TFRC encodes transferrin receptor protein 1 (TfR1/CD71), the major cell-surface receptor for cellular iron import. It is a homodimeric type II transmembrane glycoprotein that preferentially binds diferric (holo-)transferrin and internalizes the ligand-receptor complex via clathrin/AP-2-mediated endocytosis; iron is released in acidic endosomes (pH <= 5.5) and the apo-transferrin/TfR1 complex is recycled to the plasma membrane, completing the cycle in approximately 10-20 minutes. Internalization depends on the cytoplasmic tyrosine-based YTRF motif, and germline variants affecting this region cause an internalization defect and combined immunodeficiency, identifying TfR1 as a non-redundant immune-metabolic checkpoint that supplies iron for lymphocyte proliferation and mitochondrial metabolism. A proteolytically shed soluble ectodomain (sTfR) circulates and serves as a clinical biomarker of iron demand/erythropoiesis. TfR1 is also exploited pathologically as an entry receptor by several viruses/pathogens and is a leading target for receptor-mediated transcytosis across the blood-brain barrier and for CD71-based cancer-targeted delivery.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0006826
iron ion transport
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: TfR1 is the major cell-surface receptor mediating cellular iron import by binding diferric transferrin and internalizing the ligand-receptor complex. Iron ion transport is a correct high-level process term for this receptor.
Reason: Core biological process supported by phylogenetic inference and directly corroborated by falcon deep research describing TfR1-mediated iron import.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-perplexity.md
See deep research file for comprehensive analysis
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0006879
intracellular iron ion homeostasis
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: By controlling the rate of transferrin-bound iron import into the cell, TfR1 is a central determinant of intracellular iron levels, and its own expression is feedback-regulated by cellular iron status via IRE/IRP control of its mRNA.
Reason: Core process consistent with phylogenetic inference and the receptor's defining iron-import function; corroborated by deep research describing TfR1 as the major receptor for cellular iron import.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0009897
external side of plasma membrane
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: TfR1 is a type II transmembrane protein whose large C-terminal ectodomain (residues 89-760) faces the extracellular space, where it binds holo-transferrin at the cell surface. The external side of plasma membrane is the correct location for the ligand-binding ectodomain.
Reason: Consistent with UniProt topology (extracellular ligand-binding domain) and with the cell-surface receptor function supported by phylogenetic inference.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0046718
symbiont entry into host cell
|
IEA
GO_REF:0000108 |
KEEP AS NON CORE |
Summary: TfR1 is exploited as a cell-entry receptor by several pathogens, including New World hemorrhagic fever arenaviruses (Machupo, Junin, Guanarito), rabies virus, and Plasmodium vivax reticulocyte invasion. This term captures the host-factor role in symbiont/pathogen entry.
Reason: A genuine but pathogen-exploited (non-core) role distinct from the physiological iron-uptake function; supported by experimental structural studies of arenavirus and P. vivax interactions with TfR1 and by UniProt microbial-infection annotations.
Supporting Evidence:
PMID:20208545
The GP1 subunit of the surface glycoprotein mediates cell attachment through transferrin receptor 1 (TfR1)
PMID:29302006
Transferrin receptor 1 is a reticulocyte-specific receptor for Plasmodium vivax
|
|
GO:0001618
virus receptor activity
|
IEA
GO_REF:0000043 |
KEEP AS NON CORE |
Summary: Human TfR1 serves as a cell-surface entry receptor for several viruses, including New World hemorrhagic fever arenaviruses (which engage the apical TfR1 domain via their GP1 glycoprotein) and rabies virus. This is a bona fide virus receptor activity.
Reason: Well-documented but pathogen-exploited (non-core) molecular function distinct from the physiological transferrin receptor activity; structurally demonstrated for arenaviruses and annotated for rabies/SARS-CoV-2 in UniProt.
Supporting Evidence:
PMID:20208545
The GP1 subunit of the surface glycoprotein mediates cell attachment through transferrin receptor 1 (TfR1)
|
|
GO:0004998
transferrin receptor activity
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Transferrin receptor activity is the core molecular function of TFRC. The homodimeric receptor preferentially binds diferric (holo-)transferrin and internalizes the ligand-receptor complex for iron delivery.
Reason: Defining molecular function, also supported by multiple IDA annotations and corroborated by falcon deep research.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
file:human/TFRC/TFRC-deep-research-falcon.md
preferentially binds diferric transferrin
|
|
GO:0005576
extracellular region
|
IEA
GO_REF:0000044 |
KEEP AS NON CORE |
Summary: A proteolytically shed soluble ectodomain of TfR1 (sTfR) circulates in serum, consistent with localization to the extracellular region. This is a broad UniProt subcellular-location mapping that captures the shed soluble form.
Reason: Correct broad location for the shed soluble receptor (sTfR) rather than the core membrane receptor; supported by characterization of the released soluble receptor in serum/culture medium.
Supporting Evidence:
PMID:1871153
Characterization of transferrin receptor released by K562 erythroleukemia cells.
|
|
GO:0005886
plasma membrane
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: TfR1 is a type II transmembrane glycoprotein localized at the plasma membrane, where it binds diferric transferrin at the cell surface before internalization.
Reason: Primary subcellular location of the receptor, supported by extensive IDA/TAS evidence and corroborated by falcon deep research describing TfR1 as a cell-surface receptor.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0006897
endocytosis
|
IEA
GO_REF:0000043 |
MODIFY |
Summary: TfR1 is internalized with its transferrin ligand by clathrin-mediated endocytosis. This is a high-level parent of the more specific receptor-mediated endocytosis term that is also annotated.
Reason: Correct but more general than warranted; the specific mechanism is clathrin/AP-2 receptor-mediated endocytosis, which is independently annotated. Replace with the more informative child term.
Proposed replacements:
receptor-mediated endocytosis
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic endosomes, and recycles apo-transferrin/TfR1 to the surface
|
|
GO:0006898
receptor-mediated endocytosis
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: TfR1 internalizes diferric transferrin via clathrin/AP-2-mediated endocytosis, a canonical example of receptor-mediated endocytosis central to the iron uptake cycle.
Reason: Well-established trafficking mechanism, also supported by IDA evidence and by falcon deep research describing the clathrin/AP-2 endocytic cycle.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic endosomes, and recycles apo-transferrin/TfR1 to the surface
|
|
GO:0007165
signal transduction
|
IEA
GO_REF:0000043 |
MARK AS OVER ANNOTATED |
Summary: This very general process term is assigned from UniProt keyword mapping. While TfR1 has reported signaling roles (e.g. modulating JNK signaling via stearoylation and contributing to IKK-NF-kB signaling), the bare "signal transduction" term is uninformative and not a core function.
Reason: Over-general keyword-derived term; the receptor's defining role is iron uptake, and its specific signaling contributions (JNK regulation, NF-kB) are better captured by the dedicated IMP annotations rather than a bare signal-transduction term.
Supporting Evidence:
PMID:23016877
Taken together, these results indicate a new function for TfR1 in the control of IKK and NF-ÎșB.
|
|
GO:0033572
transferrin transport
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: TfR1 mediates transferrin transport by binding holo-transferrin, internalizing it, releasing iron in acidic endosomes, and recycling apo-transferrin back to the cell surface.
Reason: Core process consistent with the transferrin endocytic recycling cycle described in falcon deep research.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic endosomes, and recycles apo-transferrin/TfR1 to the surface
|
|
GO:0042470
melanosome
|
IEA
GO_REF:0000044 |
KEEP AS NON CORE |
Summary: TfR1 has been detected in melanosome proteomes, the basis for this UniProt location mapping. This likely reflects co-purification of endosomal/recycling membranes with melanosomes rather than a dedicated melanosomal function.
Reason: Derived from high-throughput melanosome proteomics; not a core localization but plausible given TfR1's broad presence on endosomal/recycling membranes that overlap with the melanosome maturation pathway. Retained as non-core.
|
|
GO:0060586
multicellular organismal-level iron ion homeostasis
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Beyond cell-autonomous iron handling, TfR1 contributes to organism-level iron homeostasis: TfR1-knockout mice die in utero with severe anemia, and TfR1 participates in the HFE/TfR2 hepcidin-regulatory axis sensing body iron status.
Reason: Supported experimentally by the requirement of TfR1 for erythropoiesis in vivo and by its role in the HFE-dependent iron-sensing system; also independently annotated by IDA (PMID:26642240).
Supporting Evidence:
PMID:10192390
Transferrin receptor is necessary for development of erythrocytes and the nervous system.
|
|
GO:0001666
response to hypoxia
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: TFRC is a well-established HIF target gene whose expression is induced under hypoxia (it contains a functional hypoxia-response element), consistent with a response to hypoxia. This term was transferred from experimentally annotated orthologs.
Reason: Biologically plausible (TFRC is HIF-regulated and induced by hypoxia) but a regulatory/response role downstream of the core iron-uptake function rather than a defining activity; retained as non-core.
|
|
GO:0005615
extracellular space
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: The shed soluble transferrin receptor (sTfR) is released into serum and the extracellular space, consistent with this localization.
Reason: Reflects the shed soluble ectodomain rather than the membrane receptor's core function; supported by characterization of the released soluble receptor.
Supporting Evidence:
PMID:1871153
Characterization of transferrin receptor released by K562 erythroleukemia cells.
|
|
GO:0005768
endosome
|
IEA
GO_REF:0000107 |
ACCEPT |
Summary: TfR1 traffics through endosomes during the transferrin cycle, where iron is released at acidic pH before receptor recycling. Endosome is a correct location.
Reason: Core compartment of the iron-release/recycling cycle; consistent with multiple IDA endosome annotations and with the trafficking cycle described in deep research.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
acidic endosomes (pH †5.5)
|
|
GO:0005769
early endosome
|
IEA
GO_REF:0000107 |
ACCEPT |
Summary: After clathrin-mediated internalization, the TfR1-transferrin complex traffics to acidic (early) endosomes where iron is released at pH <= 5.5 before receptor recycling.
Reason: Consistent with the endosomal step of the iron-release cycle described in falcon deep research.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
acidic endosomes (pH †5.5)
|
|
GO:0005905
clathrin-coated pit
|
IEA
GO_REF:0000107 |
ACCEPT |
Summary: TfR1 concentrates in clathrin-coated pits as cargo for clathrin/AP-2-mediated endocytosis, the entry point of the iron uptake cycle.
Reason: Consistent with the clathrin/AP-2 endocytic mechanism described in falcon deep research and with the IDA clathrin-coated pit annotation.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic endosomes, and recycles apo-transferrin/TfR1 to the surface
|
|
GO:0006953
acute-phase response
|
IEA
GO_REF:0000107 |
REMOVE |
Summary: This term was transferred from an ortholog. There is no strong direct evidence that human TfR1 functions in the acute-phase response; TFRC expression is more directly tied to iron status, proliferation, and hypoxia than to acute-phase inflammation.
Reason: Weakly supported ortholog-transferred annotation with no specific human experimental backing; not part of the receptor's established functional repertoire and risks over-annotation.
|
|
GO:0007584
response to nutrient
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: TFRC expression and surface levels respond to the cell's nutrient/iron status, broadly consistent with a response to nutrient. This is an ortholog-transferred term subsumed by the more specific response-to-iron annotation.
Reason: Plausible but generic response term that is better captured by the specific response-to-iron-ion annotation; retained as non-core.
|
|
GO:0009897
external side of plasma membrane
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: TfR1 is a type II transmembrane protein whose large C-terminal ectodomain faces the extracellular space and binds holo-transferrin at the cell surface. The external side of plasma membrane is the correct location for the ligand-binding ectodomain.
Reason: Consistent with UniProt topology and the cell-surface receptor function; duplicates the accepted IBA annotation of the same term.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0009986
cell surface
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: TfR1 (CD71) is a canonical cell-surface receptor displayed on the plasma membrane, where it binds circulating holo-transferrin.
Reason: Defining surface localization of the receptor; also supported by ISS/IDA cell surface annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0010039
response to iron ion
|
IEA
GO_REF:0000107 |
ACCEPT |
Summary: TFRC mRNA contains iron-responsive elements (IREs) in its 3' UTR; under iron depletion, IRP1/IRP2 binding stabilizes the transcript and increases receptor expression, while iron repletion lowers it. TfR1 expression is thus directly responsive to cellular iron levels.
Reason: Well-established IRE/IRP-mediated regulation of TFRC by iron status makes response to iron ion a genuine and informative process annotation.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-perplexity.md
The 3âČ untranslated region (3âČ UTR) of TFRC mRNA contains five IREs, which are short conserved stem-loop structures recognized by two functionally similar iron regulatory proteins, IRP1 and IRP2
|
|
GO:0010042
response to manganese ion
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: This response-to-metal term was transferred from an ortholog. TfR1 can mediate cellular uptake of non-transferrin metals (TfR1 endocytoses Mn-loaded transferrin), but there is little direct human evidence for a dedicated manganese-response role.
Reason: Weakly-supported ortholog-transferred response term, peripheral to the receptor's core iron-uptake function; retained as non-core rather than removed because TfR1 can transport manganese-bound transferrin.
|
|
GO:0016020
membrane
|
IEA
GO_REF:0000107 |
MARK AS OVER ANNOTATED |
Summary: TfR1 is an integral membrane protein. "Membrane" is a correct but very general location that is subsumed by the more specific plasma-membrane and endosome-membrane annotations.
Reason: Uninformatively broad cellular-component term; more specific membrane locations (plasma membrane, endosome membrane, recycling endosome membrane) are annotated.
|
|
GO:0030316
osteoclast differentiation
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: Iron uptake via TfR1 has been implicated in osteoclast differentiation and bone metabolism, the basis for this ortholog-transferred term. This is a downstream, tissue-specific consequence of iron supply rather than a core receptor function.
Reason: Plausible developmental/differentiation role secondary to iron delivery, but not a defining molecular activity; retained as non-core.
|
|
GO:0030544
Hsp70 protein binding
|
IEA
GO_REF:0000107 |
REMOVE |
Summary: This molecular-function term was transferred from an ortholog. There is no robust direct human evidence that TfR1 itself binds Hsp70; HSPA8/HSC70 acts on the clathrin coat during vesicle uncoating rather than binding TfR1 directly.
Reason: Weakly-supported ortholog-transferred molecular-function annotation lacking direct human experimental evidence for a TfR1-Hsp70 interaction; risks over-annotation.
|
|
GO:0032526
response to retinoic acid
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: TFRC expression can be modulated by retinoic acid during differentiation, the basis for this ortholog-transferred response term. This is a peripheral transcriptional response, not a core receptor function.
Reason: Generic differentiation-related response term transferred from an ortholog; peripheral to the core iron-uptake function and retained as non-core.
|
|
GO:0046688
response to copper ion
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: This response-to-metal term was transferred from an ortholog. There is little direct human evidence linking TfR1 specifically to a copper-ion response distinct from general iron/metal handling.
Reason: Weakly-supported ortholog-transferred response term peripheral to the receptor's core iron-uptake function; retained as non-core.
|
|
GO:0048471
perinuclear region of cytoplasm
|
IEA
GO_REF:0000107 |
ACCEPT |
Summary: TfR1-positive recycling endosomes concentrate in the perinuclear endocytic recycling compartment, consistent with this localization. Also supported by IDA annotations.
Reason: The perinuclear endocytic recycling compartment is a canonical TfR1 localization; corroborated by IDA perinuclear annotations (PMID:16380373, PMID:20202662).
|
|
GO:0051087
protein-folding chaperone binding
|
IEA
GO_REF:0000107 |
REMOVE |
Summary: This molecular-function term was transferred from an ortholog and lacks direct human evidence that TfR1 binds protein-folding chaperones; the chaperone HSPA8 functions on the clathrin coat during uncoating rather than on TfR1 itself.
Reason: Weakly-supported ortholog-transferred term without direct human experimental support; over-annotation analogous to the Hsp70-binding entry.
|
|
GO:0055037
recycling endosome
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Following iron release in acidic endosomes, the apo-transferrin/TfR1 complex is recycled back to the plasma membrane via recycling endosomes, completing the ~10-20 minute transferrin cycle.
Reason: TfR1 is a canonical recycling-endosome marker; supported by falcon deep research describing receptor recycling to the surface.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic endosomes, and recycles apo-transferrin/TfR1 to the surface
|
|
GO:0055038
recycling endosome membrane
|
IEA
GO_REF:0000107 |
ACCEPT |
Summary: As an integral membrane protein recycled via recycling endosomes, TfR1 resides in the recycling endosome membrane during the transferrin cycle.
Reason: Consistent with the canonical TfR1 recycling pathway; complements the accepted recycling endosome annotation.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic endosomes, and recycles apo-transferrin/TfR1 to the surface
|
|
GO:0070062
extracellular exosome
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: TfR1 is a well-known marker of exosomes/extracellular vesicles, secreted during reticulocyte maturation when the receptor is shed via the multivesicular-body/exosome pathway. Detection in exosome proteomes is well documented.
Reason: Genuine but secondary localization reflecting exosomal sorting of TfR1 during reticulocyte maturation; not the core membrane-receptor function. Retained as non-core.
|
|
GO:0098794
postsynapse
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: TfR1-positive recycling endosomes are present in dendritic spines/postsynaptic compartments, where they supply membrane and traffic neurotransmitter receptors. This term derives from ortholog transfer of neuronal recycling-endosome studies.
Reason: TfR1 marks postsynaptic recycling endosomes in neurons, a tissue-specific localization secondary to its general recycling-endosome role; retained as non-core.
|
|
GO:0098944
postsynaptic recycling endosome membrane
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: TfR1 marks recycling endosomes in postsynaptic compartments of neurons. This term was transferred from an ortholog and is a specialized, neuron-specific instance of the recycling endosome membrane localization.
Reason: Tissue-specific (neuronal) recycling-endosome localization secondary to the general recycling function; retained as non-core.
|
|
GO:0098978
glutamatergic synapse
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: TfR1 localizes to glutamatergic synapses via its presence in dendritic recycling endosomes that traffic AMPA-type glutamate receptors. This SynGO-style localization was transferred from an ortholog.
Reason: Neuron-specific synaptic localization secondary to the general recycling-endosome role; retained as non-core.
|
|
GO:0099072
regulation of postsynaptic membrane neurotransmitter receptor levels
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: TfR1-positive recycling endosomes contribute to trafficking of postsynaptic neurotransmitter (e.g. AMPA) receptors, influencing their surface levels. This process term was transferred from an ortholog.
Reason: Neuron-specific process secondary to the general recycling-endosome function; not a core role of the iron receptor and retained as non-core.
|
|
GO:1990712
HFE-transferrin receptor complex
|
IEA
GO_REF:0000107 |
ACCEPT |
Summary: TfR1 forms a stable complex with the hemochromatosis protein HFE; the crystal structure shows a 2:1 TfR:HFE stoichiometry, and HFE binding lowers TfR1's affinity for transferrin, linking TfR1 to systemic iron sensing.
Reason: Well-documented protein complex supported by IDA structural and biochemical studies (also annotated by IDA from PMID:9546397, PMID:9465039, PMID:9990067).
Supporting Evidence:
PMID:9546397
TfR:HFE stoichiometry (2:1) differs from TfR:transferrin stoichiometry (2:2)
|
|
GO:0005515
protein binding
|
IPI
PMID:14691533 Mechanism for multiple ligand recognition by the human trans... |
MODIFY |
Summary: This IPI captures binding of TfR1 to its ligands (transferrin, HFE, HFE2/hemojuvelin), characterized structurally/biochemically. The bare "protein binding" term is uninformative; the specific, informative function is transferrin receptor activity.
Reason: Avoid endorsing bare protein binding; the experiment characterizes ligand recognition by the receptor, best captured by transferrin receptor activity.
Proposed replacements:
transferrin receptor activity
Supporting Evidence:
PMID:14691533
Cell surface TfR binds to circulating iron-loaded transferrin (Fe-Tf) and transports it to acidic endosomes
|
|
GO:0005515
protein binding
|
IPI
PMID:15965644 The Q283P amino-acid change in HFE leads to structural and f... |
MODIFY |
Summary: This IPI reflects the TfR1-HFE interaction studied via the HFE Q283P variant. The bare "protein binding" term is uninformative; the specific outcome is formation of the HFE-transferrin receptor complex.
Reason: Avoid endorsing bare protein binding; the documented interaction is with HFE, best captured by the HFE-transferrin receptor complex term.
Proposed replacements:
HFE-transferrin receptor complex
Supporting Evidence:
PMID:9546397
HFE binds to transferrin receptor (TfR) and reduces its affinity for iron-loaded transferrin
|
|
GO:0005515
protein binding
|
IPI
PMID:16271884 The molecular mechanism for receptor-stimulated iron release... |
MODIFY |
Summary: This IPI documents TfR1 binding to transferrin and the receptor's active role in stimulating iron release at endosomal pH. The bare "protein binding" term is uninformative; the specific function is transferrin receptor activity.
Reason: Avoid endorsing bare protein binding; the study characterizes the receptor's transferrin-binding and iron-release-promoting activity.
Proposed replacements:
transferrin receptor activity
Supporting Evidence:
PMID:16271884
Human transferrin receptor 1 (TfR) binds iron-loaded transferrin (Fe-Tf) and transports it to acidic endosomes where iron is released in a TfR-facilitated process
|
|
GO:0005515
protein binding
|
IPI
PMID:16325581 TTP specifically regulates the internalization of the transf... |
MARK AS OVER ANNOTATED |
Summary: This IPI reflects the interaction between TfR1 and the endocytic adaptor TTP/SH3BP4, which selectively regulates TfR1 internalization through TfR-containing clathrin-coated pits and vesicles. The bare "protein binding" is uninformative.
Reason: Avoid endorsing bare protein binding; the biologically informative aspect (regulated receptor internalization) is captured by the GO:0031623 receptor internalization annotation. The bare binding term itself is non-informative.
Supporting Evidence:
PMID:16325581
TTP (SH3BP4), a SH3-containing protein, specifically regulates the internalization of the transferrin receptor (TfR)
|
|
GO:0005515
protein binding
|
IPI
PMID:16354665 Release of the soluble transferrin receptor is directly regu... |
MODIFY |
Summary: This IPI reflects TfR1 binding its ligand ferritransferrin (holo-transferrin), which regulates proteolytic shedding of the soluble receptor. The bare "protein binding" term is uninformative; the specific function is transferrin receptor activity.
Reason: Avoid endorsing bare protein binding; the documented interaction is ligand binding by the receptor, best captured by transferrin receptor activity.
Proposed replacements:
transferrin receptor activity
Supporting Evidence:
PMID:16354665
sTfR release decreases with increasing ferritransferrin concentrations, whereas apo-transferrin exhibits no inhibitory effect
|
|
GO:0005515
protein binding
|
IPI
PMID:20133674 Binding and uptake of H-ferritin are mediated by human trans... |
MARK AS OVER ANNOTATED |
Summary: This IPI reflects TfR1 binding and internalizing H-chain ferritin (HFt), an additional ligand recognized by the apical domain distinct from the transferrin site. The bare "protein binding" term is uninformative; the experiment demonstrates a specific ligand-binding/uptake function.
Reason: Avoid endorsing bare protein binding; the H-ferritin uptake activity is a genuine but non-core additional ligand-binding role, and the bare binding term is uninformative.
Supporting Evidence:
PMID:20133674
we identified human transferrin receptor-1 (TfR1) as an important receptor for HFt with little or no binding to LFt
|
|
GO:0005515
protein binding
|
IPI
PMID:20404192 Noncanonical interactions between serum transferrin and tran... |
MODIFY |
Summary: This IPI documents transferrin-TfR1 interactions characterized by native mass spectrometry. The bare "protein binding" term is uninformative; the specific function is transferrin receptor activity.
Reason: Avoid endorsing bare protein binding; the interaction studied is ligand binding by the receptor, best captured by transferrin receptor activity.
Proposed replacements:
transferrin receptor activity
Supporting Evidence:
PMID:20404192
Noncanonical interactions between serum transferrin and transferrin receptor
|
|
GO:0005515
protein binding
|
IPI
PMID:20618438 N-glycosylation is important for the correct intracellular l... |
MODIFY |
Summary: This IPI reflects the functional interaction between HFE and TfR1, whereby HFE decreases cell-surface transferrin binding by TfR1. The bare "protein binding" term is uninformative; the specific complex is the HFE-transferrin receptor complex.
Reason: Avoid endorsing bare protein binding; the documented HFE-TfR1 interaction is better captured by the HFE-transferrin receptor complex term.
Proposed replacements:
HFE-transferrin receptor complex
Supporting Evidence:
PMID:20618438
its ability to decrease cell surface transferrin binding
|
|
GO:0005515
protein binding
|
IPI
PMID:21788477 How the binding of human transferrin primes the transferrin ... |
MODIFY |
Summary: This IPI documents transferrin binding to TfR1 and how it primes the receptor to potentiate iron release at endosomal pH. The bare "protein binding" term is uninformative; the specific function is transferrin receptor activity.
Reason: Avoid endorsing bare protein binding; the study characterizes ligand binding and the receptor's iron-release-promoting activity, best captured by transferrin receptor activity.
Proposed replacements:
transferrin receptor activity
Supporting Evidence:
PMID:21788477
How the binding of human transferrin primes the transferrin receptor potentiating iron release at endosomal pH
|
|
GO:0005515
protein binding
|
IPI
PMID:23384347 The transferrin receptor-1 membrane stub undergoes intramemb... |
MARK AS OVER ANNOTATED |
Summary: This IPI reflects processing of the TfR1 membrane stub (left after ectodomain shedding) by the intramembrane protease SPPL2b. The bare "protein binding" term describes TfR1 as a protease substrate rather than conferring an informative molecular function.
Reason: Avoid endorsing bare protein binding; this captures TfR1 as a substrate of SPPL2b, a peripheral processing event, and the bare binding term is uninformative.
Supporting Evidence:
PMID:23384347
The transferrin receptor-1 membrane stub undergoes intramembrane proteolysis by signal peptide peptidase-like 2b.
|
|
GO:0005515
protein binding
|
IPI
PMID:25416956 A proteome-scale map of the human interactome network. |
MARK AS OVER ANNOTATED |
Summary: This IPI derives from a high-throughput proteome-scale interactome (Y2H) screen. Such screens report binary interactions without functional context, and the bare "protein binding" term is uninformative.
Reason: High-throughput interactome hit lacking specific functional interpretation; bare protein binding is non-informative and not a core function.
Supporting Evidence:
PMID:25416956
A proteome-scale map of the human interactome network.
|
|
GO:0005515
protein binding
|
IPI
PMID:29302006 Transferrin receptor 1 is a reticulocyte-specific receptor f... |
MARK AS OVER ANNOTATED |
Summary: This IPI reflects binding of TfR1 to the Plasmodium vivax ligand PvRBP2b during reticulocyte invasion. The bare "protein binding" term is uninformative; the biologically meaningful role (host receptor for pathogen entry) is captured by the symbiont-entry/virus-receptor annotations.
Reason: Avoid endorsing bare protein binding; this host-pathogen interaction is informative only as a pathogen-entry receptor role, already annotated, and the bare binding term is non-informative.
Supporting Evidence:
PMID:29302006
Transferrin receptor 1 is a reticulocyte-specific receptor for Plasmodium vivax.
|
|
GO:0005515
protein binding
|
IPI
PMID:29950717 Cryo-EM structure of an essential Plasmodium vivax invasion ... |
MARK AS OVER ANNOTATED |
Summary: This IPI reflects the cryo-EM-resolved interaction between TfR1 and the P. vivax invasion ligand (PvRBP2b/transferrin complex). The bare "protein binding" term is uninformative; the meaningful role (pathogen-entry receptor) is annotated elsewhere.
Reason: Avoid endorsing bare protein binding; this host-pathogen structural interaction is captured by the pathogen-entry receptor annotations and the bare term is non-informative.
Supporting Evidence:
PMID:29950717
Cryo-EM structure of an essential Plasmodium vivax invasion complex.
|
|
GO:0005515
protein binding
|
IPI
PMID:32296183 A reference map of the human binary protein interactome. |
MARK AS OVER ANNOTATED |
Summary: This IPI derives from a high-throughput binary interactome (HuRI) reference map. Such screens report binary interactions without functional context, and the bare "protein binding" term is uninformative.
Reason: High-throughput interactome hit lacking specific functional interpretation; bare protein binding is non-informative and not a core function.
Supporting Evidence:
PMID:32296183
A reference map of the human binary protein interactome.
|
|
GO:0042802
identical protein binding
|
IPI
PMID:20208545 Structural basis for receptor recognition by New World hemor... |
ACCEPT |
Summary: TfR1 functions as a homodimer, and the arenavirus GP1 structural study resolved TfR1 in its dimeric form. Identical protein binding (homodimerization) is consistent with the receptor's architecture.
Reason: TfR1 is a well-characterized disulfide-linked homodimer; identical protein binding is correct and complements the protein homodimerization activity annotation.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
homodimeric transmembrane glycoprotein
|
|
GO:0042802
identical protein binding
|
IPI
PMID:23384347 The transferrin receptor-1 membrane stub undergoes intramemb... |
ACCEPT |
Summary: TfR1 is a homodimer; the SPPL2b processing study examined the dimeric receptor. Identical protein binding (homodimerization) is consistent with the receptor's architecture.
Reason: TfR1 is a well-characterized homodimer; identical protein binding is correct and complements the protein homodimerization activity annotation.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
homodimeric transmembrane glycoprotein
|
|
GO:0042802
identical protein binding
|
IPI
PMID:29302006 Transferrin receptor 1 is a reticulocyte-specific receptor f... |
ACCEPT |
Summary: TfR1 is a homodimer, engaged in its dimeric form during P. vivax reticulocyte invasion studies. Identical protein binding (homodimerization) is consistent with the receptor's architecture.
Reason: TfR1 is a well-characterized homodimer; identical protein binding is correct and complements the protein homodimerization activity annotation.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
homodimeric transmembrane glycoprotein
|
|
GO:0004998
transferrin receptor activity
|
IDA
PMID:9465039 The hemochromatosis gene product complexes with the transfer... |
ACCEPT |
Summary: Direct assay of cell-associated transferrin demonstrated TfR1's transferrin-binding (receptor) activity, modulated by HFE. This is the core molecular function.
Reason: Defining molecular function with direct experimental support; HFE overexpression measurably altered the receptor's transferrin affinity.
Supporting Evidence:
PMID:9465039
the overexpressed wild-type HFE protein decreases the affinity of the TfR for transferrin
|
|
GO:0006898
receptor-mediated endocytosis
|
IDA
PMID:9465039 The hemochromatosis gene product complexes with the transfer... |
ACCEPT |
Summary: TfR1 internalizes transferrin via receptor-mediated (clathrin-dependent) endocytosis, the basis of the iron-uptake cycle assayed here.
