TOMM20 (Mitochondrial import receptor subunit TOM20 homolog) is a central receptor component of the translocase of the outer membrane of mitochondria (TOM complex). It is anchored in the mitochondrial outer membrane via a single-pass transmembrane domain and exposes its cytosolic TPR-containing domain to recognize N-terminal presequences (mitochondrial targeting sequences) of nuclear-encoded mitochondrial preproteins. Together with TOMM22, TOMM20 facilitates transfer of preproteins into the TOM40 translocation pore. TOMM20 is also a substrate of PRKN-mediated ubiquitination during mitophagy and plays a role in PINK1 stabilization at depolarized mitochondria (PMID:40080546, PMID:38848361). The protein recognizes the hydrophobic face of amphiphilic helical presequences via its binding groove (PMID:14557246, PMID:35733257).
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0005742
mitochondrial outer membrane translocase complex
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: TOMM20 is a well-established subunit of the TOM complex. Phylogenetic inference (IBA) for GO:0005742 is fully consistent with extensive experimental evidence showing TOMM20 as a core receptor component of the TOM complex in humans (PMID:18331822, PMID:35733257, PMID:40080546). The cryo-EM structure of the human TOM complex at 2.53 A resolution directly shows TOMM20 as a stoichiometric component (PMID:35733257). UniProt confirms membership in the TOM complex comprising TOMM5, TOMM6, TOMM7, TOMM20, TOMM22, and TOMM40.
Reason: Core component of TOMM20 function. IBA annotation is well supported by multiple independent structural and biochemical studies in human cells.
Supporting Evidence:
PMID:35733257
As a consequence, we resolved the human TOM complex containing Tom22 and Tom20 cytosolic domains at 3.74 Å
PMID:18331822
We immuno-isolated the TOM complex from HeLa cells expressing hTom22-FLAG and identified the human counterparts of Tom5 and Tom6, together with the other components including Tom7.
|
|
GO:0030943
mitochondrion targeting sequence binding
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: TOMM20 is the primary receptor for N-terminal mitochondrial targeting sequences (presequences). This IBA annotation is strongly supported by direct experimental evidence including the structural determination of the Tom20 cytosolic domain binding groove that recognizes amphipathic helical presequences (PMID:35733257), pull-down assays showing Tom20 binds Su9-DHFR-EGFP presequence fusion protein (PMID:35733257), and earlier work showing specific binding to mitochondrial preproteins but not proteins destined for other organelles (PMID:14557246). This is the core molecular function of TOMM20.
Reason: This is the primary molecular function of TOMM20 -- recognizing mitochondrial targeting sequences. Extensively validated by structural and biochemical evidence.
Supporting Evidence:
PMID:35733257
both Tom20 and Tom22 were pulled down by the DHFR-EGFP protein fused with the presequence of subunit 9 of F0-ATPase (Su9) (42), but not by DHFR-EGFP protein without Su9, suggesting that Tom22 indeed forms a complex with the presequence as Tom20.
PMID:14557246
Preproteins with NH2-terminal presequences are initially recognized by the receptor Tom20, although preproteins with internal targeting signals such as carrier proteins are recognized preferentially by Tom70.
|
|
GO:0008320
protein transmembrane transporter activity
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: IBA annotation of TOMM20 to GO:0008320 "protein transmembrane transporter activity" is somewhat imprecise. TOMM20 itself is a receptor that recognizes presequences and hands substrates off to the TOMM40 pore. It does not form the translocation channel. TOMM40 is the actual pore-forming subunit. However, the TOM complex as a whole does function as a protein transmembrane transporter, and TOMM20 is an essential component of that activity. The IBA annotation likely reflects the holistic function of the complex. This is acceptable at the broader level since TOMM20 contributes to the overall transporter activity, though it is the receptor subunit rather than the channel.
Reason: While TOMM20 is specifically the receptor subunit rather than the pore, it is an integral and essential part of the protein translocation machinery. The IBA annotation reflects the conserved role of TOM20 family members in the protein import pathway. This broad annotation is phylogenetically well supported.
Supporting Evidence:
PMID:35733257
Tom20, as the major import receptor, together with Tom70 and Tom22 target mitochondrial precursor proteins in the cytosol precisely
|
|
GO:0016031
tRNA import into mitochondrion
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: IBA annotation of TOMM20 to GO:0016031 "tRNA import into mitochondrion" is unexpected. While there is evidence in some organisms (yeast, plants) that the TOM complex may participate in tRNA import into mitochondria, this is not a well-established function of human TOMM20. The primary literature on human TOMM20 focuses exclusively on protein import. The IBA inference may reflect functions established in other organisms in the Tom20 family phylogeny. This is not a core function of TOMM20 in humans and should be flagged.
Reason: The IBA phylogenetic inference may be valid for some family members but this is not a well-documented function in human cells. TOMM20 is primarily characterized as a protein import receptor. Keeping as non-core since the IBA inference has phylogenetic basis but it does not represent the primary function of human TOMM20.
|
|
GO:0030150
protein import into mitochondrial matrix
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: TOMM20 recognizes presequence-bearing preproteins destined for the mitochondrial matrix and inner membrane. The TOM complex, of which TOMM20 is the primary presequence receptor, is the essential entry gate for matrix-targeted proteins. This IBA annotation is well supported by the known biology: TOMM20 preferentially handles precursors destined for the matrix and inner membrane (deep research, Su et al. 2024). Knockdown of small Tom proteins compromises matrix import of preprotein (PMID:18331822).
Reason: Core biological process for TOMM20. As the presequence receptor of the TOM complex, TOMM20 is essential for protein import into the mitochondrial matrix.
Supporting Evidence:
PMID:18331822
Matrix import of preprotein was affected by double knockdown of any combination of small Tom proteins.
PMID:35733257
the precursor proteins can be recognized and transferred from the cytosol to four different locations of mitochondria: the outer membrane (OM), the inner membrane (IM), the intermembrane space (IMS), and the matrix
|
|
GO:0005741
mitochondrial outer membrane
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: IEA annotation from UniProt subcellular location mapping. TOMM20 is anchored in the mitochondrial outer membrane via an N-terminal transmembrane helix (residues 7-24, per UniProt). This is extensively confirmed by multiple IDA experiments and structural studies (PMID:25997101, PMID:40080546, PMID:35733257).
Reason: Correct localization. TOMM20 is an integral membrane protein of the mitochondrial outer membrane. The IEA mapping is fully consistent with experimental evidence.
|
|
GO:0005742
mitochondrial outer membrane translocase complex
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: IEA annotation from InterPro domain mapping. TOMM20 contains the MAS20 domain (PF02064/IPR002056) which is diagnostic for the Tom20 family of mitochondrial import receptors. This correctly maps to TOM complex membership. Consistent with the IBA annotation and extensive experimental evidence.
Reason: Correct. The InterPro-based inference is fully supported by experimental data showing TOMM20 is a component of the TOM complex.
|
|
GO:0006605
protein targeting
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: IEA annotation from InterPro mapping. GO:0006605 "protein targeting" is a broad parent term. TOMM20 participates in protein targeting to the mitochondrion specifically. While correct, this is less informative than the more specific GO:0006626 "protein targeting to mitochondrion" which is also annotated to TOMM20 (IDA from PMID:14557246). The broader IEA annotation is acceptable as it does not conflict with the more specific terms.
