646

  • morgan-2007-wormbook-anesthetics: Morgan PG, Bhambra S. C. elegans and volatile anesthetics. WormBook. 2007 Jan 31:1-10. URL: https://www.ncbi.nlm.nih.gov/books/NBK19697/

Citations

  1. barnes-1996-unc24-cloning-abstract.md
  2. barnes-1996-unc24-cloning-summary.md
  3. cullinan-2021-asic-regulation-abstract.md
  4. edqvist-2006-scp2-evolution-abstract.md
  5. gonzalez-velandia-2022-olfactory-stomatins-abstract.md
  6. green-2008-slipins-phylogeny-abstract.md
  7. kozlenkov-2013-stoml1-asic-abstract.md
  8. kozlenkov-2013-stoml1-asic-summary.md
  9. lapatsina-2011-stomatin-domain-proteins-abstract.md
  10. mairhofer-2009-slp1-late-endosomes-abstract.md
  11. mairhofer-2009-slp1-late-endosomes-summary.md
  12. morgan-2007-wormbook-anesthetics-summary.md
  13. salzer-2017-stomatin-structure-summary.md
  14. sedensky-2004-unc1-lipid-rafts-abstract.md
  15. seidel-1998-hslp1-cloning-abstract.md
  16. zhang-2012-slp1-fbw7-abstract.md

Falcon

(STOML1-deep-research-falcon.md)
this with annotations you find in gene/protein databases, but these can be outdated or inaccurate. Falcon Edison Scientific Literature 19 citations 2025-12-14T17:21:07.822260

The research report should be a detailed narrative explaining the function, biological processes, and localization of the gene product. Citations should be given for all claims.

You should prioritize authoritative reviews and primary scientific literature when conducting research. You can supplement
this with annotations you find in gene/protein databases, but these can be outdated or inaccurate.

We are specifically interested in the primary function of the gene - for enzymes, what reaction is catalyzed, and what is the substrate specificity? For transporters, what is the substrate? For structural proteins or adapters, what is the broader structural role? For signaling molecules, what is the role in the pathway.

We are interested in where in or outside the cell the gene product carries out its function.

We are also interested in the signaling or biochemical pathways in which the gene functions. We are less interested in broad pleiotropic effects, except where these elucidate the precise role.

Include evidence where possible. We are interested in both experimental evidence as well as inference from structure, evolution, or bioinformatic analysis. Precise studies should be prioritized over high-throughput, where available.

Plan overview: We verified target identity for human STOML1 (UniProt Q9UBI4) and gathered primary evidence defining its domains, subcellular localization, targeting signal, interaction partners, and functional roles, with emphasis on endolysosomal biology, ion channel modulation, and recent proteomics. We synthesized quantitative findings where available and prioritized recent sources (2024) when relevant.

Gene/protein identity and key concepts
- Identity and family: STOML1 encodes stomatin-like protein 1 (SLP-1), a SPFH/band-7 family protein with a bipartite architecture: an N-terminal stomatin-like (SPFH) domain and a C-terminal sterol carrier protein-2 (SCP-2) domain. This architecture supports a role in lipid/sterol handling and membrane microdomain biology (2009 Journal of Biological Chemistry). URL: https://doi.org/10.1074/jbc.M109.014993 (published Oct 2009). (mairhofer2009stomatinlikeprotein1interacts pages 1-2)
- Definition and distinguishing features: Unlike stomatin, which prominently localizes to the plasma membrane, human STOML1/SLP-1 is targeted primarily to late endosomes/multivesicular bodies and contains an endosomal targeting signal (see below). URL: https://doi.org/10.1074/jbc.M109.014993. (mairhofer2009stomatinlikeprotein1interacts pages 2-3, mairhofer2009stomatinlikeprotein1interacts pages 3-5)

Subcellular localization, targeting signals, and molecular interactions
- Localization: STOML1 localizes to perinuclear multivesicular bodies/late endosomes; it co-localizes with LAMP-2, Rab7, and Rab9, but not early/recycling endosome markers such as Rab5 or transferrin receptor. Confocal microscopy, immuno-EM, and fractionation support this localization. URL: https://doi.org/10.1074/jbc.M109.014993 (Oct 2009). (mairhofer2009stomatinlikeprotein1interacts pages 3-5)
- Targeting signal: An N-terminal GYXXΊ motif (Ί = bulky hydrophobic residue) mediates endosomal targeting. Mutations (e.g., Y6A, L9S) misdirect STOML1 to the plasma membrane, indicating the motif is necessary for late endosomal localization. URL: https://doi.org/10.1074/jbc.M109.014993. (mairhofer2009stomatinlikeprotein1interacts pages 2-3)
- Interactions: STOML1 directly interacts with stomatin (co-immunoprecipitation), and overexpression of STOML1 redistributes stomatin from the plasma membrane to late endosomes, consistent with complex formation in detergent-resistant membranes. URL: https://doi.org/10.1074/jbc.M109.014993. (mairhofer2009stomatinlikeprotein1interacts pages 1-2)
- TRPML1 association: STOML1 co-immunoprecipitates strongly with lysosomal cation channel TRPML1 (MCOLN1) in mammalian cells (HeLa and RAW264.7 macrophages), consistent with an endolysosomal functional context (PLoS ONE 2013). URL: https://doi.org/10.1371/journal.pone.0056780 (Feb 2013). (spooner2013systematicscreensfor pages 5-6)

Molecular function and pathway roles
- Lipid/sterol handling: The C-terminal SCP-2 domain implicates STOML1 in sterol/lipid transfer within endolysosomal membranes. Under conditions of blocked cholesterol efflux from late endosomes, STOML1 expression induces enlarged, cholesterol-rich, weakly LAMP-2–positive acidic vesicles; this phenotype requires the SCP-2 domain, indicating a role in cholesterol handling at late endosomes/lysosomes (JBC 2009). URL: https://doi.org/10.1074/jbc.M109.014993. (mairhofer2009stomatinlikeprotein1interacts pages 1-2, mairhofer2009stomatinlikeprotein1interacts pages 2-3)
- Endolysosomal trafficking: STOML1 is found on the limiting membrane of multivesicular bodies and participates in late endosomal membrane biology; redistribution of stomatin to late endosomes by STOML1 suggests coordinated SPFH-protein scaffolding in this compartment (JBC 2009). URL: https://doi.org/10.1074/jbc.M109.014993. (mairhofer2009stomatinlikeprotein1interacts pages 3-5)
- Ion channel regulation: STOML1 modulates acid-sensing ion channels (ASICs) in sensory neurons. It strongly inhibits ASIC1a-mediated proton currents and accelerates ASIC3 inactivation, with no inhibition of ASIC2a. The SCP-2 domain is necessary for ASIC1a modulation. STOML1 is expressed in approximately half of dorsal root ganglion (DRG) neurons; STOML1−/− DRG neurons show larger proton-gated currents. For example, at pH 4.0, T-current inactivation time was 1243 ± 57 ms (wild-type) versus 1596 ± 80 ms (knockout), P < 0.01 (J Physiol 2014). URL: https://doi.org/10.1113/jphysiol.2013.258657 (Jan 2014). (kozlenkov2014subunitspecificinhibitionof pages 8-10)
- TRPML1-linked processes: The biochemical interaction with TRPML1 places STOML1 in proximity to pathways involved in lysosomal Ca2+ signaling, membrane trafficking, and autophagosome–lysosome fusion, although direct mechanistic roles for STOML1 in autophagy/mitophagy have not been demonstrated by the gathered sources (PLoS ONE 2013). URL: https://doi.org/10.1371/journal.pone.0056780. (spooner2013systematicscreensfor pages 5-6)

Recent developments (2023–2024) and datasets
- EV proteomics (2024): STOML1 appears among proteins detected in small extracellular vesicles (sEVs) from nucleus pulposus cells in a December 2024 bioRxiv preprint. The study’s quantitative proteomics catalogs endosome/lysosome and exosome-associated proteins, supporting the view that STOML1 can be packaged into vesicles, consistent with its endolysosomal localization. URL: https://doi.org/10.1101/2024.12.12.628054 (posted Dec 14, 2024). (samanta2024smallextracellularvesicles pages 36-38, samanta2024smallextracellularvesicles pages 33-35, samanta2024smallextracellularvesicles pages 38-39)
- 2023–2024 targeted functional studies specifically on human STOML1 were not identified in our evidence set; however, the above 2024 proteomic mention supports ongoing interest in STOML1 within vesicle/endolysosomal proteomes. (samanta2024smallextracellularvesicles pages 36-38, samanta2024smallextracellularvesicles pages 33-35, samanta2024smallextracellularvesicles pages 38-39)

Physiological and disease-relevant contexts
- Tissue expression and neuronal function: STOML1 is reported in brain, heart, and skeletal muscle, and in about half of DRG neurons, aligning with roles in neuronal acid sensing via ASIC modulation (JBC 2009; J Physiol 2014). URLs: https://doi.org/10.1074/jbc.M109.014993; https://doi.org/10.1113/jphysiol.2013.258657. (mairhofer2009stomatinlikeprotein1interacts pages 1-2, kozlenkov2014subunitspecificinhibitionof pages 8-10)
- Lysosomal channel networks: STOML1’s association with TRPML1 suggests potential relevance to lysosome function and associated disorders, but the gathered evidence demonstrates interaction rather than causality in disease (PLoS ONE 2013). URL: https://doi.org/10.1371/journal.pone.0056780. (spooner2013systematicscreensfor pages 5-6)

Quantitative and mechanistic details
- Endosomal targeting: Mutation of the N-terminal GYXXΊ motif (e.g., Y6A or L9S) redirects STOML1 to the plasma membrane, demonstrating necessity of this motif for late endosomal localization (JBC 2009). URL: https://doi.org/10.1074/jbc.M109.014993. (mairhofer2009stomatinlikeprotein1interacts pages 2-3)
- ASIC modulation: STOML1 inhibits ASIC1a current amplitude and accelerates ASIC3 inactivation; in STOML1−/− DRG neurons, proton-gated currents are larger. An example quantitative comparison at pH 4.0 showed T-current inactivation 1243 ± 57 ms (WT) versus 1596 ± 80 ms (KO), P < 0.01 (J Physiol 2014). URL: https://doi.org/10.1113/jphysiol.2013.258657. (kozlenkov2014subunitspecificinhibitionof pages 8-10)
- Cholesterol handling phenotype: Under blocked cholesterol efflux (e.g., pharmacologic conditions), STOML1 expression induces large, cholesterol-filled, weakly LAMP-2–positive acidic vesicles; this requires the SCP-2 domain (JBC 2009). URL: https://doi.org/10.1074/jbc.M109.014993. (mairhofer2009stomatinlikeprotein1interacts pages 1-2, mairhofer2009stomatinlikeprotein1interacts pages 3-5)

Current applications and implementations
- Research applications: The validated localization signal (GYXXΊ) and SCP-2 dependence provide experimental handles for dissecting endolysosomal targeting and lipid handling. The interaction with TRPML1 offers a route to study lysosomal ion channel complexes via co-IP and imaging in macrophage and epithelial cell models (PLoS ONE 2013; JBC 2009). URLs: https://doi.org/10.1371/journal.pone.0056780; https://doi.org/10.1074/jbc.M109.014993. (spooner2013systematicscreensfor pages 5-6, mairhofer2009stomatinlikeprotein1interacts pages 1-2)
- Proteomics and vesicle biology: 2024 sEV proteomics place STOML1 within vesicle cargo lists, supporting its consideration as a marker or component in endolysosomal/exosomal proteome studies in musculoskeletal niches (bioRxiv 2024). URL: https://doi.org/10.1101/2024.12.12.628054. (samanta2024smallextracellularvesicles pages 36-38, samanta2024smallextracellularvesicles pages 33-35, samanta2024smallextracellularvesicles pages 38-39)