Reason: Core trafficking process directly supported and duplicated by the accepted IEA receptor-mediated endocytosis annotation.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic endosomes, and recycles apo-transferrin/TfR1 to the surface
|
|
GO:0007166
cell surface receptor signaling pathway
|
IDA
PMID:9465039 The hemochromatosis gene product complexes with the transfer... |
REMOVE |
Summary: PMID:9465039 characterizes the HFE-TfR complex and its effect on transferrin affinity; it does not demonstrate a classical cell-surface receptor signaling cascade. TfR1 is primarily an endocytic/transport receptor rather than a signaling receptor, although it modulates JNK and NF-kB pathways in other studies.
Reason: The cited paper does not support a canonical signaling pathway role; TfR1's documented signaling effects (JNK, NF-kB) are better captured by the specific IMP annotations. This generic term is over-annotation for this reference.
Supporting Evidence:
PMID:9465039
both the wild-type and H63D HFE proteins form stable complexes with the transferrin receptor (TfR)
|
|
GO:0033572
transferrin transport
|
IDA
PMID:9465039 The hemochromatosis gene product complexes with the transfer... |
ACCEPT |
Summary: TfR1 mediates uptake and transport of transferrin-bound iron, assayed via cell-associated transferrin in this study.
Reason: Core process of the receptor; directly supported and consistent with the transferrin endocytic recycling cycle.
Supporting Evidence:
PMID:9465039
Studies on cell-associated transferrin at 37 degrees C suggest that the overexpressed wild-type HFE protein decreases the affinity of the TfR for transferrin
|
|
GO:0004998
transferrin receptor activity
|
IDA
PMID:18353247 HFE association with transferrin receptor 2 increases cellul... |
ACCEPT |
Summary: This study assayed transferrin binding and transferrin-dependent iron uptake, supporting transferrin receptor activity. (The paper focuses on TfR2/HFE but uses diferric-transferrin binding/uptake assays.)
Reason: Core molecular function with direct functional assay of diferric-transferrin binding and uptake.
Supporting Evidence:
PMID:18353247
increased affinity for diferric transferrin, increased transferrin-dependent iron uptake
|
|
GO:0033572
transferrin transport
|
IDA
PMID:18353247 HFE association with transferrin receptor 2 increases cellul... |
ACCEPT |
Summary: Transferrin-dependent iron uptake was directly measured, supporting transferrin transport.
Reason: Core process; directly supported by transferrin-dependent iron uptake assays.
Supporting Evidence:
PMID:18353247
increased affinity for diferric transferrin, increased transferrin-dependent iron uptake
|
|
GO:0005764
lysosome
|
IDA
GO_REF:0000052 |
KEEP AS NON CORE |
Summary: A fraction of TfR1 traffics from recycling endosomes to lysosomes via a Rab12-dependent constitutive degradation pathway, and TfR1 undergoes iron-induced lysosomal degradation. Immunofluorescence localization to lysosomes is consistent with this.
Reason: Reflects the receptor's degradative trafficking branch rather than its core recycling/uptake function; retained as non-core.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-perplexity.md
Small GTPase Rab12 and its upstream activator Dennd3 regulate the trafficking of TfR1 from recycling endosomes to lysosomes, with Rab12 activation promoting TfR1 degradation
|
|
GO:0005768
endosome
|
IDA
GO_REF:0000052 |
ACCEPT |
Summary: Immunofluorescence localizes TfR1 to endosomes, the compartment where iron is released during the transferrin cycle. TfR1 is a canonical endosomal marker.
Reason: Core localization directly supported by immunofluorescence and consistent with the receptor's endosomal iron-release/recycling cycle.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
acidic endosomes (pH †5.5)
|
|
GO:0005515
protein binding
|
IPI
PMID:38625739 The secreted micropeptide C4orf48 enhances renal fibrosis vi... |
MARK AS OVER ANNOTATED |
Summary: This IPI reports an interaction between TfR1 and the secreted micropeptide C4orf48 in a renal-fibrosis context. The bare "protein binding" term is uninformative and this is a single, specialized disease-context interaction not part of TfR1's core functional repertoire.
Reason: Avoid endorsing bare protein binding; a narrow disease-context interaction with no bearing on the receptor's core function and no informative molecular-function term.
Supporting Evidence:
PMID:38625739
The secreted micropeptide C4orf48 enhances renal fibrosis via an RNA-binding mechanism.
|
|
GO:0005886
plasma membrane
|
IDA
PMID:26642240 A missense mutation in TFRC, encoding transferrin receptor 1... |
ACCEPT |
Summary: The combined-immunodeficiency study measured TfR1 at the plasma membrane (increased steady-state surface TfR1 in patient cells with the internalization-defective variant), confirming plasma-membrane localization.
Reason: Core localization directly supported; the pathogenic variant increases surface TfR1.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
Impaired TfR1 internalization (approximately fourfold lower internalization in patient T cells in the reported assays) with increased steady-state surface TfR1
|
|
GO:0004998
transferrin receptor activity
|
IDA
PMID:26642240 A missense mutation in TFRC, encoding transferrin receptor 1... |
ACCEPT |
Summary: Functional studies of the TFRC variant causing combined immunodeficiency confirmed TfR1's transferrin receptor activity and its dependence on internalization for iron delivery.
Reason: Defining molecular function supported by disease-variant functional analysis.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
Shows TfR1 is not only an iron receptor but a nonredundant immune-metabolic checkpoint
|
|
GO:0060586
multicellular organismal-level iron ion homeostasis
|
IDA
PMID:26642240 A missense mutation in TFRC, encoding transferrin receptor 1... |
ACCEPT |
Summary: Patients with the internalization-defective TFRC variant show systemic iron-handling consequences alongside immunodeficiency, supporting a role in organism-level iron homeostasis.
Reason: Supported by the human disease phenotype; complements the IEA organismal iron homeostasis annotation.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
Shows TfR1 is not only an iron receptor but a nonredundant immune-metabolic checkpoint
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-5691154 |
ACCEPT |
Summary: TfR1 is localized to the plasma membrane as a component of the Reactome transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct location for the cell-surface receptor.
Reason: Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with the receptor's primary cell-surface localization. Duplicates other accepted plasma-membrane annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-8866277 |
ACCEPT |
Summary: TfR1 is localized to the plasma membrane as a component of the Reactome transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct location for the cell-surface receptor.
Reason: Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with the receptor's primary cell-surface localization. Duplicates other accepted plasma-membrane annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-8867754 |
ACCEPT |
Summary: TfR1 is localized to the plasma membrane as a component of the Reactome transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct location for the cell-surface receptor.
Reason: Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with the receptor's primary cell-surface localization. Duplicates other accepted plasma-membrane annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-8867756 |
ACCEPT |
Summary: TfR1 is localized to the plasma membrane as a component of the Reactome transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct location for the cell-surface receptor.
Reason: Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with the receptor's primary cell-surface localization. Duplicates other accepted plasma-membrane annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-8868071 |
ACCEPT |
Summary: TfR1 is localized to the plasma membrane as a component of the Reactome transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct location for the cell-surface receptor.
Reason: Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with the receptor's primary cell-surface localization. Duplicates other accepted plasma-membrane annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-8868072 |
ACCEPT |
Summary: TfR1 is localized to the plasma membrane as a component of the Reactome transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct location for the cell-surface receptor.
Reason: Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with the receptor's primary cell-surface localization. Duplicates other accepted plasma-membrane annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-8868230 |
ACCEPT |
Summary: TfR1 is localized to the plasma membrane as a component of the Reactome transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct location for the cell-surface receptor.
Reason: Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with the receptor's primary cell-surface localization. Duplicates other accepted plasma-membrane annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-8868236 |
ACCEPT |
Summary: TfR1 is localized to the plasma membrane as a component of the Reactome transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct location for the cell-surface receptor.
Reason: Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with the receptor's primary cell-surface localization. Duplicates other accepted plasma-membrane annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-8868648 |
ACCEPT |
Summary: TfR1 is localized to the plasma membrane as a component of the Reactome transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct location for the cell-surface receptor.
Reason: Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with the receptor's primary cell-surface localization. Duplicates other accepted plasma-membrane annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-8868651 |
ACCEPT |
Summary: TfR1 is localized to the plasma membrane as a component of the Reactome transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct location for the cell-surface receptor.
Reason: Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with the receptor's primary cell-surface localization. Duplicates other accepted plasma-membrane annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-8868661 |
ACCEPT |
Summary: TfR1 is localized to the plasma membrane as a component of the Reactome transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct location for the cell-surface receptor.
Reason: Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with the receptor's primary cell-surface localization. Duplicates other accepted plasma-membrane annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-917807 |
ACCEPT |
Summary: TfR1 is localized to the plasma membrane as a component of the Reactome transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct location for the cell-surface receptor.
Reason: Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with the receptor's primary cell-surface localization. Duplicates other accepted plasma-membrane annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-917814 |
ACCEPT |
Summary: TfR1 is localized to the plasma membrane as a component of the Reactome transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct location for the cell-surface receptor.
Reason: Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with the receptor's primary cell-surface localization. Duplicates other accepted plasma-membrane annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-917839 |
ACCEPT |
Summary: TfR1 is localized to the plasma membrane as a component of the Reactome transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct location for the cell-surface receptor.
Reason: Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with the receptor's primary cell-surface localization. Duplicates other accepted plasma-membrane annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-917987 |
ACCEPT |
Summary: TfR1 is localized to the plasma membrane as a component of the Reactome transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct location for the cell-surface receptor.
Reason: Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with the receptor's primary cell-surface localization. Duplicates other accepted plasma-membrane annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0005886
plasma membrane
|
IDA
PMID:23137377 Quantitative targeted absolute proteomic analysis of transpo... |
ACCEPT |
Summary: Quantitative targeted proteomics of human brain microvascular endothelial cells detected TfR1 at the plasma membrane, consistent with its cell-surface localization (and BBB expression).
Reason: Core surface localization corroborated by quantitative membrane proteomics.
Supporting Evidence:
PMID:23137377
Quantitative targeted absolute proteomic analysis of transporters, receptors and junction proteins for validation of human cerebral microvascular endothelial cell line hCMEC/D3 as a human blood-brain barrier model.
|
|
GO:0150104
transport across blood-brain barrier
|
NAS
PMID:30280653 Blood-Brain Barrier: From Physiology to Disease and Back. |
KEEP AS NON CORE |
Summary: TfR1 is a leading receptor for transcytosis across the blood-brain barrier and is widely exploited to shuttle biologics into the CNS, supporting a role in transport across the blood-brain barrier.
Reason: A tissue-specific manifestation of receptor-mediated transcytosis rather than the core iron-uptake function; supported by falcon deep research on RMT/BBB targeting.
Supporting Evidence:
PMID:30280653
Blood-Brain Barrier: From Physiology to Disease and Back.
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is a leading target for **receptor-mediated transcytosis (RMT)** strategies to shuttle biologics across the BBB
|
|
GO:0010637
negative regulation of mitochondrial fusion
|
IMP
PMID:26214738 Regulation of mitochondrial morphology and function by stear... |
KEEP AS NON CORE |
Summary: TfR1 has a signaling moonlighting function: de-stearoylated TfR1 activates JNK, leading to HUWE1-dependent mitofusin ubiquitination and reduced mitochondrial fusion (fragmentation). Stearoylation of TfR1 inhibits this, promoting fusion. TfR1 knockdown blunts fragmentation upon C18:0 removal, supporting a role in negatively regulating mitochondrial fusion via JNK signaling.
Reason: A genuine, experimentally supported signaling (moonlighting) function distinct from and downstream of the core iron-uptake role; retained as non-core.
Supporting Evidence:
PMID:26214738
Upon loss of C18:0, TfR1 de-stearoylation activates JNK, leading to HUWE1-dependent Mfn ubiquitination
|
|
GO:0035556
intracellular signal transduction
|
IMP
PMID:26214738 Regulation of mitochondrial morphology and function by stear... |
KEEP AS NON CORE |
Summary: TfR1 acts in an intracellular signaling pathway whereby its (de)stearoylation status controls JNK activation, linking the metabolite C18:0 to mitochondrial morphology.
Reason: Supported signaling function but general and downstream of the core iron-uptake role; more specifically captured by the negative-regulation-of-mitochondrial-fusion annotation. Retained as non-core.
Supporting Evidence:
PMID:26214738
TfR1 induces mitochondrial fragmentation via JNK, and this is inhibited by TfR1 stearoylation
|
|
GO:0150104
transport across blood-brain barrier
|
NAS
PMID:26590417 Establishment and Dysfunction of the Blood-Brain Barrier. |
KEEP AS NON CORE |
Summary: TfR1 mediates receptor-mediated transcytosis across the blood-brain barrier and is widely exploited to shuttle biologics into the CNS.
Reason: A tissue-specific manifestation of receptor-mediated transcytosis rather than the core iron-uptake function; duplicates the accepted NAS BBB-transport annotation.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is a leading target for **receptor-mediated transcytosis (RMT)** strategies to shuttle biologics across the BBB
|
|
GO:0010628
positive regulation of gene expression
|
IMP
PMID:23016877 TfR1 interacts with the IKK complex and is involved in IKK-N... |
KEEP AS NON CORE |
Summary: TfR1 depletion reduces NF-kB-dependent transcription, so TfR1 positively supports expression of NF-kB target genes by enabling IKK complex formation and NF-kB nuclear translocation.
Reason: A genuine signaling/moonlighting role linking cellular iron to NF-kB-driven gene expression, distinct from and downstream of the core iron-uptake function; retained as non-core.
Supporting Evidence:
PMID:23016877
there is a reduction in the binding to target gene promoters and consequentially less target gene activation
|
|
GO:0043066
negative regulation of apoptotic process
|
IMP
PMID:23016877 TfR1 interacts with the IKK complex and is involved in IKK-N... |
KEEP AS NON CORE |
Summary: TfR1 depletion increases apoptosis in response to TNFa, an effect rescued by raising RelA/NF-kB, indicating that TfR1 supports cell survival via NF-kB signaling.
Reason: A genuine survival-signaling consequence of TfR1's NF-kB role, distinct from the core iron-uptake function; retained as non-core.
Supporting Evidence:
PMID:23016877
depletion of TfR1 results in an increase in apoptosis in response to TNFα treatment, which is rescued by elevating the levels of RelA/NF-ÎșB
|
|
GO:1900182
positive regulation of protein localization to nucleus
|
IMP
PMID:23016877 TfR1 interacts with the IKK complex and is involved in IKK-N... |
KEEP AS NON CORE |
Summary: In the absence of TfR1, NF-kB fails to translocate efficiently to the nucleus, indicating TfR1 positively regulates NF-kB nuclear localization.
Reason: A specific consequence of TfR1's IKK/NF-kB signaling role, distinct from and downstream of the core iron-uptake function; retained as non-core.
Supporting Evidence:
PMID:23016877
in the absence of TfR1, NF-ÎșB does not translocate to the nucleus efficiently
|
|
GO:0005515
protein binding
|
IPI
PMID:23016877 TfR1 interacts with the IKK complex and is involved in IKK-N... |
MODIFY |
Summary: This IPI reflects TfR1 binding the IKK complex (a protein kinase complex). The bare "protein binding" term is uninformative; the specific informative function is protein kinase binding / protein-containing complex binding.
Reason: Avoid endorsing bare protein binding; the interaction is with the IKK kinase complex, better captured by protein kinase binding.
Proposed replacements:
protein kinase binding
Supporting Evidence:
PMID:23016877
We have identified TfR1 (transferrin receptor 1), as a novel IKK-binding partner
|
|
GO:0019901
protein kinase binding
|
IPI
PMID:23016877 TfR1 interacts with the IKK complex and is involved in IKK-N... |
KEEP AS NON CORE |
Summary: TfR1 binds the IKK kinase complex and is required for IKK complex formation/activity, supporting protein kinase binding.
Reason: Experimentally supported interaction with the IKK kinases, but a moonlighting signaling function distinct from the core iron-uptake role; retained as non-core.
Supporting Evidence:
PMID:23016877
TfR1 is required for IKK complex activity, without altering IKK subunit levels
|
|
GO:0031334
positive regulation of protein-containing complex assembly
|
IMP
PMID:23016877 TfR1 interacts with the IKK complex and is involved in IKK-N... |
KEEP AS NON CORE |
Summary: TfR1 depletion reduces formation of the IKK complex, indicating TfR1 positively promotes assembly of this protein-containing complex.
Reason: A specific moonlighting signaling function (promoting IKK complex assembly), distinct from the core iron-uptake role; retained as non-core.
Supporting Evidence:
PMID:23016877
it does reduce the formation of the IKK
|
|
GO:0043123
positive regulation of canonical NF-kappaB signal transduction
|
IMP
PMID:23016877 TfR1 interacts with the IKK complex and is involved in IKK-N... |
KEEP AS NON CORE |
Summary: TfR1 is required for IKK complex activity and TNFa-induced canonical NF-kB activation; its depletion inhibits NF-kB-dependent transcription, linking cellular iron status to canonical NF-kB signaling.
Reason: A genuine, experimentally supported signaling/moonlighting function distinct from and downstream of the core iron-uptake role; retained as non-core.
Supporting Evidence:
PMID:23016877
these results indicate a new function for TfR1 in the control of IKK and NF-ÎșB
|
|
GO:0044877
protein-containing complex binding
|
IPI
PMID:23016877 TfR1 interacts with the IKK complex and is involved in IKK-N... |
KEEP AS NON CORE |
Summary: TfR1 was identified as a binding partner of the multi-subunit IKK complex, supporting protein-containing complex binding.
Reason: Experimentally supported binding to the IKK complex, a moonlighting signaling interaction distinct from the core iron-uptake role; retained as non-core.
Supporting Evidence:
PMID:23016877
We have identified TfR1 (transferrin receptor 1), as a novel IKK-binding partner
|
|
GO:0005515
protein binding
|
IPI
PMID:29388418 Transferrin Receptors TfR1 and TfR2 Bind Transferrin through... |
MODIFY |
Summary: This IPI characterizes how full-length TfR1 binds transferrin. The bare "protein binding" term is uninformative; the specific function is transferrin receptor activity.
Reason: Avoid endorsing bare protein binding; the study measures ligand (transferrin) binding by the receptor, best captured by transferrin receptor activity.
Proposed replacements:
transferrin receptor activity
Supporting Evidence:
PMID:29388418
Transferrin Receptors TfR1 and TfR2 Bind Transferrin through Differing Mechanisms
|
|
GO:0009986
cell surface
|
ISS
PMID:18619525 Subcellular localization of transporters along the rat blood... |
ACCEPT |
Summary: In vivo biotinylation localized TfR1 to the cell surface (luminal membrane) of blood-brain barrier endothelium, consistent with its established surface localization.
Reason: Cell-surface localization is the defining location of the receptor and is supported by multiple independent annotations; the ISS here adds BBB-endothelium surface evidence.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0030669
clathrin-coated endocytic vesicle membrane
|
TAS
Reactome:R-HSA-8868658 |
ACCEPT |
Summary: During clathrin-mediated internalization of the transferrin-TfR1 complex, TfR1 resides in the membrane of clathrin-coated endocytic vesicles. This Reactome (TAS) annotation captures a step of the iron-uptake cycle.
Reason: Authoritative Reactome curation of clathrin-coated vesicle trafficking; consistent with the canonical TfR1 endocytic pathway.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic endosomes, and recycles apo-transferrin/TfR1 to the surface
|
|
GO:0030669
clathrin-coated endocytic vesicle membrane
|
TAS
Reactome:R-HSA-8868659 |
ACCEPT |
Summary: During clathrin-mediated internalization of the transferrin-TfR1 complex, TfR1 resides in the membrane of clathrin-coated endocytic vesicles. This Reactome (TAS) annotation captures a step of the iron-uptake cycle.
Reason: Authoritative Reactome curation of clathrin-coated vesicle trafficking; consistent with the canonical TfR1 endocytic pathway.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic endosomes, and recycles apo-transferrin/TfR1 to the surface
|
|
GO:0030669
clathrin-coated endocytic vesicle membrane
|
TAS
Reactome:R-HSA-8868660 |
ACCEPT |
Summary: During clathrin-mediated internalization of the transferrin-TfR1 complex, TfR1 resides in the membrane of clathrin-coated endocytic vesicles. This Reactome (TAS) annotation captures a step of the iron-uptake cycle.
Reason: Authoritative Reactome curation of clathrin-coated vesicle trafficking; consistent with the canonical TfR1 endocytic pathway.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic endosomes, and recycles apo-transferrin/TfR1 to the surface
|
|
GO:0030669
clathrin-coated endocytic vesicle membrane
|
TAS
Reactome:R-HSA-8868661 |
ACCEPT |
Summary: During clathrin-mediated internalization of the transferrin-TfR1 complex, TfR1 resides in the membrane of clathrin-coated endocytic vesicles. This Reactome (TAS) annotation captures a step of the iron-uptake cycle.
Reason: Authoritative Reactome curation of clathrin-coated vesicle trafficking; consistent with the canonical TfR1 endocytic pathway.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic endosomes, and recycles apo-transferrin/TfR1 to the surface
|
|
GO:0030669
clathrin-coated endocytic vesicle membrane
|
TAS
Reactome:R-HSA-8869438 |
ACCEPT |
Summary: During clathrin-mediated internalization of the transferrin-TfR1 complex, TfR1 resides in the membrane of clathrin-coated endocytic vesicles. This Reactome (TAS) annotation captures a step of the iron-uptake cycle.
Reason: Authoritative Reactome curation of clathrin-coated vesicle trafficking; consistent with the canonical TfR1 endocytic pathway.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic endosomes, and recycles apo-transferrin/TfR1 to the surface
|
|
GO:0030669
clathrin-coated endocytic vesicle membrane
|
TAS
Reactome:R-HSA-8871193 |
ACCEPT |
Summary: During clathrin-mediated internalization of the transferrin-TfR1 complex, TfR1 resides in the membrane of clathrin-coated endocytic vesicles. This Reactome (TAS) annotation captures a step of the iron-uptake cycle.
Reason: Authoritative Reactome curation of clathrin-coated vesicle trafficking; consistent with the canonical TfR1 endocytic pathway.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic endosomes, and recycles apo-transferrin/TfR1 to the surface
|
|
GO:0030669
clathrin-coated endocytic vesicle membrane
|
TAS
Reactome:R-HSA-8871194 |
ACCEPT |
Summary: During clathrin-mediated internalization of the transferrin-TfR1 complex, TfR1 resides in the membrane of clathrin-coated endocytic vesicles. This Reactome (TAS) annotation captures a step of the iron-uptake cycle.
Reason: Authoritative Reactome curation of clathrin-coated vesicle trafficking; consistent with the canonical TfR1 endocytic pathway.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic endosomes, and recycles apo-transferrin/TfR1 to the surface
|
|
GO:0010008
endosome membrane
|
TAS
Reactome:R-HSA-917807 |
ACCEPT |
Summary: As an integral membrane protein, TfR1 is present in the endosome membrane during the transferrin cycle, where iron is released at acidic pH before receptor recycling. This Reactome (TAS) annotation captures the endosomal step.
Reason: Authoritative Reactome curation of the transferrin endosomal cycle; consistent with the receptor's endosomal trafficking.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
acidic endosomes (pH †5.5)
|
|
GO:0010008
endosome membrane
|
TAS
Reactome:R-HSA-917814 |
ACCEPT |
Summary: As an integral membrane protein, TfR1 is present in the endosome membrane during the transferrin cycle, where iron is released at acidic pH before receptor recycling. This Reactome (TAS) annotation captures the endosomal step.
Reason: Authoritative Reactome curation of the transferrin endosomal cycle; consistent with the receptor's endosomal trafficking.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
acidic endosomes (pH †5.5)
|
|
GO:0010008
endosome membrane
|
TAS
Reactome:R-HSA-917835 |
ACCEPT |
Summary: As an integral membrane protein, TfR1 is present in the endosome membrane during the transferrin cycle, where iron is released at acidic pH before receptor recycling. This Reactome (TAS) annotation captures the endosomal step.
Reason: Authoritative Reactome curation of the transferrin endosomal cycle; consistent with the receptor's endosomal trafficking.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
acidic endosomes (pH †5.5)
|
|
GO:0010008
endosome membrane
|
IDA
PMID:16380373 Sec14 homology domain targets p50RhoGAP to endosomes and pro... |
ACCEPT |
Summary: TfR1 was used as an endosomal marker and co-localized with endosomal structures in this study, consistent with its endosome-membrane localization during the transferrin cycle.
Reason: Endosome-membrane localization is a core part of the TfR1 trafficking cycle and is supported by multiple annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
acidic endosomes (pH †5.5)
|
|
GO:0048471
perinuclear region of cytoplasm
|
IDA
PMID:16380373 Sec14 homology domain targets p50RhoGAP to endosomes and pro... |
ACCEPT |
Summary: TfR1-positive recycling endosomes concentrate in the perinuclear endocytic recycling compartment, where TfR1 was localized in this study.
Reason: The perinuclear endocytic recycling compartment is a canonical TfR1 localization; supported by direct co-localization.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic endosomes, and recycles apo-transferrin/TfR1 to the surface
|
|
GO:0031410
cytoplasmic vesicle
|
IDA
PMID:15229288 Over-expression of Rififylin, a new RING finger and FYVE-lik... |
ACCEPT |
Summary: TfR1 was tracked through cytoplasmic (recycling) vesicles in studies of the endocytic recycling compartment, consistent with its presence in cytoplasmic vesicles during the transferrin cycle.
Reason: Cytoplasmic (endocytic/recycling) vesicle localization is a core part of the TfR1 trafficking cycle.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic endosomes, and recycles apo-transferrin/TfR1 to the surface
|
|
GO:0005515
protein binding
|
IPI
PMID:26642240 A missense mutation in TFRC, encoding transferrin receptor 1... |
MARK AS OVER ANNOTATED |
Summary: This IPI from the combined-immunodeficiency study reflects TfR1 interactions; the bare "protein binding" term is uninformative. The biologically meaningful findings (receptor internalization, transferrin transport, immune proliferation) are captured by dedicated process annotations from the same paper.
Reason: Avoid endorsing bare protein binding; the informative functions are annotated separately and this generic binding term adds nothing.
Supporting Evidence:
PMID:26642240
A missense mutation in TFRC, encoding transferrin receptor 1, causes combined immunodeficiency.
|
|
GO:0030890
positive regulation of B cell proliferation
|
IDA
PMID:26642240 A missense mutation in TFRC, encoding transferrin receptor 1... |
KEEP AS NON CORE |
Summary: TfR1-mediated iron uptake is required for B-cell proliferation; the internalization-defective TFRC variant impairs B-cell proliferation in patients, contributing to combined immunodeficiency.
Reason: A genuine, evidence-supported physiological consequence of the core iron-uptake function rather than a distinct molecular activity; retained as non-core.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
defective T- and B-cell proliferation, increased activation-induced apoptosis
|
|
GO:0042102
positive regulation of T cell proliferation
|
IDA
PMID:26642240 A missense mutation in TFRC, encoding transferrin receptor 1... |
KEEP AS NON CORE |
Summary: TfR1-mediated iron uptake is required to supply iron for lymphocyte proliferation and mitochondrial metabolism; loss-of-internalization variants impair T-cell proliferation, identifying TfR1 as a non-redundant immune-metabolic checkpoint.
Reason: A genuine, evidence-supported physiological consequence of the core iron-uptake function rather than a distinct molecular activity; corroborated by falcon deep research on the iron-immunity axis, but downstream of the core receptor function.
Supporting Evidence:
PMID:26642240
A missense mutation in TFRC, encoding transferrin receptor 1, causes combined immunodeficiency.
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 internalization is needed to supply iron for proliferation and mitochondrial metabolism
|
|
GO:0045830
positive regulation of isotype switching
|
IDA
PMID:26642240 A missense mutation in TFRC, encoding transferrin receptor 1... |
KEEP AS NON CORE |
Summary: Patients with the internalization-defective TFRC variant show defective immunoglobulin class-switching, a downstream immune consequence of impaired TfR1-dependent iron supply to proliferating B cells.
Reason: A downstream immune phenotype secondary to the core iron-uptake function rather than a distinct molecular activity; retained as non-core.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
defective T- and B-cell proliferation, increased activation-induced apoptosis
|
|
GO:0031623
receptor internalization
|
IDA
PMID:26642240 A missense mutation in TFRC, encoding transferrin receptor 1... |
ACCEPT |
Summary: TfR1 internalization depends on the cytoplasmic tyrosine-based YTRF motif; pathogenic variants (e.g. p.Y20H, p.R22W) cause an internalization defect with increased steady-state surface TfR1, demonstrating the receptor's role in its own internalization.
Reason: Directly supported by disease genetics (PMID:26642240) and corroborated by falcon deep research on YTRF-dependent internalization defects.
Supporting Evidence:
PMID:26642240
A missense mutation in TFRC, encoding transferrin receptor 1, causes combined immunodeficiency.
file:human/TFRC/TFRC-deep-research-falcon.md
the cytoplasmic YTRF motif explaining trafficking-sensitive pathogenic variants
|
|
GO:0033572
transferrin transport
|
IDA
PMID:26642240 A missense mutation in TFRC, encoding transferrin receptor 1... |
ACCEPT |
Summary: The internalization-defective TFRC variant impairs transferrin uptake/transport, consistent with TfR1's core transferrin transport function.
Reason: Core process directly supported by the disease-variant functional analysis.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
increase surface TfR1, impair iron uptake, and cause combined immunodeficiency
|
|
GO:0005515
protein binding
|
IPI
PMID:9990067 Association of HFE protein with transferrin receptor in cryp... |
MODIFY |
Summary: This IPI reflects the physical association of TfR1 with the HFE protein in crypt enterocytes. The bare "protein binding" term is uninformative; the specific complex is the HFE-transferrin receptor complex.
Reason: Avoid endorsing bare protein binding; the documented HFE-TfR1 association is better captured by the HFE-transferrin receptor complex term.
Proposed replacements:
HFE-transferrin receptor complex
Supporting Evidence:
PMID:9990067
the HFE protein in crypt enterocytes is physically associated with the TfR and with beta2-microglobulin
|
|
GO:0016323
basolateral plasma membrane
|
IDA
PMID:9990067 Association of HFE protein with transferrin receptor in cryp... |
KEEP AS NON CORE |
Summary: In polarized duodenal crypt enterocytes, TfR1 (with HFE) localizes to the basolateral membrane, where it takes up transferrin-bound iron from the circulation.
Reason: A polarized-epithelium-specific localization of the plasma-membrane receptor; genuine but tissue-specific, retained as non-core.
Supporting Evidence:
PMID:9990067
The crypt cell fraction exhibited dramatically higher transferrin-bound iron uptake than villus cells
|
|
GO:1990712
HFE-transferrin receptor complex
|
IDA
PMID:9990067 Association of HFE protein with transferrin receptor in cryp... |
ACCEPT |
Summary: TfR1 forms a stable physical complex with the HFE protein (and beta2-microglobulin) in duodenal crypt enterocytes, directly demonstrated by co-localization and co-precipitation.
Reason: Direct evidence for the HFE-transferrin receptor complex in a physiological tissue.