Reason: Correct but broad. The IEA mapping captures the general protein targeting role of TOMM20. More specific terms (GO:0006626, GO:0030150) are also present in the annotation set.
|
|
GO:0006886
intracellular protein transport
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: IEA annotation from InterPro mapping. GO:0006886 "intracellular protein transport" is a broad parent term that is technically correct for TOMM20 as it mediates transport of nuclear-encoded proteins into the mitochondrion. More specific process terms are present in the annotation set.
Reason: Correct but broad. The IEA mapping is consistent with TOMM20 function in mitochondrial protein import. Not misleading even though more specific terms exist.
|
|
GO:0015031
protein transport
|
IEA
GO_REF:0000043 |
ACCEPT |
Summary: IEA annotation from UniProt keyword mapping ("Protein transport"). This is a very broad term. TOMM20 is part of the protein import machinery of mitochondria, so this is technically correct but uninformative. More specific annotations already exist in the set.
Reason: Correct but very broad parent term. Acceptable as an IEA that is consistent with the more specific experimental annotations.
|
|
GO:0030150
protein import into mitochondrial matrix
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: IEA annotation from InterPro mapping. Duplicate of the IBA annotation to the same term. Both are correct -- TOMM20 is essential for protein import into the mitochondrial matrix as the primary presequence receptor of the TOM complex.
Reason: Correct. Consistent with the IBA annotation and extensive experimental evidence for TOMM20 role in matrix protein import.
|
|
GO:0005515
protein binding
|
IPI
PMID:30021884 Histone Interaction Landscapes Visualized by Crosslinking Ma... |
REMOVE |
Summary: IPI annotation from a large-scale crosslinking mass spectrometry study of histone interactions in cell nuclei (PMID:30021884). TOMM20 appearing in this dataset is likely a contaminant or non-specific interaction, as TOMM20 is a mitochondrial outer membrane protein with no known nuclear function. The term "protein binding" is uninformative and does not reflect the actual molecular function of TOMM20.
Reason: The annotation to "protein binding" from a nuclear crosslinking MS study is uninformative and likely reflects a non-specific or contaminating interaction. TOMM20 is a mitochondrial protein with no known nuclear role. "Protein binding" does not capture any meaningful functional information about TOMM20.
|
|
GO:0005515
protein binding
|
IPI
PMID:35271311 OpenCell: Endogenous tagging for the cartography of human ce... |
REMOVE |
Summary: IPI annotation from the OpenCell project (PMID:35271311), a large-scale endogenous tagging study. While TOMM20 certainly binds proteins (it is a receptor for preproteins and part of the TOM complex), the generic term "protein binding" does not convey any functional information. TOMM20 has more specific molecular function annotations (GO:0030943 mitochondrion targeting sequence binding) that better capture its binding activity.
Reason: "Protein binding" is uninformative for TOMM20. The specific binding function is already captured by GO:0030943 "mitochondrion targeting sequence binding." Per curation guidelines, generic protein binding annotations should be avoided in favor of more informative terms.
|
|
GO:0005739
mitochondrion
|
IEA
GO_REF:0000107 |
ACCEPT |
Summary: IEA annotation from Ensembl Compara ortholog transfer. TOMM20 is a mitochondrial protein, confirmed by multiple IDA annotations and structural studies. The broader "mitochondrion" term is less specific than "mitochondrial outer membrane" but is not incorrect.
Reason: Correct. TOMM20 is a mitochondrial protein. More specific localization terms (mitochondrial outer membrane, TOM complex) are also present.
|
|
GO:0005740
mitochondrial envelope
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: IEA annotation from combined automated methods. GO:0005740 "mitochondrial envelope" is correct but less specific than "mitochondrial outer membrane" (GO:0005741). TOMM20 is specifically in the outer membrane, not the inner membrane or intermembrane space. The annotation is not wrong, just broad.
Reason: Correct but broad. TOMM20 is in the mitochondrial outer membrane, which is part of the mitochondrial envelope. More specific annotations exist.
|
|
GO:0071944
cell periphery
|
IEA
GO_REF:0000107 |
REMOVE |
Summary: IEA annotation from Ensembl Compara ortholog transfer. GO:0071944 "cell periphery" is unexpected for TOMM20, which is a mitochondrial outer membrane protein. There is no strong evidence that TOMM20 localizes to the cell periphery. This may result from erroneous ortholog transfer or a broad interpretation from a high-throughput study. TOMM20 is not primarily a cell periphery protein.
Reason: TOMM20 is a mitochondrial outer membrane protein with no established localization to the cell periphery. This IEA annotation is likely erroneous or reflects non-specific detection in a high-throughput experiment. The primary localization is well established as the mitochondrial outer membrane.
|
|
GO:0097225
sperm midpiece
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: IEA annotation from Ensembl Compara ortholog transfer. The sperm midpiece is rich in mitochondria (the mitochondrial sheath), so detection of TOMM20 there is expected for any mitochondrial outer membrane protein. This annotation is technically correct but reflects the general mitochondrial localization rather than a sperm-specific function.
Reason: Correct in the sense that mitochondria are abundant in the sperm midpiece and TOMM20 would be present there. However, this reflects general mitochondrial localization rather than a specific role in sperm biology. Not a core annotation for understanding TOMM20 function.
|
|
GO:0140494
migrasome
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: IEA annotation from Ensembl Compara ortholog transfer. Migrasomes are cellular organelles released during cell migration. TOMM20 appearing in migrasomes could reflect mitochondrial content within migrasomes, which has been observed. However, this is not a primary localization of TOMM20 and likely reflects incidental detection of mitochondrial proteins in migrasomes.
Reason: TOMM20 may be present in migrasomes due to mitochondrial content, but this does not represent a specific function or primary localization of TOMM20. Keeping as non-core since migrasomes can contain mitochondria.
|
|
GO:0005739
mitochondrion
|
IDA
GO_REF:0000052 |
ACCEPT |
Summary: IDA annotation based on immunofluorescence data curation. TOMM20 is routinely used as a mitochondrial marker in immunofluorescence studies, making this one of the most well-supported localization annotations possible. TOMM20 antibody staining is a standard method for visualizing mitochondria.
Reason: Well established. TOMM20 is one of the most commonly used mitochondrial markers in immunofluorescence.
|
|
GO:0005741
mitochondrial outer membrane
|
NAS
PMID:18331822 Identification of Tom5 and Tom6 in the preprotein translocas... |
ACCEPT |
Summary: NAS annotation citing Kato & Mihara 2008, which identified Tom5 and Tom6 in the human TOM complex. The paper immuno-isolated the TOM complex from HeLa cells and confirmed TOMM20 as a component, along with other subunits. As a TOM complex subunit, TOMM20 is in the mitochondrial outer membrane.
Reason: Correct. PMID:18331822 confirms TOMM20 as part of the TOM complex in human cells, which is in the mitochondrial outer membrane.