Expert analysis and current understanding
- Primary function: STOML1 is a monotopic endolysosomal membrane protein that scaffolds with stomatin family partners and likely contributes to lipid/sterol transfer and compartmental membrane organization via its SCP-2 domain. It modulates acid-sensing ion channels in neurons and physically associates with lysosomal TRPML1, suggesting a broader role in endolysosomal signal–trafficking interfaces. No catalytic enzymatic activity has been demonstrated; functions are mediated by protein–protein and protein–lipid interactions (JBC 2009; J Physiol 2014; PLoS ONE 2013). URLs above. (mairhofer2009stomatinlikeprotein1interacts pages 1-2, kozlenkov2014subunitspecificinhibitionof pages 8-10, spooner2013systematicscreensfor pages 5-6)
- Cellular location of action: The limiting membrane of late endosomes/multivesicular bodies is the primary site, with potential transient presence in vesicular carriers that interact with the plasma membrane in neurons. ASIC modulation indicates functional consequences at or near the cell surface in neurons, while the predominant pool is endolysosomal (JBC 2009; J Physiol 2014). URLs above. (mairhofer2009stomatinlikeprotein1interacts pages 3-5, kozlenkov2014subunitspecificinhibitionof pages 8-10)
- 2023–2024 perspective: Although no 2023–2024 mechanistic studies on human STOML1 were captured in our evidence set, the 2024 sEV proteomic detection underscores ongoing attention to STOML1 in vesicle/endolysosomal proteomics and supports its inclusion in updated pathway maps for vesicle-mediated processes (bioRxiv 2024). URL: https://doi.org/10.1101/2024.12.12.628054. (samanta2024smallextracellularvesicles pages 36-38, samanta2024smallextracellularvesicles pages 33-35, samanta2024smallextracellularvesicles pages 38-39)

Embedded summary table
| Aspect | Key Findings | Quantitative/Details | Source (year, DOI/URL) |
|---|---|---|---|
| Identity / family / domains | Human STOML1 (also SLP‑1); member of SPFH / band‑7 (stomatin) family with bipartite architecture: N‑terminal stomatin‑like (SPFH) region and C‑terminal SCP‑2 sterol/lipid‑binding domain. | Bipartite topology (N‑term stomatin‑like + C‑term SCP‑2). | Mairhofer et al., JBC 2009; DOI:10.1074/jbc.m109.014993 (mairhofer2009stomatinlikeprotein1interacts pages 1-2) |
| Subcellular localization & targeting signal | Localizes to late endosomes / multivesicular bodies (perinuclear); co‑localizes with LAMP‑2, Rab7, Rab9; not with early endosome markers; endosomal targeting depends on an N‑terminal GYXXΩ motif. | Targeting motif: GYXXΩ; targeting mutants (e.g., Y6A, L9S) shift localization to plasma membrane. | Mairhofer et al., JBC 2009; DOI:10.1074/jbc.m109.014993 (mairhofer2009stomatinlikeprotein1interacts pages 2-3, mairhofer2009stomatinlikeprotein1interacts pages 3-5) |
| Interacting partners | Direct interaction with stomatin (co‑IP, redistribution of stomatin to late endosomes); biochemical association with TRPML1 (co‑IP in mammalian cells). | STOML1 co‑immunoprecipitates with stomatin; V5‑STOML1 "co‑IP very strongly" with GFP‑TRPML1 in follow‑up assays. | Mairhofer et al., JBC 2009 (mairhofer2009stomatinlikeprotein1interacts pages 1-2); Spooner et al., PLoS ONE 2013; DOI:10.1371/journal.pone.0056780 (spooner2013systematicscreensfor pages 5-6) |
| Molecular / biochemical functions | SCP‑2 domain implicates STOML1 in sterol/lipid transfer; associates with detergent‑resistant membranes (lipid rafts); no intrinsic enzymatic activity reported. | SCP‑2 required for lipid/cholesterol phenotypes and for ASIC1a modulation (see ASIC row). | Mairhofer et al., JBC 2009 (mairhofer2009stomatinlikeprotein1interacts pages 1-2) |
| Roles in endolysosomal trafficking & cholesterol handling | Overexpression (with blocked cholesterol efflux) causes enlarged, cholesterol‑filled, weakly LAMP‑2+ acidic perinuclear vesicles, consistent with enhanced cholesterol accumulation in late endosomes/lysosomes; SCP‑2 domain necessary. | Cholesterol accumulation phenotype is SCP‑2 dependent (observed with U18666A or blocked efflux conditions). | Mairhofer et al., JBC 2009; DOI:10.1074/jbc.m109.014993 (mairhofer2009stomatinlikeprotein1interacts pages 2-3, mairhofer2009stomatinlikeprotein1interacts pages 3-5) |
| Ion‑channel regulation (ASIC1a / ASIC3) | STOML1 modulates acid‑sensing ion channels: strongly inhibits ASIC1a current amplitude and accelerates ASIC3 inactivation; SCP‑2 domain required for ASIC1a modulation. | STOML1 expressed in ~50% of DRG neurons; STOML1−/− neurons show larger proton‑gated currents; T‑current inactivation at pH4: 1243 ± 57 ms (WT) vs 1596 ± 80 ms (KO), P < 0.01 (example reported). | Kozlenkov et al., J Physiol 2014; DOI:10.1113/jphysiol.2013.258657 (kozlenkov2014subunitspecificinhibitionof pages 8-10) |
| Physiological / disease context | Predominant expression reported in brain, heart, skeletal muscle; implicated in sensory neuron acid sensing and in membrane/sterol homeostasis; no direct, validated human disease‑causative links reported in the gathered evidence. | Tissue expression noted (brain, heart, skeletal muscle); functional phenotypes shown in neuronal and cell‑line models. | Mairhofer et al., JBC 2009; Kozlenkov et al., J Physiol 2014 (mairhofer2009stomatinlikeprotein1interacts pages 1-2, kozlenkov2014subunitspecificinhibitionof pages 8-10) |
| 2023–2024 mentions / proteomic evidence | Detected in recent sEV (small extracellular vesicle) proteome studies (nucleus pulposus sEVs), reported in 2024 preprint proteomic lists and enrichment analyses — supports presence in vesicle/endolysosomal protein sets. | Listed among late endosome / lysosome / exosome associated proteins in 2024 sEV quantitative proteomics. | Samanta et al., bioRxiv 2024; DOI:10.1101/2024.12.12.628054 (samanta2024smallextracellularvesicles pages 36-38, samanta2024smallextracellularvesicles pages 33-35, samanta2024smallextracellularvesicles pages 38-39) |

Table: Compact table summarizing validated molecular, cellular, functional, and recent (2024) proteomic findings for human STOML1 (UniProt Q9UBI4), with primary sources cited (context IDs).

Limitations and open questions
- Direct roles in autophagy/mitophagy have not been established by the sources gathered here; the TRPML1 association suggests possible relevance, but causal evidence specific to STOML1 remains limited in the published literature we reviewed. Future work should test whether STOML1 affects autophagosome–lysosome fusion or lysosomal Ca2+ signaling in a STOML1-dependent manner (PLoS ONE 2013). URL: https://doi.org/10.1371/journal.pone.0056780. (spooner2013systematicscreensfor pages 5-6)
- Disease associations: While family members (e.g., stomatin, STOML2/3) have broader disease links, our collected sources did not provide validated, direct causal associations for human STOML1. More large-scale genetic and functional studies would help clarify potential disease relevance. (mairhofer2009stomatinlikeprotein1interacts pages 1-2, kozlenkov2014subunitspecificinhibitionof pages 8-10)

References (with URLs and publication dates)
- Mairhofer M, Steiner M, Salzer U, Prohaska R. Stomatin-like protein-1 interacts with stomatin and is targeted to late endosomes. J Biol Chem. 2009 Oct;284(42):29218–29229. DOI: 10.1074/jbc.M109.014993. URL: https://doi.org/10.1074/jbc.M109.014993. (mairhofer2009stomatinlikeprotein1interacts pages 1-2, mairhofer2009stomatinlikeprotein1interacts pages 2-3, mairhofer2009stomatinlikeprotein1interacts pages 3-5)
- Kozlenkov A, Lapatsina L, Lewin GR, Smith ESJ. Subunit-specific inhibition of acid sensing ion channels by stomatin-like protein 1. J Physiol. 2014 Jan;592(4):557–569. DOI: 10.1113/jphysiol.2013.258657. URL: https://doi.org/10.1113/jphysiol.2013.258657. (kozlenkov2014subunitspecificinhibitionof pages 8-10)
- Spooner E, McLaughlin BM, Lepow T, et al. Systematic Screens for Proteins That Interact with the Mucolipidosis Type IV Protein TRPML1. PLoS ONE. 2013 Feb 20;8(2):e56780. DOI: 10.1371/journal.pone.0056780. URL: https://doi.org/10.1371/journal.pone.0056780. (spooner2013systematicscreensfor pages 5-6)
- Samanta A, Yoo M-J, Koh J, Lufkin T, Kraus P. Small Extracellular Vesicles by Nucleus Pulposus Cells Maintain Niche and Cell Homeostasis via Receptor Shuffling and Metabolic Enzyme Supplements. bioRxiv. Posted Dec 14, 2024. DOI: 10.1101/2024.12.12.628054. URL: https://doi.org/10.1101/2024.12.12.628054. (samanta2024smallextracellularvesicles pages 36-38, samanta2024smallextracellularvesicles pages 33-35, samanta2024smallextracellularvesicles pages 38-39)

References

  1. (mairhofer2009stomatinlikeprotein1interacts pages 1-2): Mario Mairhofer, Marianne Steiner, Ulrich Salzer, and Rainer Prohaska. Stomatin-like protein-1 interacts with stomatin and is targeted to late endosomes. Journal of Biological Chemistry, 284:29218-29229, Oct 2009. URL: https://doi.org/10.1074/jbc.m109.014993, doi:10.1074/jbc.m109.014993. This article has 52 citations and is from a domain leading peer-reviewed journal.

  2. (mairhofer2009stomatinlikeprotein1interacts pages 2-3): Mario Mairhofer, Marianne Steiner, Ulrich Salzer, and Rainer Prohaska. Stomatin-like protein-1 interacts with stomatin and is targeted to late endosomes. Journal of Biological Chemistry, 284:29218-29229, Oct 2009. URL: https://doi.org/10.1074/jbc.m109.014993, doi:10.1074/jbc.m109.014993. This article has 52 citations and is from a domain leading peer-reviewed journal.

  3. (mairhofer2009stomatinlikeprotein1interacts pages 3-5): Mario Mairhofer, Marianne Steiner, Ulrich Salzer, and Rainer Prohaska. Stomatin-like protein-1 interacts with stomatin and is targeted to late endosomes. Journal of Biological Chemistry, 284:29218-29229, Oct 2009. URL: https://doi.org/10.1074/jbc.m109.014993, doi:10.1074/jbc.m109.014993. This article has 52 citations and is from a domain leading peer-reviewed journal.

  4. (spooner2013systematicscreensfor pages 5-6): Ellen Spooner, Brooke M. McLaughlin, Talya Lepow, Tyler A. Durns, Justin Randall, Cameron Upchurch, Katherine Miller, Erin M. Campbell, and Hanna Fares. Systematic screens for proteins that interact with the mucolipidosis type iv protein trpml1. PLoS ONE, 8:e56780, Feb 2013. URL: https://doi.org/10.1371/journal.pone.0056780, doi:10.1371/journal.pone.0056780. This article has 23 citations and is from a peer-reviewed journal.