Supporting Evidence:
PMID:9990067
the HFE protein in crypt enterocytes is physically associated with the TfR and with beta2-microglobulin
|
|
GO:0005515
protein binding
|
IPI
PMID:18353247 HFE association with transferrin receptor 2 increases cellul... |
MODIFY |
Summary: This IPI relates to HFE/TfR interactions in the iron-sensing system. The bare "protein binding" term is uninformative; the relevant complex is the HFE-transferrin receptor complex.
Reason: Avoid endorsing bare protein binding; the documented interaction concerns HFE, better captured by the HFE-transferrin receptor complex term.
Proposed replacements:
HFE-transferrin receptor complex
Supporting Evidence:
PMID:18353247
HFE and TfR2 were recently discovered to form a stable complex at the cell membrane when co-expressed in heterologous cell lines
|
|
GO:0005886
plasma membrane
|
IGI
PMID:18353247 HFE association with transferrin receptor 2 increases cellul... |
ACCEPT |
Summary: Functional/genetic-interaction studies of HFE and the transferrin receptors place TfR1 at the plasma membrane where the iron-uptake complex forms.
Reason: Consistent with the receptor's defining plasma-membrane localization; duplicates other accepted plasma-membrane annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0009897
external side of plasma membrane
|
IGI
PMID:18353247 HFE association with transferrin receptor 2 increases cellul... |
ACCEPT |
Summary: The transferrin-binding ectodomain of TfR1 faces the extracellular space at the cell surface, consistent with localization to the external side of the plasma membrane.
Reason: Consistent with UniProt topology and the receptor's surface ligand-binding role; duplicates other accepted external-side annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0005515
protein binding
|
IPI
PMID:9546397 Crystal structure of the hemochromatosis protein HFE and cha... |
MODIFY |
Summary: This IPI reflects the structurally characterized TfR1-HFE interaction. The bare "protein binding" term is uninformative; the specific complex is the HFE-transferrin receptor complex.
Reason: Avoid endorsing bare protein binding; the interaction is with HFE, best captured by the HFE-transferrin receptor complex term.
Proposed replacements:
HFE-transferrin receptor complex
Supporting Evidence:
PMID:9546397
HFE binds to transferrin receptor (TfR) and reduces its affinity for iron-loaded transferrin
|
|
GO:0042803
protein homodimerization activity
|
IPI
PMID:9546397 Crystal structure of the hemochromatosis protein HFE and cha... |
ACCEPT |
Summary: TfR1 functions as a disulfide-linked homodimer of ~90 kDa subunits, so homodimerization is integral to its receptor architecture and ligand binding.
Reason: The receptor is a well-characterized homodimer; falcon deep research describes it as a homodimeric transmembrane glycoprotein.
Supporting Evidence:
PMID:9546397
Crystal structure of the hemochromatosis protein HFE and characterization of its interaction with transferrin receptor.
file:human/TFRC/TFRC-deep-research-falcon.md
homodimeric transmembrane glycoprotein
|
|
GO:1990712
HFE-transferrin receptor complex
|
IDA
PMID:9546397 Crystal structure of the hemochromatosis protein HFE and cha... |
ACCEPT |
Summary: The crystal structure and binding studies demonstrate that HFE binds TfR1 at a 2:1 (TfR:HFE) stoichiometry and that HFE, transferrin, and TfR form a ternary complex.
Reason: Definitive structural/biochemical evidence for the HFE-transferrin receptor complex.
Supporting Evidence:
PMID:9546397
TfR:HFE stoichiometry (2:1) differs from TfR:transferrin stoichiometry (2:2)
|
|
GO:0005515
protein binding
|
IPI
PMID:9465039 The hemochromatosis gene product complexes with the transfer... |
MODIFY |
Summary: This IPI reflects the TfR1-HFE interaction. The bare "protein binding" term is uninformative; the specific complex is the HFE-transferrin receptor complex.
Reason: Avoid endorsing bare protein binding; the documented interaction is with HFE, best captured by the HFE-transferrin receptor complex term.
Proposed replacements:
HFE-transferrin receptor complex
Supporting Evidence:
PMID:9465039
both the wild-type and H63D HFE proteins form stable complexes with the transferrin receptor (TfR)
|
|
GO:1990712
HFE-transferrin receptor complex
|
IDA
PMID:9465039 The hemochromatosis gene product complexes with the transfer... |
ACCEPT |
Summary: Wild-type and H63D HFE proteins form stable complexes with TfR1 in cells, directly demonstrating the HFE-transferrin receptor complex.
Reason: Direct cell-based evidence for the HFE-transferrin receptor complex.
Supporting Evidence:
PMID:9465039
both the wild-type and H63D HFE proteins form stable complexes with the transferrin receptor (TfR)
|
|
GO:1903561
extracellular vesicle
|
HDA
PMID:24769233 Proteomic analysis of cerebrospinal fluid extracellular vesi... |
KEEP AS NON CORE |
Summary: TfR1 was detected in cerebrospinal-fluid extracellular vesicles by high-throughput proteomics, consistent with its known sorting into exosomes/EVs.
Reason: Genuine but secondary localization reflecting exosomal/EV sorting of TfR1; not the core membrane-receptor function. Retained as non-core.
Supporting Evidence:
PMID:24769233
Proteomic analysis of cerebrospinal fluid extracellular vesicles: a comprehensive dataset
|
|
GO:0071466
cellular response to xenobiotic stimulus
|
IDA
PMID:16254249 Assigning functions to distinct regions of the N-terminus of... |
REMOVE |
Summary: In this study, TfR1 served as a marker of clathrin-dependent endocytosis while examining copper-stimulated internalization of the prion protein. The assignment of "cellular response to xenobiotic stimulus" to TfR1 is not supported by the paper, which concerns prion-protein endocytosis rather than a TfR1 xenobiotic response.
Reason: The cited paper uses TfR1 only as an endocytic control/marker and provides no evidence that TfR1 mediates a cellular response to a xenobiotic; this is an erroneous over-annotation.
Supporting Evidence:
PMID:16254249
its copper-stimulated, clathrin-dependent endocytosis
|
|
GO:0055037
recycling endosome
|
IDA
PMID:24561039 Rab11 endosomes contribute to mitotic spindle organization a... |
ACCEPT |
Summary: TfR1 is the canonical marker of Rab11-positive recycling endosomes and was used as such in this study, consistent with its recycling-endosome localization.
Reason: Recycling-endosome localization is core to the TfR1 transferrin cycle and is supported by multiple annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic endosomes, and recycles apo-transferrin/TfR1 to the surface
|
|
GO:0055037
recycling endosome
|
IDA
PMID:22456507 Dynamic and transient interactions of Atg9 with autophagosom... |
ACCEPT |
Summary: TfR1 was used as a recycling-endosome marker in this autophagy study, consistent with its established recycling-endosome localization.
Reason: Recycling-endosome localization is core to the TfR1 transferrin cycle; supported by multiple annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic endosomes, and recycles apo-transferrin/TfR1 to the surface
|
|
GO:0001558
regulation of cell growth
|
IMP
NOT
PMID:7556058 A novel iron uptake mechanism mediated by GPI-anchored human... |
ACCEPT |
Summary: This NOT annotation derives from a study primarily on the GPI-anchored transferrin homolog p97/melanotransferrin, using TfR-deficient CHO cells transfected with human TfR. The negated regulation-of-cell-growth annotation indicates TfR1 was not shown to regulate cell growth in this system.
Reason: A NOT annotation reflecting absence of a cell-growth-regulation role for TfR1 in this experimental context; consistent with TfR1 being an iron-uptake receptor rather than a direct growth regulator. Retained as a documented negative annotation.
Supporting Evidence:
PMID:7556058
A novel iron uptake mechanism mediated by GPI-anchored human p97
|
|
GO:0006826
iron ion transport
|
IDA
PMID:7556058 A novel iron uptake mechanism mediated by GPI-anchored human... |
ACCEPT |
Summary: In this study, transferrin-receptor-mediated iron uptake served as the canonical comparator to the novel p97/melanotransferrin pathway, consistent with TfR1's core iron-transport function.
Reason: Iron ion transport is the receptor's core process; here TfR-mediated iron uptake was directly assayed in transfected cells. Duplicates the accepted IBA iron ion transport annotation.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0009986
cell surface
|
IDA
PMID:7556058 A novel iron uptake mechanism mediated by GPI-anchored human... |
ACCEPT |
Summary: TfR was expressed at the cell surface of transfected CHO cells in this iron-uptake study, consistent with its established surface localization.
Reason: Cell-surface localization is the defining location of the receptor; duplicates other accepted cell-surface annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin
|
|
GO:0042127
regulation of cell population proliferation
|
IMP
NOT
PMID:7556058 A novel iron uptake mechanism mediated by GPI-anchored human... |
ACCEPT |
Summary: This NOT annotation derives from the p97/melanotransferrin iron-uptake study using TfR-transfected CHO cells, indicating TfR1 was not shown to regulate cell proliferation in this experimental system.
Reason: A NOT annotation documenting absence of a direct proliferation-regulation role for TfR1 in this context; consistent with TfR1 functioning as an iron-uptake receptor. Retained as a documented negative annotation.
Supporting Evidence:
PMID:7556058
A novel iron uptake mechanism mediated by GPI-anchored human p97
|
|
GO:0003723
RNA binding
|
HDA
PMID:22658674 Insights into RNA biology from an atlas of mammalian mRNA-bi... |
MARK AS OVER ANNOTATED |
Summary: TfR1 was flagged as a putative mRNA-binding protein in a proteome-wide UV-crosslinking "interactome capture" screen. TfR1 is a type II transmembrane iron-uptake receptor with no known sequence-specific RNA-binding domain, so this is most plausibly an incidental high-throughput hit.
Reason: High-throughput RBP-atlas hit lacking corroborating mechanistic evidence or an RNA-binding domain; likely a screening artifact and not a core function.
Supporting Evidence:
PMID:22658674
Insights into RNA biology from an atlas of mammalian mRNA-binding proteins
|
|
GO:0072562
blood microparticle
|
HDA
PMID:22516433 Proteomic analysis of microvesicles from plasma of healthy d... |
KEEP AS NON CORE |
Summary: TfR1 was detected by proteomics in plasma microvesicles/microparticles, consistent with its shedding into circulating vesicles (and as the soluble sTfR).
Reason: Secondary localization reflecting vesicular/soluble release of TfR1 into blood; not the core membrane-receptor function. Retained as non-core.
Supporting Evidence:
PMID:22516433
Proteomic analysis of microvesicles from plasma of healthy donors reveals high individual variability
|
|
GO:0005615
extracellular space
|
HDA
PMID:22664934 Comparison of tear protein levels in breast cancer patients ... |
KEEP AS NON CORE |
Summary: TfR1 was detected in tear-fluid proteomics, consistent with the presence of the shed soluble receptor (sTfR) in extracellular/body fluids.
Reason: Reflects the shed soluble ectodomain in extracellular fluid rather than the core membrane-receptor function; retained as non-core.
Supporting Evidence:
PMID:1871153
Characterization of transferrin receptor released by K562 erythroleukemia cells.
|
|
GO:0003725
double-stranded RNA binding
|
IDA
PMID:21266579 Raftlin is involved in the nucleocapture complex to induce p... |
MARK AS OVER ANNOTATED |
Summary: This annotation derives from a study of poly(I:C) (dsRNA mimic) uptake, where TfR1 was implicated in the "nucleocapture" complex that internalizes extracellular dsRNA for TLR3 activation. Any dsRNA association is in the context of receptor-mediated uptake rather than a sequence-specific dsRNA-binding molecular function.
Reason: TfR1 lacks a recognized dsRNA-binding domain; its reported involvement is in receptor-mediated uptake of extracellular nucleic acids, so the bare dsRNA-binding MF term over-interprets the data.
Supporting Evidence:
PMID:21266579
Raftlin is involved in the nucleocapture complex to induce poly(I:C)-mediated TLR3 activation
|
|
GO:0070062
extracellular exosome
|
HDA
PMID:20458337 MHC class II-associated proteins in B-cell exosomes and pote... |
KEEP AS NON CORE |
Summary: TfR1 was detected by proteomics in B-cell exosomes, consistent with its well-documented sorting into exosomes (a hallmark of reticulocyte maturation).
Reason: Secondary localization reflecting exosomal sorting of TfR1; not the core membrane-receptor function. Retained as non-core.
Supporting Evidence:
PMID:20458337
MHC class II-associated proteins in B-cell exosomes and potential functional implications for exosome biogenesis
|
|
GO:0005515
protein binding
|
IPI
PMID:10638746 Crystal structure of the hereditary haemochromatosis protein... |
MODIFY |
Summary: This IPI reflects the co-crystal structure of HFE complexed with TfR1. The bare "protein binding" term is uninformative; the specific complex is the HFE-transferrin receptor complex.
Reason: Avoid endorsing bare protein binding; the structurally resolved interaction is with HFE, best captured by the HFE-transferrin receptor complex term.
Proposed replacements:
HFE-transferrin receptor complex
Supporting Evidence:
PMID:10638746
Crystal structure of the hereditary haemochromatosis protein HFE complexed with transferrin receptor
|
|
GO:0048471
perinuclear region of cytoplasm
|
IDA
PMID:20202662 Ebola virus uses clathrin-mediated endocytosis as an entry p... |
ACCEPT |
Summary: TfR1 was used as a marker of the perinuclear endocytic recycling compartment in this Ebola entry study, consistent with its established perinuclear recycling-endosome localization.
Reason: The perinuclear endocytic recycling compartment is a canonical TfR1 localization; supported by multiple annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic endosomes, and recycles apo-transferrin/TfR1 to the surface
|
|
GO:0005905
clathrin-coated pit
|
IDA
PMID:12857860 Myo6 facilitates the translocation of endocytic vesicles fro... |
ACCEPT |
Summary: TfR1 was localized to clathrin-coated pits / newly uncoated endocytic vesicles in this Myo6 study, consistent with its concentration in coated pits as endocytic cargo.
Reason: Clathrin-coated-pit localization is the entry point of the TfR1 endocytic cycle; supported by multiple annotations.
Supporting Evidence:
PMID:12857860
myo6 was associated with peripherally located vesicles that contained the transferrin receptor
|
|
GO:0005768
endosome
|
IDA
PMID:14612438 Zn2+-stimulated endocytosis of the mZIP4 zinc transporter re... |
ACCEPT |
Summary: TfR1 was used as an endosomal marker in this ZIP4 endocytosis study, consistent with its endosomal localization during the transferrin cycle.
Reason: Endosomal localization is core to the TfR1 trafficking cycle; supported by multiple annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
acidic endosomes (pH †5.5)
|
|
GO:0004998
transferrin receptor activity
|
TAS
PMID:10192390 Transferrin receptor is necessary for development of erythro... |
ACCEPT |
Summary: TfR1-knockout mice die in utero with severe anemia and neurological defects, demonstrating that the receptor's transferrin-binding/iron-delivery activity is essential. The transferrin cycle is the general mechanism for cellular iron uptake.
Reason: Defining molecular function with strong in vivo genetic support; duplicates accepted transferrin receptor activity annotations.
Supporting Evidence:
PMID:10192390
Diferric Trf interacts with cell-surface Trf receptor (Trfr) to undergo receptor-mediated endocytosis into specialized endosomes
|
|
GO:0005768
endosome
|
TAS
PMID:8394993 Differential effects of antimycin A on endocytosis and exocy... |
ACCEPT |
Summary: Transferrin endocytosis traffics TfR1 through endosomal compartments, as studied here via transferrin internalization/externalization, consistent with TfR1's endosomal localization.
Reason: Endosomal localization is core to the TfR1 transferrin cycle; supported by multiple annotations.
Supporting Evidence:
file:human/TFRC/TFRC-deep-research-falcon.md
acidic endosomes (pH †5.5)
|
|
GO:0005886
plasma membrane
|
TAS
PMID:6090955 Primary structure of human transferrin receptor deduced from... |
ACCEPT |
Summary: The original cloning/primary-structure paper established TfR1 as a type II transmembrane plasma-membrane glycoprotein.
Reason: Foundational characterization of the receptor's plasma-membrane localization; duplicates other accepted plasma-membrane annotations.
Supporting Evidence:
PMID:6090955
Primary structure of human transferrin receptor deduced from the mRNA sequence
|
|
GO:0006879
intracellular iron ion homeostasis
|
TAS
PMID:10192390 Transferrin receptor is necessary for development of erythro... |
ACCEPT |
Summary: By controlling the rate of transferrin-bound iron import, TfR1 is central to cellular iron homeostasis; its loss in mice causes severe anemia, underscoring this role.
Reason: Core process supported by in vivo genetics; duplicates accepted intracellular iron homeostasis annotations.
Supporting Evidence:
PMID:10192390
Transferrin receptor is necessary for development of erythrocytes and the nervous system
|
|
GO:0004998
transferrin receptor activity
|
NAS
PMID:1871153 Characterization of transferrin receptor released by K562 er... |
ACCEPT |
Summary: This study characterized the released (soluble) transferrin receptor, attributing transferrin-binding (receptor) activity to TfR1.
Reason: Defining molecular function; duplicates accepted transferrin receptor activity annotations.
Supporting Evidence:
PMID:1871153
Characterization of transferrin receptor released by K562 erythroleukemia cells.
|
|
GO:0005576
extracellular region
|
IDA
PMID:1871153 Characterization of transferrin receptor released by K562 er... |
KEEP AS NON CORE |
Summary: A proteolytically cleaved/shed soluble form of the transferrin receptor (sTfR) circulates in the extracellular compartment and serves as a clinical biomarker of iron demand and erythropoiesis.
Reason: Reflects the shed soluble ectodomain rather than the membrane receptor's core function; supported by falcon deep research describing sTfR generation by proteolytic shedding.
Supporting Evidence:
PMID:1871153
Characterization of transferrin receptor released by K562 erythroleukemia cells.
file:human/TFRC/TFRC-deep-research-falcon.md
generated by **proteolytic cleavage/shedding** of membrane TfR; it rises in **iron deficiency** and with **expanded erythropoiesis**
|
|
GO:0006879
intracellular iron ion homeostasis
|
NAS
PMID:1871153 Characterization of transferrin receptor released by K562 er... |
ACCEPT |
Summary: The soluble transferrin receptor (sTfR) reflects cellular iron demand, linking TfR1 to intracellular iron homeostasis.
Reason: Core process; duplicates accepted intracellular iron homeostasis annotations.
Supporting Evidence:
PMID:1871153
Characterization of transferrin receptor released by K562 erythroleukemia cells.
|
|
GO:0016020
membrane
|
NAS
PMID:1871153 Characterization of transferrin receptor released by K562 er... |
MARK AS OVER ANNOTATED |
Summary: TfR1 is an integral membrane protein; "membrane" is a correct but very general location subsumed by the more specific plasma-membrane annotations.
Reason: Uninformatively broad cellular-component term; more specific membrane locations are annotated.
Supporting Evidence:
PMID:1871153
Characterization of transferrin receptor released by K562 erythroleukemia cells.
|
Q: Should TfR1's role as a receptor for H-chain ferritin (and uptake of ferritin-bound iron) be captured by a dedicated molecular-function term distinct from transferrin receptor activity?
Suggested experts: Li L, Seaman WE
Q: Are TfR1's reported signaling/moonlighting functions (JNK regulation via stearoylation; IKK-NF-kB signaling) sufficiently established to be considered part of its core annotation, or should they remain non-core?
Suggested experts: Senyilmaz D, Teleman AA, Rocha S
Experiment: Compare proliferation, isotype switching, and mitochondrial respiration in primary lymphocytes carrying the internalization-defective TFRC variant versus wild-type, with and without iron supplementation/bypass, to separate iron-supply from signaling effects.
Hypothesis: TfR1-mediated iron supply, rather than a direct signaling function, accounts for the lymphocyte-proliferation and class-switching defects in TFRC-deficiency.
Type: functional rescue and immunometabolic assay
Experiment: Use stearoylation-deficient TfR1 mutants (and ZDHHC6 manipulation) in cells with iron uptake held constant to test whether JNK activation and mitochondrial fragmentation can be uncoupled from transferrin-iron import.
Hypothesis: TfR1 stearoylation status controls mitochondrial morphology via JNK independently of its iron-uptake activity.
Type: structure-function and live-cell imaging assay
The research report should be a detailed narrative explaining the function, biological processes, and localization of the gene product. Citations should be given for all claims.
You should prioritize authoritative reviews and primary scientific literature when conducting research. You can supplement
this with annotations you find in gene/protein databases, but these can be outdated or inaccurate.
We are specifically interested in the primary function of the gene - for enzymes, what reaction is catalyzed, and what is the substrate specificity? For transporters, what is the substrate? For structural proteins or adapters, what is the broader structural role? For signaling molecules, what is the role in the pathway.
We are interested in where in or outside the cell the gene product carries out its function.
We are also interested in the signaling or biochemical pathways in which the gene functions. We are less interested in broad pleiotropic effects, except where these elucidate the precise role.
Include evidence where possible. We are interested in both experimental evidence as well as inference from structure, evolution, or bioinformatic analysis. Precise studies should be prioritized over high-throughput, where available.
The UniProt accession P02786 corresponds to the human TFRC gene product, transferrin receptor protein 1, widely referred to as TfR1 and the cell-surface marker CD71. A 2024 review on receptor-mediated transcytosis explicitly lists âTfR, CD71, TFRCâ together, confirming the symbol-to-protein mapping in the relevant physiological context (bloodâbrain barrier transport). (haqqani2024receptormediatedtranscytosisfor pages 2-3)
TfR1 is the major cell-surface receptor that mediates cellular iron import by binding diferric transferrin (holoâTf) and internalizing the ligandâreceptor complex. A 2024 review describes TfR1 as a homodimeric transmembrane glycoprotein formed by disulfide-linked ~90 kDa subunits and emphasizes that TfR1 preferentially binds diferric transferrin to form a complex that is internalized. (li2024pathophysiologicalaspectsof pages 5-6)
The core trafficking cycle proceeds through clathrin-mediated endocytosis at the plasma membrane, acidic endosomes that trigger iron release, and recycling of the receptorâapotransferrin complex back to the cell surface.
* In a 2024 review, the FeâTfâTfR1 complex is described as internalized via clathrin-mediated endocytosis, followed by iron release in acidic endosomes (pH †5.5), then receptor recycling; the overall cycle is described as completing in approximately 10â20 minutes. (li2024pathophysiologicalaspectsof pages 5-6)
* A 2024 BBB transcytosis review states that receptor-mediated endocytosis at the BBB predominantly occurs via clathrin-mediated endocytosis and identifies TFRC/TfR (CD71) as a key receptor in this class. (haqqani2024receptormediatedtranscytosisfor pages 2-3)
A critical mechanistic concept is the tyrosine-based internalization motif âYTRFâ in the cytoplasmic tail. In a 2024 human genetics/immunology study, TfR1-mediated iron uptake is described as receptor-mediated endocytosis regulated via the YTRF motif; variants affecting this region cause defective internalization. (aba2024anovelhomozygous pages 1-2, aba2024anovelhomozygous pages 4-5)
The soluble transferrin receptor (sTfR) refers to a circulating form of the transferrin receptor generated by proteolytic cleavage/shedding of membrane TfR; it rises in iron deficiency and with expanded erythropoiesis because more receptor is expressed and shed. A recent synthesis notes that sTfR is clinically usefulâoften together with ferritin-based indicesâyet cutoffs are not standardized across assays and populations. (polizzi2026recentadvancesin pages 10-11)
A 2024 Journal of Clinical Immunology report identifies a new homozygous TFRC variant (c.64C>T; p.R22W) causing combined immunodeficiency (CID) and shows it produces an internalization defect similar to the previously known p.Y20H founder variant. Key mechanistic findings include:
* Impaired TfR1 internalization (approximately fourfold lower internalization in patient T cells in the reported assays) with increased steady-state surface TfR1. (aba2024anovelhomozygous pages 4-5)
* Downstream immune consequences: impaired T-cell activation (failure to upregulate CD25/ICOS), defective T- and B-cell proliferation, increased activation-induced apoptosis, restricted clonal diversity, and metabolic defects including impaired mitochondrial oxidative phosphorylation in activated helper T cells. (aba2024anovelhomozygous pages 9-12, aba2024anovelhomozygous pages 4-5)
* Clinical phenotype in the described case includes recurrent infections (e.g., sinopulmonary), bronchiectasis, chronic cytopenias (neutropenia, thrombocytopenia), microcytic anemia, hypogammaglobulinemia, and reduced NK/Treg/MAIT populations. (aba2024anovelhomozygous pages 4-5)
This line of evidence strengthens the view that TFRC is not only an iron import receptor but also a non-redundant immune-metabolic checkpoint during lymphocyte activation and expansion. (aba2024anovelhomozygous pages 9-12, aba2024anovelhomozygous pages 1-2)
Multiple 2024 studies place TFRC at the intersection of iron uptake and ferroptosis (iron-dependent lipid peroxidation-driven cell death), with distinct upstream regulatory mechanisms:
(a) Aging liver ischemia/reperfusion injury (Nature Communications, Jun 2024)
* Older livers display increased oxidative stress/lipid peroxidation and increased ACSL4 and TFRC after reperfusion.
* The m6A demethylase FTO is downregulated in older livers; TFRC and ACSL4 are presented as FTO targets, with FTO overexpression mitigating injury by reducing ferroptosis via m6A-dependent regulation of mRNA stability.
* A translational angle is proposed where nicotinamide mononucleotide increases FTO activity and suppresses ferroptosis. (li2024ftodeficiencyin pages 1-2, li2024ftodeficiencyin pages 2-4)
(b) Sorafenib resistance in hepatocellular carcinoma (J Exp Clin Cancer Res, Aug 2024)
* A CCT3/ACTN4/TFRC axis is described in which CCT3 interacts with ACTN4 to impair TFRC recycling back to the plasma membrane, thereby reducing iron endocytosis and protecting cells from ferroptosis.
* CCT3 knockdown sensitizes HCC cells to sorafenib and increases sorafenib-induced ferroptosis; effects are supported by in vivo xenograft experiments. (zhu2024cct3actn4tfrcaxisprotects pages 1-2)
(c) Breast cancer adriamycin resistance (FASEB Journal, Aug 2024)
* HIF1α is shown by dual-luciferase assay to act upstream of TFRC, and increasing HIF1α increases TFRC and ferroptosis-associated markers (Fe2+, MDA).
* Ferroptosis dependence is supported by rescue with ferroptosis inhibitor Ferâ1 in the cellular model, linking TFRC-driven iron accumulation to therapy response. (yu2024hypoxiaâinduciblefactorâ1αcan pages 1-2)
Collectively, these studies update TFRCâs functional annotation from âiron receptorâ to a conditionally actionable control point for iron-dependent cell death programs in both injury and cancer contexts. (li2024ftodeficiencyin pages 1-2, zhu2024cct3actn4tfrcaxisprotects pages 1-2, yu2024hypoxiaâinduciblefactorâ1αcan pages 1-2)
TfR1 is a leading target for receptor-mediated transcytosis (RMT) strategies to shuttle biologics across the BBB.
* A 2024 review explains the RMT concept and includes TFRC/TfR among the best-studied BBB receptors; it also emphasizes that such receptors commonly internalize through clathrin-mediated endocytosis and then traffic through intracellular compartments before release on the abluminal side. (haqqani2024receptormediatedtranscytosisfor pages 2-3)
* A TfR1-focused review (2025, included here for engineering detail) highlights key design constraints for TfR1 shuttles: favoring monovalent and moderate-affinity binding, pH-dependent dissociation in early endosomes, and avoiding multivalent clustering that drives lysosomal capture; it also notes evaluation platforms such as human iPSC-derived BBB models and microvessel systems. (shen2025targetingtransferrinreceptor pages 6-8)
A 2024 review on transferrin-based delivery catalogs multiple Tf/TfR1-targeted platforms used experimentally for tumor delivery, including Tfâdrug conjugates, Tf-modified nanoparticles, liposomes, microemulsions, and toxin conjugates, leveraging the rapid TfR1 trafficking cycle (~10â20 min) to enhance uptake. (li2024pathophysiologicalaspectsof pages 8-9, li2024pathophysiologicalaspectsof pages 6-8, li2024pathophysiologicalaspectsof pages 5-6)
A 2024 experimental nanomaterial study demonstrates an implementation conceptually aligned with TFRC biology: transferrin-derived carbon dots selectively bind CD71 on HL60 leukemia cells and trigger clathrin-dependent endocytosis, positioning such particles as candidates for imaging/biosensing and targeted uptake applications. (strickland2024cancercelltargeting pages 1-2)
Authoritative BBB delivery analyses emphasize that merely binding TfR1 is insufficient; effective delivery depends on controlling intracellular trafficking fate (recycling/transcytosis vs lysosomal degradation). The design principles described (monovalency, moderate affinity, pH-sensitive dissociation, epitope selection, ligand density) reflect expert consensus in the RMT field and are intended to mitigate well-recognized issues like endosomal/lysosomal trapping and limited productive transcytosis. (shen2025targetingtransferrinreceptor pages 6-8)
The 2024 CID genetics report provides mechanistic evidence supporting an expert interpretation: TFRC function is not interchangeable in activated lymphocytes because TfR1 internalization is needed to supply iron for proliferation and mitochondrial metabolism; partial rescue by exogenous iron sources reinforces the causal iron-dependence. (aba2024anovelhomozygous pages 9-12, aba2024anovelhomozygous pages 4-5)
A 2023 prospective observational cohort analysis in chronic heart failure (HF) (final analyzed cohort n=215, selected for normal hemoglobin and normal systemic iron markers) used sTfR to define âtissue iron deficiencyâ (because standardized cutoffs are lacking).