Supporting Evidence:
PMID:18331822
We immuno-isolated the TOM complex from HeLa cells expressing hTom22-FLAG and identified the human counterparts of Tom5 and Tom6, together with the other components including Tom7.
|
|
GO:0045040
protein insertion into mitochondrial outer membrane
|
NAS
PMID:18331822 Identification of Tom5 and Tom6 in the preprotein translocas... |
MARK AS OVER ANNOTATED |
Summary: NAS annotation to GO:0045040 "protein insertion into mitochondrial outer membrane" from PMID:18331822. This GO term describes the process of inserting proteins from outside the organelle into the mitochondrial outer membrane, mediated by large outer membrane translocase complexes. While the TOM complex does handle some outer membrane proteins, this process is more specifically associated with the SAM complex (GO:0001401) and MIM complex (GO:0140595). TOMM20 primarily recognizes presequence-bearing proteins destined for the matrix and inner membrane, not outer membrane insertion. The TOM complex mediates initial recognition and translocation across the outer membrane, but insertion into the outer membrane is primarily a SAM/MIM function.
Reason: TOMM20 is the presequence receptor primarily handling matrix/inner membrane destined precursors. Protein insertion into the mitochondrial outer membrane is primarily mediated by the SAM complex, not the TOM complex receptor subunit TOMM20. While TOM participates in the initial recognition step for beta-barrel precursors, TOMM20 specifically recognizes N-terminal presequences, not the signals used by outer membrane beta-barrel proteins.
|
|
GO:0005739
mitochondrion
|
HTP
PMID:34800366 Quantitative high-confidence human mitochondrial proteome an... |
ACCEPT |
Summary: HTP annotation from a quantitative high-confidence human mitochondrial proteome study (PMID:34800366). TOMM20 was identified as a mitochondrial protein with high confidence, consistent with its well-established localization.
Reason: Correct. High-throughput proteomics confirms TOMM20 in the mitochondrial proteome, consistent with all other evidence.
|
|
GO:0005515
protein binding
|
IPI
PMID:38848361 Mechanism of human PINK1 activation at the TOM complex in a ... |
REMOVE |
Summary: IPI annotation from PMID:38848361 (Raimi et al. 2024), which demonstrated that TOMM20 interacts with PINK1 in a reconstituted system. The study showed that TOM20 and TOM70 receptor subunits are required for optimal PINK1 activation and mapped sites of interaction using AlphaFold modeling and mutagenesis. While the interaction with PINK1 is genuine and functionally significant, "protein binding" does not capture the specific nature of this interaction. A more informative term would describe the PINK1-TOMM20 interaction in the context of mitophagy signaling.
Reason: The PINK1-TOMM20 interaction is real and important, but "protein binding" is uninformative per curation guidelines. The specific biological context is PINK1 activation at damaged mitochondria, which is better captured by process annotations. TOMM20 binding to PINK1 is part of its function as a TOM complex receptor, already captured by GO:0030943 and GO:0005742.
Supporting Evidence:
PMID:38848361
We unambiguously demonstrate that the TOM20 and TOM70 receptor subunits are required for optimal PINK1 activation and map their sites of interaction with PINK1 using AlphaFold structural modeling and mutagenesis.
|
|
GO:0030943
mitochondrion targeting sequence binding
|
IDA
PMID:35733257 Structural basis of Tom20 and Tom22 cytosolic domains as the... |
ACCEPT |
Summary: IDA annotation from Su et al. 2022 (PMID:35733257), which determined the cryo-EM structure of the human TOM complex at 2.53 A and captured the TOM complex with Tom20 and Tom22 cytosolic domains at 3.74 A. Pull-down experiments directly demonstrated that Tom20 binds the presequence of Su9-DHFR-EGFP but not DHFR-EGFP without the presequence, confirming specific mitochondrial targeting sequence binding. This is the core molecular function of TOMM20.
Reason: Direct experimental evidence demonstrating TOMM20 binds mitochondrial targeting sequences specifically. This is the best-supported core molecular function annotation for TOMM20.
Supporting Evidence:
PMID:35733257
both Tom20 and Tom22 were pulled down by the DHFR-EGFP protein fused with the presequence of subunit 9 of F0-ATPase (Su9) (42), but not by DHFR-EGFP protein without Su9, suggesting that Tom22 indeed forms a complex with the presequence as Tom20.As the cytosolic domain of Tom20 is the main site for presequence binding
|
|
GO:0005739
mitochondrion
|
IDA
PMID:32848200 Ttm50 facilitates calpain activation by anchoring it to calc... |
ACCEPT |
Summary: IDA annotation from PMID:32848200. The title of this paper is about Ttm50 facilitating calpain activation. TOMM20 was likely used as a mitochondrial marker in this study. The localization to mitochondrion is well established.
Reason: Correct localization. TOMM20 is a mitochondrial protein. Likely used as a marker in this study confirming mitochondrial localization.
|
|
GO:0005741
mitochondrial outer membrane
|
TAS
Reactome:R-HSA-5205649 |
ACCEPT |
Summary: TAS annotation from Reactome pathway R-HSA-5205649 "p62 links damaged mitochondria to LC3." TOMM20 is placed at the mitochondrial outer membrane in this mitophagy pathway, which is correct. TOMM20 is a ubiquitination substrate of PRKN during mitophagy.
Reason: Correct localization within the context of the PINK1-PRKN mitophagy pathway. TOMM20 is a substrate of PRKN ubiquitination on the mitochondrial outer membrane.
|
|
GO:0005741
mitochondrial outer membrane
|
TAS
Reactome:R-HSA-5205663 |
ACCEPT |
Summary: TAS annotation from Reactome pathway R-HSA-5205663 "LC3 binds the autophagosome membrane Atg5-Atg12 complex." TOMM20 localization to mitochondrial outer membrane in this autophagy context is correct.
Reason: Correct localization. Duplicate evidence for TOMM20 at the mitochondrial outer membrane from the mitophagy pathway context.
|
|
GO:0005741
mitochondrial outer membrane
|
TAS
Reactome:R-HSA-5205673 |
ACCEPT |
Summary: TAS annotation from Reactome pathway R-HSA-5205673 "p62 binds ubiquitinated mitochondrial substrates." TOMM20 is a known ubiquitination substrate on the mitochondrial outer membrane during mitophagy. Correct localization.
Reason: Correct. TOMM20 is ubiquitinated by PRKN at K35, K56, K61, and K68 on the mitochondrial outer membrane during mitophagy.
|
|
GO:0005741
mitochondrial outer membrane
|
TAS
Reactome:R-HSA-9824888 |
ACCEPT |
Summary: TAS annotation from Reactome pathway R-HSA-9824888 "OPTN, TBK1 bind ubiquitinated MOM proteins." TOMM20 is a ubiquitinated MOM substrate. Correct localization.
Reason: Correct localization in the mitophagy pathway context.
|
|
GO:0005741
mitochondrial outer membrane
|
TAS
Reactome:R-HSA-9824892 |
ACCEPT |
Summary: TAS annotation from Reactome pathway R-HSA-9824892 "MAP1LC3B binds p-S-OPTN bound to Ub-mitochondria." TOMM20 at mitochondrial outer membrane in mitophagy context. Correct localization.