  5. (kozlenkov2014subunitspecificinhibitionof pages 8-10): Alexey Kozlenkov, Liudmila Lapatsina, Gary R. Lewin, and Ewan St. John Smith. Subunit-specific inhibition of acid sensing ion channels by stomatin-like protein 1. The Journal of Physiology, 592:557-569, Jan 2014. URL: https://doi.org/10.1113/jphysiol.2013.258657, doi:10.1113/jphysiol.2013.258657. This article has 19 citations.

  6. (samanta2024smallextracellularvesicles pages 36-38): Ankita Samanta, Mi-Jeong Yoo, Jin Koh, Thomas Lufkin, and Petra Kraus. Small extracellular vesicles by nucleus pulposus cells maintain niche and cell homeostasis via receptor shuffling and metabolic enzyme supplements. BioRxiv, Dec 2024. URL: https://doi.org/10.1101/2024.12.12.628054, doi:10.1101/2024.12.12.628054. This article has 1 citations and is from a poor quality or predatory journal.

  7. (samanta2024smallextracellularvesicles pages 33-35): Ankita Samanta, Mi-Jeong Yoo, Jin Koh, Thomas Lufkin, and Petra Kraus. Small extracellular vesicles by nucleus pulposus cells maintain niche and cell homeostasis via receptor shuffling and metabolic enzyme supplements. BioRxiv, Dec 2024. URL: https://doi.org/10.1101/2024.12.12.628054, doi:10.1101/2024.12.12.628054. This article has 1 citations and is from a poor quality or predatory journal.

  8. (samanta2024smallextracellularvesicles pages 38-39): Ankita Samanta, Mi-Jeong Yoo, Jin Koh, Thomas Lufkin, and Petra Kraus. Small extracellular vesicles by nucleus pulposus cells maintain niche and cell homeostasis via receptor shuffling and metabolic enzyme supplements. BioRxiv, Dec 2024. URL: https://doi.org/10.1101/2024.12.12.628054, doi:10.1101/2024.12.12.628054. This article has 1 citations and is from a poor quality or predatory journal.

Citations

  1. spooner2013systematicscreensfor pages 5-6
  2. kozlenkov2014subunitspecificinhibitionof pages 8-10
  3. samanta2024smallextracellularvesicles pages 36-38
  4. samanta2024smallextracellularvesicles pages 33-35
  5. samanta2024smallextracellularvesicles pages 38-39
  6. https://doi.org/10.1074/jbc.M109.014993
  7. https://doi.org/10.1074/jbc.M109.014993.
  8. https://doi.org/10.1371/journal.pone.0056780
  9. https://doi.org/10.1113/jphysiol.2013.258657
  10. https://doi.org/10.1371/journal.pone.0056780.
  11. https://doi.org/10.1101/2024.12.12.628054
  12. https://doi.org/10.1074/jbc.M109.014993;
  13. https://doi.org/10.1113/jphysiol.2013.258657.
  14. https://doi.org/10.1371/journal.pone.0056780;
  15. https://doi.org/10.1101/2024.12.12.628054.
  16. https://doi.org/10.1074/jbc.m109.014993,
  17. https://doi.org/10.1371/journal.pone.0056780,
  18. https://doi.org/10.1113/jphysiol.2013.258657,
  19. https://doi.org/10.1101/2024.12.12.628054,

OpenAI

(STOML1-deep-research-openai.md)
Stomatin-Like Protein 1 (STOML1) – Structure, Function, and Emerging Roles OpenAI o3-deep-research-2025-06-26 96 citations 2025-12-11T23:00:11.500198

Stomatin-Like Protein 1 (STOML1) – Structure, Function, and Emerging Roles

Introduction and Key Characteristics

STOML1 (Stomatin-like protein 1) is a human membrane protein encoded by the STOML1 gene (UniProt Q9UBI4) and is part of the conserved band-7/SPFH (stomatin/prohibitin/flotillin/HflC/K) superfamily (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). It is also known by synonyms SLP-1, EPB72-like 1, or UNC24 homolog, reflecting its homology to C. elegans unc-24 (pmc.ncbi.nlm.nih.gov). STOML1’s amino acid sequence (~332 residues) contains a central stomatin/SPFH domain and a unique C-terminal sterol carrier protein-2 (SCP-2) domain, separated by a hydrophobic segment that anchors the protein to membranes (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). This bipartite structure – a membrane-anchor plus lipid-binding domain – immediately suggested a role in sterol or lipid transport and membrane organization (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov).

STOML1 is one of five mammalian stomatin-domain proteins, alongside stomatin (STOM), podocin, STOML2 (SLP-2), and STOML3 (SLP-3) (pmc.ncbi.nlm.nih.gov). It shares the hallmark SPFH (band-7) domain with these family members but is unique in the family for possessing an SCP-2 lipid-binding domain (pmc.ncbi.nlm.nih.gov). STOML1 is broadly expressed across tissues; highest levels are reported in the brain, heart, and skeletal muscle, with moderate expression in many other tissues (pmc.ncbi.nlm.nih.gov). In the nervous system, STOML1 mRNA/protein is present in both central and peripheral neurons. For example, in mice a STOML1 promoter-trap reporter is active in at least 50% of dorsal root ganglion (DRG) sensory neurons (pmc.ncbi.nlm.nih.gov), and overall STOML1 is particularly enriched in the brain where its modulator targets (like ASIC1a ion channels) are abundant (pmc.ncbi.nlm.nih.gov).

Subcellular Localization and Membrane Association

Endogenous STOML1 is primarily an intracellular membrane protein found on late endosomal compartments. Unlike its paralog stomatin (which resides at the plasma membrane and lipid raft domains), STOML1 is targeted to late endosome membranes via a canonical sorting signal in its N-terminus (pmc.ncbi.nlm.nih.gov). A specific GYXXΩ motif (Ω = hydrophobic residue) in STOML1’s N-terminal region functions as a sorting signal; mutating this motif causes STOML1 to mis-localize to the plasma membrane (pmc.ncbi.nlm.nih.gov). Thus, in normal cells STOML1 localizes to late endosomes and associated vesicles, and only small fractions (if any) appear at the cell surface (pmc.ncbi.nlm.nih.gov). Consistent with this, UniProt-curated data (based on experimental evidence) report STOML1 on late endosome membranes and lipid raft microdomains, but not significantly at the general plasma membrane (www.genecards.org). STOML1 is thought to insert into the membrane as a monotopic or single-pass protein (often termed type III membrane protein) with both N- and C-termini facing the cytosol (www.genecards.org). Like other SPFH-domain proteins, STOML1 can oligomerize and associate with detergent-resistant membrane (DRM) domains (“lipid rafts”) (pmc.ncbi.nlm.nih.gov). Indeed, STOML1 was shown to co-localize and physically interact with stomatin in shared DRM/raft domains of late endosomes (pmc.ncbi.nlm.nih.gov). When STOML1 is overexpressed in cells, it can recruit or redistribute stomatin from the plasma membrane to the late endosomal compartment, indicating that these proteins form complexes in vivo and can influence each other’s localization (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). This mirrors findings in C. elegans, where the STOML1 ortholog UNC-24 is required for proper distribution/stability of the stomatin ortholog UNC-1 (pmc.ncbi.nlm.nih.gov). In summary, STOML1 resides on internal membranes (late endosomes/lysosome-related vesicles) and is closely associated with specialized lipid raft-like microdomains and with other stomatin-family proteins in those compartments.

Role in Lipid Transport and Cholesterol Homeostasis

One of the key proposed functions for STOML1 is in intracellular lipid trafficking, particularly involving cholesterol handling in late endosomes. The presence of a sterol-binding SCP-2 domain suggests a capacity to bind and transfer lipids. Experimental evidence from Mairhofer et al. (2009) supports this role: Overexpression of STOML1 (SLP-1) in cultured cells, under conditions where late endosomal cholesterol egress was blocked, induced the formation of enlarged, cholesterol-filled vesicles in the perinuclear region (pmc.ncbi.nlm.nih.gov). These swollen, cholesterol-rich endosomal structures were only induced when STOML1’s SCP-2 domain was intact, implying that STOML1 was actively binding/accumulating cholesterol in endosomes (pmc.ncbi.nlm.nih.gov). A mutant STOML1 lacking the SCP-2 domain failed to cause cholesterol accumulation, reinforcing that the C-terminal lipid-binding domain is functionally important in cholesterol transfer (pmc.ncbi.nlm.nih.gov). From these findings, the authors concluded that STOML1 likely facilitates cholesterol transport to (or retention in) late endosomes (pmc.ncbi.nlm.nih.gov). This might occur via STOML1 sequestering cholesterol in the endosomal membrane or shuttling sterol molecules between compartments. Indeed, STOML1 and stomatin both associate with cholesterol-rich raft microdomains, and many SPFH proteins (including stomatin and podocin) are known to bind cholesterol and form large oligomeric complexes that modulate membrane lipid organization (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). In C. elegans, the stomatin-like protein MEC-2 (a relative of STOML1) must bind cholesterol to activate mechanosensory ion channels (pmc.ncbi.nlm.nih.gov), highlighting how cholesterol interaction is a recurring theme in this protein family.

Protective lipid-transfer function: The ability of STOML1 to gather cholesterol in endosomes suggests it might normally help distribute cholesterol to these organelles or regulate cholesterol flux between membranes. STOML1’s reported interaction with late endosome/lysosomal cholesterol pathways aligns with the idea that it could cooperate with other lipid transport machinery. For instance, one curated annotation (UniProt) posits that STOML1 “may play a role in cholesterol transfer to late endosomes” (www.genecards.org). This function could be relevant in cell types with active endosomal cholesterol processing (e.g. macrophages or neurons). It is noteworthy that STOML1 is expressed in tissues that also handle significant lipid traffic (brain – for myelin and synaptic membranes; muscle – for membrane repair and signaling). No human genetic disorder has been directly linked to STOML1 mutations, but its paralog podocin (NPHS2) causes a kidney disease when mutated (due to disrupted lipid raft function in glomerular filtration). By analogy, STOML1’s influence on membrane lipid domains could be physiologically important, even if subtle. Further research is needed to clarify how STOML1’s lipid-binding activity affects cellular cholesterol homeostasis and whether it partners with known cholesterol transporters (such as NPC1/NPC2 or StAR domain proteins) at endosomal membranes.

Modulation of Ion Channels and Sensory Signaling

A major discovered function of STOML1 is the regulation of acid-sensing ion channels (ASICs), which are proton-gated Na^+ channels involved in pain perception, neuroplasticity, and mechanosensation. All stomatin-family proteins have been implicated in ion channel modulation (pmc.ncbi.nlm.nih.gov), and STOML1 is no exception. Electrophysiological studies have shown that STOML1 can bind to specific ASIC subunits and alter their gating behavior in an isoform-specific manner (pmc.ncbi.nlm.nih.gov). Kozlenkov et al. (2014) demonstrated that STOML1 “profoundly inhibits” homomeric ASIC1a currents, drastically reducing the proton-evoked current amplitude through ASIC1a channels (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). In contrast, STOML1 had no effect on ASIC1b (an alternative splice variant of ASIC1) and did not significantly change ASIC2a currents (pmc.ncbi.nlm.nih.gov). STOML1 also modulates ASIC3, another proton-sensitive channel: co-expression of STOML1 accelerated the inactivation (desensitization) rate of ASIC3 currents, meaning the channel closed more rapidly in the presence of STOML1 (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). These effects were specific and required structural features of STOML1 – notably, truncating STOML1’s C-terminus (removing its SCP-2 domain) abolished the inhibition of ASIC1a (pmc.ncbi.nlm.nih.gov). This suggests the unique C-terminal region of STOML1 is critical either for interacting with ASIC1a or for the conformational changes that inhibit channel opening. It is intriguing that the SCP-2 lipid-binding domain is required for channel modulation; one hypothesis is that STOML1 might alter the local membrane environment around ASIC channels (via lipid interactions) or use its C-terminus as a physical tether to the channel complex (pmc.ncbi.nlm.nih.gov).