* The authors define tissue iron deficiency as sTfR > 75th percentile = 1.63 mg/L; sTfR tertiles were <1.11, 1.11â1.45, and â„1.46 mg/L, with ~26% meeting the >75th percentile definition. (rasjimenez2023solubletransferrinreceptor pages 3-5, rasjimenez2023solubletransferrinreceptor media 424abe75)
* Patients meeting the tissue iron deficiency definition had markedly worse functional capacity: 6-minute walk test (6MWT) distance 206 ± 179 m vs 314 ± 155 m (p < 0.0001). (rasjimenez2023solubletransferrinreceptor pages 1-2, rasjimenez2023solubletransferrinreceptor media 424abe75)
* Quality of life was worse: Minnesota Living with HF Questionnaire overall summary score 51 ± 27 vs 39 ± 20 (p = 0.006). (rasjimenez2023solubletransferrinreceptor pages 1-2)
* Regression results: log sTfR standardized ÎČ = â0.135 (p = 0.010) in multivariable models for 6MWT distance; tissue ID (sTfR > 1.63 mg/L) multivariable standardized ÎČ = â0.176 (p = 0.001). Odds ratios for impaired exercise capacity included OR 2.8 (1.44â5.43) for tissue ID (p = 0.002). (rasjimenez2023solubletransferrinreceptor pages 5-7)
These data illustrate a real-world deployment of TFRC biology via its soluble ectodomain biomarker and underscore the practical issue that sTfR thresholds are often cohort- and assay-specific. (rasjimenez2023solubletransferrinreceptor pages 2-3, rasjimenez2023solubletransferrinreceptor pages 3-5)
| Topic | Key recent finding | Evidence type/model | Practical implication | Primary citations (pqac IDs) |
|---|---|---|---|---|
| TFRC/TfR1 core function and trafficking | Human TFRC encodes TfR1/CD71, a homodimeric type II transmembrane receptor that binds diferric transferrin, internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic endosomes, and recycles apo-transferrin/TfR1 to the surface; the cytoplasmic YTRF motif is critical for internalization. | Mechanistic reviews and human disease-focused primary study; receptor biology and trafficking synthesis. | Establishes the primary molecular function for functional annotation: transferrin-dependent cellular iron import coupled to rapid endocytic recycling, with the YTRF motif explaining trafficking-sensitive pathogenic variants and engineering opportunities. | (aba2024anovelhomozygous pages 1-2, li2024pathophysiologicalaspectsof pages 5-6, shen2025targetingtransferrinreceptor pages 4-5, haqqani2024receptormediatedtranscytosisfor pages 2-3) |
| 2024 immune deficiency findings | A new homozygous TFRC p.R22W variant, alongside known p.Y20H, disrupts the YTRF-region internalization machinery, increases surface TfR1, impairs receptor shuttling/iron uptake, and causes combined immunodeficiency with defective T/B-cell activation, restricted clonal diversity, hypogammaglobulinemia, cytopenias, recurrent infections, and reduced NK/Treg/MAIT cells; some proliferative defects were partially rescued by exogenous iron. | 2024 human genetics and immunology study in patient cells, engineered HEK293T constructs, flow cytometry, Seahorse metabolic assays, transcriptomics. | Shows TfR1 is not only an iron receptor but a nonredundant immune-metabolic checkpoint; supports TFRC inclusion in inborn error of immunity workups and motivates iron-uptake rescue or HSCT-based management strategies. | (aba2024anovelhomozygous pages 9-12, aba2024anovelhomozygous pages 2-4, aba2024anovelhomozygous pages 1-2, aba2024anovelhomozygous pages 4-5) |
| 2024 ferroptosis-related regulatory axes | Multiple 2024 studies place TFRC as a positive ferroptosis node: reduced FTO increases m6A-dependent stability of Tfrc/Acsl4 transcripts in aged liver I/R injury; CCT3-ACTN4 limits TFRC recycling to the plasma membrane and thereby suppresses iron endocytosis/ferroptosis in sorafenib-resistant HCC; HIF1A transcriptionally upregulates TFRC in breast cancer, increasing Fe2+ and lipid peroxidation and restoring Adriamycin sensitivity. | 2024 primary mechanistic studies using mouse liver I/R models, primary hepatocytes, HCC cell lines/xenografts, breast cancer clinical samples/cell models, dual-luciferase assays, ferroptosis rescue assays. | Identifies TFRC trafficking/expression as a therapeutically actionable lever for ferroptosis modulation in cancer and ischemia-reperfusion injury, including overcoming drug resistance. | (li2024ftodeficiencyin pages 1-2, zhu2024cct3actn4tfrcaxisprotects pages 1-2, yu2024hypoxiaâinduciblefactorâ1αcan pages 1-2, li2024ftodeficiencyin pages 2-4) |
| Applications: BBB targeting, cancer delivery, sTfR biomarker | TfR1 remains a major receptor-mediated transcytosis target at the BBB; successful design principles emphasize monovalent/moderate-affinity binding, pH-dependent dissociation, recycling-biased epitopes, and controlled ligand density to avoid lysosomal trapping. Cancer implementations include transferrin- or anti-TfR1-based nanoparticles, liposomes, micelles, toxin conjugates, and protein-derived carbon dots. Soluble TfR (sTfR) serves as a clinical marker of tissue iron demand/erythropoiesis; in a 2023 HF cohort, a pragmatic cutoff of >1.63 mg/L identified patients with worse 6MWT and quality-of-life outcomes. | 2024 delivery reviews, 2024 nanoparticle/cell-targeting study, 2023 prospective human heart-failure cohort with regression analyses and figure/table support. | Guides translational use of TFRC in brain drug delivery and tumor targeting, while highlighting biomarker utility of sTfR and the lack of universally standardized cutoffs. | (li2024pathophysiologicalaspectsof pages 8-9, li2024pathophysiologicalaspectsof pages 9-10, strickland2024cancercelltargeting pages 1-2, shen2025targetingtransferrinreceptor pages 6-8, rasjimenez2023solubletransferrinreceptor pages 1-2, rasjimenez2023solubletransferrinreceptor pages 5-7, rasjimenez2023solubletransferrinreceptor media 424abe75) |
Table: This table condenses the most important TFRC/TfR1 findings for functional annotation, recent mechanistic advances, and translational relevance. It is useful as a quick-reference summary linking core biology to 2024 immune and ferroptosis studies and current application areas.
References
(haqqani2024receptormediatedtranscytosisfor pages 2-3): Arsalan S. Haqqani, Kasandra Bélanger, and Danica B. Stanimirovic. Receptor-mediated transcytosis for brain delivery of therapeutics: receptor classes and criteria. Frontiers in Drug Delivery, Mar 2024. URL: https://doi.org/10.3389/fddev.2024.1360302, doi:10.3389/fddev.2024.1360302. This article has 123 citations.
(li2024pathophysiologicalaspectsof pages 5-6): Chang Li, Liya Zhou, and Xunzhe Yin. Pathophysiological aspects of transferrin-a potential nano-based drug delivery signaling molecule in therapeutic target for varied diseases. Frontiers in Pharmacology, Mar 2024. URL: https://doi.org/10.3389/fphar.2024.1342181, doi:10.3389/fphar.2024.1342181. This article has 33 citations.
(aba2024anovelhomozygous pages 1-2): Ămran Aba, İbrahim Cemal Maslak, Canberk İpĆir, Damla Pehlivan, Nicholas I. Warnock, Damon J. Tumes, Gökhan Cildir, and Baran Erman. A novel homozygous germline mutation in transferrin receptor 1 (tfr1) leads to combined immunodeficiency and provides new insights into iron-immunity axis. Journal of Clinical Immunology, Jan 2024. URL: https://doi.org/10.1007/s10875-024-01658-0, doi:10.1007/s10875-024-01658-0. This article has 16 citations and is from a domain leading peer-reviewed journal.
(aba2024anovelhomozygous pages 4-5): Ămran Aba, İbrahim Cemal Maslak, Canberk İpĆir, Damla Pehlivan, Nicholas I. Warnock, Damon J. Tumes, Gökhan Cildir, and Baran Erman. A novel homozygous germline mutation in transferrin receptor 1 (tfr1) leads to combined immunodeficiency and provides new insights into iron-immunity axis. Journal of Clinical Immunology, Jan 2024. URL: https://doi.org/10.1007/s10875-024-01658-0, doi:10.1007/s10875-024-01658-0. This article has 16 citations and is from a domain leading peer-reviewed journal.
(polizzi2026recentadvancesin pages 10-11): Alessandro Polizzi. Recent advances in research on iron metabolism, ferritin, and hepcidin. International Journal of Molecular Sciences, 27(2):906, Jan 2026. URL: https://doi.org/10.3390/ijms27020906, doi:10.3390/ijms27020906. This article has 2 citations.
(aba2024anovelhomozygous pages 9-12): Ămran Aba, İbrahim Cemal Maslak, Canberk İpĆir, Damla Pehlivan, Nicholas I. Warnock, Damon J. Tumes, Gökhan Cildir, and Baran Erman. A novel homozygous germline mutation in transferrin receptor 1 (tfr1) leads to combined immunodeficiency and provides new insights into iron-immunity axis. Journal of Clinical Immunology, Jan 2024. URL: https://doi.org/10.1007/s10875-024-01658-0, doi:10.1007/s10875-024-01658-0. This article has 16 citations and is from a domain leading peer-reviewed journal.
(li2024ftodeficiencyin pages 1-2): Rong Li, Xijing Yan, Cuicui Xiao, Tingting Wang, Xuejiao Li, Zhongying Hu, Jinliang Liang, Jiebin Zhang, Jianye Cai, Xin Sui, Qiuli Liu, Manli Wu, Jiaqi Xiao, Haitian Chen, Yasong Liu, Chenhao Jiang, Guoshi Lv, Gui-huo Chen, Yingcai Zhang, Jia Yao, Jun Zheng, and Yang Yang. Fto deficiency in older livers exacerbates ferroptosis during ischaemia/reperfusion injury by upregulating acsl4 and tfrc. Nature Communications, Jun 2024. URL: https://doi.org/10.1038/s41467-024-49202-3, doi:10.1038/s41467-024-49202-3. This article has 84 citations and is from a highest quality peer-reviewed journal.
(li2024ftodeficiencyin pages 2-4): Rong Li, Xijing Yan, Cuicui Xiao, Tingting Wang, Xuejiao Li, Zhongying Hu, Jinliang Liang, Jiebin Zhang, Jianye Cai, Xin Sui, Qiuli Liu, Manli Wu, Jiaqi Xiao, Haitian Chen, Yasong Liu, Chenhao Jiang, Guoshi Lv, Gui-huo Chen, Yingcai Zhang, Jia Yao, Jun Zheng, and Yang Yang. Fto deficiency in older livers exacerbates ferroptosis during ischaemia/reperfusion injury by upregulating acsl4 and tfrc. Nature Communications, Jun 2024. URL: https://doi.org/10.1038/s41467-024-49202-3, doi:10.1038/s41467-024-49202-3. This article has 84 citations and is from a highest quality peer-reviewed journal.
(zhu2024cct3actn4tfrcaxisprotects pages 1-2): Huihui Zhu, Qiuhong Liu, Qinna Meng, Lingjian Zhang, Siwei Ju, Jiaheng Lang, Danhua Zhu, Yongxia Chen, Nadire Aishan, Xiaoxi Ouyang, Sainan Zhang, Lidan Jin, Lanlan Xiao, Linbo Wang, Lanjuan Li, and Feiyang Ji. Cct3/actn4/tfrc axis protects hepatocellular carcinoma cells from ferroptosis by inhibiting iron endocytosis. Journal of Experimental & Clinical Cancer Research : CR, Aug 2024. URL: https://doi.org/10.1186/s13046-024-03169-7, doi:10.1186/s13046-024-03169-7. This article has 29 citations.
(yu2024hypoxiaâinduciblefactorâ1αcan pages 1-2): Xiaojie Yu, Qingqun Guo, Haojie Zhang, Xiaohong Wang, Yong Han, and Zhenlin Yang. Hypoxiaâinducible factorâ1α can reverse the adriamycin resistance of breast cancer adjuvant chemotherapy by upregulating transferrin receptor and activating ferroptosis. The FASEB Journal, Aug 2024. URL: https://doi.org/10.1096/fj.202401119r, doi:10.1096/fj.202401119r. This article has 18 citations.
(shen2025targetingtransferrinreceptor pages 6-8): Xinai Shen, Huan Li, Beiyu Zhang, Yunan Li, and Zheying Zhu. Targeting transferrin receptor 1 for enhancing drug delivery through the bloodâbrain barrier for alzheimerâs disease. International Journal of Molecular Sciences, 26:9793, Oct 2025. URL: https://doi.org/10.3390/ijms26199793, doi:10.3390/ijms26199793. This article has 18 citations.
(li2024pathophysiologicalaspectsof pages 8-9): Chang Li, Liya Zhou, and Xunzhe Yin. Pathophysiological aspects of transferrin-a potential nano-based drug delivery signaling molecule in therapeutic target for varied diseases. Frontiers in Pharmacology, Mar 2024. URL: https://doi.org/10.3389/fphar.2024.1342181, doi:10.3389/fphar.2024.1342181. This article has 33 citations.
(li2024pathophysiologicalaspectsof pages 6-8): Chang Li, Liya Zhou, and Xunzhe Yin. Pathophysiological aspects of transferrin-a potential nano-based drug delivery signaling molecule in therapeutic target for varied diseases. Frontiers in Pharmacology, Mar 2024. URL: https://doi.org/10.3389/fphar.2024.1342181, doi:10.3389/fphar.2024.1342181. This article has 33 citations.
(strickland2024cancercelltargeting pages 1-2): Sara Strickland, Mychele Jorns, Luke Fourroux, Lindsey Heyd, and Dimitri Pappas. Cancer cell targeting via selective transferrin receptor labeling using protein-derived carbon dots. ACS Omega, 9:2707-2718, Jan 2024. URL: https://doi.org/10.1021/acsomega.3c07744, doi:10.1021/acsomega.3c07744. This article has 23 citations and is from a peer-reviewed journal.
(rasjimenez2023solubletransferrinreceptor pages 3-5): Maria del Mar Ras-JimĂ©nez, RaĂșl Ramos-Polo, Josep Francesch Manzano, Miriam Corbella Santano, Herminio Morillas Climent, NĂșria Jose-BazĂĄn, Santiago JimĂ©nez-Marrero, Paloma Garcimartin Cerezo, Sergi Yun Viladomat, Pedro Moliner Borja, Blanca Torres CardĂșs, JosĂ© Maria VerdĂș-Rotellar, Carles Diez-LĂłpez, JosĂ© GonzĂĄlez-Costello, Elena GarcĂa-Romero, Fernando de Frutos Seminario, Laura Triguero-Llonch, Cristina Enjuanes Grau, Marta Tajes Orduña, and Josep Comin-Colet. Soluble transferrin receptor as iron deficiency biomarker: impact on exercise capacity in heart failure patients. Journal of Personalized Medicine, 13:1282, Aug 2023. URL: https://doi.org/10.3390/jpm13081282, doi:10.3390/jpm13081282. This article has 7 citations.
(rasjimenez2023solubletransferrinreceptor media 424abe75): Maria del Mar Ras-JimĂ©nez, RaĂșl Ramos-Polo, Josep Francesch Manzano, Miriam Corbella Santano, Herminio Morillas Climent, NĂșria Jose-BazĂĄn, Santiago JimĂ©nez-Marrero, Paloma Garcimartin Cerezo, Sergi Yun Viladomat, Pedro Moliner Borja, Blanca Torres CardĂșs, JosĂ© Maria VerdĂș-Rotellar, Carles Diez-LĂłpez, JosĂ© GonzĂĄlez-Costello, Elena GarcĂa-Romero, Fernando de Frutos Seminario, Laura Triguero-Llonch, Cristina Enjuanes Grau, Marta Tajes Orduña, and Josep Comin-Colet. Soluble transferrin receptor as iron deficiency biomarker: impact on exercise capacity in heart failure patients. Journal of Personalized Medicine, 13:1282, Aug 2023. URL: https://doi.org/10.3390/jpm13081282, doi:10.3390/jpm13081282. This article has 7 citations.
(rasjimenez2023solubletransferrinreceptor pages 1-2): Maria del Mar Ras-JimĂ©nez, RaĂșl Ramos-Polo, Josep Francesch Manzano, Miriam Corbella Santano, Herminio Morillas Climent, NĂșria Jose-BazĂĄn, Santiago JimĂ©nez-Marrero, Paloma Garcimartin Cerezo, Sergi Yun Viladomat, Pedro Moliner Borja, Blanca Torres CardĂșs, JosĂ© Maria VerdĂș-Rotellar, Carles Diez-LĂłpez, JosĂ© GonzĂĄlez-Costello, Elena GarcĂa-Romero, Fernando de Frutos Seminario, Laura Triguero-Llonch, Cristina Enjuanes Grau, Marta Tajes Orduña, and Josep Comin-Colet. Soluble transferrin receptor as iron deficiency biomarker: impact on exercise capacity in heart failure patients. Journal of Personalized Medicine, 13:1282, Aug 2023. URL: https://doi.org/10.3390/jpm13081282, doi:10.3390/jpm13081282. This article has 7 citations.
(rasjimenez2023solubletransferrinreceptor pages 5-7): Maria del Mar Ras-JimĂ©nez, RaĂșl Ramos-Polo, Josep Francesch Manzano, Miriam Corbella Santano, Herminio Morillas Climent, NĂșria Jose-BazĂĄn, Santiago JimĂ©nez-Marrero, Paloma Garcimartin Cerezo, Sergi Yun Viladomat, Pedro Moliner Borja, Blanca Torres CardĂșs, JosĂ© Maria VerdĂș-Rotellar, Carles Diez-LĂłpez, JosĂ© GonzĂĄlez-Costello, Elena GarcĂa-Romero, Fernando de Frutos Seminario, Laura Triguero-Llonch, Cristina Enjuanes Grau, Marta Tajes Orduña, and Josep Comin-Colet. Soluble transferrin receptor as iron deficiency biomarker: impact on exercise capacity in heart failure patients. Journal of Personalized Medicine, 13:1282, Aug 2023. URL: https://doi.org/10.3390/jpm13081282, doi:10.3390/jpm13081282. This article has 7 citations.
(rasjimenez2023solubletransferrinreceptor pages 2-3): Maria del Mar Ras-JimĂ©nez, RaĂșl Ramos-Polo, Josep Francesch Manzano, Miriam Corbella Santano, Herminio Morillas Climent, NĂșria Jose-BazĂĄn, Santiago JimĂ©nez-Marrero, Paloma Garcimartin Cerezo, Sergi Yun Viladomat, Pedro Moliner Borja, Blanca Torres CardĂșs, JosĂ© Maria VerdĂș-Rotellar, Carles Diez-LĂłpez, JosĂ© GonzĂĄlez-Costello, Elena GarcĂa-Romero, Fernando de Frutos Seminario, Laura Triguero-Llonch, Cristina Enjuanes Grau, Marta Tajes Orduña, and Josep Comin-Colet. Soluble transferrin receptor as iron deficiency biomarker: impact on exercise capacity in heart failure patients. Journal of Personalized Medicine, 13:1282, Aug 2023. URL: https://doi.org/10.3390/jpm13081282, doi:10.3390/jpm13081282. This article has 7 citations.
(shen2025targetingtransferrinreceptor pages 4-5): Xinai Shen, Huan Li, Beiyu Zhang, Yunan Li, and Zheying Zhu. Targeting transferrin receptor 1 for enhancing drug delivery through the bloodâbrain barrier for alzheimerâs disease. International Journal of Molecular Sciences, 26:9793, Oct 2025. URL: https://doi.org/10.3390/ijms26199793, doi:10.3390/ijms26199793. This article has 18 citations.
(aba2024anovelhomozygous pages 2-4): Ămran Aba, İbrahim Cemal Maslak, Canberk İpĆir, Damla Pehlivan, Nicholas I. Warnock, Damon J. Tumes, Gökhan Cildir, and Baran Erman. A novel homozygous germline mutation in transferrin receptor 1 (tfr1) leads to combined immunodeficiency and provides new insights into iron-immunity axis. Journal of Clinical Immunology, Jan 2024. URL: https://doi.org/10.1007/s10875-024-01658-0, doi:10.1007/s10875-024-01658-0. This article has 16 citations and is from a domain leading peer-reviewed journal.
(li2024pathophysiologicalaspectsof pages 9-10): Chang Li, Liya Zhou, and Xunzhe Yin. Pathophysiological aspects of transferrin-a potential nano-based drug delivery signaling molecule in therapeutic target for varied diseases. Frontiers in Pharmacology, Mar 2024. URL: https://doi.org/10.3389/fphar.2024.1342181, doi:10.3389/fphar.2024.1342181. This article has 33 citations.
(bu2024ironmetabolismand pages 4-5): Xiaorui Bu and Lufang Wang. Iron metabolism and the tumor microenvironment: a new perspective on cancer intervention and therapy (review). International Journal of Molecular Medicine, Dec 2024. URL: https://doi.org/10.3892/ijmm.2024.5480, doi:10.3892/ijmm.2024.5480. This article has 38 citations and is from a peer-reviewed journal.
Transferrin receptor protein 1 (TfR1), also designated as cluster of differentiation 71 (CD71), represents one of the most extensively characterized iron transport proteins in humans, encoded by the TFRC gene located on chromosome 3[1][3]. As a cell surface glycoprotein expressed on virtually all nucleated cells, TfR1 functions as the primary gateway for cellular iron acquisition through receptor-mediated endocytosis of iron-bound transferrin molecules[10][32]. The protein's significance extends well beyond basic iron homeostasis, encompassing critical roles in erythropoiesis, proliferation of rapidly dividing cells, and emerging therapeutic applications in cancer treatment and drug delivery to the brain. Understanding TfR1's molecular mechanisms, regulatory pathways, and biological contexts illuminates fundamental principles of cellular nutrient acquisition and reveals potential vulnerabilities that cancer cells exploit to support their elevated metabolic demands. This comprehensive report synthesizes current knowledge regarding TfR1's structure, function, intracellular trafficking, regulation, and clinical relevance, providing a detailed mechanistic foundation for understanding how this receptor orchestrates iron import and influences cellular physiology across diverse biological contexts.
TfR1 is a transmembrane glycoprotein composed fundamentally of two disulfide-linked monomers, each approximately 90 kilodaltons in size, creating a functional homodimer at the cell surface[1][2][27]. The protein architecture comprises a single transmembrane domain with an extracellular ectodomain containing the iron and transferrin binding regions, a membrane-proximal region, and a relatively short cytoplasmic tail of approximately 67 amino acids[1][47]. The two polypeptide chains are covalently linked by disulfide bonds at residues 89 and 98, positioned immediately extracellular to the transmembrane domain, which provides structural stability to the dimeric complex[15]. Notably, crystallographic studies have revealed that the disulfide-linked dimeric structure, while providing stability, is not absolutely essential for the protein's functional activity, as non-covalently linked dimers retain substantial iron transport capacity[27].
The three-dimensional structure of the TfR1 ectodomain reveals three distinct functional domains arranged within each monomeric subunit[49][52]. One domain exhibits striking structural similarity to carboxypeptidases and aminopeptidases, belonging to the M28 family of zinc-dependent proteases, though TfR1 itself is catalytically inactive as a peptidase[43][49]. This protease-like domain participates critically in both transferrin binding and in stabilizing the conformational changes necessary for iron release from transferrin within acidic endosomal compartments[49][60]. The remaining domains include an apical domain and a helical domain, each contributing essential interactions with ligand molecules and mediating conformational changes during the iron transport cycle[60]. The structural organization positions these domains to facilitate binding of iron-laden transferrin at physiological pH on the cell surface while simultaneously preparing the receptor for the conformational rearrangements triggered by endosomal acidification[49][52].
TfR1 undergoes multiple post-translational modifications that influence its localization, stability, and functional activity. Each monomeric chain is extensively glycosylated, with N-linked carbohydrate moieties contributing to protein stability, trafficking, and potentially immune recognition[1][2]. Additionally, the protein is palmitoylated at the inner membrane surface, a lipid modification occurring on intracellular cysteine residues that enhances membrane association and may influence lateral mobility within the plasma membrane[1][26]. The cytoplasmic domain contains a unique phosphorylation site at serine residue 24, though surprisingly, phosphorylation at this site does not appear critical for the protein's endocytic function or basolateral sorting in polarized cells[58]. This observation suggests that while phosphorylation occurs in response to kinase activity, it may not constitute an essential regulatory mechanism for basal iron transport function, though it might modulate responses to specific cellular signals or growth factors.
The primary physiological function of TfR1 involves binding iron-loaded transferrin (holo-transferrin) at the cell surface and mediating its entry into cells through clathrin-dependent endocytosis[2][7][10]. Iron in plasma exists in a highly restricted form, primarily bound to transferrin, an 85-kilodalton transport protein carrying up to two ferric iron (FeÂłâș) atoms in two distinct binding sites designated the C-terminal lobe and N-terminal lobe[2][15]. TfR1 exhibits striking selectivity for diferric transferrin over iron-free apotransferrin at neutral pH, creating a mechanism that ensures cells preferentially import iron-loaded molecules while generally excluding iron-depleted transferrin from cellular uptake[15][57]. The C-lobe and N-lobe of transferrin each interact with distinct regions of the TfR1 ectodomain, with the C-lobe engaging the helical domain of the receptor while the N-lobe contacts the stalk region[57].
Upon holo-transferrin binding, the transferrin-TfR1 complex undergoes rapid clustering within specialized plasma membrane invaginations called coated pits, which are lined with the clathrin scaffolding protein[1][7]. The formation of these coated pits requires multiple machinery components, including the clathrin complex itself, adaptor proteins, and dynamin, a GTPase essential for membrane scission[7]. Within these coated structures, phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)Pâ) plays a critical regulatory role, as inactivation of this phospholipid directly reduces transferrin internalization and increases surface levels of TfR1, demonstrating the importance of lipid composition in regulating this entry pathway[7]. The internalized transferrin-receptor complex is transported in clathrin-coated vesicles that rapidly lose their clathrin coats and fuse with early endosomal compartments within minutes of internalization[7][9].
Once internalized into early endosomes, a critical pH-dependent conformational change occurs that dramatically alters the transferrin-TfR1 interaction and enables iron release[5][15][57]. The early endosomal compartment maintains a pH of approximately 5.0-6.0, maintained by vacuolar ATPase proton pumps, which creates an acidic microenvironment promoting protonation of histidine residues within both transferrin and the receptor[2][5]. This acidification triggers dramatic conformational changes in the transferrin molecule, particularly affecting the iron binding sites and the interaction interfaces between transferrin and its receptor[57][60]. Specifically, protonation of His349 in the C-terminal lobe at acidic pH converts a hydrophobic interaction with Phe760 of the TfR into a stronger cation-Ï interaction or salt bridge with Asp757, causing a conformational change that destabilizes the iron binding cleft in the C-lobe[60]. Simultaneously, the N-lobe undergoes movement of its PRKP loop that disrupts the N2 subdomain's interaction with the receptor, allowing the iron binding cleft to open and release the iron atom[60].
Critically, the transferrin receptor itself undergoes ligand-dependent conformational changes that actively promote iron release from transferrin at acidic pH[5][60]. The binding of iron-loaded transferrin causes rotation at the TfR1 dimer interface, bringing four critical histidine residues (His475 in each protease-like domain and His684 in each helical domain) into proximity[60]. These conformational changes at the dimer interface prime the receptor to undergo additional pH-induced movements when exposed to endosomal acidification, directly facilitating the conformational changes in transferrin that enable iron dissociation[60]. This active role of the receptor in stimulating iron release represents a sophisticated mechanism ensuring efficient iron delivery into the cell[5]. Additionally, within endosomes, the ferric iron (FeÂłâș) released from transferrin is rapidly reduced to ferrous iron (FeÂČâș) by metalloproteases, notably STEAP3, a process essential for subsequent iron export from the endosome[2].
Once iron is released from transferrin within acidic endosomes, the ferrous iron (FeÂČâș) must be transported across the endosomal membrane into the cytoplasm through the action of divalent metal transporter 1 (DMT1, also called SLC11A2)[2][14]. DMT1 functions as a proton-coupled iron transporter, with the acidic endosomal environment providing the proton gradient necessary to drive iron uptake across the endosomal membrane[2][14]. Once in the cytoplasm, iron faces three potential metabolic fates depending on cellular needs[2]. Iron may be immediately incorporated into ferritin, a 24-subunit iron storage protein that safely sequesters iron in mineral form as ferrihydrite, protecting against the generation of reactive oxygen species through Fenton chemistry[2][14]. Alternatively, iron may be transported to mitochondria for incorporation into heme groups and iron-sulfur clusters, essential cofactors in the electron transport chain and numerous metabolic enzymes[2][40]. Finally, iron may be exported back into the extracellular environment through ferroportin (SLC40A1), the only known cellular iron exporter, allowing iron redistribution to other tissues[2][14].
The export of iron through ferroportin is tightly regulated by hepcidin, a circulating peptide hormone produced by hepatocytes that binds ferroportin and triggers its ubiquitin-mediated degradation, thereby preventing iron export and causing cellular iron retention[14]. This systemic hormone represents the critical control point for whole-body iron homeostasis, linking iron sensing in the liver to the regulation of iron absorption in the intestine and iron recycling in macrophages[14]. Understanding this regulatory axis proves essential for comprehending both normal iron metabolism and iron overload disorders.
The internalization of transferrin receptor and its ligand occurs through well-characterized clathrin-mediated endocytosis, involving recruitment of the receptor into coated pits through interactions with adaptor protein complexes[7][49]. The AP2 adaptor complex, comprising four subunits (α, ÎČ, ÎŒ, and Ï), binds directly to a critical YXRF internalization motif (where Y is tyrosine, X is any amino acid, R is arginine, and F is phenylalanine) located within the cytoplasmic tail of TfR1[58]. This motif appears to form a tight turn structure that is specifically recognized by adaptor proteins, ensuring efficient clustering of the receptor into coated pits[58]. Once internalized into clathrin-coated vesicles, the vesicles rapidly lose their clathrin coat through the action of uncoating proteins, exposing the underlying transport vesicle to fusion machinery[7].
The early endosomal compartment represents a highly dynamic sorting station where cargo molecules are distributed to distinct cellular destinations based on their biochemical properties[7][9]. Early endosomes exist in two functionally distinct populationsâdynamic early endosomes that mature through transitional stages, and static early endosomes that remain relatively stable[7]. The sorting of transferrin at the cell surface appears to begin immediately upon binding and receptor clustering, with early segregation occurring through TIRF (Total Internal Reflection Fluorescence) microscopy-visualized mechanisms within 100-200 nanometers of the plasma membrane[7]. This pre-endosomal sorting suggests that the cell possesses mechanisms for distinguishing cargo molecules even before their entry into membrane-enclosed compartments, potentially through preferential inclusion in distinct lipid microdomains or through interactions with specific sorting proteins[7].
Following iron release in early endosomes, both the transferrin receptor and iron-depleted transferrin (apotransferrin) must be recycled back to the cell surface to complete the iron transport cycle and to allow transferrin molecules to acquire new iron in the bloodstream[7][9]. This recycling process is mediated through recycling endosomes, specialized compartments enriched in the Rab11 GTPase, which functions as a crucial regulator of membrane trafficking from recycling endosomes back to the plasma membrane[7][59]. Real-time fluorescence microscopy studies have revealed that transferrin moves into tubular formations in both static and dynamic early endosomes before separating, with these vesicles then delivering transferrin to either the perinuclear recycling compartment or directly back to the plasma membrane[7]. The perinuclear recycling compartment, marked by Rab11 localization, represents a major hub for receptor sorting and redistribution[7][59].
Multiple small GTPases of the Rab family regulate distinct steps of the transferrin recycling pathway, with Rab4, localized primarily in early endosomes, mediating rapid recycling of some transferrin receptor molecules directly from early endosomes to the plasma membrane[7]. Overexpression of Rab4 causes accumulation of transferrin in tubular structures and vesicles directed toward the recycling compartment, suggesting that Rab4 modulates the velocity and efficiency of recycling[7]. The GEF Grab (guanine nucleotide exchange factor for Rab8) has emerged as another critical regulator of transferrin receptor recycling specifically in erythroid cells, with GRAB knockdown reducing transferrin-bound iron uptake and causing hypochromic-microcytic anemia in mouse models[37]. The exocyst, a multiprotein complex involved in tethering recycling vesicles to the plasma membrane, appears to be recruited by active Rab8 in a Grab-dependent manner, providing a molecular link between Rab GTPase activation and vesicle fusion[37].