Reason: Correct localization. Redundant with other mitochondrial outer membrane TAS annotations from Reactome mitophagy pathway.
|
|
GO:0005741
mitochondrial outer membrane
|
TAS
Reactome:R-HSA-9824894 |
ACCEPT |
Summary: TAS annotation from Reactome pathway R-HSA-9824894 "TBK1 is phosphorylated within TBK1:OPTN:Ub-mitochondrial proteins." TOMM20 at mitochondrial outer membrane. Correct localization.
Reason: Correct localization in the mitophagy signaling context.
|
|
GO:0005741
mitochondrial outer membrane
|
TAS
Reactome:R-HSA-9824897 |
ACCEPT |
Summary: TAS annotation from Reactome pathway R-HSA-9824897 "p-S-TBK1 phosphorylates OPTN." TOMM20 at mitochondrial outer membrane in the mitophagy signaling cascade. Correct localization.
Reason: Correct localization.
|
|
GO:0005741
mitochondrial outer membrane
|
TAS
Reactome:R-HSA-9834070 |
ACCEPT |
Summary: TAS annotation from Reactome pathway R-HSA-9834070 "PRKN ubiquitinates MOM substrates." TOMM20 is a direct ubiquitination substrate of PRKN on the mitochondrial outer membrane (PMID:24896179, PMID:25621951 per UniProt). Correct and specifically relevant.
Reason: Correct. TOMM20 is directly ubiquitinated by PRKN at K35, K56, K61, and K68 on the mitochondrial outer membrane.
|
|
GO:0005741
mitochondrial outer membrane
|
TAS
Reactome:R-HSA-9840807 |
ACCEPT |
Summary: TAS annotation from Reactome pathway R-HSA-9840807 "OPTN binds ATG9A." TOMM20 at mitochondrial outer membrane in the mitophagy context. Correct localization.
Reason: Correct localization.
|
|
GO:0005741
mitochondrial outer membrane
|
TAS
Reactome:R-HSA-9834945 |
ACCEPT |
Summary: TAS annotation from Reactome pathway R-HSA-9834945 "PINK1 phosphorylates Ub on MOM proteins." The Reactome entry explicitly lists TOMM20 as one of the MOM proteins whose ubiquitin moieties are phosphorylated by PINK1. Correct localization.
Reason: Correct. TOMM20 is specifically named as a PINK1 substrate in this Reactome pathway.
|
|
GO:0005741
mitochondrial outer membrane
|
TAS
Reactome:R-HSA-9835009 |
ACCEPT |
Summary: TAS annotation from Reactome pathway R-HSA-9835009 "PRKN binds p-S-Ub:MOM proteins." TOMM20 at mitochondrial outer membrane as a ubiquitinated substrate for PRKN binding. Correct localization.
Reason: Correct localization in the PINK1-PRKN mitophagy pathway.
|
|
GO:0005741
mitochondrial outer membrane
|
TAS
Reactome:R-HSA-9835011 |
ACCEPT |
Summary: TAS annotation from Reactome pathway R-HSA-9835011 "PINK1 phosphorylates PRKN at S65." TOMM20 at mitochondrial outer membrane in the context of PINK1 activation at the TOM complex. Correct localization.
Reason: Correct localization.
|
|
GO:0097225
sperm midpiece
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: ISS annotation from manual transfer by curator judgment. The sperm midpiece contains the mitochondrial sheath, which is densely packed with mitochondria. TOMM20, as a ubiquitous mitochondrial outer membrane protein, would be present in sperm midpiece mitochondria. This is a valid localization but not specific to TOMM20 function.
Reason: Correct due to mitochondrial content of the sperm midpiece. Not a core annotation for understanding TOMM20 function; it simply reflects the general mitochondrial localization in a specialized cell type.
|
|
GO:0005739
mitochondrion
|
IDA
PMID:20628368 Tom70 mediates activation of interferon regulatory factor 3 ... |
ACCEPT |
Summary: IDA annotation from PMID:20628368 (Liu et al. 2010), a study on Tom70 mediating activation of IRF3 on mitochondria. TOMM20 was used as a mitochondrial marker or co-localization control in this study. UniProt cites this paper for subcellular location evidence. Correct localization.
Reason: Correct. TOMM20 mitochondrial localization confirmed in a study where it was used as a mitochondrial marker.
|
|
GO:0005739
mitochondrion
|
IDA
PMID:25327288 Selective VPS34 inhibitor blocks autophagy and uncovers a ro... |
ACCEPT |
Summary: IDA annotation from PMID:25327288 (Dowdle et al. 2014), a study on VPS34 inhibitor and autophagy/ferritinophagy. TOMM20 was likely used as a mitochondrial marker in this study. Correct localization.
Reason: Correct localization. TOMM20 is widely used as a mitochondrial marker.
|
|
GO:0005741
mitochondrial outer membrane
|
TAS
Reactome:R-HSA-5696872 |
ACCEPT |
Summary: TAS annotation from Reactome pathway R-HSA-5696872 "USP30 deubiquitinates Ub-MOM proteins." TOMM20 is a substrate of both PRKN (ubiquitination) and USP30 (deubiquitination) at the mitochondrial outer membrane (PMID:24896179). Correct and functionally relevant localization.
Reason: Correct. TOMM20 is a known substrate of USP30 deubiquitination on the mitochondrial outer membrane, documented in PMID:24896179.
|
|
GO:0005741
mitochondrial outer membrane
|
IDA
PMID:25997101 QIL1 is a novel mitochondrial protein required for MICOS com... |
ACCEPT |
Summary: IDA annotation from PMID:25997101 (Guarani et al. 2015), a study on QIL1/MICOS complex. TOMM20 was used as a mitochondrial outer membrane marker via immunofluorescence co-staining with MICOS subunits. The paper states alpha-TOMM20 was used for immunofluorescence analysis to verify mitochondrial localization. UniProt also cites this paper for subcellular location evidence. Correct localization.
Reason: Correct. TOMM20 used as a mitochondrial outer membrane marker in immunofluorescence studies, confirming its localization.
Supporting Evidence:
PMID:25997101
Confocal microscopy after immunostaining with α-HA and α-TOMM20 verified that each protein was targeted to mitochondria in HeLa cells
|
|
GO:0044233
mitochondria-associated endoplasmic reticulum membrane contact site
|
IDA
PMID:23455425 Autophagosomes form at ER-mitochondria contact sites. |
KEEP AS NON CORE |
Summary: IDA annotation from PMID:23455425 (Hamasaki et al. 2013), "Autophagosomes form at ER-mitochondria contact sites." TOMM20 was likely detected at MAM (mitochondria-associated ER membrane) contact sites. As an outer membrane protein of mitochondria, TOMM20 would be present at ER-mitochondria contact regions where the outer membrane faces the ER. This is consistent with its localization but may not represent a specific function at MAMs.
Reason: TOMM20 as a mitochondrial outer membrane protein could be present at MAM contact sites, but there is no evidence that TOMM20 has a specific functional role at these sites. This likely reflects detection of the mitochondrial outer membrane at ER contact points rather than a specific MAM-targeted function.
|
|
GO:0005741
mitochondrial outer membrane
|
TAS
Reactome:R-HSA-5205661 |
ACCEPT |
Summary: TAS annotation from Reactome pathway R-HSA-5205661 "Pink1 is recruited from the cytoplasm to the mitochondria." TOMM20 at the mitochondrial outer membrane in the context of PINK1 import. Recent evidence shows TOMM20 directly gates PINK1 activity and mediates tethering of TOM and TIM23 translocases upon mitochondrial stress (PMID:38416681 cited in UniProt). Correct and functionally relevant.