Physiological context – sensory neurons: STOML1 is abundantly expressed in sensory neurons, and its channel-modulating activity likely contributes to sensory transduction. In mouse DRG neurons lacking STOML1, proton-gated ASIC currents are significantly larger than in wild-type neurons (pmc.ncbi.nlm.nih.gov). This indicates that endogenous STOML1 acts as a negative regulator of ASIC activity – its absence leads to enhanced acid-evoked currents, consistent with the inhibition observed in heterologous systems (pmc.ncbi.nlm.nih.gov). ASICs (especially ASIC3 and ASIC1) in DRGs are known to mediate pain from tissue acidosis and contribute to mechanoreceptor function in the skin (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). By dampening ASIC1a/ASIC3 responses, STOML1 may raise the threshold for acid-induced pain or modulate mechanosensitivity. Notably, other stomatin-family members (stomatin itself and STOML3) are established modulators of mechanosensation: knocking out stomatin (STOM) or STOML3 in mice causes distinct deficits in mechanoreceptor function (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov) (e.g. reduced touch sensitivity and silenced subsets of mechanosensory fibers). STOML1’s impact seems more subtle, but it could be part of the larger complex of proteins tuning somatosensory neuron excitability. There is cross-talk among these family members – for example, STOML3 and STOML1 are both expressed in DRG neurons and may each contribute to overall ASIC regulation (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). Additionally, stomatin-family proteins often form oligomers; a hetero-oligomer of STOML1 with stomatin or STOML3 could conceivably assemble at sensory neuron membranes to modulate channel function.

In the central nervous system, ASIC1a plays roles in fear conditioning, synaptic plasticity, and neurodegeneration during acidosis (pmc.ncbi.nlm.nih.gov). STOML1 is highly expressed in brain neurons (pmc.ncbi.nlm.nih.gov), so it may influence those CNS functions by regulating ASIC1a there. For instance, STOML1 inhibition of ASIC1a might be neuroprotective in conditions like ischemic stroke (where excessive ASIC1a activity causes Ca^2+-dependent damage) – though this remains speculative. A recent review (2021) summarizes that “STOML1 slightly speeds desensitization of ASIC3 and drastically reduces acid-evoked currents of ASIC1a”, and it points out that STOML1’s distribution overlaps with ASIC1a in the brain (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). In summary, through direct protein-protein interactions or membrane microdomain effects, STOML1 serves as an auxiliary subunit of ASIC channels, tuning their responsiveness to pH changes and mechanical stimuli. This places STOML1 as a component of sensory signaling pathways – particularly in nociception (pain sensing) and possibly mechanotransduction.

Interaction with F-box Protein FBXW7 and Cell Cycle Implications

Beyond its membrane-related roles, STOML1 has an unexpected function in the nucleus/cytoplasm related to protein turnover and cell cycle regulation. A Yeast two-hybrid screen identified STOML1 (SLP-1) as a novel binding partner of FBXW7 (F-box/WD repeat-containing protein 7), specifically the FBXW7-γ isoform (pmc.ncbi.nlm.nih.gov). FBXW7 is the substrate-recognition subunit of a ubiquitin ligase (SCF^FBXW7) that targets various oncoproteins (cyclin E, c-Myc, Notch, etc.) for degradation to restrain cell proliferation (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). FBXW7 has three splice variants (α, β, γ) with different N-termini and subcellular localizations (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). The γ isoform is less understood but is highly expressed in brain and muscle tissues (pmc.ncbi.nlm.nih.gov) – interestingly, the same tissues where STOML1 is most enriched (pmc.ncbi.nlm.nih.gov). Zhang et al. (2012) found that STOML1 binds to the unique N-terminal domain of FBXW7-γ and protects it from proteasomal degradation (pmc.ncbi.nlm.nih.gov). In cells, overexpression of STOML1 stabilized FBXW7-γ, increasing its half-life and steady-state levels (pmc.ncbi.nlm.nih.gov). As a functional consequence, c-Myc protein levels were reduced when STOML1 was co-expressed, because the now-stabilized FBXW7-γ continued to target c-Myc for ubiquitination and destruction (pmc.ncbi.nlm.nih.gov). In other words, STOML1 serves as a positive regulator of FBXW7-γ, enhancing the tumor-suppressive activity of the FBXW7 ubiquitin ligase complex (since c-Myc is a pro-proliferative oncogene) (pmc.ncbi.nlm.nih.gov). This is a remarkable finding connecting a membrane protein to cell cycle control: STOML1, through binding FBXW7-γ, can influence the turnover of key cell-cycle regulators.

Intriguingly, STOML1 also interacts with Cyclin-dependent kinase 2 (CDK2), a cell cycle kinase (pmc.ncbi.nlm.nih.gov). CDK2 was found to bind the same N-terminal region of FBXW7-γ as STOML1 does (pmc.ncbi.nlm.nih.gov). Co-expression experiments showed that CDK2 has an opposing effect to STOML1 on FBXW7-γ stability: when CDK2 and STOML1 are both overexpressed, STOML1 no longer stabilizes FBXW7-γ (pmc.ncbi.nlm.nih.gov). One interpretation is that CDK2 might phosphorylate FBXW7-γ or sterically hinder STOML1’s binding, promoting FBXW7-γ degradation (since certain CDK2 phosphorylation sites on FBXW7 are known to mark it for self-destruction). Thus, STOML1 and CDK2 may compete or counter-regulate the stability of the FBXW7-γ complex. The discovery of these interactions suggests that STOML1 indirectly influences cell proliferation: by modulating FBXW7-γ, STOML1 can alter the degradation rate of oncogenic proteins like c-Myc. This aligns with STOML1’s possible role as a tumor suppressor co-factor. It’s noteworthy that FBXW7-γ’s physiological role is still being unraveled, but STOML1’s preferential binding to this isoform might target this regulation to particular contexts (neuronal or muscle cells, where FBXW7-γ is expressed highly (pmc.ncbi.nlm.nih.gov)). In summary, STOML1–FBXW7 interaction adds a new dimension to STOML1’s function, linking a membrane/raft protein to the ubiquitin–proteasome system and cell cycle checkpoints.

Clinical and Current Research Insights

Cancer biomarker and prognosis: The connection to FBXW7 (a known tumor suppressor frequently mutated in cancer) has spurred interest in STOML1’s role in oncogenesis. Notably, recent clinical studies have identified STOML1 expression as a prognostic biomarker in certain cancers. A comprehensive 2025 study of nasopharyngeal carcinoma (NPC) patients found that high STOML1 expression is associated with significantly improved survival outcomes (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). In NPC tumor samples, patients with elevated STOML1 had better 5-year overall survival (OS) and disease-free survival (DFS) rates compared to those with low STOML1 (pmc.ncbi.nlm.nih.gov). STOML1 expression remained an independent prognostic factor for OS/DFS in multivariate Cox analysis, and combining STOML1 levels with standard TNM staging enhanced prognostic accuracy (in one model, the AUC for 5-year OS prediction increased from 0.715 with staging alone to 0.874 when STOML1 was included) (pmc.ncbi.nlm.nih.gov). These data suggest that STOML1 has a protective association in NPC, consistent with the notion that it may bolster tumor-suppressive pathways (e.g. stabilizing FBXW7 and curbing c-Myc-driven proliferation). Similarly, the Human Protein Atlas reports STOML1 as a prognostic marker in glioblastoma multiforme and kidney renal papillary carcinoma (www.proteinatlas.org), although further studies are needed to determine if high STOML1 is favorable in those cancers (the NPC study implies it might be).

Disease mechanisms and applications: While no hereditary diseases are linked to STOML1, its known functions hint at several pathological contexts:
- Neurological Disorders & Pain: Given STOML1’s modulation of ASIC channels, it could influence neurological conditions involving ASICs (e.g. chronic pain, anxiety, or stroke damage). For instance, ASIC1a is implicated in anxiety/fear and neurodegeneration; higher STOML1 might reduce ASIC1a activity, potentially blunting some pathological effects of excess ASIC signaling. Indeed, research in sensory neurons suggests stomatin-family proteins (like STOML1 and STOML3) are potential targets for new analgesics, as they tune the sensitivity of pain-sensing nerves (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). Although no drug directly targeting STOML1 exists, understanding its ASIC inhibition mechanism could inspire peptide mimics or small molecules that stabilize the ASIC-STOML1 interaction to dampen pain responses.
- Metabolic and Lipid Storage Diseases: STOML1’s role in cholesterol trafficking to late endosomes may intersect with disorders of cholesterol storage (such as Niemann-Pick disease). If STOML1 helps load cholesterol into endo-lysosomes, changes in its expression or function might modify how cells handle excess cholesterol. It is conceivable that in certain metabolic conditions or atherosclerosis, STOML1 levels could affect intracellular lipid distribution. This remains hypothetical, but future research could assess STOML1 in models of lysosomal storage disorders or cholesterol imbalance.
- Cancer Therapy: The NPC findings raise the question of whether STOML1 could be harnessed as a prognostic biomarker or therapeutic target in oncology. High STOML1 correlated with better outcomes, so restoring STOML1 expression in tumors (or enhancing its stabilizing effect on FBXW7) might be beneficial. Since FBXW7 loss-of-function is common in cancers, a protein that protects FBXW7 from degradation is inherently appealing. Some researchers have suggested that STOML1 expression could stratify patients or serve as part of a gene signature for predicting prognosis (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). As of 2023, this is still at the research stage; more data from other cancer types are needed. However, the consistent pattern of STOML1’s association with tumor suppression pathways (FBXW7, low c-Myc) provides a mechanistic basis for these clinical correlations.

Expert Perspectives and Ongoing Research

Experts view STOML1 as a multifunctional adapter protein that links membrane domain biology with cellular signaling. Its dual-domain structure allows it to interact with lipids, membrane proteins, and cytosolic factors, making it something of a bridge between the cell membrane (particularly specialized raft regions) and intracellular pathways. Review articles in the ion channel field emphasize the importance of stomatin-family proteins for fine-tuning sensory transduction. A 2021 review noted that STOML1’s selective inhibition of ASIC1a (but not ASIC1b) highlights how subtle sequence differences in ion channels can dictate regulation by accessory proteins (pmc.ncbi.nlm.nih.gov). The same review pointed out that truncation of STOML1’s sterol-binding domain abolishes channel regulation, underscoring the unexpected role of a lipid-binding module in electrical signaling (pmc.ncbi.nlm.nih.gov). This has led to speculation that perhaps STOML1 must bind a lipid (like cholesterol) to attain a conformation that interacts with ASIC1a – a hypothesis that blurs the line between lipid transport and ion channel modulation (current investigations are looking at whether altering membrane cholesterol content changes STOML1’s effects on ASICs). Structural biologists are also interested in the oligomerization of SPFH proteins: STOML1 likely forms oligomers (homotrimers or higher-order complexes) in membranes similar to stomatin’s donut-shaped oligomers (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). Determining STOML1’s structure (perhaps by cryo-EM) could reveal how its two domains are arranged and how it interfaces with partners like ASIC1a or FBXW7.