While TfR1 is predominantly recycled back to the plasma membrane to maintain high iron import capacity, constitutive degradation of the receptor also occurs through a specialized Rab12-dependent pathway[59]. Small GTPase Rab12 and its upstream activator Dennd3 regulate the trafficking of TfR1 from recycling endosomes to lysosomes, with Rab12 activation promoting TfR1 degradation[59]. This constitutive degradation pathway appears distinct from conventional endocytic degradation through late endosomes and multivesicular bodies, instead operating through direct trafficking from recycling endosomes to lysosomes[59]. The physiological significance of this basal degradation pathway remains unclear but may provide a mechanism for modulating TfR1 levels independent of iron-responsive transcriptional regulation[59].
Additionally, under conditions of iron excess, TfR1 undergoes iron-induced selective degradation through lysosomal pathways, providing a mechanism to reduce iron uptake capacity when intracellular iron levels become elevated[59]. This iron-regulated degradation complements the transcriptional downregulation of TfR1 mediated through iron-responsive elements, creating multiple levels of control over iron import capacity[59]. Importantly, recent studies employing cryo-electron microscopy have revealed structural details of how the transferrin receptor interacts with its ligands in the endosomal environment, showing that the apical domain of TfR1 mediates binding to heavy-chain ferritin through a distinct set of epitopes compared to those used for transferrin binding, allowing differential regulation of iron acquisition from these two sources[22].
The cellular abundance of transferrin receptor is tightly regulated by iron status through a sophisticated post-transcriptional mechanism involving iron-responsive elements (IREs) and iron regulatory proteins (IRPs)[31][34]. The 3âČ untranslated region (3âČ UTR) of TFRC mRNA contains five IREs, which are short conserved stem-loop structures recognized by two functionally similar iron regulatory proteins, IRP1 and IRP2[31][34]. Under conditions of low intracellular iron, these IRPs bind avidly to the TFRC IREs, stabilizing the mRNA and preventing its degradation[31][34]. The protective effect of IRP binding appears mediated through blocking access of endonucleases to the unstable regions within the 3âČ UTR, as mutagenesis studies have identified multiple non-IRE stem-loops contributing minimally to mRNA instability but enhancing instability when IRP protection is lost[31].
When intracellular iron levels rise, IRP1 undergoes an iron-sulfur cluster (Fe-S) assembly that converts it into an aconitase-like conformation unsuitable for IRE binding, causing its release from the TFRC mRNA and allowing the mRNA to be rapidly degraded[34]. IRP2, by contrast, is ubiquitinated and proteasomally degraded under iron-replete conditions[34]. This iron-sensing mechanism achieves remarkable specificity through direct iron binding to the IRE itself, which induces conformational changes favoring eIF4F (eukaryotic Initiation Factor 4F) binding over IRP binding, creating a conformational switch that responds to iron status[14][34]. The regulatory response appears graded rather than switch-like, with progressive loss of IRP protection occurring as iron levels increase, allowing cells to fine-tune TfR1 expression in response to cellular iron demands[31].
Beyond the iron-responsive post-transcriptional regulation, TfR1 expression is modulated by multiple transcriptional and signaling pathways responding to cellular growth, differentiation signals, and metabolic states[1][2]. Growth factors including insulin and insulin-like growth factors upregulate TfR1 expression, reflecting increased iron demands of proliferating cells[2]. Erythropoietin (EPO), a key regulator of red blood cell production, strongly induces TfR1 expression in erythroid progenitors, enabling the massive iron uptake necessary for hemoglobin synthesis during erythropoiesis[40]. The transcriptional upregulation of TFRC during erythroid differentiation occurs through multiple pathways, including the GATA1 transcription factor crucial for erythroid-specific gene expression, demonstrating integration of iron metabolism control with the physiological demands of hematopoiesis[40].
Interestingly, TFRC expression is also regulated through alternative splicing mechanisms responsive to iron status and cellular context, with evidence suggesting that the transferrin receptor itself possesses RNA-binding protein properties influencing splicing patterns of genes involved in iron metabolism, DNA repair, and translation[36]. This newly appreciated function of TfR1 as an RNA-binding protein adds an additional layer of complexity to iron metabolism regulation, suggesting that TfR1 may coordinate iron uptake with cellular processes dependent on iron availability at the transcriptional level[36].
A critical interaction occurs between TfR1 and HFE (hemochromatosis protein), the protein mutated in hereditary hemochromatosis type 1[20][23]. HFE interacts with TfR1 through the α1 and α2 domains of HFE and functions as a regulatory cofactor that modulates the iron-sensing properties of the transferrin receptor system[20][23]. The HFE-TfR1 complex appears to interact with TfR2 (transferrin receptor 2), creating a supramolecular complex involved in iron sensing and signaling to regulate hepcidin expression, the master hormone controlling systemic iron homeostasis[20]. The TfR2/HFE complex detects iron-loaded transferrin and triggers activation of BMP-SMAD signaling pathways that enhance hepcidin transcription in hepatocytes[20]. Specifically, the iron-bound transferrin-TfR2-HFE complex mediates conformational changes that activate downstream signaling, ensuring that increased iron availability triggers increased hepcidin production to limit further iron absorption[20].
Importantly, disruption of the HFE-TfR1 interaction alone does not impair hepcidin regulation, suggesting that HFE sequestration from TfR1 allows its interaction with TfR2, which appears to be the critical complex for hepcidin regulation[20]. This model proposes that TfR1 competes with TfR2 for HFE binding under low holo-transferrin conditions, but when iron-loaded transferrin concentrations increase, the holo-transferrin-TfR2-HFE complex forms and activates hepcidin transcription[20]. Evidence supporting this model includes observations that in TfR1 mutant mice lacking functional TfR1, higher levels of hepcidin mRNA accumulate, consistent with increased availability of HFE to bind TfR2[20]. This elegant regulatory mechanism demonstrates how TfR1's role extends beyond simple iron uptake to encompass systemic iron homeostasis through protein-protein interactions controlling hormonal signaling[20].
Beyond transferrin, TfR1 binds heavy-chain ferritin (H-Ft), providing an alternative source of bioavailable iron for cells[19][22]. Ferritin, a spherical 24-subunit iron storage protein composed of heavy-chain (FHC) and light-chain (FLC) subunits, circulates in plasma at low concentrations and can be internalized by cells expressing TfR1[19][22]. The binding of ferritin to TfR1 occurs through distinct epitopes compared to those used for transferrin binding, with structural studies revealing that specific residues in the ferritin BC-loop (particularly Y211 and N-terminal residues of the A helix including Q14, D15, and R22) are critical for receptor recognition[22]. Notably, ferritin composed entirely of light chains does not bind TfR1, indicating that heavy-chain subunits provide the essential binding determinants[19][22]. Upon binding and internalization through TfR1-mediated endocytosis, ferritin enters both endosomal and lysosomal compartments where acidification and proteolysis release stored iron[19].
The functional significance of ferritin-TfR1 interaction becomes particularly apparent in erythroid precursors, where ferritin uptake via TfR1 can provide sufficient iron for hemoglobin synthesis in the absence of transferrin, demonstrating functional redundancy in iron acquisition pathways[19]. This dual-receptor function suggests that ferritin and transferrin may serve complementary roles in coordinating iron processing and utilization, potentially allowing cells to respond flexibly to varying iron bioavailability in different physiological contexts[19][22]. The shared use of TfR1 for both transferrin and ferritin uptake raises interesting questions about how endosomal iron metabolism differs between these two pathways and whether ferritin-derived iron might supply specific pools of iron within the cell[19].
TfR1 exhibits a remarkably broad tissue distribution, reflecting the fundamental importance of iron for virtually all nucleated cells[13][16]. Expression is particularly abundant in tissues with high metabolic rates or rapid cell proliferation, including bone marrow, placenta, and rapidly proliferating epithelial tissues[13][16]. Within normal bone marrow, TfR1 is expressed predominantly on erythroid precursor cells of all maturation stages, with expression being essentially absent from mature erythrocytes[1][2][40]. This developmental pattern of expression makes physiological sense, as mature red blood cells have lost their nuclei and cannot synthesize new hemoglobin, eliminating their requirement for iron import[40]. In contrast, erythroid precursor cells express extremely high levels of TfR1 to satisfy the enormous iron demands of hemoglobin synthesis, with approximately 80% of total cellular iron utilization occurring in erythroid precursors for hemoglobin production, and consequently, approximately 80% of total TfR1 is expressed on erythroid cells[15][40].
Beyond erythropoiesis, TfR1 is expressed on hepatocytes, Kupffer cells (tissue macrophages of the liver), endocrine pancreas cells, basal epidermis, testicular tissue, and pituitary cells in normal tissues[13]. This distribution reflects the iron requirements of different cell types for essential enzymatic functions and metabolic processes[13]. The restricted pattern of expression in normal tissues contrasts sharply with its widespread upregulation in malignant neoplasms, where rapidly dividing cancer cells dramatically increase TfR1 expression to meet escalated iron demands for ribonucleotide reductase and other iron-dependent biosynthetic enzymes required for DNA synthesis and cell proliferation[13][39].
Erythropoiesis represents the physiological context in which TfR1 achieves its highest expression levels and most critical functional importance[40]. During differentiation of erythroid progenitors stimulated by erythropoietin (EPO), cells progressively increase TfR1 surface levels, enabling them to import the massive quantities of iron required for hemoglobin synthesis[40]. The process of hemoglobin production demands approximately 30 million iron atoms per second in an adult human, highlighting the extraordinary iron-handling capacity that must be maintained by the erythroid compartment[40]. Recent discoveries have identified Grab, a guanine nucleotide exchange factor for Rab8, as a critical erythroid-specific regulator of TfR1 recycling to the plasma membrane[37]. Polymorphisms in GRAB and RAB8 genes associate with variations in mean corpuscular hemoglobinization of red blood cells, indicating that genetic variation in recycling machinery influences iron delivery efficiency and ultimately hemoglobin accumulation[37].
The Grab-Rab8 axis appears to function by recruiting the exocyst to recycling endosomes in an iron-demand-responsive manner, controlling the rate at which TfR1 is returned to the plasma membrane to import additional iron[37]. In Grab-deficient cells, TfR1 fails to recycle efficiently, accumulating in intracellular compartments and eventually being diverted to lysosomes for degradation, resulting in decreased cellular iron uptake and reduced hemoglobin synthesis[37]. These findings suggest that erythroid-specific recycling machinery provides a regulatory point for modulating iron uptake capacity in response to the differentiation stage and hemoglobin synthesis requirements of developing red blood cells[37].
The blood-brain barrier (BBB) presents a formidable obstacle to drug delivery to the central nervous system, restricting passage of most large molecules and permitting only small, lipophilic compounds to cross the endothelial monolayer forming this barrier[24]. However, TfR1 is highly expressed on brain endothelial cells of the BBB, where it mediates transcytosis of transferrin-bound iron from systemic circulation into brain parenchyma, delivering this essential nutrient across an otherwise impermeable barrier[24]. Antibodies targeting TfR1, particularly anti-TfR1 monoclonal antibodies, have been engineered to exploit this physiological transcytotic pathway for drug delivery, with the antibodies being internalized at the luminal surface of brain endothelial cells and transcytosed to the abluminal surface, delivering attached therapeutic cargo to brain tissues[21][24].
The efficiency of transcytosis appears critically dependent on the binding affinity of anti-TfR1 antibodies to their epitope[21]. Paradoxically, high-affinity antibodies demonstrate reduced transcytosis efficiency, with antibodies showing affinities of 76 nanoMolar and 108 nanoMolar transporting more efficiently across the BBB than high-affinity 5 nanoMolar variants[21]. The mechanistic explanation for this counterintuitive finding involves antibody sorting and trafficking within endosomal compartmentsâhigh-affinity bivalent antibodies are preferentially directed toward late endosomes and lysosomes for degradation, whereas lower-affinity variants are preferentially sorted toward early endosomes, from which they can be efficiently recycled and exocytosed on the abluminal surface[21]. This sorting mechanism appears linked to alterations in endocytic recycling pathways triggered by different avidity states of antibody-receptor interactions, with monovalent antibodies showing particular efficiency in promoting transcytosis by favoring early endosomal sorting tubules[21].
TfR1 is dramatically overexpressed on the surfaces of malignant cells from multiple cancer types, including breast cancer, gliomas, ovarian cancer, lung cancer, hepatocellular carcinoma, and colon cancer, establishing it as a universal cancer biomarker[39][42]. Cancer cells upregulate TfR1 expression to meet escalated iron demands driven by rapid proliferation requiring DNA synthesis, the rate-limiting step of which depends on ribonucleotide reductase (RNR)âan iron-dependent enzyme synthesizing nucleotide precursors[39][42]. Iron serves as an essential cofactor for the R1 subunit of ribonucleotide reductase, which forms a critical tyrosyl radical on Tyr122 required for catalytic activity[39]. Additionally, iron-dependent proteins including electron transport chain components become increasingly critical in cancer cells supporting altered metabolic states, making iron availability a potential therapeutic vulnerability[42].
Studies demonstrating blocking of anti-TfR1 monoclonal antibodies inhibit cancer cell proliferation through iron deprivation represent proof-of-concept for TfR1-targeted therapeutic approaches[42]. Notably, anti-TfR1 antibodies inhibit growth of erythroleukemia and B-cell lymphoma cell lines with IC50 values as low as 0.1 micrograms per milliliter, with in vivo studies showing tumor regression in xenograft models through mechanisms involving both iron deprivation and antibody-dependent cellular cytotoxic effector functions[51]. Importantly, anti-TfR1 treatment additionally upregulates hypoxia-inducible factor-1 alpha (HIF-1α) through reduced iron availability for prolyl hydroxylase activity, potentially increasing tumor angiogenesis, suggesting that optimal therapeutic strategies might combine anti-TfR1 antibodies with agents targeting hypoxia pathways[42].
Recent evidence indicates that TfR1 expression correlates with poor overall survival in osteosarcoma patients, with TFRC knockdown in osteosarcoma cell lines significantly reducing proliferation, migration, and invasion abilities[39]. The mechanism involves decreased total intracellular iron content following TFRC knockdown, leading to reduced ribonucleotide reductase 2 (RRM2) expression and activity[39]. Remarkably, the reduction in osteosarcoma cell proliferation caused by TFRC knockdown can be reversed by supplementing cells with ferric ammonium citrate (FAC) or by overexpressing RRM2, directly demonstrating that TFRC-mediated iron uptake drives RRM2-dependent DNA synthesis supporting cancer cell proliferation[39].
Multiple viral pathogens have evolved to exploit TfR1 as a cellular entry receptor, exploiting the abundance of this protein on target cells and its constitutive endocytic trafficking to acidic compartments favorable for viral membrane fusion[50][53]. New World arenaviruses causing hemorrhagic fevers in humansâincluding Machupo, Guanarito, Junin, and Sabia virusesâutilize human TfR1 as their cellular receptor, with the viral entry glycoprotein (GP) binding directly and specifically to TfR1[53]. Expression of human TfR1 in hamster cell lines markedly enhances infection by pseudoviruses displaying New World arenavirus GPs, whereas cells lacking TfR1 show minimal infection[53]. Conversely, Old World arenaviruses such as Lassa virus do not utilize TfR1 but instead use α-dystroglycan as a cellular receptor, demonstrating specific viral adaptation to particular receptor systems[53].
The structural basis for TfR1-viral GP interaction involves specific epitopes on TfR1 that are recognized by viral glycoproteins with high affinity comparable to transferrin binding[53]. Critically, anti-TfR1 monoclonal antibodies efficiently inhibit replication of Machupo, Guanarito, Junin, and Sabia viruses but not Lassa virus, demonstrating the functional requirement for TfR1 in New World arenavirus infection[53]. Remarkably, iron status influences viral infection efficiency, with iron depletion enhancing infection of Junin and Machupo pseudoviruses but not affecting Lassa virus, suggesting that iron-dependent conformational changes of TfR1 may enhance viral GP binding[53]. This viral dependence on TfR1 reflects both the abundance of this receptor on target cells and the evolutionary optimization of viral entry mechanisms to exploit constitutive endocytic pathways that deliver viral particles to appropriate intracellular compartments for membrane fusion[50][53].
Emerging research reveals that TfR1-mediated iron uptake plays unexpected roles in immune cell dysfunction and autoimmune diseases. In systemic lupus erythematosus (SLE), a prototypic autoimmune disease characterized by dysfunctional T cells, recent CRISPR screening identified TfR1 (CD71) as a critical factor specifically critical for T helper 17 cell (TH17) differentiation and inhibitory for induced regulatory T cells (iTregs)[54]. SLE-prone T cells display enhanced CD71 expression resulting from altered endosomal recycling, leading to increased intracellular iron accumulation[54]. This elevated iron uptake impairs mitochondrial function and mTORC1 signaling, skewing T cell differentiation toward pro-inflammatory TH17 and away from immunosuppressive iTregs[54]. Remarkably, anti-CD71 treatment reduces intracellular iron, inhibits TH17 differentiation, promotes IL-10 production by CD4 T cells, and reverses disease manifestations in SLE-prone mice[54]. Disease severity in SLE patients correlates directly with CD71 expression on TH17 cells, highlighting the pathogenic role of iron metabolism dysregulation in autoimmune dysfunction[54].
TfR1 undergoes proteolytic cleavage at an Arg-Leu bond distal to the second disulfide bond linking the two monomers, releasing the soluble form of transferrin receptor (sTfR), a truncated protein lacking the transmembrane domain and consisting of 660 amino acids comprising the ectodomain[15][18]. This soluble form circulates in plasma at concentrations proportional to total cellular TfR1 abundance, making sTfR a valuable biomarker for iron metabolism status[15][18]. Approximately 80% of metabolic iron is incorporated into hemoglobin by erythroid precursors, and since most cellular TfR1 resides on erythroid cells, circulating sTfR concentration reflects erythroid precursor mass and erythropoiesis rate[15][40].
Circulating sTfR is particularly clinically useful for distinguishing iron deficiency from other causes of anemia or elevated ferritin levels[18]. Unlike ferritin, which functions as an acute-phase reactant elevated during inflammation, infection, malignancy, and chronic disease without indicating iron deficiency, sTfR is not influenced by inflammatory states[18]. Patients with iron deficiency show elevated sTfR levels as their erythroid precursor cells upregulate TfR1 to maximize iron capture from limited iron availability[18]. In contrast, patients with hypoplastic anemias (reduced erythropoiesis due to bone marrow failure) show low sTfR levels despite potentially low iron, allowing discrimination between iron deficiency and bone marrow failure[18]. Additionally, sTfR has been employed as a marker for erythropoietin (EPO) misuse by athletes, as EPO administration increases erythropoiesis and consequently sTfR levels, providing a physiological indicator of illicit EPO injection[4].
CD71 (TfR1) serves as a robust immunohistochemical marker for several tissue types and disease processes. In particular, CD71 is highly expressed on chorionic villous trophoblasts of the placenta, with CD71 immunostaining particularly useful for identifying villous structures in necrotic or autolytic specimens where other morphologic features become obscured[1][13]. Among hematopoietic cells, CD71 is expressed specifically by erythroid precursors within the normal bone marrow and spleen, with this restricted expression pattern allowing discrimination of erythroid lineage cells from other hematopoietic populations[1][2]. In combination with markers specific to more mature erythrocytes such as glycophorin A (recognized by the TER-119 antibody in mice), flow cytometry analysis can track erythroid differentiation and assess changes in erythropoiesis during disease or treatment[2]. The CD71-positive population in bone marrow encompasses early erythroid precursors (proerythroblasts and early normoblasts) that actively synthesize hemoglobin, providing a specific identification of erythropoietic activity[2].
The prominent role of TfR1 in iron-dependent proliferation of cancer cells and its use by pathogenic viruses has spurred substantial drug development efforts targeting this receptor. Anti-TfR1 monoclonal antibodies represent the most advanced class of TfR1-targeting therapeutics, with multiple antibody formats being evaluated in clinical trials[51]. These antibodies block transferrin binding to TfR1, preventing iron-loaded transferrin internalization and causing iron starvation in target cells. Some anti-TfR1 antibodies show rapid internalization upon binding, making them suitable for delivery of attached therapeutic cargos into cells[51]. This property has enabled development of anti-TfR1 antibody-drug conjugates and fusion proteins combining anti-TfR1 antibodies with toxins, enzymes, or other therapeutic agents, allowing selective drug delivery to TfR1-expressing cancer cells[51].
InatherYs (now part of the InatherYs group), a biotechnology company in Ăvry, France, developed INA01, an anti-CD71 antibody candidate demonstrating efficacy in preclinical studies for treating two incurable orphan hematologic malignanciesâadult T cell leukemia (ATLL) caused by human T-lymphotropic virus-1 (HTLV-1) infection and mantle cell lymphoma (MCL)[1]. These findings suggest that TfR1-targeted approaches may prove particularly valuable for treating malignancies in which TfR1 is particularly highly expressed or functionally critical for survival. Additionally, researchers have exploited the TfR1 transcytosis pathway at the blood-brain barrier for delivery of anti-TfR1 antibody fusion proteins carrying therapeutic cargos to brain tissues, enabling treatment of central nervous system diseases including glioblastoma and other CNS malignancies[24][51].
TfR1 belongs to the M28 family of zinc-dependent peptidases and shares structural homology with numerous peptidase family members, including glutamate carboxypeptidase II (GCP2, also called PSMA), N-acetylated alpha-linked acidic dipeptidase (NAALAD), and related proteins[45][49]. Despite this structural similarity to catalytically active peptidases, TfR1 itself is catalytically inactive, having diverged from peptidase family members through loss of critical catalytic residues while retaining the overall structural scaffold[43]. This apparent evolutionary conversion of an active peptidase domain into a ligand-binding domain demonstrates how evolution repurposes protein domains for novel functions while maintaining structural integrity[49]. The transfer receptor family in primates is represented by at least seven different homologous proteins, indicating repeated gene duplication events in vertebrate evolution, likely reflecting divergent specialization of these receptors for distinct biological roles[45].
Comparative genomic analyses have revealed evidence for positive selection acting on the TFRC gene during the evolution of Caniformia (the clade including dogs and their relatives), suggesting that specific amino acid changes in TfR1 confer adaptive advantages in these species[48]. This evolutionary signature of positive selection on a receptor gene is relatively uncommon and suggests that changes in iron metabolism or iron sensing may have provided fitness advantages during caniform evolution, perhaps related to changes in dietary iron sources or metabolic rates[48]. Such evolutionary adaptation at TfR1 demonstrates that the specific sequence of this iron transport protein is subject to selective constraints and that functional optimization of TfR1 for each species' particular physiological requirements drives amino acid evolution[48].
Transferrin receptor protein 1 represents one of the most comprehensively characterized iron transport proteins, reflecting both its fundamental biological importance and its prominence as a therapeutic target. The sophisticated molecular mechanisms governing TfR1 functionâincluding pH-sensitive binding to transferrin with active promotion of iron release, rapid endocytic internalization through clathrin-dependent pathways, highly regulated recycling through Rab-mediated trafficking, and post-transcriptional control through iron-responsive elementsâdemonstrate the cellular investment in ensuring appropriate iron delivery matched to cellular needs. The protein's participation in diverse biological processes ranging from hemoglobin synthesis in erythroid precursors to iron sensing controlling systemic hepcidin production illustrates how a single receptor integrates multiple physiological signals to coordinate iron metabolism at cellular and organismal levels.
The emerging recognition of TfR1's roles beyond basic iron transportâincluding its function as a regulator of alternative splicing patterns, its involvement in viral cell entry, and its pathogenic role in autoimmune diseasesâsuggests that our understanding of this protein's biology remains incomplete. Future research employing structural biology, single-molecule studies, and system-wide approaches will likely reveal additional regulatory mechanisms and biological contexts in which TfR1 participates. The therapeutic potential of targeting TfR1 in cancer, leveraging the protein's abundant expression on rapidly dividing cells and the critical importance of iron for DNA synthesis, continues to drive drug development efforts that may provide effective treatments for otherwise intractable malignancies. As research deepens understanding of TfR1 biology and function, this protein will undoubtedly continue serving as a paradigm for understanding how cells precisely regulate nutrient acquisition in response to metabolic demands and environmental iron availability.
id: P02786
gene_symbol: TFRC
product_type: PROTEIN
status: COMPLETE
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: >-
TFRC encodes transferrin receptor protein 1 (TfR1/CD71), the major cell-surface
receptor for cellular iron import. It is a homodimeric type II transmembrane
glycoprotein that preferentially binds diferric (holo-)transferrin and internalizes
the ligand-receptor complex via clathrin/AP-2-mediated endocytosis; iron is
released in acidic endosomes (pH <= 5.5) and the apo-transferrin/TfR1 complex is
recycled to the plasma membrane, completing the cycle in approximately 10-20
minutes. Internalization depends on the cytoplasmic tyrosine-based YTRF motif,
and germline variants affecting this region cause an internalization defect and
combined immunodeficiency, identifying TfR1 as a non-redundant immune-metabolic
checkpoint that supplies iron for lymphocyte proliferation and mitochondrial
metabolism. A proteolytically shed soluble ectodomain (sTfR) circulates and serves
as a clinical biomarker of iron demand/erythropoiesis. TfR1 is also exploited
pathologically as an entry receptor by several viruses/pathogens and is a leading
target for receptor-mediated transcytosis across the blood-brain barrier and for
CD71-based cancer-targeted delivery.
existing_annotations:
- term:
id: GO:0006826
label: iron ion transport
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
TfR1 is the major cell-surface receptor mediating cellular iron import by
binding diferric transferrin and internalizing the ligand-receptor complex.
Iron ion transport is a correct high-level process term for this receptor.
action: ACCEPT
reason: >-
Core biological process supported by phylogenetic inference and directly
corroborated by falcon deep research describing TfR1-mediated iron import.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-perplexity.md
supporting_text: See deep research file for comprehensive analysis
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0006879
label: intracellular iron ion homeostasis
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
By controlling the rate of transferrin-bound iron import into the cell, TfR1 is a
central determinant of intracellular iron levels, and its own expression is
feedback-regulated by cellular iron status via IRE/IRP control of its mRNA.
action: ACCEPT
reason: >-
Core process consistent with phylogenetic inference and the receptor's defining
iron-import function; corroborated by deep research describing TfR1 as the major
receptor for cellular iron import.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0009897
label: external side of plasma membrane
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
TfR1 is a type II transmembrane protein whose large C-terminal ectodomain (residues
89-760) faces the extracellular space, where it binds holo-transferrin at the cell
surface. The external side of plasma membrane is the correct location for the
ligand-binding ectodomain.
action: ACCEPT
reason: >-
Consistent with UniProt topology (extracellular ligand-binding domain) and with the
cell-surface receptor function supported by phylogenetic inference.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0046718
label: symbiont entry into host cell
evidence_type: IEA
original_reference_id: GO_REF:0000108
review:
summary: >-
TfR1 is exploited as a cell-entry receptor by several pathogens, including New World
hemorrhagic fever arenaviruses (Machupo, Junin, Guanarito), rabies virus, and
Plasmodium vivax reticulocyte invasion. This term captures the host-factor role in
symbiont/pathogen entry.
action: KEEP_AS_NON_CORE
reason: >-
A genuine but pathogen-exploited (non-core) role distinct from the physiological
iron-uptake function; supported by experimental structural studies of arenavirus and
P. vivax interactions with TfR1 and by UniProt microbial-infection annotations.
supported_by:
- reference_id: PMID:20208545
supporting_text: >-
The GP1 subunit of the surface glycoprotein mediates cell attachment through
transferrin receptor 1 (TfR1)
- reference_id: PMID:29302006
supporting_text: Transferrin receptor 1 is a reticulocyte-specific receptor for Plasmodium vivax
- term:
id: GO:0001618
label: virus receptor activity
evidence_type: IEA
original_reference_id: GO_REF:0000043
review:
summary: >-
Human TfR1 serves as a cell-surface entry receptor for several viruses, including
New World hemorrhagic fever arenaviruses (which engage the apical TfR1 domain via
their GP1 glycoprotein) and rabies virus. This is a bona fide virus receptor activity.
action: KEEP_AS_NON_CORE
reason: >-
Well-documented but pathogen-exploited (non-core) molecular function distinct from
the physiological transferrin receptor activity; structurally demonstrated for
arenaviruses and annotated for rabies/SARS-CoV-2 in UniProt.
supported_by:
- reference_id: PMID:20208545
supporting_text: >-
The GP1 subunit of the surface glycoprotein mediates cell attachment through
transferrin receptor 1 (TfR1)
- term:
id: GO:0004998
label: transferrin receptor activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: >-
Transferrin receptor activity is the core molecular function of TFRC. The
homodimeric receptor preferentially binds diferric (holo-)transferrin and
internalizes the ligand-receptor complex for iron delivery.
action: ACCEPT
reason: >-
Defining molecular function, also supported by multiple IDA annotations and
corroborated by falcon deep research.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: preferentially binds diferric transferrin
- term:
id: GO:0005576
label: extracellular region
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: >-
A proteolytically shed soluble ectodomain of TfR1 (sTfR) circulates in serum,
consistent with localization to the extracellular region. This is a broad
UniProt subcellular-location mapping that captures the shed soluble form.
action: KEEP_AS_NON_CORE
reason: >-
Correct broad location for the shed soluble receptor (sTfR) rather than the core
membrane receptor; supported by characterization of the released soluble receptor
in serum/culture medium.
supported_by:
- reference_id: PMID:1871153
supporting_text: Characterization of transferrin receptor released by
K562 erythroleukemia cells.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: >-
TfR1 is a type II transmembrane glycoprotein localized at the plasma membrane,
where it binds diferric transferrin at the cell surface before internalization.
action: ACCEPT
reason: >-
Primary subcellular location of the receptor, supported by extensive IDA/TAS
evidence and corroborated by falcon deep research describing TfR1 as a
cell-surface receptor.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0006897
label: endocytosis
evidence_type: IEA
original_reference_id: GO_REF:0000043
review:
summary: >-
TfR1 is internalized with its transferrin ligand by clathrin-mediated
endocytosis. This is a high-level parent of the more specific
receptor-mediated endocytosis term that is also annotated.
action: MODIFY
reason: >-
Correct but more general than warranted; the specific mechanism is clathrin/AP-2
receptor-mediated endocytosis, which is independently annotated. Replace with the
more informative child term.
proposed_replacement_terms:
- id: GO:0006898
label: receptor-mediated endocytosis
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic
endosomes, and recycles apo-transferrin/TfR1 to the surface
- term:
id: GO:0006898
label: receptor-mediated endocytosis
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: >-
TfR1 internalizes diferric transferrin via clathrin/AP-2-mediated endocytosis,
a canonical example of receptor-mediated endocytosis central to the iron
uptake cycle.
action: ACCEPT
reason: >-
Well-established trafficking mechanism, also supported by IDA evidence and by
falcon deep research describing the clathrin/AP-2 endocytic cycle.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic
endosomes, and recycles apo-transferrin/TfR1 to the surface
- term:
id: GO:0007165
label: signal transduction
evidence_type: IEA
original_reference_id: GO_REF:0000043
review:
summary: >-
This very general process term is assigned from UniProt keyword mapping. While
TfR1 has reported signaling roles (e.g. modulating JNK signaling via stearoylation
and contributing to IKK-NF-kB signaling), the bare "signal transduction" term is
uninformative and not a core function.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Over-general keyword-derived term; the receptor's defining role is iron uptake, and
its specific signaling contributions (JNK regulation, NF-kB) are better captured by
the dedicated IMP annotations rather than a bare signal-transduction term.
supported_by:
- reference_id: PMID:23016877
supporting_text: >-
Taken together, these results indicate a new function for TfR1 in the control of
IKK and NF-ÎșB.