Reason: Correct. TOMM20 is at the mitochondrial outer membrane where it participates in PINK1 stabilization upon mitochondrial depolarization.
|
|
GO:0005515
protein binding
|
IPI
PMID:20231292 Identification and characterization of mitochondrial targeti... |
REMOVE |
Summary: IPI annotation from PMID:20231292 (Li et al. 2010), which identified the mitochondrial targeting sequence of APEX1 (apurinic/apyrimidinic endonuclease 1) and showed it interacts with TOMM20 for mitochondrial import. UniProt confirms this interaction. However, "protein binding" is uninformative. The actual function demonstrated is that TOMM20 recognizes the MTS of APEX1, which is already captured by GO:0030943 "mitochondrion targeting sequence binding."
Reason: The interaction between TOMM20 and APEX1 is genuine and reflects TOMM20 recognizing the mitochondrial targeting sequence of APEX1. However, "protein binding" is uninformative. This function is already captured by GO:0030943 "mitochondrion targeting sequence binding." Per curation guidelines, avoid generic protein binding annotations.
Supporting Evidence:
PMID:20231292
Identification and characterization of mitochondrial targeting sequence of human apurinic/apyrimidinic endonuclease 1.
|
|
GO:0005742
mitochondrial outer membrane translocase complex
|
TAS
PMID:15644312 Dissection of the mitochondrial import and assembly pathway ... |
ACCEPT |
Summary: TAS annotation from PMID:15644312 (Humphries et al. 2005), which dissected the import and assembly pathway for human Tom40. The study confirms TOMM20 as part of the TOM complex by showing that the Tom40 precursor forms its first stable intermediate with the outer face of the TOM complex. Correct component annotation.
Reason: Correct. The study demonstrates the TOM complex in human cells and TOMM20 is a well-established component.
Supporting Evidence:
PMID:15644312
The precursor then forms its first stable intermediate with the outer face of the TOM complex before its membrane integration and assembly.
|
|
GO:0005515
protein binding
|
IPI
PMID:14557246 AIP is a mitochondrial import mediator that binds to both im... |
REMOVE |
Summary: IPI annotation from PMID:14557246 (Yano et al. 2003), which showed that AIP binds to Tom20 and that both proteins bind mitochondrial preproteins. The binding between Tom20 and preproteins is specific to mitochondrial targeting sequences. "Protein binding" is uninformative and does not capture the specificity demonstrated in this paper.
Reason: The interaction demonstrated is specific preprotein binding via mitochondrial targeting sequences, which is already captured by GO:0030943 "mitochondrion targeting sequence binding." The generic "protein binding" annotation does not add functional information.
Supporting Evidence:
PMID:14557246
AIP as well as Tom20 binds specifically to mitochondrial preproteins [...] no or little binding of AIP and Tom20 to proteins destined for other organelles, including peroxisomes, ER, and nucleus, was observed.
|
|
GO:0005742
mitochondrial outer membrane translocase complex
|
TAS
PMID:14557246 AIP is a mitochondrial import mediator that binds to both im... |
ACCEPT |
Summary: TAS annotation from PMID:14557246 (Yano et al. 2003). The paper describes Tom20 as part of the TOM complex, the preprotein translocase of the mitochondrial outer membrane. Correct component annotation.
Reason: Correct. The paper confirms TOMM20 as a component of the TOM complex.
Supporting Evidence:
PMID:14557246
Preproteins with NH2-terminal presequences are initially recognized by the receptor Tom20, although preproteins with internal targeting signals such as carrier proteins are recognized preferentially by Tom70.
|
|
GO:0015450
protein-transporting ATPase activity
|
IDA
PMID:14557246 AIP is a mitochondrial import mediator that binds to both im... |
REMOVE |
Summary: IDA annotation of TOMM20 to GO:0015450 "protein-transporting ATPase activity" from PMID:14557246. This is problematic. GO:0015450 describes "primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate." TOMM20 does not have ATPase activity. It is a receptor that recognizes presequences. The TOM complex as a whole translocates proteins, but the driving force is primarily the membrane potential and mitochondrial Hsp70 (mtHsp70) pulling from the matrix side, not ATP hydrolysis by TOMM20 itself. TOMM20 has no known ATPase catalytic activity. This annotation appears to be a misattribution of the overall translocation mechanism to the receptor subunit.
Reason: TOMM20 does not possess ATPase activity. It is a receptor subunit that recognizes presequences via its TPR-like binding groove. The energy for protein translocation across the outer membrane comes from the membrane potential and mtHsp70 ATPase activity in the matrix, not from TOMM20. There is no evidence in PMID:14557246 or any other publication that TOMM20 itself has ATPase activity.
Supporting Evidence:
PMID:35733257
Tom20, as the major import receptor, together with Tom70 and Tom22 target mitochondrial precursor proteins in the cytosol precisely
|
|
GO:0051082
unfolded protein binding
|
IDA
PMID:14557246 AIP is a mitochondrial import mediator that binds to both im... |
MARK AS OVER ANNOTATED |
Summary: This annotation to GO:0051082 "unfolded protein binding" for TOMM20 is misleading and represents an over-annotation. The cited paper (Yano et al. 2003, PMID:14557246) is primarily about AIP (arylhydrocarbon receptor-interacting protein), not Tom20. The paper demonstrates that AIP is the protein with chaperone-like activity that suppresses thermal aggregation of substrate proteins and binds unfolded proteins. Tom20 is shown to bind mitochondrial preproteins via their N-terminal presequences (targeting signals), not based on their folding state. The binding groove of Tom20 recognizes the hydrophobic face of amphiphilic helical presequences through hydrophobic interactions, which is a signal sequence recognition function, not an unfolded protein sensing function. The paper explicitly states that Tom20 binds preproteins and non-mitochondrial proteins were not bound, demonstrating specificity for mitochondrial targeting signals rather than unfolded protein states per se. Furthermore, TOMM20 already has the correct and more specific annotation to GO:0030943 "mitochondrion targeting sequence binding" (IDA from PMID:35733257 and IBA from GO_REF:0000033). The GO:0051082 term is being obsoleted (go-ontology issue 30962) precisely because it conflates signal recognition with chaperone activity. TOMM20 is a protein import receptor, not a chaperone.
Reason: TOMM20 does not function as an unfolded protein binding chaperone. The evidence in PMID:14557246 shows Tom20 recognizes mitochondrial presequences via hydrophobic interactions with the amphiphilic helical targeting signal. The paper states: "The binding groove of Tom20 mainly consists of a TPR and a glutamine-rich segment, and hydrophobic residues in the groove interact with the hydrophobic face of the amphiphilic helical presequence" and "AIP as well as Tom20 binds specifically to mitochondrial preproteins" while "no or little binding of AIP and Tom20 to proteins destined for other organelles" was observed. This demonstrates signal-specific recognition, not general unfolded protein binding. The chaperone-like aggregation suppression activity described in the paper belongs to AIP, not Tom20. TOMM20 already has the correct annotation GO:0030943 "mitochondrion targeting sequence binding" which accurately captures its molecular function. GO:0051082 is being obsoleted (go-ontology#30962) because it conflates distinct molecular mechanisms.