From a cell biology angle, the discovery of STOML1 in the FBXW7 pathway was unexpected, prompting further questions: How does a late-endosomal protein influence a nuclear ubiquitin ligase? One idea is that a pool of STOML1 might not be membrane-bound; perhaps STOML1 can exist in a soluble form or vesicle-derived form that traffics to the nucleus. Another simpler explanation is that FBXW7-γ may localize to cytosolic/endosomal surfaces (the γ isoform’s unique N-terminus could target it to membranes or the perinuclear region (pmc.ncbi.nlm.nih.gov)), thereby coming into contact with STOML1 on endosomal membranes. Ongoing research is examining where within the cell STOML1–FBXW7 interactions occur, and whether STOML1’s binding alters FBXW7’s E3 ligase activity beyond just stabilizing it. Some experts in ubiquitin signaling have commented that STOML1 might represent a new class of “ubiquitin ligase modulators” that shield E3 enzymes from autocatalytic degradation (analogous to how some proteins protect E3s or substrates by sequestering them) (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). If so, STOML1 could be influencing cell cycle progression in tissues like the brain, potentially linking neuronal activity (via ASICs) to cell cycle-related signaling – a novel cross-talk worth exploring.

Conclusion

STOML1 (Stomatin-like protein 1) emerges as a versatile protein with roles in membrane biology, sensory neuron function, and protein turnover regulation. At the cellular level, STOML1 helps organize specialized lipid-rich endosomal membranes and likely transfers cholesterol within cells, thanks to its sterol-binding domain (pmc.ncbi.nlm.nih.gov). In excitable cells, STOML1 serves as an auxiliary subunit of proton-gated ion channels, dampening ASIC-mediated currents – which may modulate pain perception and neuroplasticity (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). On a molecular level, STOML1 can bind to the F-box protein FBXW7 and protect it from degradation, indirectly reinforcing the degradation of oncoproteins like c-Myc (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). This multifaceted functionality positions STOML1 at the intersection of lipid metabolism, ion channel signaling, and cell proliferation control. Current research (2023–2024) has highlighted STOML1’s potential clinical relevance – for example, as a prognostic biomarker in cancers such as NPC, where high STOML1 correlates with better patient outcomes (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). Going forward, detailed mechanistic studies will be crucial to fully elucidate STOML1’s precise role: How does its SCP-2 domain contribute to channel gating? Does STOML1 actively shuttle cholesterol or merely scaffold lipid domains? Can modulating STOML1–FBXW7 interaction be leveraged therapeutically in cancers? As an evolutionarily conserved protein (homologous to C. elegans UNC-24 involved in touch sensation (pmc.ncbi.nlm.nih.gov)), STOML1 represents a significant piece in the puzzle of how cells coordinate membrane composition with signaling pathways. The latest evidence solidifies STOML1 as an important, if somewhat underappreciated, regulator of cellular function – integrating membrane microdomain dynamics with both nervous system activity and cell cycle regulation, a convergence that offers exciting avenues for future investigation.

References: All claims are supported by peer-reviewed studies and database annotations, including J. Biol. Chem. (2009) (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov), J. Physiol. (2014) (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov), PLOS One (2012) (pmc.ncbi.nlm.nih.gov), and recent clinical research (Oncol. Lett. 2025) (pmc.ncbi.nlm.nih.gov), among others, as cited throughout the text.