- term:
id: GO:0033572
label: transferrin transport
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: >-
TfR1 mediates transferrin transport by binding holo-transferrin, internalizing
it, releasing iron in acidic endosomes, and recycling apo-transferrin back to
the cell surface.
action: ACCEPT
reason: >-
Core process consistent with the transferrin endocytic recycling cycle described
in falcon deep research.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic
endosomes, and recycles apo-transferrin/TfR1 to the surface
- term:
id: GO:0042470
label: melanosome
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: >-
TfR1 has been detected in melanosome proteomes, the basis for this UniProt
location mapping. This likely reflects co-purification of endosomal/recycling
membranes with melanosomes rather than a dedicated melanosomal function.
action: KEEP_AS_NON_CORE
reason: >-
Derived from high-throughput melanosome proteomics; not a core localization but
plausible given TfR1's broad presence on endosomal/recycling membranes that
overlap with the melanosome maturation pathway. Retained as non-core.
- term:
id: GO:0060586
label: multicellular organismal-level iron ion homeostasis
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: >-
Beyond cell-autonomous iron handling, TfR1 contributes to organism-level iron
homeostasis: TfR1-knockout mice die in utero with severe anemia, and TfR1
participates in the HFE/TfR2 hepcidin-regulatory axis sensing body iron status.
action: ACCEPT
reason: >-
Supported experimentally by the requirement of TfR1 for erythropoiesis in vivo and
by its role in the HFE-dependent iron-sensing system; also independently annotated
by IDA (PMID:26642240).
supported_by:
- reference_id: PMID:10192390
supporting_text: >-
Transferrin receptor is necessary for development of erythrocytes and the
nervous system.
- term:
id: GO:0001666
label: response to hypoxia
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
TFRC is a well-established HIF target gene whose expression is induced under
hypoxia (it contains a functional hypoxia-response element), consistent with a
response to hypoxia. This term was transferred from experimentally annotated
orthologs.
action: KEEP_AS_NON_CORE
reason: >-
Biologically plausible (TFRC is HIF-regulated and induced by hypoxia) but a
regulatory/response role downstream of the core iron-uptake function rather than a
defining activity; retained as non-core.
- term:
id: GO:0005615
label: extracellular space
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
The shed soluble transferrin receptor (sTfR) is released into serum and the
extracellular space, consistent with this localization.
action: KEEP_AS_NON_CORE
reason: >-
Reflects the shed soluble ectodomain rather than the membrane receptor's core
function; supported by characterization of the released soluble receptor.
supported_by:
- reference_id: PMID:1871153
supporting_text: Characterization of transferrin receptor released by
K562 erythroleukemia cells.
- term:
id: GO:0005768
label: endosome
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
TfR1 traffics through endosomes during the transferrin cycle, where iron is
released at acidic pH before receptor recycling. Endosome is a correct location.
action: ACCEPT
reason: >-
Core compartment of the iron-release/recycling cycle; consistent with multiple
IDA endosome annotations and with the trafficking cycle described in deep research.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: 'acidic endosomes (pH †5.5)'
- term:
id: GO:0005769
label: early endosome
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
After clathrin-mediated internalization, the TfR1-transferrin complex traffics
to acidic (early) endosomes where iron is released at pH <= 5.5 before receptor
recycling.
action: ACCEPT
reason: >-
Consistent with the endosomal step of the iron-release cycle described in falcon
deep research.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: 'acidic endosomes (pH †5.5)'
- term:
id: GO:0005905
label: clathrin-coated pit
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
TfR1 concentrates in clathrin-coated pits as cargo for clathrin/AP-2-mediated
endocytosis, the entry point of the iron uptake cycle.
action: ACCEPT
reason: >-
Consistent with the clathrin/AP-2 endocytic mechanism described in falcon deep
research and with the IDA clathrin-coated pit annotation.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic
endosomes, and recycles apo-transferrin/TfR1 to the surface
- term:
id: GO:0006953
label: acute-phase response
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
This term was transferred from an ortholog. There is no strong direct evidence
that human TfR1 functions in the acute-phase response; TFRC expression is more
directly tied to iron status, proliferation, and hypoxia than to acute-phase
inflammation.
action: REMOVE
reason: >-
Weakly supported ortholog-transferred annotation with no specific human experimental
backing; not part of the receptor's established functional repertoire and risks
over-annotation.
- term:
id: GO:0007584
label: response to nutrient
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
TFRC expression and surface levels respond to the cell's nutrient/iron status,
broadly consistent with a response to nutrient. This is an ortholog-transferred
term subsumed by the more specific response-to-iron annotation.
action: KEEP_AS_NON_CORE
reason: >-
Plausible but generic response term that is better captured by the specific
response-to-iron-ion annotation; retained as non-core.
- term:
id: GO:0009897
label: external side of plasma membrane
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: >-
TfR1 is a type II transmembrane protein whose large C-terminal ectodomain faces
the extracellular space and binds holo-transferrin at the cell surface. The
external side of plasma membrane is the correct location for the ligand-binding
ectodomain.
action: ACCEPT
reason: >-
Consistent with UniProt topology and the cell-surface receptor function; duplicates
the accepted IBA annotation of the same term.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0009986
label: cell surface
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: >-
TfR1 (CD71) is a canonical cell-surface receptor displayed on the plasma membrane,
where it binds circulating holo-transferrin.
action: ACCEPT
reason: >-
Defining surface localization of the receptor; also supported by ISS/IDA cell
surface annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0010039
label: response to iron ion
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
TFRC mRNA contains iron-responsive elements (IREs) in its 3' UTR; under iron
depletion, IRP1/IRP2 binding stabilizes the transcript and increases receptor
expression, while iron repletion lowers it. TfR1 expression is thus directly
responsive to cellular iron levels.
action: ACCEPT
reason: >-
Well-established IRE/IRP-mediated regulation of TFRC by iron status makes response
to iron ion a genuine and informative process annotation.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-perplexity.md
supporting_text: >-
The 3âČ untranslated region (3âČ UTR) of TFRC mRNA contains five IREs, which are
short conserved stem-loop structures recognized by two functionally similar iron
regulatory proteins, IRP1 and IRP2
- term:
id: GO:0010042
label: response to manganese ion
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
This response-to-metal term was transferred from an ortholog. TfR1 can mediate
cellular uptake of non-transferrin metals (TfR1 endocytoses Mn-loaded transferrin),
but there is little direct human evidence for a dedicated manganese-response role.
action: KEEP_AS_NON_CORE
reason: >-
Weakly-supported ortholog-transferred response term, peripheral to the receptor's
core iron-uptake function; retained as non-core rather than removed because TfR1 can
transport manganese-bound transferrin.
- term:
id: GO:0016020
label: membrane
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
TfR1 is an integral membrane protein. "Membrane" is a correct but very general
location that is subsumed by the more specific plasma-membrane and
endosome-membrane annotations.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Uninformatively broad cellular-component term; more specific membrane locations
(plasma membrane, endosome membrane, recycling endosome membrane) are annotated.
- term:
id: GO:0030316
label: osteoclast differentiation
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
Iron uptake via TfR1 has been implicated in osteoclast differentiation and bone
metabolism, the basis for this ortholog-transferred term. This is a downstream,
tissue-specific consequence of iron supply rather than a core receptor function.
action: KEEP_AS_NON_CORE
reason: >-
Plausible developmental/differentiation role secondary to iron delivery, but not a
defining molecular activity; retained as non-core.
- term:
id: GO:0030544
label: Hsp70 protein binding
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
This molecular-function term was transferred from an ortholog. There is no robust
direct human evidence that TfR1 itself binds Hsp70; HSPA8/HSC70 acts on the clathrin
coat during vesicle uncoating rather than binding TfR1 directly.
action: REMOVE
reason: >-
Weakly-supported ortholog-transferred molecular-function annotation lacking direct
human experimental evidence for a TfR1-Hsp70 interaction; risks over-annotation.
- term:
id: GO:0032526
label: response to retinoic acid
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
TFRC expression can be modulated by retinoic acid during differentiation, the basis
for this ortholog-transferred response term. This is a peripheral transcriptional
response, not a core receptor function.
action: KEEP_AS_NON_CORE
reason: >-
Generic differentiation-related response term transferred from an ortholog;
peripheral to the core iron-uptake function and retained as non-core.
- term:
id: GO:0046688
label: response to copper ion
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
This response-to-metal term was transferred from an ortholog. There is little
direct human evidence linking TfR1 specifically to a copper-ion response distinct
from general iron/metal handling.
action: KEEP_AS_NON_CORE
reason: >-
Weakly-supported ortholog-transferred response term peripheral to the receptor's
core iron-uptake function; retained as non-core.
- term:
id: GO:0048471
label: perinuclear region of cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
TfR1-positive recycling endosomes concentrate in the perinuclear endocytic
recycling compartment, consistent with this localization. Also supported by IDA
annotations.
action: ACCEPT
reason: >-
The perinuclear endocytic recycling compartment is a canonical TfR1 localization;
corroborated by IDA perinuclear annotations (PMID:16380373, PMID:20202662).
- term:
id: GO:0051087
label: protein-folding chaperone binding
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
This molecular-function term was transferred from an ortholog and lacks direct
human evidence that TfR1 binds protein-folding chaperones; the chaperone HSPA8
functions on the clathrin coat during uncoating rather than on TfR1 itself.
action: REMOVE
reason: >-
Weakly-supported ortholog-transferred term without direct human experimental
support; over-annotation analogous to the Hsp70-binding entry.
- term:
id: GO:0055037
label: recycling endosome
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: >-
Following iron release in acidic endosomes, the apo-transferrin/TfR1 complex
is recycled back to the plasma membrane via recycling endosomes, completing the
~10-20 minute transferrin cycle.
action: ACCEPT
reason: >-
TfR1 is a canonical recycling-endosome marker; supported by falcon deep research
describing receptor recycling to the surface.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic
endosomes, and recycles apo-transferrin/TfR1 to the surface
- term:
id: GO:0055038
label: recycling endosome membrane
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
As an integral membrane protein recycled via recycling endosomes, TfR1 resides in
the recycling endosome membrane during the transferrin cycle.
action: ACCEPT
reason: >-
Consistent with the canonical TfR1 recycling pathway; complements the accepted
recycling endosome annotation.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic
endosomes, and recycles apo-transferrin/TfR1 to the surface
- term:
id: GO:0070062
label: extracellular exosome
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
TfR1 is a well-known marker of exosomes/extracellular vesicles, secreted during
reticulocyte maturation when the receptor is shed via the multivesicular-body/exosome
pathway. Detection in exosome proteomes is well documented.
action: KEEP_AS_NON_CORE
reason: >-
Genuine but secondary localization reflecting exosomal sorting of TfR1 during
reticulocyte maturation; not the core membrane-receptor function. Retained as
non-core.
- term:
id: GO:0098794
label: postsynapse
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
TfR1-positive recycling endosomes are present in dendritic spines/postsynaptic
compartments, where they supply membrane and traffic neurotransmitter receptors.
This term derives from ortholog transfer of neuronal recycling-endosome studies.
action: KEEP_AS_NON_CORE
reason: >-
TfR1 marks postsynaptic recycling endosomes in neurons, a tissue-specific
localization secondary to its general recycling-endosome role; retained as non-core.
- term:
id: GO:0098944
label: postsynaptic recycling endosome membrane
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
TfR1 marks recycling endosomes in postsynaptic compartments of neurons. This term
was transferred from an ortholog and is a specialized, neuron-specific instance of
the recycling endosome membrane localization.
action: KEEP_AS_NON_CORE
reason: >-
Tissue-specific (neuronal) recycling-endosome localization secondary to the general
recycling function; retained as non-core.
- term:
id: GO:0098978
label: glutamatergic synapse
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
TfR1 localizes to glutamatergic synapses via its presence in dendritic recycling
endosomes that traffic AMPA-type glutamate receptors. This SynGO-style localization
was transferred from an ortholog.
action: KEEP_AS_NON_CORE
reason: >-
Neuron-specific synaptic localization secondary to the general recycling-endosome
role; retained as non-core.
- term:
id: GO:0099072
label: regulation of postsynaptic membrane neurotransmitter receptor
levels
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
TfR1-positive recycling endosomes contribute to trafficking of postsynaptic
neurotransmitter (e.g. AMPA) receptors, influencing their surface levels. This
process term was transferred from an ortholog.
action: KEEP_AS_NON_CORE
reason: >-
Neuron-specific process secondary to the general recycling-endosome function; not a
core role of the iron receptor and retained as non-core.
- term:
id: GO:1990712
label: HFE-transferrin receptor complex
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
TfR1 forms a stable complex with the hemochromatosis protein HFE; the crystal
structure shows a 2:1 TfR:HFE stoichiometry, and HFE binding lowers TfR1's affinity
for transferrin, linking TfR1 to systemic iron sensing.
action: ACCEPT
reason: >-
Well-documented protein complex supported by IDA structural and biochemical studies
(also annotated by IDA from PMID:9546397, PMID:9465039, PMID:9990067).
supported_by:
- reference_id: PMID:9546397
supporting_text: >-
TfR:HFE stoichiometry (2:1) differs from TfR:transferrin stoichiometry (2:2)
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:14691533
review:
summary: >-
This IPI captures binding of TfR1 to its ligands (transferrin, HFE, HFE2/hemojuvelin),
characterized structurally/biochemically. The bare "protein binding" term is
uninformative; the specific, informative function is transferrin receptor activity.
action: MODIFY
reason: >-
Avoid endorsing bare protein binding; the experiment characterizes ligand recognition
by the receptor, best captured by transferrin receptor activity.
proposed_replacement_terms:
- id: GO:0004998
label: transferrin receptor activity
supported_by:
- reference_id: PMID:14691533
supporting_text: >-
Cell surface TfR binds to circulating iron-loaded transferrin (Fe-Tf) and
transports it to acidic endosomes
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:15965644
review:
summary: >-
This IPI reflects the TfR1-HFE interaction studied via the HFE Q283P variant. The
bare "protein binding" term is uninformative; the specific outcome is formation of
the HFE-transferrin receptor complex.
action: MODIFY
reason: >-
Avoid endorsing bare protein binding; the documented interaction is with HFE, best
captured by the HFE-transferrin receptor complex term.
proposed_replacement_terms:
- id: GO:1990712
label: HFE-transferrin receptor complex
supported_by:
- reference_id: PMID:9546397
supporting_text: >-
HFE binds to transferrin receptor (TfR) and reduces its affinity for iron-loaded
transferrin
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16271884
review:
summary: >-
This IPI documents TfR1 binding to transferrin and the receptor's active role in
stimulating iron release at endosomal pH. The bare "protein binding" term is
uninformative; the specific function is transferrin receptor activity.
action: MODIFY
reason: >-
Avoid endorsing bare protein binding; the study characterizes the receptor's
transferrin-binding and iron-release-promoting activity.
proposed_replacement_terms:
- id: GO:0004998
label: transferrin receptor activity
supported_by:
- reference_id: PMID:16271884
supporting_text: >-
Human transferrin receptor 1 (TfR) binds iron-loaded transferrin (Fe-Tf) and
transports it to acidic endosomes where iron is released in a TfR-facilitated
process
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16325581
review:
summary: >-
This IPI reflects the interaction between TfR1 and the endocytic adaptor TTP/SH3BP4,
which selectively regulates TfR1 internalization through TfR-containing clathrin-coated
pits and vesicles. The bare "protein binding" is uninformative.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Avoid endorsing bare protein binding; the biologically informative aspect (regulated
receptor internalization) is captured by the GO:0031623 receptor internalization
annotation. The bare binding term itself is non-informative.
supported_by:
- reference_id: PMID:16325581
supporting_text: >-
TTP (SH3BP4), a SH3-containing protein, specifically regulates the internalization
of the transferrin receptor (TfR)
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16354665
review:
summary: >-
This IPI reflects TfR1 binding its ligand ferritransferrin (holo-transferrin), which
regulates proteolytic shedding of the soluble receptor. The bare "protein binding"
term is uninformative; the specific function is transferrin receptor activity.
action: MODIFY
reason: >-
Avoid endorsing bare protein binding; the documented interaction is ligand binding by
the receptor, best captured by transferrin receptor activity.
proposed_replacement_terms:
- id: GO:0004998
label: transferrin receptor activity
supported_by:
- reference_id: PMID:16354665
supporting_text: >-
sTfR release decreases with increasing ferritransferrin concentrations, whereas
apo-transferrin exhibits no inhibitory effect
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:20133674
review:
summary: >-
This IPI reflects TfR1 binding and internalizing H-chain ferritin (HFt), an
additional ligand recognized by the apical domain distinct from the transferrin
site. The bare "protein binding" term is uninformative; the experiment demonstrates
a specific ligand-binding/uptake function.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Avoid endorsing bare protein binding; the H-ferritin uptake activity is a genuine
but non-core additional ligand-binding role, and the bare binding term is
uninformative.
supported_by:
- reference_id: PMID:20133674
supporting_text: >-
we identified human transferrin receptor-1 (TfR1) as an important receptor for
HFt with little or no binding to LFt
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:20404192
review:
summary: >-
This IPI documents transferrin-TfR1 interactions characterized by native mass
spectrometry. The bare "protein binding" term is uninformative; the specific
function is transferrin receptor activity.
action: MODIFY
reason: >-
Avoid endorsing bare protein binding; the interaction studied is ligand binding by
the receptor, best captured by transferrin receptor activity.
proposed_replacement_terms:
- id: GO:0004998
label: transferrin receptor activity
supported_by:
- reference_id: PMID:20404192
supporting_text: >-
Noncanonical interactions between serum transferrin and transferrin receptor
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:20618438
review:
summary: >-
This IPI reflects the functional interaction between HFE and TfR1, whereby HFE
decreases cell-surface transferrin binding by TfR1. The bare "protein binding" term
is uninformative; the specific complex is the HFE-transferrin receptor complex.
action: MODIFY
reason: >-
Avoid endorsing bare protein binding; the documented HFE-TfR1 interaction is better
captured by the HFE-transferrin receptor complex term.
proposed_replacement_terms:
- id: GO:1990712
label: HFE-transferrin receptor complex
supported_by:
- reference_id: PMID:20618438
supporting_text: >-
its ability to decrease cell surface transferrin binding
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:21788477
review:
summary: >-
This IPI documents transferrin binding to TfR1 and how it primes the receptor to
potentiate iron release at endosomal pH. The bare "protein binding" term is
uninformative; the specific function is transferrin receptor activity.
action: MODIFY
reason: >-
Avoid endorsing bare protein binding; the study characterizes ligand binding and the
receptor's iron-release-promoting activity, best captured by transferrin receptor
activity.
proposed_replacement_terms:
- id: GO:0004998
label: transferrin receptor activity
supported_by:
- reference_id: PMID:21788477
supporting_text: >-
How the binding of human transferrin primes the transferrin receptor
potentiating iron release at endosomal pH
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:23384347
review:
summary: >-
This IPI reflects processing of the TfR1 membrane stub (left after ectodomain
shedding) by the intramembrane protease SPPL2b. The bare "protein binding" term
describes TfR1 as a protease substrate rather than conferring an informative
molecular function.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Avoid endorsing bare protein binding; this captures TfR1 as a substrate of SPPL2b,
a peripheral processing event, and the bare binding term is uninformative.
supported_by:
- reference_id: PMID:23384347
supporting_text: The transferrin receptor-1 membrane stub undergoes
intramembrane proteolysis by signal peptide peptidase-like 2b.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:25416956
review:
summary: >-
This IPI derives from a high-throughput proteome-scale interactome (Y2H) screen.
Such screens report binary interactions without functional context, and the bare
"protein binding" term is uninformative.
action: MARK_AS_OVER_ANNOTATED
reason: >-
High-throughput interactome hit lacking specific functional interpretation; bare
protein binding is non-informative and not a core function.
supported_by:
- reference_id: PMID:25416956
supporting_text: A proteome-scale map of the human interactome network.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:29302006
review:
summary: >-
This IPI reflects binding of TfR1 to the Plasmodium vivax ligand PvRBP2b during
reticulocyte invasion. The bare "protein binding" term is uninformative; the
biologically meaningful role (host receptor for pathogen entry) is captured by the
symbiont-entry/virus-receptor annotations.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Avoid endorsing bare protein binding; this host-pathogen interaction is informative
only as a pathogen-entry receptor role, already annotated, and the bare binding term
is non-informative.
supported_by:
- reference_id: PMID:29302006
supporting_text: Transferrin receptor 1 is a reticulocyte-specific
receptor for Plasmodium vivax.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:29950717
review:
summary: >-
This IPI reflects the cryo-EM-resolved interaction between TfR1 and the P. vivax
invasion ligand (PvRBP2b/transferrin complex). The bare "protein binding" term is
uninformative; the meaningful role (pathogen-entry receptor) is annotated elsewhere.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Avoid endorsing bare protein binding; this host-pathogen structural interaction is
captured by the pathogen-entry receptor annotations and the bare term is
non-informative.
supported_by:
- reference_id: PMID:29950717
supporting_text: Cryo-EM structure of an essential Plasmodium
vivax invasion complex.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:32296183
review:
summary: >-
This IPI derives from a high-throughput binary interactome (HuRI) reference map.
Such screens report binary interactions without functional context, and the bare
"protein binding" term is uninformative.
action: MARK_AS_OVER_ANNOTATED
reason: >-
High-throughput interactome hit lacking specific functional interpretation; bare
protein binding is non-informative and not a core function.
supported_by:
- reference_id: PMID:32296183
supporting_text: A reference map of the human binary protein interactome.
- term:
id: GO:0042802
label: identical protein binding
evidence_type: IPI
original_reference_id: PMID:20208545
review:
summary: >-
TfR1 functions as a homodimer, and the arenavirus GP1 structural study resolved
TfR1 in its dimeric form. Identical protein binding (homodimerization) is consistent
with the receptor's architecture.
action: ACCEPT
reason: >-
TfR1 is a well-characterized disulfide-linked homodimer; identical protein binding
is correct and complements the protein homodimerization activity annotation.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: homodimeric transmembrane glycoprotein
- term:
id: GO:0042802
label: identical protein binding
evidence_type: IPI
original_reference_id: PMID:23384347
review:
summary: >-
TfR1 is a homodimer; the SPPL2b processing study examined the dimeric receptor.
Identical protein binding (homodimerization) is consistent with the receptor's
architecture.
action: ACCEPT
reason: >-
TfR1 is a well-characterized homodimer; identical protein binding is correct and
complements the protein homodimerization activity annotation.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: homodimeric transmembrane glycoprotein
- term:
id: GO:0042802
label: identical protein binding
evidence_type: IPI
original_reference_id: PMID:29302006
review:
summary: >-
TfR1 is a homodimer, engaged in its dimeric form during P. vivax reticulocyte
invasion studies. Identical protein binding (homodimerization) is consistent with
the receptor's architecture.
action: ACCEPT
reason: >-
TfR1 is a well-characterized homodimer; identical protein binding is correct and
complements the protein homodimerization activity annotation.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: homodimeric transmembrane glycoprotein
- term:
id: GO:0004998
label: transferrin receptor activity
evidence_type: IDA
original_reference_id: PMID:9465039
review:
summary: >-
Direct assay of cell-associated transferrin demonstrated TfR1's transferrin-binding
(receptor) activity, modulated by HFE. This is the core molecular function.
action: ACCEPT
reason: >-
Defining molecular function with direct experimental support; HFE overexpression
measurably altered the receptor's transferrin affinity.
supported_by:
- reference_id: PMID:9465039
supporting_text: >-
the overexpressed wild-type HFE protein decreases the affinity of the TfR for
transferrin
- term:
id: GO:0006898
label: receptor-mediated endocytosis
evidence_type: IDA
original_reference_id: PMID:9465039
review:
summary: >-
TfR1 internalizes transferrin via receptor-mediated (clathrin-dependent) endocytosis,
the basis of the iron-uptake cycle assayed here.
action: ACCEPT
reason: >-
Core trafficking process directly supported and duplicated by the accepted IEA
receptor-mediated endocytosis annotation.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic
endosomes, and recycles apo-transferrin/TfR1 to the surface
- term:
id: GO:0007166
label: cell surface receptor signaling pathway
evidence_type: IDA
original_reference_id: PMID:9465039
review:
summary: >-
PMID:9465039 characterizes the HFE-TfR complex and its effect on transferrin
affinity; it does not demonstrate a classical cell-surface receptor signaling
cascade. TfR1 is primarily an endocytic/transport receptor rather than a signaling
receptor, although it modulates JNK and NF-kB pathways in other studies.
action: REMOVE
reason: >-
The cited paper does not support a canonical signaling pathway role; TfR1's
documented signaling effects (JNK, NF-kB) are better captured by the specific IMP
annotations. This generic term is over-annotation for this reference.
supported_by:
- reference_id: PMID:9465039
supporting_text: >-
both the wild-type and H63D HFE proteins form stable complexes with the
transferrin receptor (TfR)
- term:
id: GO:0033572
label: transferrin transport
evidence_type: IDA
original_reference_id: PMID:9465039
review:
summary: >-
TfR1 mediates uptake and transport of transferrin-bound iron, assayed via
cell-associated transferrin in this study.
action: ACCEPT
reason: >-
Core process of the receptor; directly supported and consistent with the transferrin
endocytic recycling cycle.
supported_by:
- reference_id: PMID:9465039
supporting_text: >-
Studies on cell-associated transferrin at 37 degrees C suggest that the
overexpressed wild-type HFE protein decreases the affinity of the TfR for
transferrin
- term:
id: GO:0004998
label: transferrin receptor activity
evidence_type: IDA
original_reference_id: PMID:18353247
review:
summary: >-
This study assayed transferrin binding and transferrin-dependent iron uptake,
supporting transferrin receptor activity. (The paper focuses on TfR2/HFE but uses
diferric-transferrin binding/uptake assays.)
action: ACCEPT
reason: >-
Core molecular function with direct functional assay of diferric-transferrin binding
and uptake.
supported_by:
- reference_id: PMID:18353247
supporting_text: >-
increased affinity for diferric transferrin, increased transferrin-dependent iron
uptake
- term:
id: GO:0033572
label: transferrin transport
evidence_type: IDA
original_reference_id: PMID:18353247
review:
summary: >-
Transferrin-dependent iron uptake was directly measured, supporting transferrin
transport.
action: ACCEPT
reason: >-
Core process; directly supported by transferrin-dependent iron uptake assays.
supported_by:
- reference_id: PMID:18353247
supporting_text: >-
increased affinity for diferric transferrin, increased transferrin-dependent iron
uptake
- term:
id: GO:0005764
label: lysosome
evidence_type: IDA
original_reference_id: GO_REF:0000052
review:
summary: >-
A fraction of TfR1 traffics from recycling endosomes to lysosomes via a
Rab12-dependent constitutive degradation pathway, and TfR1 undergoes iron-induced
lysosomal degradation. Immunofluorescence localization to lysosomes is consistent
with this.
action: KEEP_AS_NON_CORE
reason: >-
Reflects the receptor's degradative trafficking branch rather than its core
recycling/uptake function; retained as non-core.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-perplexity.md
supporting_text: >-
Small GTPase Rab12 and its upstream activator Dennd3 regulate the trafficking of
TfR1 from recycling endosomes to lysosomes, with Rab12 activation promoting TfR1
degradation
- term:
id: GO:0005768
label: endosome
evidence_type: IDA
original_reference_id: GO_REF:0000052
review:
summary: >-
Immunofluorescence localizes TfR1 to endosomes, the compartment where iron is
released during the transferrin cycle. TfR1 is a canonical endosomal marker.
action: ACCEPT
reason: >-
Core localization directly supported by immunofluorescence and consistent with the
receptor's endosomal iron-release/recycling cycle.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: 'acidic endosomes (pH †5.5)'
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:38625739
review:
summary: >-
This IPI reports an interaction between TfR1 and the secreted micropeptide C4orf48
in a renal-fibrosis context. The bare "protein binding" term is uninformative and
this is a single, specialized disease-context interaction not part of TfR1's core
functional repertoire.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Avoid endorsing bare protein binding; a narrow disease-context interaction with no
bearing on the receptor's core function and no informative molecular-function term.
supported_by:
- reference_id: PMID:38625739
supporting_text: The secreted micropeptide C4orf48 enhances renal
fibrosis via an RNA-binding mechanism.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: IDA
original_reference_id: PMID:26642240
review:
summary: >-
The combined-immunodeficiency study measured TfR1 at the plasma membrane (increased
steady-state surface TfR1 in patient cells with the internalization-defective
variant), confirming plasma-membrane localization.
action: ACCEPT
reason: >-
Core localization directly supported; the pathogenic variant increases surface TfR1.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
Impaired TfR1 internalization (approximately fourfold lower internalization in
patient T cells in the reported assays) with increased steady-state surface TfR1
- term:
id: GO:0004998
label: transferrin receptor activity
evidence_type: IDA
original_reference_id: PMID:26642240
review:
summary: >-
Functional studies of the TFRC variant causing combined immunodeficiency confirmed
TfR1's transferrin receptor activity and its dependence on internalization for iron
delivery.
action: ACCEPT
reason: >-
Defining molecular function supported by disease-variant functional analysis.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
Shows TfR1 is not only an iron receptor but a nonredundant immune-metabolic
checkpoint
- term:
id: GO:0060586
label: multicellular organismal-level iron ion homeostasis
evidence_type: IDA
original_reference_id: PMID:26642240
review:
summary: >-
Patients with the internalization-defective TFRC variant show systemic
iron-handling consequences alongside immunodeficiency, supporting a role in
organism-level iron homeostasis.
action: ACCEPT
reason: >-
Supported by the human disease phenotype; complements the IEA organismal iron
homeostasis annotation.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
Shows TfR1 is not only an iron receptor but a nonredundant immune-metabolic
checkpoint
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5691154
review:
summary: >-
TfR1 is localized to the plasma membrane as a component of the Reactome
transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct
location for the cell-surface receptor.
action: ACCEPT
reason: >-
Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with
the receptor's primary cell-surface localization. Duplicates other accepted
plasma-membrane annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8866277
review:
summary: >-
TfR1 is localized to the plasma membrane as a component of the Reactome
transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct
location for the cell-surface receptor.
action: ACCEPT
reason: >-
Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with
the receptor's primary cell-surface localization. Duplicates other accepted
plasma-membrane annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8867754
review:
summary: >-
TfR1 is localized to the plasma membrane as a component of the Reactome
transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct
location for the cell-surface receptor.
action: ACCEPT
reason: >-
Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with
the receptor's primary cell-surface localization. Duplicates other accepted
plasma-membrane annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8867756
review:
summary: >-
TfR1 is localized to the plasma membrane as a component of the Reactome
transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct
location for the cell-surface receptor.
action: ACCEPT
reason: >-
Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with
the receptor's primary cell-surface localization. Duplicates other accepted
plasma-membrane annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8868071
review:
summary: >-
TfR1 is localized to the plasma membrane as a component of the Reactome
transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct
location for the cell-surface receptor.
action: ACCEPT
reason: >-
Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with
the receptor's primary cell-surface localization. Duplicates other accepted
plasma-membrane annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8868072
review:
summary: >-
TfR1 is localized to the plasma membrane as a component of the Reactome
transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct
location for the cell-surface receptor.
action: ACCEPT
reason: >-
Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with
the receptor's primary cell-surface localization. Duplicates other accepted
plasma-membrane annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8868230
review:
summary: >-
TfR1 is localized to the plasma membrane as a component of the Reactome
transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct
location for the cell-surface receptor.
action: ACCEPT
reason: >-
Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with
the receptor's primary cell-surface localization. Duplicates other accepted
plasma-membrane annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8868236
review:
summary: >-
TfR1 is localized to the plasma membrane as a component of the Reactome
transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct
location for the cell-surface receptor.
action: ACCEPT
reason: >-
Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with
the receptor's primary cell-surface localization. Duplicates other accepted
plasma-membrane annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8868648
review:
summary: >-
TfR1 is localized to the plasma membrane as a component of the Reactome
transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct
location for the cell-surface receptor.
action: ACCEPT
reason: >-
Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with
the receptor's primary cell-surface localization. Duplicates other accepted
plasma-membrane annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8868651
review:
summary: >-
TfR1 is localized to the plasma membrane as a component of the Reactome
transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct
location for the cell-surface receptor.
action: ACCEPT
reason: >-
Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with
the receptor's primary cell-surface localization. Duplicates other accepted
plasma-membrane annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8868661
review:
summary: >-
TfR1 is localized to the plasma membrane as a component of the Reactome
transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct
location for the cell-surface receptor.
action: ACCEPT
reason: >-
Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with
the receptor's primary cell-surface localization. Duplicates other accepted
plasma-membrane annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-917807
review:
summary: >-
TfR1 is localized to the plasma membrane as a component of the Reactome
transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct
location for the cell-surface receptor.
action: ACCEPT
reason: >-
Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with
the receptor's primary cell-surface localization. Duplicates other accepted
plasma-membrane annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-917814
review:
summary: >-
TfR1 is localized to the plasma membrane as a component of the Reactome
transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct
location for the cell-surface receptor.
action: ACCEPT
reason: >-
Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with
the receptor's primary cell-surface localization. Duplicates other accepted
plasma-membrane annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-917839
review:
summary: >-
TfR1 is localized to the plasma membrane as a component of the Reactome
transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct
location for the cell-surface receptor.
action: ACCEPT
reason: >-
Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with
the receptor's primary cell-surface localization. Duplicates other accepted
plasma-membrane annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-917987
review:
summary: >-
TfR1 is localized to the plasma membrane as a component of the Reactome
transferrin endocytosis / iron-uptake reactions. Plasma membrane is the correct
location for the cell-surface receptor.
action: ACCEPT
reason: >-
Authoritative Reactome (TAS) curation of the transferrin cycle; consistent with
the receptor's primary cell-surface localization. Duplicates other accepted
plasma-membrane annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0005886
label: plasma membrane
evidence_type: IDA
original_reference_id: PMID:23137377
review:
summary: >-
Quantitative targeted proteomics of human brain microvascular endothelial cells
detected TfR1 at the plasma membrane, consistent with its cell-surface localization
(and BBB expression).
action: ACCEPT
reason: >-
Core surface localization corroborated by quantitative membrane proteomics.
supported_by:
- reference_id: PMID:23137377
supporting_text: Quantitative targeted absolute proteomic analysis of
transporters, receptors and junction proteins for validation of
human cerebral microvascular endothelial cell line hCMEC/D3 as a
human blood-brain barrier model.