Proposed replacements:
mitochondrion targeting sequence binding
Supporting Evidence:
PMID:14557246
The binding groove of Tom20 mainly consists of a TPR and a glutamine-rich segment, and hydrophobic residues in the groove interact with the hydrophobic face of the amphiphilic helical presequence.
PMID:14557246
AIP as well as Tom20 binds specifically to mitochondrial preproteins [...] no or little binding of AIP and Tom20 to proteins destined for other organelles, including peroxisomes, ER, and nucleus, was observed.
PMID:14557246
AIP was found to function as a chaperone to suppress thermal aggregation of rhodanese and citrate synthase (Fig. 6). AIP may function as a chaperone to maintain mitochondria-targeted preproteins unfolded and to suppress their aggregation.
PMID:14557246
Preproteins with NH2-terminal presequences are initially recognized by the receptor Tom20, although preproteins with internal targeting signals such as carrier proteins are recognized preferentially by Tom70.
|
|
GO:0070585
protein localization to mitochondrion
|
IDA
PMID:14557246 AIP is a mitochondrial import mediator that binds to both im... |
ACCEPT |
Summary: IDA annotation from PMID:14557246 (Yano et al. 2003). The paper demonstrates that Tom20 recognizes preproteins via their mitochondrial targeting sequences and is part of the TOM complex that facilitates protein import. GO:0070585 "protein localization to mitochondrion" is a broad process term that accurately describes the outcome of TOMM20 activity. While more specific terms like GO:0006626 "protein targeting to mitochondrion" or GO:0030150 "protein import into mitochondrial matrix" are also appropriate, this broader term is not incorrect.
Reason: Correct. TOMM20 facilitates protein localization to the mitochondrion by recognizing mitochondrial targeting sequences. This is a core biological process for TOMM20.
Supporting Evidence:
PMID:14557246
Preproteins with NH2-terminal presequences are initially recognized by the receptor Tom20
|
|
GO:0005742
mitochondrial outer membrane translocase complex
|
NAS
PMID:7498524 A human homolog of the mitochondrial protein import receptor... |
ACCEPT |
Summary: NAS annotation from PMID:7498524 (Seki et al. 1995), one of the original papers identifying human TOMM20 (then called Mom19 homolog). The paper showed that the human Mom19 homolog is targeted to yeast mitochondria and specifically associates with the outer membrane receptor complex. This was the original identification of human TOMM20 as a TOM complex component.
Reason: Correct. This is the foundational paper identifying human TOMM20 as a component of the mitochondrial outer membrane translocase complex.
Supporting Evidence:
PMID:7498524
the human Mom19 homolog is targeted to isolated yeast mitochondria and specifically associates with the outer membrane receptor complex, suggesting that indeed a mitochondrial import receptor was identified.
|
provider: falcon
model: Edison Scientific Literature
cached: false
start_time: '2026-02-09T10:05:10.833719'
end_time: '2026-02-09T10:12:11.178289'
duration_seconds: 420.34
template_file: templates/gene_research_go_focused.md
template_variables:
organism: human
gene_id: TOMM20
gene_symbol: TOMM20
uniprot_accession: Q15388
protein_description: 'RecName: Full=Mitochondrial import receptor subunit TOM20
homolog; AltName: Full=Mitochondrial 20 kDa outer membrane protein; AltName: Full=Outer
mitochondrial membrane receptor Tom20;'
gene_info: Name=TOMM20; Synonyms=KIAA0016;
organism_full: Homo sapiens (Human).
protein_family: Belongs to the Tom20 family. .
protein_domains: MAS20. (IPR002056); MAS20_rcpt_metazoan. (IPR022422); Tom20_dom_sf.
(IPR023392); MAS20 (PF02064)
provider_config:
timeout: 600
max_retries: 3
parameters:
allowed_domains: []
temperature: 0.1
citation_count: 28
BEFORE YOU BEGIN RESEARCH: You MUST verify you are researching the CORRECT gene/protein. Gene symbols can be ambiguous, especially for less well-characterized genes from non-model organisms.
DO NOT PROCEED WITH RESEARCH ON A DIFFERENT GENE. Instead:
- State clearly: "The gene symbol 'TOMM20' is ambiguous or literature is limited for this specific protein"
- Explain what you found (e.g., "Found extensive literature on a different gene with the same symbol in a different organism")
- Describe the protein based ONLY on the UniProt information provided above
- Suggest that the protein function can be inferred from domain/family information
Please provide a comprehensive research report on the gene TOMM20 (gene ID: TOMM20, UniProt: Q15388) in human.
The research report should be a detailed narrative explaining the function, biological processes, and localization of the gene product. Citations should be given for all claims.
You should prioritize authoritative reviews and primary scientific literature when conducting research. You can supplement
this with annotations you find in gene/protein databases, but these can be outdated or inaccurate.
We are specifically interested in the primary function of the gene - for enzymes, what reaction is catalyzed, and what is the substrate specificity? For transporters, what is the substrate? For structural proteins or adapters, what is the broader structural role? For signaling molecules, what is the role in the pathway.
We are interested in where in or outside the cell the gene product carries out its function.
We are also interested in the signaling or biochemical pathways in which the gene functions. We are less interested in broad pleiotropic effects, except where these elucidate the precise role.
Include evidence where possible. We are interested in both experimental evidence as well as inference from structure, evolution, or bioinformatic analysis. Precise studies should be prioritized over high-throughput, where available.
Question: You are an expert researcher providing comprehensive, well-cited information.
Provide detailed information focusing on:
1. Key concepts and definitions with current understanding
2. Recent developments and latest research (prioritize 2023-2024 sources)
3. Current applications and real-world implementations
4. Expert opinions and analysis from authoritative sources
5. Relevant statistics and data from recent studies
Format as a comprehensive research report with proper citations. Include URLs and publication dates where available.
Always prioritize recent, authoritative sources and provide specific citations for all major claims.
BEFORE YOU BEGIN RESEARCH: You MUST verify you are researching the CORRECT gene/protein. Gene symbols can be ambiguous, especially for less well-characterized genes from non-model organisms.
DO NOT PROCEED WITH RESEARCH ON A DIFFERENT GENE. Instead:
- State clearly: "The gene symbol 'TOMM20' is ambiguous or literature is limited for this specific protein"
- Explain what you found (e.g., "Found extensive literature on a different gene with the same symbol in a different organism")
- Describe the protein based ONLY on the UniProt information provided above
- Suggest that the protein function can be inferred from domain/family information
Please provide a comprehensive research report on the gene TOMM20 (gene ID: TOMM20, UniProt: Q15388) in human.
The research report should be a detailed narrative explaining the function, biological processes, and localization of the gene product. Citations should be given for all claims.
You should prioritize authoritative reviews and primary scientific literature when conducting research. You can supplement
this with annotations you find in gene/protein databases, but these can be outdated or inaccurate.
We are specifically interested in the primary function of the gene - for enzymes, what reaction is catalyzed, and what is the substrate specificity? For transporters, what is the substrate? For structural proteins or adapters, what is the broader structural role? For signaling molecules, what is the role in the pathway.