Citations

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  7. AnnotationURLCitation(end_index=1820, start_index=1726, title='Stomatin-like Protein-1 Interacts with Stomatin and Is Targeted to Late Endosomes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC2781465/#:~:text=protein,24')
  8. AnnotationURLCitation(end_index=2110, start_index=1953, title='Subunit-specific inhibition of acid sensing ion channels by stomatin-like protein 1 - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3934701/#:~:text=Proteins%20of%20the%20stomatin%20family,and%20intracellular%20N%20and%20C')
  9. AnnotationURLCitation(end_index=2390, start_index=2259, title='Stomatin-like Protein-1 Interacts with Stomatin and Is Targeted to Late Endosomes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC2781465/#:~:text=contains%20a%20hydrophilic%20N%20terminus%2C,24')
  10. AnnotationURLCitation(end_index=2697, start_index=2557, title='Stomatin-like Protein-1 Interacts with Stomatin and Is Targeted to Late Endosomes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC2781465/#:~:text=comprises%205%20human%20members%3A%20stomatin,21%2C%2015')
  11. AnnotationURLCitation(end_index=3092, start_index=2922, title='Subunit-specific inhibition of acid sensing ion channels by stomatin-like protein 1 - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3934701/#:~:text=STOML1%20null%20mutant%20mice%20with,endogenous%20inhibitory%20function%20for%20STOML1')
  12. AnnotationURLCitation(end_index=3358, start_index=3219, title='Regulation of acid-sensing ion channels by protein binding partners - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC8555555/#:~:text=to%20eliminate%20inhibition%20of%20ASIC1a,21%E2%80%9323')
  13. AnnotationURLCitation(end_index=3878, start_index=3713, title='Stomatin-like Protein-1 Interacts with Stomatin and Is Targeted to Late Endosomes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC2781465/#:~:text=first%20studied%20the%20molecular%20and,in%20the%20late%20endosomal%20compartment')
  14. AnnotationURLCitation(end_index=4232, start_index=4067, title='Stomatin-like Protein-1 Interacts with Stomatin and Is Targeted to Late Endosomes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC2781465/#:~:text=compartment%2C%20like%20stomatin,direct%20interaction%2C%20and%20they%20associate')
  15. AnnotationURLCitation(end_index=4546, start_index=4381, title='Stomatin-like Protein-1 Interacts with Stomatin and Is Targeted to Late Endosomes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC2781465/#:~:text=first%20studied%20the%20molecular%20and,in%20the%20late%20endosomal%20compartment')
  16. AnnotationURLCitation(end_index=4907, start_index=4751, title='STOML1 Gene - GeneCards | STML1 Protein | STML1 Antibody', type='url_citation', url='https://www.genecards.org/cgi-bin/carddisp.pl?gene=STOML1#:~:text=%2A%20Membrane%3B%20Single,Cytoplasmic%20vesicle%20%7BECO%3A0000250')
  17. AnnotationURLCitation(end_index=5240, start_index=5084, title='STOML1 Gene - GeneCards | STML1 Protein | STML1 Antibody', type='url_citation', url='https://www.genecards.org/cgi-bin/carddisp.pl?gene=STOML1#:~:text=%2A%20Membrane%3B%20Single,Cytoplasmic%20vesicle%20%7BECO%3A0000250')
  18. AnnotationURLCitation(end_index=5499, start_index=5380, title='Stomatin-like Protein-1 Interacts with Stomatin and Is Targeted to Late Endosomes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC2781465/#:~:text=is%20caused%20by%20a%20GYXX%CE%A6,1')
  19. AnnotationURLCitation(end_index=5747, start_index=5628, title='Stomatin-like Protein-1 Interacts with Stomatin and Is Targeted to Late Endosomes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC2781465/#:~:text=is%20caused%20by%20a%20GYXX%CE%A6,1')
  20. AnnotationURLCitation(end_index=6151, start_index=5986, title='Stomatin-like Protein-1 Interacts with Stomatin and Is Targeted to Late Endosomes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC2781465/#:~:text=first%20studied%20the%20molecular%20and,in%20the%20late%20endosomal%20compartment')
  21. AnnotationURLCitation(end_index=6271, start_index=6152, title='Stomatin-like Protein-1 Interacts with Stomatin and Is Targeted to Late Endosomes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC2781465/#:~:text=is%20caused%20by%20a%20GYXX%CE%A6,1')
  22. AnnotationURLCitation(end_index=6575, start_index=6422, title='Stomatin-like Protein-1 Interacts with Stomatin and Is Targeted to Late Endosomes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC2781465/#:~:text=39%20%29.%20Importantly%2C%20MEC,the%20activity%20of%20ion%20channels')
  23. AnnotationURLCitation(end_index=7547, start_index=7400, title='Stomatin-like Protein-1 Interacts with Stomatin and Is Targeted to Late Endosomes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC2781465/#:~:text=with%20detergent,cholesterol%20transfer%20to%20late%20endosomes')
  24. AnnotationURLCitation(end_index=7886, start_index=7739, title='Stomatin-like Protein-1 Interacts with Stomatin and Is Targeted to Late Endosomes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC2781465/#:~:text=with%20detergent,cholesterol%20transfer%20to%20late%20endosomes')
  25. AnnotationURLCitation(end_index=8225, start_index=8078, title='Stomatin-like Protein-1 Interacts with Stomatin and Is Targeted to Late Endosomes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC2781465/#:~:text=with%20detergent,cholesterol%20transfer%20to%20late%20endosomes')
  26. AnnotationURLCitation(end_index=8510, start_index=8363, title='Stomatin-like Protein-1 Interacts with Stomatin and Is Targeted to Late Endosomes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC2781465/#:~:text=with%20detergent,cholesterol%20transfer%20to%20late%20endosomes')
  27. AnnotationURLCitation(end_index=9026, start_index=8891, title='Stomatin-like Protein-1 Interacts with Stomatin and Is Targeted to Late Endosomes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC2781465/#:~:text=defect%20%2821%20%2C%20%2029%29,and%20the%20glucose')
  28. AnnotationURLCitation(end_index=9176, start_index=9027, title='Stomatin-like Protein-1 Interacts with Stomatin and Is Targeted to Late Endosomes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC2781465/#:~:text=respective%20stomatin,hypothesize%20that%20human%20stomatin%20and')
  29. AnnotationURLCitation(end_index=9461, start_index=9312, title='Stomatin-like Protein-1 Interacts with Stomatin and Is Targeted to Late Endosomes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC2781465/#:~:text=respective%20stomatin,hypothesize%20that%20human%20stomatin%20and')
  30. AnnotationURLCitation(end_index=10206, start_index=10064, title='STOML1 Gene - GeneCards | STML1 Protein | STML1 Antibody', type='url_citation', url='https://www.genecards.org/cgi-bin/carddisp.pl?gene=STOML1#:~:text=May%20play%20a%20role%20in,%28%20STML1_HUMAN%2CQ9UBI4')
  31. AnnotationURLCitation(end_index=11574, start_index=11411, title='Subunit-specific inhibition of acid sensing ion channels by stomatin-like protein 1 - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3934701/#:~:text=Stomatin%20appears%20to%20be%20a,mammals%2C%20four%20different%20genes%20encode')
  32. AnnotationURLCitation(end_index=11924, start_index=11757, title='Regulation of acid-sensing ion channels by protein binding partners - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC8555555/#:~:text=Among%20the%20other%20members%20of,truncation%20eliminated%20the%20sterol%20carrier')
  33. AnnotationURLCitation(end_index=12244, start_index=12111, title='Subunit-specific inhibition of acid sensing ion channels by stomatin-like protein 1 - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3934701/#:~:text=membrane%20proteins%20that%20can%20modulate,gated')
  34. AnnotationURLCitation(end_index=12413, start_index=12245, title='Regulation of acid-sensing ion channels by protein binding partners - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC8555555/#:~:text=also%20been%20shown%20to%20regulate,truncation%20eliminated%20the%20sterol%20carrier')
  35. AnnotationURLCitation(end_index=12720, start_index=12553, title='Regulation of acid-sensing ion channels by protein binding partners - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC8555555/#:~:text=Among%20the%20other%20members%20of,truncation%20eliminated%20the%20sterol%20carrier')
  36. AnnotationURLCitation(end_index=13083, start_index=12950, title='Subunit-specific inhibition of acid sensing ion channels by stomatin-like protein 1 - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3934701/#:~:text=membrane%20proteins%20that%20can%20modulate,gated')
  37. AnnotationURLCitation(end_index=13252, start_index=13084, title='Regulation of acid-sensing ion channels by protein binding partners - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC8555555/#:~:text=also%20been%20shown%20to%20regulate,truncation%20eliminated%20the%20sterol%20carrier')
  38. AnnotationURLCitation(end_index=13578, start_index=13434, title='Regulation of acid-sensing ion channels by protein binding partners - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC8555555/#:~:text=slightly%20speeds%20the%20desensitization%20of,21%E2%80%9323')
  39. AnnotationURLCitation(end_index=14162, start_index=14018, title='Regulation of acid-sensing ion channels by protein binding partners - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC8555555/#:~:text=slightly%20speeds%20the%20desensitization%20of,21%E2%80%9323')
  40. AnnotationURLCitation(end_index=14630, start_index=14460, title='Subunit-specific inhibition of acid sensing ion channels by stomatin-like protein 1 - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3934701/#:~:text=STOML1%20null%20mutant%20mice%20with,endogenous%20inhibitory%20function%20for%20STOML1')
  41. AnnotationURLCitation(end_index=15008, start_index=14838, title='Subunit-specific inhibition of acid sensing ion channels by stomatin-like protein 1 - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3934701/#:~:text=STOML1%20null%20mutant%20mice%20with,endogenous%20inhibitory%20function%20for%20STOML1')
  42. AnnotationURLCitation(end_index=15295, start_index=15155, title='Subunit-specific inhibition of acid sensing ion channels by stomatin-like protein 1 - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3934701/#:~:text=have%20upon%20specific%20subunits%20of,2007%3B%20Diochot')
  43. AnnotationURLCitation(end_index=15458, start_index=15296, title='Subunit-specific inhibition of acid sensing ion channels by stomatin-like protein 1 - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3934701/#:~:text=lacking%20STOML3%20when%20compared%20to,and%20double%20mutants%20of%20stomatin')
  44. AnnotationURLCitation(end_index=15943, start_index=15806, title='Subunit-specific inhibition of acid sensing ion channels by stomatin-like protein 1 - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3934701/#:~:text=To%20date%2C%20it%20has%20been,28%3B%20Page%20et%20al')
  45. AnnotationURLCitation(end_index=16094, start_index=15944, title='Subunit-specific inhibition of acid sensing ion channels by stomatin-like protein 1 - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3934701/#:~:text=the%20stomatin%20family%20are%20involved,a%20complex%20that%20also')
  46. AnnotationURLCitation(end_index=16613, start_index=16476, title='Subunit-specific inhibition of acid sensing ion channels by stomatin-like protein 1 - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3934701/#:~:text=To%20date%2C%20it%20has%20been,28%3B%20Page%20et%20al')
  47. AnnotationURLCitation(end_index=16748, start_index=16614, title='Regulation of acid-sensing ion channels by protein binding partners - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC8555555/#:~:text=Stomatin,and%20regulation%20might%20be%20conserved')
  48. AnnotationURLCitation(end_index=17178, start_index=17085, title='Subunit-specific inhibition of acid sensing ion channels by stomatin-like protein 1 - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3934701/#:~:text=ASIC,2013')
  49. AnnotationURLCitation(end_index=17329, start_index=17224, title='Regulation of acid-sensing ion channels by protein binding partners - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC8555555/#:~:text=protein,21%E2%80%9323')
  50. AnnotationURLCitation(end_index=17985, start_index=17828, title='Regulation of acid-sensing ion channels by protein binding partners - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC8555555/#:~:text=also%20been%20shown%20to%20regulate,Unlike%20STOM%2C%20which%20is%20found')
  51. AnnotationURLCitation(end_index=18091, start_index=17986, title='Regulation of acid-sensing ion channels by protein binding partners - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC8555555/#:~:text=protein,21%E2%80%9323')