- term:
id: GO:0150104
label: transport across blood-brain barrier
evidence_type: NAS
original_reference_id: PMID:30280653
review:
summary: >-
TfR1 is a leading receptor for transcytosis across the blood-brain barrier and
is widely exploited to shuttle biologics into the CNS, supporting a role in
transport across the blood-brain barrier.
action: KEEP_AS_NON_CORE
reason: >-
A tissue-specific manifestation of receptor-mediated transcytosis rather than
the core iron-uptake function; supported by falcon deep research on RMT/BBB
targeting.
supported_by:
- reference_id: PMID:30280653
supporting_text: 'Blood-Brain Barrier: From Physiology to Disease and Back.'
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is a leading target for **receptor-mediated transcytosis (RMT)** strategies
to shuttle biologics across the BBB
- term:
id: GO:0010637
label: negative regulation of mitochondrial fusion
evidence_type: IMP
original_reference_id: PMID:26214738
review:
summary: >-
TfR1 has a signaling moonlighting function: de-stearoylated TfR1 activates JNK,
leading to HUWE1-dependent mitofusin ubiquitination and reduced mitochondrial fusion
(fragmentation). Stearoylation of TfR1 inhibits this, promoting fusion. TfR1
knockdown blunts fragmentation upon C18:0 removal, supporting a role in negatively
regulating mitochondrial fusion via JNK signaling.
action: KEEP_AS_NON_CORE
reason: >-
A genuine, experimentally supported signaling (moonlighting) function distinct from
and downstream of the core iron-uptake role; retained as non-core.
supported_by:
- reference_id: PMID:26214738
supporting_text: >-
Upon loss of C18:0, TfR1 de-stearoylation activates JNK, leading to
HUWE1-dependent Mfn ubiquitination
- term:
id: GO:0035556
label: intracellular signal transduction
evidence_type: IMP
original_reference_id: PMID:26214738
review:
summary: >-
TfR1 acts in an intracellular signaling pathway whereby its (de)stearoylation status
controls JNK activation, linking the metabolite C18:0 to mitochondrial morphology.
action: KEEP_AS_NON_CORE
reason: >-
Supported signaling function but general and downstream of the core iron-uptake role;
more specifically captured by the negative-regulation-of-mitochondrial-fusion
annotation. Retained as non-core.
supported_by:
- reference_id: PMID:26214738
supporting_text: >-
TfR1 induces mitochondrial fragmentation via JNK, and this is inhibited by TfR1
stearoylation
- term:
id: GO:0150104
label: transport across blood-brain barrier
evidence_type: NAS
original_reference_id: PMID:26590417
review:
summary: >-
TfR1 mediates receptor-mediated transcytosis across the blood-brain barrier and is
widely exploited to shuttle biologics into the CNS.
action: KEEP_AS_NON_CORE
reason: >-
A tissue-specific manifestation of receptor-mediated transcytosis rather than the
core iron-uptake function; duplicates the accepted NAS BBB-transport annotation.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is a leading target for **receptor-mediated transcytosis (RMT)** strategies
to shuttle biologics across the BBB
- term:
id: GO:0010628
label: positive regulation of gene expression
evidence_type: IMP
original_reference_id: PMID:23016877
review:
summary: >-
TfR1 depletion reduces NF-kB-dependent transcription, so TfR1 positively supports
expression of NF-kB target genes by enabling IKK complex formation and NF-kB nuclear
translocation.
action: KEEP_AS_NON_CORE
reason: >-
A genuine signaling/moonlighting role linking cellular iron to NF-kB-driven gene
expression, distinct from and downstream of the core iron-uptake function; retained
as non-core.
supported_by:
- reference_id: PMID:23016877
supporting_text: >-
there is a reduction in the binding to target gene promoters and consequentially
less target gene activation
- term:
id: GO:0043066
label: negative regulation of apoptotic process
evidence_type: IMP
original_reference_id: PMID:23016877
review:
summary: >-
TfR1 depletion increases apoptosis in response to TNFa, an effect rescued by raising
RelA/NF-kB, indicating that TfR1 supports cell survival via NF-kB signaling.
action: KEEP_AS_NON_CORE
reason: >-
A genuine survival-signaling consequence of TfR1's NF-kB role, distinct from the core
iron-uptake function; retained as non-core.
supported_by:
- reference_id: PMID:23016877
supporting_text: >-
depletion of TfR1 results in an increase in apoptosis in response to TNFα
treatment, which is rescued by elevating the levels of RelA/NF-ÎșB
- term:
id: GO:1900182
label: positive regulation of protein localization to nucleus
evidence_type: IMP
original_reference_id: PMID:23016877
review:
summary: >-
In the absence of TfR1, NF-kB fails to translocate efficiently to the nucleus,
indicating TfR1 positively regulates NF-kB nuclear localization.
action: KEEP_AS_NON_CORE
reason: >-
A specific consequence of TfR1's IKK/NF-kB signaling role, distinct from and
downstream of the core iron-uptake function; retained as non-core.
supported_by:
- reference_id: PMID:23016877
supporting_text: >-
in the absence of TfR1, NF-ÎșB does not translocate to the nucleus efficiently
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:23016877
review:
summary: >-
This IPI reflects TfR1 binding the IKK complex (a protein kinase complex). The bare
"protein binding" term is uninformative; the specific informative function is protein
kinase binding / protein-containing complex binding.
action: MODIFY
reason: >-
Avoid endorsing bare protein binding; the interaction is with the IKK kinase complex,
better captured by protein kinase binding.
proposed_replacement_terms:
- id: GO:0019901
label: protein kinase binding
supported_by:
- reference_id: PMID:23016877
supporting_text: >-
We have identified TfR1 (transferrin receptor 1), as a novel IKK-binding partner
- term:
id: GO:0019901
label: protein kinase binding
evidence_type: IPI
original_reference_id: PMID:23016877
review:
summary: >-
TfR1 binds the IKK kinase complex and is required for IKK complex formation/activity,
supporting protein kinase binding.
action: KEEP_AS_NON_CORE
reason: >-
Experimentally supported interaction with the IKK kinases, but a moonlighting
signaling function distinct from the core iron-uptake role; retained as non-core.
supported_by:
- reference_id: PMID:23016877
supporting_text: >-
TfR1 is required for IKK complex activity, without altering IKK subunit levels
- term:
id: GO:0031334
label: positive regulation of protein-containing complex assembly
evidence_type: IMP
original_reference_id: PMID:23016877
review:
summary: >-
TfR1 depletion reduces formation of the IKK complex, indicating TfR1 positively
promotes assembly of this protein-containing complex.
action: KEEP_AS_NON_CORE
reason: >-
A specific moonlighting signaling function (promoting IKK complex assembly), distinct
from the core iron-uptake role; retained as non-core.
supported_by:
- reference_id: PMID:23016877
supporting_text: >-
it does reduce the formation of the IKK
- term:
id: GO:0043123
label: positive regulation of canonical NF-kappaB signal transduction
evidence_type: IMP
original_reference_id: PMID:23016877
review:
summary: >-
TfR1 is required for IKK complex activity and TNFa-induced canonical NF-kB activation;
its depletion inhibits NF-kB-dependent transcription, linking cellular iron status to
canonical NF-kB signaling.
action: KEEP_AS_NON_CORE
reason: >-
A genuine, experimentally supported signaling/moonlighting function distinct from and
downstream of the core iron-uptake role; retained as non-core.
supported_by:
- reference_id: PMID:23016877
supporting_text: >-
these results indicate a new function for TfR1 in the control of IKK and NF-ÎșB
- term:
id: GO:0044877
label: protein-containing complex binding
evidence_type: IPI
original_reference_id: PMID:23016877
review:
summary: >-
TfR1 was identified as a binding partner of the multi-subunit IKK complex, supporting
protein-containing complex binding.
action: KEEP_AS_NON_CORE
reason: >-
Experimentally supported binding to the IKK complex, a moonlighting signaling
interaction distinct from the core iron-uptake role; retained as non-core.
supported_by:
- reference_id: PMID:23016877
supporting_text: >-
We have identified TfR1 (transferrin receptor 1), as a novel IKK-binding partner
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:29388418
review:
summary: >-
This IPI characterizes how full-length TfR1 binds transferrin. The bare "protein
binding" term is uninformative; the specific function is transferrin receptor activity.
action: MODIFY
reason: >-
Avoid endorsing bare protein binding; the study measures ligand (transferrin) binding
by the receptor, best captured by transferrin receptor activity.
proposed_replacement_terms:
- id: GO:0004998
label: transferrin receptor activity
supported_by:
- reference_id: PMID:29388418
supporting_text: >-
Transferrin Receptors TfR1 and TfR2 Bind Transferrin through Differing Mechanisms
- term:
id: GO:0009986
label: cell surface
evidence_type: ISS
original_reference_id: PMID:18619525
review:
summary: >-
In vivo biotinylation localized TfR1 to the cell surface (luminal membrane) of
blood-brain barrier endothelium, consistent with its established surface localization.
action: ACCEPT
reason: >-
Cell-surface localization is the defining location of the receptor and is supported by
multiple independent annotations; the ISS here adds BBB-endothelium surface evidence.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0030669
label: clathrin-coated endocytic vesicle membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8868658
review:
summary: >-
During clathrin-mediated internalization of the transferrin-TfR1 complex, TfR1
resides in the membrane of clathrin-coated endocytic vesicles. This Reactome (TAS)
annotation captures a step of the iron-uptake cycle.
action: ACCEPT
reason: >-
Authoritative Reactome curation of clathrin-coated vesicle trafficking; consistent
with the canonical TfR1 endocytic pathway.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic
endosomes, and recycles apo-transferrin/TfR1 to the surface
- term:
id: GO:0030669
label: clathrin-coated endocytic vesicle membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8868659
review:
summary: >-
During clathrin-mediated internalization of the transferrin-TfR1 complex, TfR1
resides in the membrane of clathrin-coated endocytic vesicles. This Reactome (TAS)
annotation captures a step of the iron-uptake cycle.
action: ACCEPT
reason: >-
Authoritative Reactome curation of clathrin-coated vesicle trafficking; consistent
with the canonical TfR1 endocytic pathway.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic
endosomes, and recycles apo-transferrin/TfR1 to the surface
- term:
id: GO:0030669
label: clathrin-coated endocytic vesicle membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8868660
review:
summary: >-
During clathrin-mediated internalization of the transferrin-TfR1 complex, TfR1
resides in the membrane of clathrin-coated endocytic vesicles. This Reactome (TAS)
annotation captures a step of the iron-uptake cycle.
action: ACCEPT
reason: >-
Authoritative Reactome curation of clathrin-coated vesicle trafficking; consistent
with the canonical TfR1 endocytic pathway.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic
endosomes, and recycles apo-transferrin/TfR1 to the surface
- term:
id: GO:0030669
label: clathrin-coated endocytic vesicle membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8868661
review:
summary: >-
During clathrin-mediated internalization of the transferrin-TfR1 complex, TfR1
resides in the membrane of clathrin-coated endocytic vesicles. This Reactome (TAS)
annotation captures a step of the iron-uptake cycle.
action: ACCEPT
reason: >-
Authoritative Reactome curation of clathrin-coated vesicle trafficking; consistent
with the canonical TfR1 endocytic pathway.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic
endosomes, and recycles apo-transferrin/TfR1 to the surface
- term:
id: GO:0030669
label: clathrin-coated endocytic vesicle membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8869438
review:
summary: >-
During clathrin-mediated internalization of the transferrin-TfR1 complex, TfR1
resides in the membrane of clathrin-coated endocytic vesicles. This Reactome (TAS)
annotation captures a step of the iron-uptake cycle.
action: ACCEPT
reason: >-
Authoritative Reactome curation of clathrin-coated vesicle trafficking; consistent
with the canonical TfR1 endocytic pathway.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic
endosomes, and recycles apo-transferrin/TfR1 to the surface
- term:
id: GO:0030669
label: clathrin-coated endocytic vesicle membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8871193
review:
summary: >-
During clathrin-mediated internalization of the transferrin-TfR1 complex, TfR1
resides in the membrane of clathrin-coated endocytic vesicles. This Reactome (TAS)
annotation captures a step of the iron-uptake cycle.
action: ACCEPT
reason: >-
Authoritative Reactome curation of clathrin-coated vesicle trafficking; consistent
with the canonical TfR1 endocytic pathway.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic
endosomes, and recycles apo-transferrin/TfR1 to the surface
- term:
id: GO:0030669
label: clathrin-coated endocytic vesicle membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8871194
review:
summary: >-
During clathrin-mediated internalization of the transferrin-TfR1 complex, TfR1
resides in the membrane of clathrin-coated endocytic vesicles. This Reactome (TAS)
annotation captures a step of the iron-uptake cycle.
action: ACCEPT
reason: >-
Authoritative Reactome curation of clathrin-coated vesicle trafficking; consistent
with the canonical TfR1 endocytic pathway.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic
endosomes, and recycles apo-transferrin/TfR1 to the surface
- term:
id: GO:0010008
label: endosome membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-917807
review:
summary: >-
As an integral membrane protein, TfR1 is present in the endosome membrane during
the transferrin cycle, where iron is released at acidic pH before receptor
recycling. This Reactome (TAS) annotation captures the endosomal step.
action: ACCEPT
reason: >-
Authoritative Reactome curation of the transferrin endosomal cycle; consistent with
the receptor's endosomal trafficking.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: 'acidic endosomes (pH †5.5)'
- term:
id: GO:0010008
label: endosome membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-917814
review:
summary: >-
As an integral membrane protein, TfR1 is present in the endosome membrane during
the transferrin cycle, where iron is released at acidic pH before receptor
recycling. This Reactome (TAS) annotation captures the endosomal step.
action: ACCEPT
reason: >-
Authoritative Reactome curation of the transferrin endosomal cycle; consistent with
the receptor's endosomal trafficking.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: 'acidic endosomes (pH †5.5)'
- term:
id: GO:0010008
label: endosome membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-917835
review:
summary: >-
As an integral membrane protein, TfR1 is present in the endosome membrane during
the transferrin cycle, where iron is released at acidic pH before receptor
recycling. This Reactome (TAS) annotation captures the endosomal step.
action: ACCEPT
reason: >-
Authoritative Reactome curation of the transferrin endosomal cycle; consistent with
the receptor's endosomal trafficking.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: 'acidic endosomes (pH †5.5)'
- term:
id: GO:0010008
label: endosome membrane
evidence_type: IDA
original_reference_id: PMID:16380373
review:
summary: >-
TfR1 was used as an endosomal marker and co-localized with endosomal structures in
this study, consistent with its endosome-membrane localization during the transferrin
cycle.
action: ACCEPT
reason: >-
Endosome-membrane localization is a core part of the TfR1 trafficking cycle and is
supported by multiple annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: 'acidic endosomes (pH †5.5)'
- term:
id: GO:0048471
label: perinuclear region of cytoplasm
evidence_type: IDA
original_reference_id: PMID:16380373
review:
summary: >-
TfR1-positive recycling endosomes concentrate in the perinuclear endocytic recycling
compartment, where TfR1 was localized in this study.
action: ACCEPT
reason: >-
The perinuclear endocytic recycling compartment is a canonical TfR1 localization;
supported by direct co-localization.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic
endosomes, and recycles apo-transferrin/TfR1 to the surface
- term:
id: GO:0031410
label: cytoplasmic vesicle
evidence_type: IDA
original_reference_id: PMID:15229288
review:
summary: >-
TfR1 was tracked through cytoplasmic (recycling) vesicles in studies of the endocytic
recycling compartment, consistent with its presence in cytoplasmic vesicles during
the transferrin cycle.
action: ACCEPT
reason: >-
Cytoplasmic (endocytic/recycling) vesicle localization is a core part of the TfR1
trafficking cycle.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic
endosomes, and recycles apo-transferrin/TfR1 to the surface
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:26642240
review:
summary: >-
This IPI from the combined-immunodeficiency study reflects TfR1 interactions; the
bare "protein binding" term is uninformative. The biologically meaningful findings
(receptor internalization, transferrin transport, immune proliferation) are captured
by dedicated process annotations from the same paper.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Avoid endorsing bare protein binding; the informative functions are annotated
separately and this generic binding term adds nothing.
supported_by:
- reference_id: PMID:26642240
supporting_text: A missense mutation in TFRC, encoding transferrin
receptor 1, causes combined immunodeficiency.
- term:
id: GO:0030890
label: positive regulation of B cell proliferation
evidence_type: IDA
original_reference_id: PMID:26642240
review:
summary: >-
TfR1-mediated iron uptake is required for B-cell proliferation; the
internalization-defective TFRC variant impairs B-cell proliferation in patients,
contributing to combined immunodeficiency.
action: KEEP_AS_NON_CORE
reason: >-
A genuine, evidence-supported physiological consequence of the core iron-uptake
function rather than a distinct molecular activity; retained as non-core.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
defective T- and B-cell proliferation, increased activation-induced apoptosis
- term:
id: GO:0042102
label: positive regulation of T cell proliferation
evidence_type: IDA
original_reference_id: PMID:26642240
review:
summary: >-
TfR1-mediated iron uptake is required to supply iron for lymphocyte proliferation
and mitochondrial metabolism; loss-of-internalization variants impair T-cell
proliferation, identifying TfR1 as a non-redundant immune-metabolic checkpoint.
action: KEEP_AS_NON_CORE
reason: >-
A genuine, evidence-supported physiological consequence of the core iron-uptake
function rather than a distinct molecular activity; corroborated by falcon deep
research on the iron-immunity axis, but downstream of the core receptor function.
supported_by:
- reference_id: PMID:26642240
supporting_text: A missense mutation in TFRC, encoding transferrin
receptor 1, causes combined immunodeficiency.
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 internalization is needed to supply iron for proliferation and
mitochondrial metabolism
- term:
id: GO:0045830
label: positive regulation of isotype switching
evidence_type: IDA
original_reference_id: PMID:26642240
review:
summary: >-
Patients with the internalization-defective TFRC variant show defective
immunoglobulin class-switching, a downstream immune consequence of impaired
TfR1-dependent iron supply to proliferating B cells.
action: KEEP_AS_NON_CORE
reason: >-
A downstream immune phenotype secondary to the core iron-uptake function rather than
a distinct molecular activity; retained as non-core.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
defective T- and B-cell proliferation, increased activation-induced apoptosis
- term:
id: GO:0031623
label: receptor internalization
evidence_type: IDA
original_reference_id: PMID:26642240
review:
summary: >-
TfR1 internalization depends on the cytoplasmic tyrosine-based YTRF motif;
pathogenic variants (e.g. p.Y20H, p.R22W) cause an internalization defect with
increased steady-state surface TfR1, demonstrating the receptor's role in its
own internalization.
action: ACCEPT
reason: >-
Directly supported by disease genetics (PMID:26642240) and corroborated by
falcon deep research on YTRF-dependent internalization defects.
supported_by:
- reference_id: PMID:26642240
supporting_text: A missense mutation in TFRC, encoding transferrin
receptor 1, causes combined immunodeficiency.
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
the cytoplasmic YTRF motif explaining trafficking-sensitive pathogenic variants
- term:
id: GO:0033572
label: transferrin transport
evidence_type: IDA
original_reference_id: PMID:26642240
review:
summary: >-
The internalization-defective TFRC variant impairs transferrin uptake/transport,
consistent with TfR1's core transferrin transport function.
action: ACCEPT
reason: >-
Core process directly supported by the disease-variant functional analysis.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
increase surface TfR1, impair iron uptake, and cause combined immunodeficiency
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:9990067
review:
summary: >-
This IPI reflects the physical association of TfR1 with the HFE protein in crypt
enterocytes. The bare "protein binding" term is uninformative; the specific complex is
the HFE-transferrin receptor complex.
action: MODIFY
reason: >-
Avoid endorsing bare protein binding; the documented HFE-TfR1 association is better
captured by the HFE-transferrin receptor complex term.
proposed_replacement_terms:
- id: GO:1990712
label: HFE-transferrin receptor complex
supported_by:
- reference_id: PMID:9990067
supporting_text: >-
the HFE protein in crypt enterocytes is physically associated with the TfR and
with beta2-microglobulin
- term:
id: GO:0016323
label: basolateral plasma membrane
evidence_type: IDA
original_reference_id: PMID:9990067
review:
summary: >-
In polarized duodenal crypt enterocytes, TfR1 (with HFE) localizes to the basolateral
membrane, where it takes up transferrin-bound iron from the circulation.
action: KEEP_AS_NON_CORE
reason: >-
A polarized-epithelium-specific localization of the plasma-membrane receptor; genuine
but tissue-specific, retained as non-core.
supported_by:
- reference_id: PMID:9990067
supporting_text: >-
The crypt cell fraction exhibited dramatically higher transferrin-bound iron
uptake than villus cells
- term:
id: GO:1990712
label: HFE-transferrin receptor complex
evidence_type: IDA
original_reference_id: PMID:9990067
review:
summary: >-
TfR1 forms a stable physical complex with the HFE protein (and beta2-microglobulin) in
duodenal crypt enterocytes, directly demonstrated by co-localization and co-precipitation.
action: ACCEPT
reason: >-
Direct evidence for the HFE-transferrin receptor complex in a physiological tissue.
supported_by:
- reference_id: PMID:9990067
supporting_text: >-
the HFE protein in crypt enterocytes is physically associated with the TfR and
with beta2-microglobulin
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:18353247
review:
summary: >-
This IPI relates to HFE/TfR interactions in the iron-sensing system. The bare
"protein binding" term is uninformative; the relevant complex is the
HFE-transferrin receptor complex.
action: MODIFY
reason: >-
Avoid endorsing bare protein binding; the documented interaction concerns HFE,
better captured by the HFE-transferrin receptor complex term.
proposed_replacement_terms:
- id: GO:1990712
label: HFE-transferrin receptor complex
supported_by:
- reference_id: PMID:18353247
supporting_text: >-
HFE and TfR2 were recently discovered to form a stable complex at the cell
membrane when co-expressed in heterologous cell lines
- term:
id: GO:0005886
label: plasma membrane
evidence_type: IGI
original_reference_id: PMID:18353247
review:
summary: >-
Functional/genetic-interaction studies of HFE and the transferrin receptors place
TfR1 at the plasma membrane where the iron-uptake complex forms.
action: ACCEPT
reason: >-
Consistent with the receptor's defining plasma-membrane localization; duplicates other
accepted plasma-membrane annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0009897
label: external side of plasma membrane
evidence_type: IGI
original_reference_id: PMID:18353247
review:
summary: >-
The transferrin-binding ectodomain of TfR1 faces the extracellular space at the cell
surface, consistent with localization to the external side of the plasma membrane.
action: ACCEPT
reason: >-
Consistent with UniProt topology and the receptor's surface ligand-binding role;
duplicates other accepted external-side annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:9546397
review:
summary: >-
This IPI reflects the structurally characterized TfR1-HFE interaction. The bare
"protein binding" term is uninformative; the specific complex is the
HFE-transferrin receptor complex.
action: MODIFY
reason: >-
Avoid endorsing bare protein binding; the interaction is with HFE, best captured by
the HFE-transferrin receptor complex term.
proposed_replacement_terms:
- id: GO:1990712
label: HFE-transferrin receptor complex
supported_by:
- reference_id: PMID:9546397
supporting_text: >-
HFE binds to transferrin receptor (TfR) and reduces its affinity for iron-loaded
transferrin
- term:
id: GO:0042803
label: protein homodimerization activity
evidence_type: IPI
original_reference_id: PMID:9546397
review:
summary: >-
TfR1 functions as a disulfide-linked homodimer of ~90 kDa subunits, so
homodimerization is integral to its receptor architecture and ligand binding.
action: ACCEPT
reason: >-
The receptor is a well-characterized homodimer; falcon deep research describes
it as a homodimeric transmembrane glycoprotein.
supported_by:
- reference_id: PMID:9546397
supporting_text: Crystal structure of the hemochromatosis protein HFE
and characterization of its interaction with transferrin receptor.