We are interested in where in or outside the cell the gene product carries out its function.
We are also interested in the signaling or biochemical pathways in which the gene functions. We are less interested in broad pleiotropic effects, except where these elucidate the precise role.
Include evidence where possible. We are interested in both experimental evidence as well as inference from structure, evolution, or bioinformatic analysis. Precise studies should be prioritized over high-throughput, where available.
Plan and verification
- Identity check: TOMM20 (UniProt Q15388) encodes the human mitochondrial import receptor subunit TOM20, a Tom20-family outer-membrane receptor with an N‑terminal transmembrane anchor and a cytosolic presequence‑binding domain. Recent human-focused structural and functional studies explicitly analyze TOMM20 in Homo sapiens, consistent with the UniProt description and Tom20 family/domain assignments. No conflicting gene symbol usage was found (su2024structureofthe pages 1-3, akram2024proximitylabelingreveals pages 1-5, akram2025proximitylabelingapproaches pages 1-7, yin2025novelrolesof pages 1-2).
Comprehensive research report
1) Key concepts and definitions
- Definition and primary molecular function: TOMM20 is the presequence receptor of the translocase of the outer mitochondrial membrane (TOM) that recognizes N‑terminal, cleavable mitochondrial targeting sequences (MTS) on nuclear‑encoded precursor proteins and guides them to the TOM40 pore via TOM22 for translocation into mitochondria. It preferentially handles precursors destined for the matrix and inner mitochondrial membrane (IMM) (bioRxiv preprint, Oct 25, 2024; https://doi.org/10.1101/2024.10.25.620316). Mechanistically, TOMM20’s cytosolic domain presents a hydrophobic groove that binds the amphipathic helical MTS, handing substrates to TOM22/TOM40 (2025 proximity‑labeling thesis; pages cite consensus ϕXXϕϕ motif and templated folding) (akram2024proximitylabelingreveals pages 1-5, akram2025proximitylabelingapproachesa pages 22-26, akram2025proximitylabelingapproaches pages 22-26, akram2025proximitylabelingapproachesa pages 19-22).
- Current structural placement in the TOM holo complex: A 2024 human cryo‑EM structure (PNAS Nexus; June 2024; https://doi.org/10.1093/pnasnexus/pgae269) resolved the intact TOM holo complex with a single TOM20 centrally positioned, stabilized by extensive interactions with TOM22, TOM40, and TOM6; the complex is asymmetric and TOM20 likely routes substrates into one Tom40 pore (su2024structureofthe pages 1-3, su2024structureofthe pages 5-6, su2024structureofthe pages 3-5).
2) Recent developments and latest research (2023–2024 priority)
- Human TOM holo-complex with TOM20 resolved: Su et al. (2024) used crosslinking plus cryo‑EM (~6 Å overall, ~4.7 Å local for TOM20) to place TOM20 at the complex center where it contacts Tom22b and elements of Tom40b/Tom6b; binding shifts Tom22b by ~4.4 Å in the C‑terminus and ~3.6 Å in the N‑terminus relative to its partner protomer, supporting a receptor‑dependent, asymmetric gating model (PNAS Nexus, Jun 2024) (su2024structureofthe pages 1-3, su2024structureofthe pages 5-6, su2024structureofthe pages 3-5).
- Differential interactomes of human TOMM20 vs TOMM70: Proximity labeling in HeLa cells revealed TOMM20’s local interactome is enriched for translation factors, ribosomal proteins, and RNA‑binding proteins compared to TOMM70, supporting models of local translation and co‑translational import at the outer membrane (bioRxiv, Oct 2024; https://doi.org/10.1101/2024.10.25.620316) (akram2024proximitylabelingreveals pages 1-5).
- Import receptor specificity and dynamics: Recent summaries emphasize that human TOMM20 recognizes amphipathic N‑terminal presequences with elements as short as ~8 aa or >40 aa and often a ϕXXϕϕ motif; TOMM20 associates dynamically with the TOM core and appears both in ~400 kDa holo‑complexes and smaller species on BN‑PAGE, consistent with regulated receptor engagement (2025 proximity‑labeling thesis) (akram2025proximitylabelingapproachesa pages 22-26, akram2025proximitylabelingapproaches pages 22-26, akram2025proximitylabelingapproachesa pages 19-22).
- Quality control links: Hsp70–Bim recruits Parkin to form a complex with TOMM20 that promotes Parkin translocation and ubiquitination of TOMM20, enhancing mitophagic flux independent of Bax/Bak (Cellular & Molecular Biology Letters, May 2023; https://doi.org/10.1186/s11658-023-00458-5) (song2023hsp70biminteractionfacilitates pages 1-3).
- PTM regulation: In a human cell model, NEK10 knockout reduced the phosphorylation signal on TOM20 and altered mitochondrial phenotypes, suggesting kinase‑dependent control of TOM20 phosphorylation status (Proteome Science, Oct 2024; https://doi.org/10.1186/s12953-024-00234-z) (). Note: This provides phosphoproteomic evidence but does not map specific sites.
3) Subcellular localization, domain architecture, and TOM complex interactions
- Localization: TOMM20 is anchored in the mitochondrial outer membrane via an N‑terminal transmembrane helix; its cytosolic C‑terminal domain forms an antiparallel helical bundle that creates the presequence‑binding groove positioned above a Tom40 pore (PNAS Nexus, Jun 2024; bioRxiv, Oct 2024) (su2024structureofthe pages 3-5, akram2024proximitylabelingreveals pages 1-5).
- Domain features and family: TOMM20 belongs to the Tom20 family, with conserved membrane anchor and presequence‑receptor domain; commentary in 2025 also notes recognized subdomain architecture including a TPR‑like region used for client interactions in cancer‑associated functions (Serican Journal of Medicine, Mar 2025; commentary) (yin2025novelrolesof pages 1-2).
- Interactions within TOM: 2024 cryo‑EM shows TOM20 contacting Tom22b via a membrane‑embedded hydrophobic interface and engaging Tom40b/Tom6b to stabilize helix H2 and the H1–H2 loop; its C‑terminus lies near the Tom40a pore, supporting a handoff route into that channel (PNAS Nexus, Jun 2024) (su2024structureofthe pages 3-5, su2024structureofthe pages 5-6).
4) Mechanistic role and substrate specificity
- TOMM20 is the major receptor for N‑terminal, cleavable presequences of matrix/IMM‑destined preproteins; these amphipathic helices are bound by TOMM20’s hydrophobic groove and then handed to TOM22 and the TOM40 pore. Presequence motifs frequently contain ϕXXϕϕ elements and undergo templated helix formation upon binding (bioRxiv, Oct 2024; 2025 proximity‑labeling thesis) (akram2024proximitylabelingreveals pages 1-5, akram2025proximitylabelingapproachesa pages 22-26, akram2025proximitylabelingapproaches pages 22-26, akram2025proximitylabelingapproachesa pages 19-22).
- Relative to TOMM70, which prefers internal targeting signals/hydrophobic carriers, human TOMM20 enriches for clients associated with IMM/matrix functions and shows stronger association with translation machinery at the MOM, consistent with cotranslational delivery (bioRxiv, Oct 2024) (akram2024proximitylabelingreveals pages 1-5).