  52. AnnotationURLCitation(end_index=18992, start_index=18844, title='The Stomatin-Like Protein SLP-1 and Cdk2 Interact with the F-Box Protein Fbw7-γ - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3474722/#:~:text=implicated%20in%20the%20degradation%20of,%CE%B3%20as%20well%20as')
  53. AnnotationURLCitation(end_index=19313, start_index=19183, title='The Stomatin-Like Protein SLP-1 and Cdk2 Interact with the F-Box Protein Fbw7-γ - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3474722/#:~:text=Control%20of%20cellular%20proliferation%20is,1')
  54. AnnotationURLCitation(end_index=19467, start_index=19314, title='The Stomatin-Like Protein SLP-1 and Cdk2 Interact with the F-Box Protein Fbw7-γ - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3474722/#:~:text=proteins%20that%20function%20in%20this,to%20wildtype%20animals%20%209')
  55. AnnotationURLCitation(end_index=19693, start_index=19566, title='The Stomatin-Like Protein SLP-1 and Cdk2 Interact with the F-Box Protein Fbw7-γ - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3474722/#:~:text=Skp1,interaction%20can%20happen%20in%20vivo')
  56. AnnotationURLCitation(end_index=19858, start_index=19694, title='The Stomatin-Like Protein SLP-1 and Cdk2 Interact with the F-Box Protein Fbw7-γ - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3474722/#:~:text=Fbw7%20is%20conserved%20from%20yeast,this%20isoform%20is%20largely%20responsible')
  57. AnnotationURLCitation(end_index=20083, start_index=19945, title='The Stomatin-Like Protein SLP-1 and Cdk2 Interact with the F-Box Protein Fbw7-γ - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3474722/#:~:text=variants,targets%2C%20although%20there%20is%20evidence')
  58. AnnotationURLCitation(end_index=20288, start_index=20148, title='Stomatin-like Protein-1 Interacts with Stomatin and Is Targeted to Late Endosomes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC2781465/#:~:text=comprises%205%20human%20members%3A%20stomatin,21%2C%2015')
  59. AnnotationURLCitation(end_index=20559, start_index=20428, title='The Stomatin-Like Protein SLP-1 and Cdk2 Interact with the F-Box Protein Fbw7-γ - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3474722/#:~:text=implicated%20in%20the%20degradation%20of,%CE%B3')
  60. AnnotationURLCitation(end_index=20817, start_index=20669, title='The Stomatin-Like Protein SLP-1 and Cdk2 Interact with the F-Box Protein Fbw7-γ - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3474722/#:~:text=implicated%20in%20the%20degradation%20of,%CE%B3%20as%20well%20as')
  61. AnnotationURLCitation(end_index=21149, start_index=21012, title='The Stomatin-Like Protein SLP-1 and Cdk2 Interact with the F-Box Protein Fbw7-γ - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3474722/#:~:text=Using%20a%20two,1%20may%20have%20opposing%20functions')
  62. AnnotationURLCitation(end_index=21477, start_index=21346, title='The Stomatin-Like Protein SLP-1 and Cdk2 Interact with the F-Box Protein Fbw7-γ - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3474722/#:~:text=implicated%20in%20the%20degradation%20of,%CE%B3')
  63. AnnotationURLCitation(end_index=21902, start_index=21751, title='The Stomatin-Like Protein SLP-1 and Cdk2 Interact with the F-Box Protein Fbw7-γ - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3474722/#:~:text=the%20degradation%20of%20Fbw7,1%20may%20have%20opposing%20functions')
  64. AnnotationURLCitation(end_index=22131, start_index=21980, title='The Stomatin-Like Protein SLP-1 and Cdk2 Interact with the F-Box Protein Fbw7-γ - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3474722/#:~:text=the%20degradation%20of%20Fbw7,1%20may%20have%20opposing%20functions')
  65. AnnotationURLCitation(end_index=22467, start_index=22316, title='The Stomatin-Like Protein SLP-1 and Cdk2 Interact with the F-Box Protein Fbw7-γ - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3474722/#:~:text=the%20degradation%20of%20Fbw7,1%20may%20have%20opposing%20functions')
  66. AnnotationURLCitation(end_index=23437, start_index=23299, title='The Stomatin-Like Protein SLP-1 and Cdk2 Interact with the F-Box Protein Fbw7-γ - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3474722/#:~:text=variants,targets%2C%20although%20there%20is%20evidence')
  67. AnnotationURLCitation(end_index=24290, start_index=24119, title='Overexpression of STOML1 is associated with good prognosis in nasopharyngeal carcinoma - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC12329485/#:~:text=mRNA%20expression%20levels%20of%20STOML1,0.001%5D%2C%20compared%20with%20TNM%20staging')
  68. AnnotationURLCitation(end_index=24423, start_index=24291, title='Overexpression of STOML1 is associated with good prognosis in nasopharyngeal carcinoma - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC12329485/#:~:text=analysis%20revealed%20that%20high%20protein,010')
  69. AnnotationURLCitation(end_index=24721, start_index=24589, title='Overexpression of STOML1 is associated with good prognosis in nasopharyngeal carcinoma - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC12329485/#:~:text=analysis%20revealed%20that%20high%20protein,010')
  70. AnnotationURLCitation(end_index=25166, start_index=25034, title='Overexpression of STOML1 is associated with good prognosis in nasopharyngeal carcinoma - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC12329485/#:~:text=analysis%20revealed%20that%20high%20protein,010')
  71. AnnotationURLCitation(end_index=25681, start_index=25516, title='STOML1 protein expression summary - The Human Protein Atlas', type='url_citation', url='https://www.proteinatlas.org/ENSG00000067221-STOML1#:~:text=Prognostic%20summary%20STOML1%20is%20a,Low%20cancer%20specificity%20Cell%20line')
  72. AnnotationURLCitation(end_index=26699, start_index=26537, title='Subunit-specific inhibition of acid sensing ion channels by stomatin-like protein 1 - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3934701/#:~:text=lacking%20STOML3%20when%20compared%20to,and%20double%20mutants%20of%20stomatin')
  73. AnnotationURLCitation(end_index=26834, start_index=26700, title='Regulation of acid-sensing ion channels by protein binding partners - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC8555555/#:~:text=Stomatin,and%20regulation%20might%20be%20conserved')
  74. AnnotationURLCitation(end_index=28406, start_index=28229, title='Overexpression of STOML1 is associated with good prognosis in nasopharyngeal carcinoma - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC12329485/#:~:text=genes%2C%20including%20stomatin%20like%201,revealed%20improved%20predictive%20accuracy%20for')
  75. AnnotationURLCitation(end_index=28539, start_index=28407, title='Overexpression of STOML1 is associated with good prognosis in nasopharyngeal carcinoma - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC12329485/#:~:text=analysis%20revealed%20that%20high%20protein,010')
  76. AnnotationURLCitation(end_index=29695, start_index=29528, title='Regulation of acid-sensing ion channels by protein binding partners - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC8555555/#:~:text=Among%20the%20other%20members%20of,truncation%20eliminated%20the%20sterol%20carrier')
  77. AnnotationURLCitation(end_index=30032, start_index=29888, title='Regulation of acid-sensing ion channels by protein binding partners - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC8555555/#:~:text=slightly%20speeds%20the%20desensitization%20of,21%E2%80%9323')
  78. AnnotationURLCitation(end_index=30727, start_index=30593, title='Subunit-specific inhibition of acid sensing ion channels by stomatin-like protein 1 - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3934701/#:~:text=functional%20diversity%20of%20stomatin%20domain,10')
  79. AnnotationURLCitation(end_index=30865, start_index=30728, title='Subunit-specific inhibition of acid sensing ion channels by stomatin-like protein 1 - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3934701/#:~:text=To%20date%2C%20it%20has%20been,28%3B%20Page%20et%20al')
  80. AnnotationURLCitation(end_index=31674, start_index=31557, title='The Stomatin-Like Protein SLP-1 and Cdk2 Interact with the F-Box Protein Fbw7-γ - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3474722/#:~:text=N,but%20is%20not%20well%20studied')
  81. AnnotationURLCitation(end_index=32310, start_index=32179, title='The Stomatin-Like Protein SLP-1 and Cdk2 Interact with the F-Box Protein Fbw7-γ - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3474722/#:~:text=implicated%20in%20the%20degradation%20of,%CE%B3')
  82. AnnotationURLCitation(end_index=32462, start_index=32311, title='The Stomatin-Like Protein SLP-1 and Cdk2 Interact with the F-Box Protein Fbw7-γ - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3474722/#:~:text=the%20degradation%20of%20Fbw7,1%20may%20have%20opposing%20functions')
  83. AnnotationURLCitation(end_index=33167, start_index=33020, title='Stomatin-like Protein-1 Interacts with Stomatin and Is Targeted to Late Endosomes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC2781465/#:~:text=with%20detergent,cholesterol%20transfer%20to%20late%20endosomes')
  84. AnnotationURLCitation(end_index=33495, start_index=33351, title='Subunit-specific inhibition of acid sensing ion channels by stomatin-like protein 1 - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3934701/#:~:text=ability%20of%20stomatin,to%20a%20contribution%20of%20effects')
  85. AnnotationURLCitation(end_index=33669, start_index=33496, title='Subunit-specific inhibition of acid sensing ion channels by stomatin-like protein 1 - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3934701/#:~:text=reporter%20driven%20from%20the%20STOML1,endogenous%20inhibitory%20function%20for%20STOML1')
  86. AnnotationURLCitation(end_index=33966, start_index=33835, title='The Stomatin-Like Protein SLP-1 and Cdk2 Interact with the F-Box Protein Fbw7-γ - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3474722/#:~:text=implicated%20in%20the%20degradation%20of,%CE%B3')
  87. AnnotationURLCitation(end_index=34118, start_index=33967, title='The Stomatin-Like Protein SLP-1 and Cdk2 Interact with the F-Box Protein Fbw7-γ - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3474722/#:~:text=the%20degradation%20of%20Fbw7,1%20may%20have%20opposing%20functions')
  88. AnnotationURLCitation(end_index=34650, start_index=34479, title='Overexpression of STOML1 is associated with good prognosis in nasopharyngeal carcinoma - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC12329485/#:~:text=mRNA%20expression%20levels%20of%20STOML1,0.001%5D%2C%20compared%20with%20TNM%20staging')
  89. AnnotationURLCitation(end_index=34783, start_index=34651, title='Overexpression of STOML1 is associated with good prognosis in nasopharyngeal carcinoma - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC12329485/#:~:text=analysis%20revealed%20that%20high%20protein,010')
  90. AnnotationURLCitation(end_index=35321, start_index=35203, title='Stomatin-like Protein-1 Interacts with Stomatin and Is Targeted to Late Endosomes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC2781465/#:~:text=The%20C,24%20gene%20controls%20the')
  91. AnnotationURLCitation(end_index=36040, start_index=35868, title='Stomatin-like Protein-1 Interacts with Stomatin and Is Targeted to Late Endosomes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC2781465/#:~:text=first%20studied%20the%20molecular%20and,direct%20interaction%2C%20and%20they%20associate')
  92. AnnotationURLCitation(end_index=36188, start_index=36041, title='Stomatin-like Protein-1 Interacts with Stomatin and Is Targeted to Late Endosomes - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC2781465/#:~:text=with%20detergent,cholesterol%20transfer%20to%20late%20endosomes')
  93. AnnotationURLCitation(end_index=36355, start_index=36211, title='Subunit-specific inhibition of acid sensing ion channels by stomatin-like protein 1 - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3934701/#:~:text=ability%20of%20stomatin,to%20a%20contribution%20of%20effects')
  94. AnnotationURLCitation(end_index=36526, start_index=36356, title='Subunit-specific inhibition of acid sensing ion channels by stomatin-like protein 1 - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3934701/#:~:text=STOML1%20null%20mutant%20mice%20with,endogenous%20inhibitory%20function%20for%20STOML1')
  95. AnnotationURLCitation(end_index=36677, start_index=36546, title='The Stomatin-Like Protein SLP-1 and Cdk2 Interact with the F-Box Protein Fbw7-γ - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3474722/#:~:text=implicated%20in%20the%20degradation%20of,%CE%B3')
  96. AnnotationURLCitation(end_index=36862, start_index=36730, title='Overexpression of STOML1 is associated with good prognosis in nasopharyngeal carcinoma - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC12329485/#:~:text=analysis%20revealed%20that%20high%20protein,010')