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: homodimeric transmembrane glycoprotein
- term:
id: GO:1990712
label: HFE-transferrin receptor complex
evidence_type: IDA
original_reference_id: PMID:9546397
review:
summary: >-
The crystal structure and binding studies demonstrate that HFE binds TfR1 at a 2:1
(TfR:HFE) stoichiometry and that HFE, transferrin, and TfR form a ternary complex.
action: ACCEPT
reason: >-
Definitive structural/biochemical evidence for the HFE-transferrin receptor complex.
supported_by:
- reference_id: PMID:9546397
supporting_text: >-
TfR:HFE stoichiometry (2:1) differs from TfR:transferrin stoichiometry (2:2)
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:9465039
review:
summary: >-
This IPI reflects the TfR1-HFE interaction. The bare "protein binding" term is
uninformative; the specific complex is the HFE-transferrin receptor complex.
action: MODIFY
reason: >-
Avoid endorsing bare protein binding; the documented interaction is with HFE, best
captured by the HFE-transferrin receptor complex term.
proposed_replacement_terms:
- id: GO:1990712
label: HFE-transferrin receptor complex
supported_by:
- reference_id: PMID:9465039
supporting_text: >-
both the wild-type and H63D HFE proteins form stable complexes with the
transferrin receptor (TfR)
- term:
id: GO:1990712
label: HFE-transferrin receptor complex
evidence_type: IDA
original_reference_id: PMID:9465039
review:
summary: >-
Wild-type and H63D HFE proteins form stable complexes with TfR1 in cells, directly
demonstrating the HFE-transferrin receptor complex.
action: ACCEPT
reason: >-
Direct cell-based evidence for the HFE-transferrin receptor complex.
supported_by:
- reference_id: PMID:9465039
supporting_text: >-
both the wild-type and H63D HFE proteins form stable complexes with the
transferrin receptor (TfR)
- term:
id: GO:1903561
label: extracellular vesicle
evidence_type: HDA
original_reference_id: PMID:24769233
review:
summary: >-
TfR1 was detected in cerebrospinal-fluid extracellular vesicles by high-throughput
proteomics, consistent with its known sorting into exosomes/EVs.
action: KEEP_AS_NON_CORE
reason: >-
Genuine but secondary localization reflecting exosomal/EV sorting of TfR1; not the core
membrane-receptor function. Retained as non-core.
supported_by:
- reference_id: PMID:24769233
supporting_text: >-
Proteomic analysis of cerebrospinal fluid extracellular vesicles: a comprehensive
dataset
- term:
id: GO:0071466
label: cellular response to xenobiotic stimulus
evidence_type: IDA
original_reference_id: PMID:16254249
review:
summary: >-
In this study, TfR1 served as a marker of clathrin-dependent endocytosis while
examining copper-stimulated internalization of the prion protein. The assignment of
"cellular response to xenobiotic stimulus" to TfR1 is not supported by the paper, which
concerns prion-protein endocytosis rather than a TfR1 xenobiotic response.
action: REMOVE
reason: >-
The cited paper uses TfR1 only as an endocytic control/marker and provides no evidence
that TfR1 mediates a cellular response to a xenobiotic; this is an erroneous
over-annotation.
supported_by:
- reference_id: PMID:16254249
supporting_text: >-
its copper-stimulated, clathrin-dependent endocytosis
- term:
id: GO:0055037
label: recycling endosome
evidence_type: IDA
original_reference_id: PMID:24561039
review:
summary: >-
TfR1 is the canonical marker of Rab11-positive recycling endosomes and was used as
such in this study, consistent with its recycling-endosome localization.
action: ACCEPT
reason: >-
Recycling-endosome localization is core to the TfR1 transferrin cycle and is supported
by multiple annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic
endosomes, and recycles apo-transferrin/TfR1 to the surface
- term:
id: GO:0055037
label: recycling endosome
evidence_type: IDA
original_reference_id: PMID:22456507
review:
summary: >-
TfR1 was used as a recycling-endosome marker in this autophagy study, consistent with
its established recycling-endosome localization.
action: ACCEPT
reason: >-
Recycling-endosome localization is core to the TfR1 transferrin cycle; supported by
multiple annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic
endosomes, and recycles apo-transferrin/TfR1 to the surface
- term:
id: GO:0001558
label: regulation of cell growth
evidence_type: IMP
original_reference_id: PMID:7556058
negated: true
review:
summary: >-
This NOT annotation derives from a study primarily on the GPI-anchored transferrin
homolog p97/melanotransferrin, using TfR-deficient CHO cells transfected with human
TfR. The negated regulation-of-cell-growth annotation indicates TfR1 was not shown to
regulate cell growth in this system.
action: ACCEPT
reason: >-
A NOT annotation reflecting absence of a cell-growth-regulation role for TfR1 in this
experimental context; consistent with TfR1 being an iron-uptake receptor rather than a
direct growth regulator. Retained as a documented negative annotation.
supported_by:
- reference_id: PMID:7556058
supporting_text: >-
A novel iron uptake mechanism mediated by GPI-anchored human p97
- term:
id: GO:0006826
label: iron ion transport
evidence_type: IDA
original_reference_id: PMID:7556058
review:
summary: >-
In this study, transferrin-receptor-mediated iron uptake served as the canonical
comparator to the novel p97/melanotransferrin pathway, consistent with TfR1's core
iron-transport function.
action: ACCEPT
reason: >-
Iron ion transport is the receptor's core process; here TfR-mediated iron uptake was
directly assayed in transfected cells. Duplicates the accepted IBA iron ion transport
annotation.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0009986
label: cell surface
evidence_type: IDA
original_reference_id: PMID:7556058
review:
summary: >-
TfR was expressed at the cell surface of transfected CHO cells in this iron-uptake
study, consistent with its established surface localization.
action: ACCEPT
reason: >-
Cell-surface localization is the defining location of the receptor; duplicates other
accepted cell-surface annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
- term:
id: GO:0042127
label: regulation of cell population proliferation
evidence_type: IMP
original_reference_id: PMID:7556058
negated: true
review:
summary: >-
This NOT annotation derives from the p97/melanotransferrin iron-uptake study using
TfR-transfected CHO cells, indicating TfR1 was not shown to regulate cell proliferation
in this experimental system.
action: ACCEPT
reason: >-
A NOT annotation documenting absence of a direct proliferation-regulation role for TfR1
in this context; consistent with TfR1 functioning as an iron-uptake receptor. Retained
as a documented negative annotation.
supported_by:
- reference_id: PMID:7556058
supporting_text: >-
A novel iron uptake mechanism mediated by GPI-anchored human p97
- term:
id: GO:0003723
label: RNA binding
evidence_type: HDA
original_reference_id: PMID:22658674
review:
summary: >-
TfR1 was flagged as a putative mRNA-binding protein in a proteome-wide UV-crosslinking
"interactome capture" screen. TfR1 is a type II transmembrane iron-uptake receptor with
no known sequence-specific RNA-binding domain, so this is most plausibly an incidental
high-throughput hit.
action: MARK_AS_OVER_ANNOTATED
reason: >-
High-throughput RBP-atlas hit lacking corroborating mechanistic evidence or an RNA-binding
domain; likely a screening artifact and not a core function.
supported_by:
- reference_id: PMID:22658674
supporting_text: >-
Insights into RNA biology from an atlas of mammalian mRNA-binding proteins
- term:
id: GO:0072562
label: blood microparticle
evidence_type: HDA
original_reference_id: PMID:22516433
review:
summary: >-
TfR1 was detected by proteomics in plasma microvesicles/microparticles, consistent with
its shedding into circulating vesicles (and as the soluble sTfR).
action: KEEP_AS_NON_CORE
reason: >-
Secondary localization reflecting vesicular/soluble release of TfR1 into blood; not the
core membrane-receptor function. Retained as non-core.
supported_by:
- reference_id: PMID:22516433
supporting_text: >-
Proteomic analysis of microvesicles from plasma of healthy donors reveals high
individual variability
- term:
id: GO:0005615
label: extracellular space
evidence_type: HDA
original_reference_id: PMID:22664934
review:
summary: >-
TfR1 was detected in tear-fluid proteomics, consistent with the presence of the shed
soluble receptor (sTfR) in extracellular/body fluids.
action: KEEP_AS_NON_CORE
reason: >-
Reflects the shed soluble ectodomain in extracellular fluid rather than the core
membrane-receptor function; retained as non-core.
supported_by:
- reference_id: PMID:1871153
supporting_text: Characterization of transferrin receptor released by
K562 erythroleukemia cells.
- term:
id: GO:0003725
label: double-stranded RNA binding
evidence_type: IDA
original_reference_id: PMID:21266579
review:
summary: >-
This annotation derives from a study of poly(I:C) (dsRNA mimic) uptake, where TfR1 was
implicated in the "nucleocapture" complex that internalizes extracellular dsRNA for TLR3
activation. Any dsRNA association is in the context of receptor-mediated uptake rather
than a sequence-specific dsRNA-binding molecular function.
action: MARK_AS_OVER_ANNOTATED
reason: >-
TfR1 lacks a recognized dsRNA-binding domain; its reported involvement is in
receptor-mediated uptake of extracellular nucleic acids, so the bare dsRNA-binding MF
term over-interprets the data.
supported_by:
- reference_id: PMID:21266579
supporting_text: >-
Raftlin is involved in the nucleocapture complex to induce poly(I:C)-mediated TLR3
activation
- term:
id: GO:0070062
label: extracellular exosome
evidence_type: HDA
original_reference_id: PMID:20458337
review:
summary: >-
TfR1 was detected by proteomics in B-cell exosomes, consistent with its well-documented
sorting into exosomes (a hallmark of reticulocyte maturation).
action: KEEP_AS_NON_CORE
reason: >-
Secondary localization reflecting exosomal sorting of TfR1; not the core membrane-receptor
function. Retained as non-core.
supported_by:
- reference_id: PMID:20458337
supporting_text: >-
MHC class II-associated proteins in B-cell exosomes and potential functional
implications for exosome biogenesis
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:10638746
review:
summary: >-
This IPI reflects the co-crystal structure of HFE complexed with TfR1. The bare
"protein binding" term is uninformative; the specific complex is the HFE-transferrin
receptor complex.
action: MODIFY
reason: >-
Avoid endorsing bare protein binding; the structurally resolved interaction is with
HFE, best captured by the HFE-transferrin receptor complex term.
proposed_replacement_terms:
- id: GO:1990712
label: HFE-transferrin receptor complex
supported_by:
- reference_id: PMID:10638746
supporting_text: >-
Crystal structure of the hereditary haemochromatosis protein HFE complexed with
transferrin receptor
- term:
id: GO:0048471
label: perinuclear region of cytoplasm
evidence_type: IDA
original_reference_id: PMID:20202662
review:
summary: >-
TfR1 was used as a marker of the perinuclear endocytic recycling compartment in this
Ebola entry study, consistent with its established perinuclear recycling-endosome
localization.
action: ACCEPT
reason: >-
The perinuclear endocytic recycling compartment is a canonical TfR1 localization;
supported by multiple annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic
endosomes, and recycles apo-transferrin/TfR1 to the surface
- term:
id: GO:0005905
label: clathrin-coated pit
evidence_type: IDA
original_reference_id: PMID:12857860
review:
summary: >-
TfR1 was localized to clathrin-coated pits / newly uncoated endocytic vesicles in this
Myo6 study, consistent with its concentration in coated pits as endocytic cargo.
action: ACCEPT
reason: >-
Clathrin-coated-pit localization is the entry point of the TfR1 endocytic cycle;
supported by multiple annotations.
supported_by:
- reference_id: PMID:12857860
supporting_text: >-
myo6 was associated with peripherally located vesicles that contained the transferrin
receptor
- term:
id: GO:0005768
label: endosome
evidence_type: IDA
original_reference_id: PMID:14612438
review:
summary: >-
TfR1 was used as an endosomal marker in this ZIP4 endocytosis study, consistent with its
endosomal localization during the transferrin cycle.
action: ACCEPT
reason: >-
Endosomal localization is core to the TfR1 trafficking cycle; supported by multiple
annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: 'acidic endosomes (pH †5.5)'
- term:
id: GO:0004998
label: transferrin receptor activity
evidence_type: TAS
original_reference_id: PMID:10192390
review:
summary: >-
TfR1-knockout mice die in utero with severe anemia and neurological defects,
demonstrating that the receptor's transferrin-binding/iron-delivery activity is
essential. The transferrin cycle is the general mechanism for cellular iron uptake.
action: ACCEPT
reason: >-
Defining molecular function with strong in vivo genetic support; duplicates accepted
transferrin receptor activity annotations.
supported_by:
- reference_id: PMID:10192390
supporting_text: >-
Diferric Trf interacts with cell-surface Trf receptor (Trfr) to undergo
receptor-mediated endocytosis into specialized endosomes
- term:
id: GO:0005768
label: endosome
evidence_type: TAS
original_reference_id: PMID:8394993
review:
summary: >-
Transferrin endocytosis traffics TfR1 through endosomal compartments, as studied here
via transferrin internalization/externalization, consistent with TfR1's endosomal
localization.
action: ACCEPT
reason: >-
Endosomal localization is core to the TfR1 transferrin cycle; supported by multiple
annotations.
supported_by:
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: 'acidic endosomes (pH †5.5)'
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: PMID:6090955
review:
summary: >-
The original cloning/primary-structure paper established TfR1 as a type II
transmembrane plasma-membrane glycoprotein.
action: ACCEPT
reason: >-
Foundational characterization of the receptor's plasma-membrane localization;
duplicates other accepted plasma-membrane annotations.
supported_by:
- reference_id: PMID:6090955
supporting_text: >-
Primary structure of human transferrin receptor deduced from the mRNA sequence
- term:
id: GO:0006879
label: intracellular iron ion homeostasis
evidence_type: TAS
original_reference_id: PMID:10192390
review:
summary: >-
By controlling the rate of transferrin-bound iron import, TfR1 is central to cellular
iron homeostasis; its loss in mice causes severe anemia, underscoring this role.
action: ACCEPT
reason: >-
Core process supported by in vivo genetics; duplicates accepted intracellular iron
homeostasis annotations.
supported_by:
- reference_id: PMID:10192390
supporting_text: >-
Transferrin receptor is necessary for development of erythrocytes and the nervous
system
- term:
id: GO:0004998
label: transferrin receptor activity
evidence_type: NAS
original_reference_id: PMID:1871153
review:
summary: >-
This study characterized the released (soluble) transferrin receptor, attributing
transferrin-binding (receptor) activity to TfR1.
action: ACCEPT
reason: >-
Defining molecular function; duplicates accepted transferrin receptor activity
annotations.
supported_by:
- reference_id: PMID:1871153
supporting_text: Characterization of transferrin receptor released by
K562 erythroleukemia cells.
- term:
id: GO:0005576
label: extracellular region
evidence_type: IDA
original_reference_id: PMID:1871153
review:
summary: >-
A proteolytically cleaved/shed soluble form of the transferrin receptor (sTfR)
circulates in the extracellular compartment and serves as a clinical biomarker
of iron demand and erythropoiesis.
action: KEEP_AS_NON_CORE
reason: >-
Reflects the shed soluble ectodomain rather than the membrane receptor's core
function; supported by falcon deep research describing sTfR generation by
proteolytic shedding.
supported_by:
- reference_id: PMID:1871153
supporting_text: Characterization of transferrin receptor released by
K562 erythroleukemia cells.
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
generated by **proteolytic cleavage/shedding** of membrane TfR; it rises in
**iron deficiency** and with **expanded erythropoiesis**
- term:
id: GO:0006879
label: intracellular iron ion homeostasis
evidence_type: NAS
original_reference_id: PMID:1871153
review:
summary: >-
The soluble transferrin receptor (sTfR) reflects cellular iron demand, linking TfR1 to
intracellular iron homeostasis.
action: ACCEPT
reason: >-
Core process; duplicates accepted intracellular iron homeostasis annotations.
supported_by:
- reference_id: PMID:1871153
supporting_text: Characterization of transferrin receptor released by
K562 erythroleukemia cells.
- term:
id: GO:0016020
label: membrane
evidence_type: NAS
original_reference_id: PMID:1871153
review:
summary: >-
TfR1 is an integral membrane protein; "membrane" is a correct but very general location
subsumed by the more specific plasma-membrane annotations.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Uninformatively broad cellular-component term; more specific membrane locations are
annotated.
supported_by:
- reference_id: PMID:1871153
supporting_text: Characterization of transferrin receptor released by
K562 erythroleukemia cells.
references:
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000043
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword
mapping
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular
Location vocabulary mapping, accompanied by conservative changes to GO
terms applied by UniProt.
findings: []
- id: GO_REF:0000052
title: Gene Ontology annotation based on curation of immunofluorescence data
findings: []
- id: GO_REF:0000107
title: Automatic transfer of experimentally verified manual GO annotation
data to orthologs using Ensembl Compara.
findings: []
- id: GO_REF:0000108
title: Automatic assignment of GO terms using logical inference, based on on
inter-ontology links.
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning
models
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods.
findings: []
- id: PMID:10192390
title: Transferrin receptor is necessary for development of erythrocytes and
the nervous system.
findings: []
- id: PMID:10638746
title: Crystal structure of the hereditary haemochromatosis protein HFE
complexed with transferrin receptor.
findings: []
- id: PMID:12857860
title: Myo6 facilitates the translocation of endocytic vesicles from cell
peripheries.
findings: []
- id: PMID:14612438
title: Zn2+-stimulated endocytosis of the mZIP4 zinc transporter regulates
its location at the plasma membrane.
findings: []
- id: PMID:14691533
title: Mechanism for multiple ligand recognition by the human transferrin
receptor.
findings: []
- id: PMID:15229288
title: Over-expression of Rififylin, a new RING finger and FYVE-like
domain-containing protein, inhibits recycling from the endocytic recycling
compartment.
findings: []
- id: PMID:15965644
title: The Q283P amino-acid change in HFE leads to structural and functional
consequences similar to those described for the mutated 282Y HFE protein.
findings: []
- id: PMID:16254249
title: Assigning functions to distinct regions of the N-terminus of the
prion protein that are involved in its copper-stimulated,
clathrin-dependent endocytosis.
findings: []
- id: PMID:16271884
title: The molecular mechanism for receptor-stimulated iron release from the
plasma iron transport protein transferrin.
findings: []
- id: PMID:16325581
title: TTP specifically regulates the internalization of the transferrin
receptor.
findings: []
- id: PMID:16354665
title: Release of the soluble transferrin receptor is directly regulated by
binding of its ligand ferritransferrin.
findings: []
- id: PMID:16380373
title: Sec14 homology domain targets p50RhoGAP to endosomes and provides a
link between Rab and Rho GTPases.
findings: []
- id: PMID:18353247
title: HFE association with transferrin receptor 2 increases cellular uptake
of transferrin-bound iron.
findings: []
- id: PMID:18619525
title: Subcellular localization of transporters along the rat blood-brain
barrier and blood-cerebral-spinal fluid barrier by in vivo biotinylation.
findings: []
- id: PMID:1871153
title: Characterization of transferrin receptor released by K562
erythroleukemia cells.
findings: []
- id: PMID:20133674
title: Binding and uptake of H-ferritin are mediated by human transferrin
receptor-1.
findings: []
- id: PMID:20202662
title: Ebola virus uses clathrin-mediated endocytosis as an entry pathway.
findings: []
- id: PMID:20208545
title: Structural basis for receptor recognition by New World hemorrhagic
fever arenaviruses.
findings: []
- id: PMID:20404192
title: Noncanonical interactions between serum transferrin and transferrin
receptor evaluated with electrospray ionization mass spectrometry.
findings: []
- id: PMID:20458337
title: MHC class II-associated proteins in B-cell exosomes and potential
functional implications for exosome biogenesis.
findings: []
- id: PMID:20618438
title: N-glycosylation is important for the correct intracellular
localization of HFE and its ability to decrease cell surface transferrin
binding.
findings: []
- id: PMID:21266579
title: Raftlin is involved in the nucleocapture complex to induce
poly(I:C)-mediated TLR3 activation.
findings: []
- id: PMID:21788477
title: How the binding of human transferrin primes the transferrin receptor
potentiating iron release at endosomal pH.
findings: []
- id: PMID:22456507
title: Dynamic and transient interactions of Atg9 with autophagosomes, but
not membrane integration, are required for autophagy.
findings: []
- id: PMID:22516433
title: Proteomic analysis of microvesicles from plasma of healthy donors
reveals high individual variability.
findings: []
- id: PMID:22658674
title: Insights into RNA biology from an atlas of mammalian mRNA-binding
proteins.
findings: []
- id: PMID:22664934
title: Comparison of tear protein levels in breast cancer patients and
healthy controls using a de novo proteomic approach.
findings: []
- id: PMID:23016877
title: "TfR1 interacts with the IKK complex and is involved in IKK-NF-ÎșB signalling."
findings: []
- id: PMID:23137377
title: Quantitative targeted absolute proteomic analysis of transporters,
receptors and junction proteins for validation of human cerebral
microvascular endothelial cell line hCMEC/D3 as a human blood-brain
barrier model.
findings: []
- id: PMID:23384347
title: The transferrin receptor-1 membrane stub undergoes intramembrane
proteolysis by signal peptide peptidase-like 2b.
findings: []
- id: PMID:24561039
title: Rab11 endosomes contribute to mitotic spindle organization and
orientation.
findings: []
- id: PMID:24769233
title: 'Proteomic analysis of cerebrospinal fluid extracellular vesicles: a comprehensive
dataset.'
findings: []
- id: PMID:25416956
title: A proteome-scale map of the human interactome network.
findings: []
- id: PMID:26214738
title: Regulation of mitochondrial morphology and function by stearoylation
of TFR1.
findings: []
- id: PMID:26590417
title: Establishment and Dysfunction of the Blood-Brain Barrier.
findings: []
- id: PMID:26642240
title: A missense mutation in TFRC, encoding transferrin receptor 1, causes
combined immunodeficiency.
findings: []
- id: PMID:29302006
title: Transferrin receptor 1 is a reticulocyte-specific receptor for
Plasmodium vivax.
findings: []
- id: PMID:29388418
title: Transferrin Receptors TfR1 and TfR2 Bind Transferrin through
Differing Mechanisms.
findings: []
- id: PMID:29950717
title: Cryo-EM structure of an essential Plasmodium vivax invasion complex.
findings: []
- id: PMID:30280653
title: 'Blood-Brain Barrier: From Physiology to Disease and Back.'
findings: []
- id: PMID:32296183
title: A reference map of the human binary protein interactome.
findings: []
- id: PMID:38625739
title: The secreted micropeptide C4orf48 enhances renal fibrosis via an
RNA-binding mechanism.
findings: []
- id: PMID:6090955
title: Primary structure of human transferrin receptor deduced from the mRNA
sequence.
findings: []
- id: PMID:7556058
title: A novel iron uptake mechanism mediated by GPI-anchored human p97.
findings: []
- id: PMID:8394993
title: Differential effects of antimycin A on endocytosis and exocytosis of
transferrin also are observed for internalization and externalization of
beta-adrenergic receptors.
findings: []
- id: PMID:9465039
title: The hemochromatosis gene product complexes with the transferrin
receptor and lowers its affinity for ligand binding.
findings: []
- id: PMID:9546397
title: Crystal structure of the hemochromatosis protein HFE and
characterization of its interaction with transferrin receptor.
findings: []
- id: PMID:9990067
title: Association of HFE protein with transferrin receptor in crypt
enterocytes of human duodenum.
findings: []
- id: Reactome:R-HSA-5691154
title: HFE binds TFRC dimer
findings: []
- id: Reactome:R-HSA-8866277
title: AP-2 directly binds some endocytic cargo
findings: []
- id: Reactome:R-HSA-8867754
title: F- and N- BAR domain proteins bind the clathrin-coated pit
findings: []
- id: Reactome:R-HSA-8867756
title: CLASP proteins and cargo are recruited to the nascent clathrin-coated
pit
findings: []
- id: Reactome:R-HSA-8868071
title: Clathrin recruits PIK3C2A
findings: []
- id: Reactome:R-HSA-8868072
title: Clathrin-associated PIK3C2A phosphorylates PI(4)P to PI(3,4)P2
findings: []
- id: Reactome:R-HSA-8868230
title: SNX9 recruits components of the actin polymerizing machinery
findings: []
- id: Reactome:R-HSA-8868236
title: BAR domain proteins recruit dynamin
findings: []
- id: Reactome:R-HSA-8868648
title: SYNJ hydrolyze PI(4,5)P2 to PI(4)P
findings: []
- id: Reactome:R-HSA-8868651
title: Endophilins recruit synaptojanins to the clathrin-coated pit
findings: []
- id: Reactome:R-HSA-8868658
title: HSPA8-mediated ATP hydrolysis promotes vesicle uncoating
findings: []
- id: Reactome:R-HSA-8868659
title: Clathrin recruits auxilins to the clathrin-coated vesicle
findings: []
- id: Reactome:R-HSA-8868660
title: Auxilin recruits HSPA8:ATP to the clathrin-coated vesicle
findings: []
- id: Reactome:R-HSA-8868661
title: Dynamin-mediated GTP hydrolysis promotes vesicle scission
findings: []
- id: Reactome:R-HSA-8869438
title: Dissociation of clathrin-associated proteins
findings: []
- id: Reactome:R-HSA-8871193
title: Dissociation of AAK1 and dephosphorylation of AP-2 mu2
findings: []
- id: Reactome:R-HSA-8871194
title: RAB5 and GAPVD1 bind AP-2
findings: []
- id: Reactome:R-HSA-917807
title: holoTF:TFRC dimer translocates from plasma membrane to endosome
membrane
findings: []
- id: Reactome:R-HSA-917814
title: apoTF:TFRC dimer translocates from endosome membrane to plasma
membrane
findings: []
- id: Reactome:R-HSA-917835
title: Fe3+ dissociates from holoTF:TFRC dimer
findings: []
- id: Reactome:R-HSA-917839
title: apo-Transferrin dissociates from the receptor complex
findings: []
- id: Reactome:R-HSA-917987
title: TFRC dimer binds 2xholoTF
findings: []
- id: file:human/TFRC/TFRC-deep-research-perplexity.md
title: Deep research on TFRC function
findings:
- statement: >-
TFRC mRNA abundance is post-transcriptionally controlled by iron status via five
iron-responsive elements (IREs) in its 3' UTR bound by IRP1/IRP2.
supporting_text: >-
The 3âČ untranslated region (3âČ UTR) of TFRC mRNA contains five IREs, which are
short conserved stem-loop structures recognized by two functionally similar iron
regulatory proteins, IRP1 and IRP2
reference_section_type: RESULTS
- statement: >-
A fraction of TfR1 is constitutively trafficked from recycling endosomes to
lysosomes for degradation via a Rab12/Dennd3-dependent pathway, and iron excess
promotes lysosomal degradation of TfR1.
supporting_text: >-
Small GTPase Rab12 and its upstream activator Dennd3 regulate the trafficking of
TfR1 from recycling endosomes to lysosomes, with Rab12 activation promoting TfR1
degradation
reference_section_type: RESULTS
- id: file:human/TFRC/TFRC-deep-research-falcon.md
title: Falcon deep research report on TFRC
findings:
- statement: >-
TfR1/CD71 is the major cell-surface receptor mediating cellular iron import,
a homodimeric type II transmembrane glycoprotein that preferentially binds
diferric (holo-)transferrin and internalizes the ligand-receptor complex.
supporting_text: >-
TfR1 is the major cell-surface receptor that mediates cellular iron import
by binding diferric transferrin
reference_section_type: RESULTS
- statement: >-
The core trafficking cycle proceeds by clathrin/AP-2-mediated endocytosis,
iron release in acidic endosomes (pH <= 5.5), and recycling of the receptor
to the cell surface, completing in approximately 10-20 minutes.
supporting_text: >-
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic
endosomes, and recycles apo-transferrin/TfR1 to the surface
reference_section_type: RESULTS
- statement: >-
Iron release occurs in acidic endosomes at pH <= 5.5 followed by receptor
recycling.
supporting_text: 'acidic endosomes (pH †5.5)'
reference_section_type: RESULTS
- statement: >-
The cytoplasmic tyrosine-based YTRF internalization motif is critical for
receptor internalization, and variants affecting this region cause an
internalization defect.
supporting_text: >-
the cytoplasmic YTRF motif explaining trafficking-sensitive pathogenic variants
reference_section_type: RESULTS
- statement: >-
Germline TFRC variants disrupting the YTRF-region internalization machinery
(p.R22W, p.Y20H) increase surface TfR1, impair iron uptake, and cause combined
immunodeficiency, establishing TfR1 as a non-redundant immune-metabolic
checkpoint supplying iron for lymphocyte proliferation and mitochondrial metabolism.
supporting_text: >-
Shows TfR1 is not only an iron receptor but a nonredundant immune-metabolic
checkpoint
reference_section_type: RESULTS
- statement: >-
The soluble transferrin receptor (sTfR) is a circulating form generated by
proteolytic cleavage/shedding of membrane TfR that rises with iron deficiency
and expanded erythropoiesis and serves as a clinical biomarker.
supporting_text: >-
generated by **proteolytic cleavage/shedding** of membrane TfR; it rises in
**iron deficiency** and with **expanded erythropoiesis**
reference_section_type: RESULTS
- statement: >-
TfR1 is a leading receptor-mediated transcytosis target for delivering biologics
across the blood-brain barrier and exploits CD71 overexpression for cancer-targeted
delivery.
supporting_text: >-
TfR1 is a leading target for **receptor-mediated transcytosis (RMT)** strategies
to shuttle biologics across the BBB
reference_section_type: DISCUSSION
core_functions:
- description: >-
TfR1 is the major cell-surface receptor for cellular iron import: it binds diferric
(holo-)transferrin at the plasma membrane and internalizes the ligand-receptor complex
by clathrin/AP-2-mediated endocytosis, releasing iron in acidic endosomes and recycling
apo-transferrin/TfR1 to the surface.
molecular_function:
id: GO:0004998
label: transferrin receptor activity
directly_involved_in:
- id: GO:0033572
label: transferrin transport
- id: GO:0006826
label: iron ion transport
- id: GO:0006898
label: receptor-mediated endocytosis
locations:
- id: GO:0009897
label: external side of plasma membrane
- id: GO:0005768
label: endosome
- id: GO:0055037
label: recycling endosome
supported_by:
- reference_id: PMID:10192390
supporting_text: >-
Diferric Trf interacts with cell-surface Trf receptor (Trfr) to undergo
receptor-mediated endocytosis into specialized endosomes
- reference_id: file:human/TFRC/TFRC-deep-research-falcon.md
supporting_text: >-
internalizes via clathrin/AP-2-mediated endocytosis, releases iron in acidic
endosomes, and recycles apo-transferrin/TfR1 to the surface
- description: >-
Through its iron-import activity, TfR1 is a central determinant of intracellular iron
levels and contributes to organism-level iron homeostasis; it is required for
erythropoiesis and its own mRNA is feedback-regulated by iron status via IRE/IRP control.
directly_involved_in:
- id: GO:0006879
label: intracellular iron ion homeostasis
- id: GO:0060586
label: multicellular organismal-level iron ion homeostasis
supported_by:
- reference_id: PMID:10192390
supporting_text: >-
Transferrin receptor is necessary for development of erythrocytes and the nervous
system
- reference_id: file:human/TFRC/TFRC-deep-research-perplexity.md
supporting_text: >-
The 3âČ untranslated region (3âČ UTR) of TFRC mRNA contains five IREs, which are
short conserved stem-loop structures recognized by two functionally similar iron
regulatory proteins, IRP1 and IRP2
- description: >-
TfR1 forms a regulatory complex with the hemochromatosis protein HFE, which lowers the
receptor's affinity for transferrin and links TfR1 to systemic iron sensing.
in_complex:
id: GO:1990712
label: HFE-transferrin receptor complex
supported_by:
- reference_id: PMID:9546397
supporting_text: >-
TfR:HFE stoichiometry (2:1) differs from TfR:transferrin stoichiometry (2:2)
proposed_new_terms: []
suggested_questions:
- question: >-
Should TfR1's role as a receptor for H-chain ferritin (and uptake of ferritin-bound
iron) be captured by a dedicated molecular-function term distinct from transferrin
receptor activity?
experts:
- Li L
- Seaman WE
- question: >-
Are TfR1's reported signaling/moonlighting functions (JNK regulation via stearoylation;
IKK-NF-kB signaling) sufficiently established to be considered part of its core
annotation, or should they remain non-core?
experts:
- Senyilmaz D
- Teleman AA
- Rocha S
suggested_experiments:
- hypothesis: >-
TfR1-mediated iron supply, rather than a direct signaling function, accounts for the
lymphocyte-proliferation and class-switching defects in TFRC-deficiency.
description: >-
Compare proliferation, isotype switching, and mitochondrial respiration in primary
lymphocytes carrying the internalization-defective TFRC variant versus wild-type, with
and without iron supplementation/bypass, to separate iron-supply from signaling effects.
experiment_type: functional rescue and immunometabolic assay
- hypothesis: >-
TfR1 stearoylation status controls mitochondrial morphology via JNK independently of its
iron-uptake activity.
description: >-
Use stearoylation-deficient TfR1 mutants (and ZDHHC6 manipulation) in cells with iron
uptake held constant to test whether JNK activation and mitochondrial fragmentation can
be uncoupled from transferrin-iron import.
experiment_type: structure-function and live-cell imaging assay
tags:
- ferroptosis