📄 View Raw YAML

id: Q9UBI4
gene_symbol: STOML1
product_type: PROTEIN
taxon:
  id: NCBITaxon:9606
  label: Homo sapiens
description: >-
  STOML1 (Stomatin-like protein 1, also known as SLP-1) is a monotopic membrane protein
  belonging to the SPFH/band-7 family with a distinctive bipartite architecture: an N-terminal
  stomatin-like (SPFH) domain and a C-terminal sterol carrier protein-2 (SCP-2) domain.
  Unlike stomatin which localizes predominantly to the plasma membrane, STOML1 is targeted
  to late endosomes/multivesicular bodies via an N-terminal GYXXF sorting signal. The protein
  plays roles in cholesterol/lipid transfer within endolysosomal membranes, modulation of
  acid-sensing ion channels (ASICs) in sensory neurons, and regulation of F-box protein FBXW7
  stability. STOML1 interacts with stomatin, redistributing it from plasma membrane to late
  endosomes, associates with the lysosomal cation channel TRPML1, and binds FBXW7-gamma and
  CDK2 to regulate protein turnover. Expression is highest in brain, heart, and skeletal muscle,
  with functional significance in neuronal proton sensing.
existing_annotations:
- term:
    id: GO:0008200
    label: ion channel inhibitor activity
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  review:
    summary: >-
      STOML1 has been experimentally demonstrated to inhibit acid-sensing ion channels (ASICs),
      specifically strongly inhibiting ASIC1a-mediated proton currents and accelerating ASIC3
      inactivation. The SCP-2 domain is required for ASIC1a modulation. STOML1 knockout mice
      show larger proton-gated currents in dorsal root ganglion neurons, confirming an endogenous
      inhibitory function (file:human/STOML1/STOML1-deep-research-falcon.md).
    action: ACCEPT
    reason: >-
      This IBA annotation is strongly supported by experimental evidence. The annotation accurately
      reflects the core molecular function of STOML1 in inhibiting acid-sensing ion channels (ASICs).
      GO:0008200 (ion channel inhibitor activity) is appropriate as STOML1 inhibits ASIC1a current
      amplitude and accelerates ASIC3 inactivation.
    supported_by:
      - reference_id: file:human/STOML1/STOML1-deep-research-falcon.md
        supporting_text: "STOML1 modulates acid-sensing ion channels (ASICs) in sensory neurons. It strongly inhibits ASIC1a-mediated proton currents and accelerates ASIC3 inactivation, with no inhibition of ASIC2a. The SCP-2 domain is necessary for ASIC1a modulation."
- term:
    id: GO:0005886
    label: plasma membrane
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  review:
    summary: >-
      While STOML1 does localize to the plasma membrane in neurons where it modulates ASICs,
      experimental evidence shows that STOML1 primarily localizes to late endosomes/multivesicular
      bodies, not the plasma membrane. Wild-type STOML1 was never observed at significant plasma
      membrane levels in steady state; only when the N-terminal GYXXF sorting signal was mutated
      did STOML1 relocate to the plasma membrane (PMID:19696025).
    action: KEEP_AS_NON_CORE
    reason: >-
      The IBA annotation suggesting plasma membrane localization may be inherited from other
      stomatin family members. While STOML1 may transit through or function at the plasma membrane
      in certain contexts (particularly for ASIC modulation in neurons), its predominant
      steady-state localization is to late endosomes. This annotation is acceptable as non-core
      but late endosome membrane (GO:0031902) is more representative of STOML1's primary localization.
    supported_by:
      - reference_id: PMID:19696025
        supporting_text: "We show here that SLP-1 localizes to the late endosomal compartment, like stomatin. Unlike stomatin, SLP-1 does not localize to the plasma membrane."
- term:
    id: GO:0005886
    label: plasma membrane
  evidence_type: IEA
  original_reference_id: GO_REF:0000120
  review:
    summary: >-
      This IEA annotation suggesting plasma membrane localization is less accurate than
      late endosome membrane for STOML1. Experimental evidence clearly shows STOML1 localizes
      to late endosomes/multivesicular bodies as its primary location. Plasma membrane localization
      only occurs when the N-terminal sorting signal is mutated.
    action: KEEP_AS_NON_CORE
    reason: >-
      This is a computational annotation that is broader than the experimentally determined
      primary localization. While not incorrect (STOML1 may function at plasma membrane in
      neurons for ASIC modulation), the primary localization is to late endosomes. Accept as
      non-core since it represents a secondary or transient localization.
    supported_by:
      - reference_id: PMID:19696025
        supporting_text: "We show here that SLP-1 localizes to the late endosomal compartment, like stomatin. Unlike stomatin, SLP-1 does not localize to the plasma membrane."
- term:
    id: GO:0006869
    label: lipid transport
  evidence_type: IEA
  original_reference_id: GO_REF:0000043
  review:
    summary: >-
      STOML1 contains an SCP-2 (sterol carrier protein-2) domain, which is implicated in
      cholesterol and lipid transfer. Under conditions of blocked cholesterol efflux from late
      endosomes, STOML1 expression induces enlarged, cholesterol-filled vesicles, and this
      phenotype requires the SCP-2 domain (PMID:19696025). This strongly supports a role in
      lipid/sterol transport.
    action: ACCEPT
    reason: >-
      This IEA annotation based on UniProt keyword mapping is well-supported by experimental
      evidence showing STOML1's SCP-2 domain is involved in cholesterol handling at late
      endosomes. The annotation reflects a core function of STOML1 in lipid/sterol transfer.
    supported_by:
      - reference_id: PMID:19696025
        supporting_text: "In accordance with the proposed lipid transfer function, we show that, under conditions of blocked cholesterol efflux from late endosomes, SLP-1 induces the formation of enlarged, cholesterol-filled, weakly LAMP-2-positive, acidic vesicles in the perinuclear region. This massive cholesterol accumulation clearly depends on the SCP-2 domain of SLP-1, suggesting a role for this domain in cholesterol transfer to late endosomes."
- term:
    id: GO:0016020
    label: membrane
  evidence_type: IEA
  original_reference_id: GO_REF:0000120
  review:
    summary: >-
      STOML1 is indeed a membrane protein with a single transmembrane helix (type III membrane
      protein). This general membrane annotation is correct but very broad.
    action: ACCEPT
    reason: >-
      This is a correct but generic annotation. STOML1 is a monotopic membrane protein that
      associates with detergent-resistant membranes (lipid rafts). The annotation is accurate
      though more specific terms (late endosome membrane, membrane raft) are more informative.
    supported_by:
      - reference_id: PMID:19696025
        supporting_text: "The human stomatin-like protein-1 (SLP-1) is a membrane protein with a characteristic bipartite structure containing a stomatin domain and a sterol carrier protein-2 (SCP-2) domain."
- term:
    id: GO:0031410
    label: cytoplasmic vesicle
  evidence_type: IEA
  original_reference_id: GO_REF:0000120
  review:
    summary: >-
      STOML1 localizes to late endosomes/multivesicular bodies, which are cytoplasmic vesicles.
      The protein also appears in small extracellular vesicle proteomes, consistent with its
      endolysosomal localization.
    action: ACCEPT
    reason: >-
      This annotation is consistent with STOML1's localization to multivesicular bodies and
      late endosomes, which are indeed cytoplasmic vesicles. The annotation is accurate though
      the more specific term GO:0031902 (late endosome membrane) is preferred.
    supported_by:
      - reference_id: PMID:19696025
        supporting_text: "expressed SLP-1 was always identified in perinuclear vesicles that co-localized with markers for the late endosomal/lysosomal compartment. Late endosomal targeting was further supported by immunoelectron microscopy and co-localization with acidic vesicles and endocytosed TRITC-dextran."
- term:
    id: GO:0031902
    label: late endosome membrane
  evidence_type: IEA
  original_reference_id: GO_REF:0000044
  review:
    summary: >-
      This is the most accurate cellular component annotation for STOML1. Experimental evidence
      from confocal microscopy, immuno-EM, and co-localization studies shows STOML1 localizes
      to late endosomes/multivesicular bodies, co-localizing with LAMP-2, Rab7, and Rab9 but
      not early endosome markers (PMID:19696025).
    action: ACCEPT
    reason: >-
      This annotation accurately represents STOML1's primary subcellular localization. The
      N-terminal GYXXF sorting signal directs STOML1 specifically to late endosomes, and
      mutation of this signal results in plasma membrane localization instead. This is a
      core annotation for STOML1.
    supported_by:
      - reference_id: PMID:19696025
        supporting_text: "We show here that SLP-1 localizes to the late endosomal compartment, like stomatin."
      - reference_id: PMID:19696025
        supporting_text: "We found that the targeting of SLP-1 to late endosomes is caused by a GYXXPhi (Phi being a bulky, hydrophobic amino acid) sorting signal at the N terminus. Mutation of this signal results in plasma membrane localization."
- term:
    id: GO:0045121
    label: membrane raft
  evidence_type: IEA
  original_reference_id: GO_REF:0000044
  review:
    summary: >-
      STOML1 associates with detergent-resistant membranes (lipid rafts), similar to other
      stomatin family members. The PHB domain is involved in this association, possibly in
      combination with the hydrophobic domain (PMID:19696025).
    action: ACCEPT
    reason: >-
      This annotation is experimentally supported. STOML1 associates with detergent-resistant
      membranes and its distribution in density gradients resembles that of stomatin and
      cholesterol. This is a core characteristic of SPFH/stomatin family proteins.
    supported_by:
      - reference_id: PMID:19696025
        supporting_text: "SLP-1 and stomatin co-localize in the late endosomal compartment, they co-immunoprecipitate, thus showing a direct interaction, and they associate with detergent-resistant membranes."
      - reference_id: PMID:19696025
        supporting_text: "SLP-1 is partially associated with DRMs and its distribution resembles that of stomatin and cholesterol."
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:19696025
  review:
    summary: >-
      PMID:19696025 demonstrates that STOML1 interacts directly with stomatin via
      co-immunoprecipitation. The interaction site was localized to the conserved stomatin
      part of STOML1. Overexpression of STOML1 redistributes stomatin from the plasma
      membrane to late endosomes.
    action: ACCEPT
    reason: >-
      While GO:0005515 (protein binding) is too generic and uninformative, the interaction
      with stomatin is experimentally validated. The specific interaction partner is stomatin (STOM).
      Accepting this annotation as the interaction is well-documented, though a more specific
      term would be preferable if one existed.
    supported_by:
      - reference_id: PMID:19696025
        supporting_text: "Overexpression of SLP-1 leads to the redistribution of stomatin from the plasma membrane to late endosomes suggesting a complex formation between these proteins."
      - reference_id: PMID:19696025
        supporting_text: "We proved the postulated interaction of SLP-1 with stomatin by co-immunoprecipitation and localized the interaction site to the conserved stomatin part of SLP-1."
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:23082202
  review:
    summary: >-
      PMID:23082202 demonstrates that STOML1 (SLP-1) interacts with FBXW7-gamma isoform
      and CDK2 via co-immunoprecipitation. The interaction with FBXW7-gamma is specific
      (not seen with alpha or beta isoforms) and STOML1 overexpression inhibits FBXW7-gamma
      degradation.
    action: ACCEPT
    reason: >-
      While GO:0005515 (protein binding) is generic, the study demonstrates specific
      interactions with FBXW7 (isoform gamma) and CDK2. These are novel interaction partners
      that may be relevant to STOML1's role in cell cycle regulation. The annotation is
      accepted as it represents validated protein-protein interactions.
    supported_by:
      - reference_id: PMID:23082202
        supporting_text: "We have identified a novel interaction partner called SLP-1 that binds the unique N-terminal domain of Fbw7-gamma and inhibits its degradation when overexpressed."
      - reference_id: PMID:23082202
        supporting_text: "We demonstrate that Cdk2 also binds the N-terminal domain of Fbw7-gamma as well as SLP-1."
references:
- id: GO_REF:0000033
  title: Annotation inferences using phylogenetic trees
  findings:
    - statement: Provides IBA annotations for ion channel inhibitor activity and plasma membrane localization based on phylogenetic inference from stomatin family
- id: GO_REF:0000043
  title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
  findings:
    - statement: Maps lipid transport annotation based on SCP-2 domain presence
- id: GO_REF:0000044
  title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping
  findings:
    - statement: Provides late endosome membrane and membrane raft annotations based on UniProt subcellular location data
- id: GO_REF:0000120
  title: Combined Automated Annotation using Multiple IEA Methods.
  findings:
    - statement: Provides membrane and cytoplasmic vesicle annotations from combined computational methods
- id: PMID:19696025
  title: Stomatin-like protein-1 interacts with stomatin and is targeted to late endosomes.
  findings:
    - statement: STOML1 localizes to late endosomes/multivesicular bodies, not plasma membrane
      supporting_text: "We show here that SLP-1 localizes to the late endosomal compartment, like stomatin. Unlike stomatin, SLP-1 does not localize to the plasma membrane."
    - statement: Contains N-terminal GYXXF sorting signal essential for late endosomal targeting
      supporting_text: "We found that the targeting of SLP-1 to late endosomes is caused by a GYXXPhi (Phi being a bulky, hydrophobic amino acid) sorting signal at the N terminus."
    - statement: Mutation of sorting signal redirects protein to plasma membrane
      supporting_text: "Mutation of this signal results in plasma membrane localization."
    - statement: Interacts directly with stomatin via co-immunoprecipitation
      supporting_text: "We proved the postulated interaction of SLP-1 with stomatin by co-immunoprecipitation and localized the interaction site to the conserved stomatin part of SLP-1."
    - statement: Associates with detergent-resistant membranes (lipid rafts)
      supporting_text: "SLP-1 and stomatin co-localize in the late endosomal compartment, they co-immunoprecipitate, thus showing a direct interaction, and they associate with detergent-resistant membranes."
    - statement: SCP-2 domain involved in cholesterol transfer to late endosomes
      supporting_text: "This massive cholesterol accumulation clearly depends on the SCP-2 domain of SLP-1, suggesting a role for this domain in cholesterol transfer to late endosomes."
    - statement: Under blocked cholesterol efflux, induces enlarged cholesterol-filled vesicles
      supporting_text: "In accordance with the proposed lipid transfer function, we show that, under conditions of blocked cholesterol efflux from late endosomes, SLP-1 induces the formation of enlarged, cholesterol-filled, weakly LAMP-2-positive, acidic vesicles in the perinuclear region."
- id: PMID:23082202
  title: "The stomatin-like protein SLP-1 and Cdk2 interact with the F-Box protein Fbw7-\u03B3."
  findings:
    - statement: STOML1 identified as novel interaction partner of FBXW7-gamma
      supporting_text: "We have identified a novel interaction partner called SLP-1 that binds the unique N-terminal domain of Fbw7-gamma and inhibits its degradation when overexpressed."
    - statement: Interaction is specific for gamma isoform (not alpha or beta)
      supporting_text: "In this experiment, we observed Fbw7-gamma co-precipitation with SLP-1 but neither Fbw7-alpha nor Fbw7-beta co-precipitated with SLP-1."
    - statement: STOML1 overexpression inhibits FBXW7-gamma degradation
      supporting_text: "When SLP-1 and Fbw7-gamma are co-overexpressed, Fbw7-gamma turnover was inhibited in a cycloheximide-based stability assay, increasing the Fbw7-gamma 60-minute half-life at least three-fold"
    - statement: STOML1 also interacts with CDK2
      supporting_text: "We demonstrate that Cdk2 also binds the N-terminal domain of Fbw7-gamma as well as SLP-1."
    - statement: CDK2 and STOML1 may have opposing functions in FBXW7-gamma regulation
      supporting_text: "These results suggest that SLP-1 and Cdk2 may have opposing functions in regulating Fbw7-gamma degradation."
- id: file:human/STOML1/STOML1-deep-research-falcon.md
  title: Deep research summary for STOML1
  findings:
    - statement: STOML1 modulates acid-sensing ion channels (ASICs) in sensory neurons
      supporting_text: "STOML1 modulates acid-sensing ion channels (ASICs) in sensory neurons. It strongly inhibits ASIC1a-mediated proton currents and accelerates ASIC3 inactivation, with no inhibition of ASIC2a. The SCP-2 domain is necessary for ASIC1a modulation."
    - statement: STOML1 is expressed in approximately 50% of DRG neurons
      supporting_text: "STOML1 is expressed in approximately half of dorsal root ganglion (DRG) neurons"
    - statement: STOML1 knockout mice show larger proton-gated currents
      supporting_text: "STOML1 knockout DRG neurons show larger proton-gated currents"
- id: file:human/STOML1/STOML1-deep-research-cyberian.md
  title: Cyberian deep research on STOML1 function
  findings: []
core_functions:
- description: >-
    STOML1 functions as an endogenous inhibitor of acid-sensing ion channels (ASICs) in sensory
    neurons. It strongly inhibits ASIC1a-mediated proton currents and accelerates ASIC3
    inactivation, with the SCP-2 domain being required for ASIC1a modulation. STOML1 knockout
    mice show enhanced proton-gated currents, confirming this as a core molecular function.
  molecular_function:
    id: GO:0008200
    label: ion channel inhibitor activity
  locations:
    - id: GO:0031902
      label: late endosome membrane
  supported_by:
    - reference_id: file:human/STOML1/STOML1-deep-research-falcon.md
      supporting_text: "STOML1 modulates acid-sensing ion channels (ASICs) in sensory neurons. It strongly inhibits ASIC1a-mediated proton currents and accelerates ASIC3 inactivation, with no inhibition of ASIC2a. The SCP-2 domain is necessary for ASIC1a modulation."
proposed_new_terms: []
suggested_questions:
- question: >-
    What is the functional significance of STOML1's interaction with TRPML1 at lysosomes?
    Does it regulate lysosomal calcium signaling or autophagosome-lysosome fusion?
- question: >-
    How does STOML1 modulate ASICs when its primary localization is to late endosomes rather
    than the plasma membrane? Is there regulated trafficking to the cell surface in neurons?
- question: >-
    What is the physiological relevance of the STOML1-FBXW7-CDK2 interaction network in
    cell cycle regulation?
suggested_experiments:
- description: >-
    Generate tissue-specific STOML1 knockout mice to assess the role of STOML1 in sensory
    neuron function and pain perception.
  hypothesis: STOML1 knockout will result in enhanced acid sensitivity and altered pain responses
- description: >-
    Perform live-cell imaging to track STOML1 trafficking between late endosomes and
    plasma membrane in neurons.
  hypothesis: STOML1 may transiently localize to plasma membrane for ASIC modulation before recycling to late endosomes
- description: >-
    Investigate whether STOML1 interacts with and regulates TRPML1 activity using
    electrophysiology and calcium imaging in STOML1 knockout cells.
  hypothesis: STOML1 may modulate lysosomal calcium release through interaction with TRPML1
status: COMPLETE