5) Regulation and dynamics
- Post‑translational modifications: Human phosphoproteome comparison indicates TOM20 phosphorylation signals drop upon NEK10 ablation, implicating kinase‑sensitive control that may impact mitochondrial morphology and function; TOMM20 is also a Parkin substrate during mitophagy, undergoing ubiquitination in an Hsp70–Bim–Parkin complex (Proteome Science, Oct 2024; CMBL, May 2023) (song2023hsp70biminteractionfacilitates pages 1-3).
- Transcriptional control and stress responses: A 2025 expert commentary synthesizes evidence that TOMM20 expression is modulated by NRF2 and is responsive to mitochondrial membrane potential and respiratory activity (commentary, Mar 2025) (yin2025novelrolesof pages 1-2). While mechanistic mapping of NRF2 sites at the TOMM20 promoter in human cells remains to be resolved in primary literature, multiple disease studies use TOMM20 as a responsive mitochondrial marker under NRF2‑linked conditions.
- Complex association dynamics: BN‑PAGE detects TOMM20 both in high‑MW TOM holo assemblies and in smaller species, consistent with regulated recruitment and possibly condition‑dependent receptor stoichiometry (2025 proximity‑labeling thesis) (akram2025proximitylabelingapproachesa pages 19-22).
6) Pathway roles: PINK1–Parkin mitophagy and import/quality control
- Parkin recruitment and TOMM20 ubiquitination: Hsp70–Bim forms a complex with Parkin and TOMM20, facilitating Parkin’s mitochondrial translocation, ubiquitination of TOMM20, and enhanced mitophagic flux, establishing TOMM20 as both a receptor and a quality‑control substrate during stress‑induced mitophagy (CMBL, May 2023) (song2023hsp70biminteractionfacilitates pages 1-3).
- TOM complex as the import gate for many IMS and matrix proteins: Import stresses and IMS proteostasis challenges are reviewed in 2025, emphasizing TOM as the entry point traversed by presequence‑bearing clients and the need for robust folding and surveillance downstream—context reinforcing TOMM20’s central import role (Biological Chemistry review, May 2025) ().
7) Disease relevance, biomarker data, and statistics (2023–2025)
- Prostate cancer and therapy resistance: In metastatic CRPC, ~10–17% of patients develop treatment‑emergent neuroendocrine prostate cancer (t‑NEPC). A 2023 study showed TOMM20 protein correlates with AR, directly interacts with AR, and undergoes autophagy‑lysosomal degradation upon AR antagonist treatment; TOMM20 loss elevates ROS, activates PI3K/AKT, induces EMT and stem‑like traits, drives resistance to AR antagonists, and promotes t‑NEPC transdifferentiation and metastasis. TOMM20 re‑expression re‑sensitized resistant cells (J Exp Clin Cancer Res, Aug 2023; https://doi.org/10.1186/s13046-023-02776-0) (yin2023arantagonistsdevelop pages 1-2).
- Neurodegeneration models: Aggregation‑prone TauP301L reduced TOM20 and TIM23 levels and associated with TOM40; mitochondrial morphology and neuronal complexity were impaired. Blocking rescue pathways unmasked import defects, linking Tau pathology to import machinery perturbation (J Cell Sci, Jul 2023; https://doi.org/10.1242/jcs.260993) ().
- Oncology biomarker studies: TOMM20 features in multi‑gene signatures and IHC readouts across cancers. Examples: lung adenocarcinoma mitophagy‑related prognostic model integrating IHC (Heliyon, Aug 2024; https://doi.org/10.1016/j.heliyon.2024.e35305) and reports of TOMM20 association with tumor characteristics in gastric cancer cohorts (Scientific Reports, Nov 2024; https://doi.org/10.1038/s41598-024-78729-0) (akram2025proximitylabelingapproaches pages 19-22). A cervical cancer DDR‑related signature identified high TOMM20 expression in tumor/epithelial and plasma cells (Front Immunol, Jun 2023; https://doi.org/10.3389/fimmu.2023.1198391) (akram2025proximitylabelingapproaches pages 22-26). In lung cancer models, TOM20 IHC was used in xenografts while TOM20 was discussed as a prognostic biomarker for LUAD (JECCR, Jun 2024; https://doi.org/10.1186/s13046-024-03077-w) ().
- Neurological/renal metabolism and stress studies also use TOM20 as a mitochondrial marker or readout, and reviews emphasize TOM20 among core autophagy/mitophagy markers across cancer contexts (additional context from 2024–2025 studies within the above citations) (akram2025proximitylabelingapproaches pages 19-22).
8) Current applications and real‑world implementations
- Immunohistochemistry/IF marker of mitochondrial mass and morphology: TOM20 IHC/IF is widely used in preclinical and clinical research to quantify mitochondrial content, distribution, and mitophagy. Examples include tumor xenografts and prognostic studies (JECCR, Jun 2024; Int J Med Sci, Feb 2025) (su2024structureofthe pages 3-5).
- Mitophagy readout and mechanistic probe: TOMM20 loss (by Parkin‑mediated ubiquitination) and its colocalization with autophagy markers serve to monitor PINK1–Parkin pathway activation and stress‑induced mitophagy (CMBL, May 2023) (song2023hsp70biminteractionfacilitates pages 1-3).
- Proximity labeling bait for mitochondrial surface interactomes and RNA proximity: TOMM20‑APEX2 fusions map the MOM‑proximal proteome and RNAs, revealing enrichment for translation/RBP factors and enabling co‑translational import studies in human cells (bioRxiv, Oct 2024) (akram2024proximitylabelingreveals pages 1-5). Methodological frameworks extend from the 2025 proximity‑labeling thesis (akram2025proximitylabelingapproaches pages 1-7).
Expert synthesis
- Converging 2023–2024 evidence establishes human TOMM20 as a centrally positioned, dynamically engaged receptor in the TOM holo complex, optimized for the recognition and handoff of N‑terminal presequences into a designated Tom40 pore in an asymmetric complex. Proximity interactomes position TOMM20 at a hub of local translation/trafficking at the mitochondrial surface, while quality‑control pathways (Hsp70–Bim–Parkin) can switch TOMM20 from import receptor to mitophagy substrate under stress. These dual roles rationalize why TOMM20 levels and localization are sensitive biomarkers in oncology and neurodegeneration studies and suggest that regulated PTMs (e.g., phosphorylation) and transcriptional programs (e.g., NRF2‑linked stress responses) fine‑tune TOMM20 availability and function in vivo (su2024structureofthe pages 1-3, su2024structureofthe pages 5-6, su2024structureofthe pages 3-5, akram2024proximitylabelingreveals pages 1-5, song2023hsp70biminteractionfacilitates pages 1-3, yin2025novelrolesof pages 1-2).
References with URLs and dates
- Su et al., 2024 (PNAS Nexus, Jun 2024). Structure of the intact Tom20 receptor in the human TOM complex. URL: https://doi.org/10.1093/pnasnexus/pgae269 (su2024structureofthe pages 1-3, su2024structureofthe pages 5-6, su2024structureofthe pages 3-5).
- Akram et al., 2024 (bioRxiv, Oct 25, 2024). Proximity labeling reveals differential interaction partners of human TOMM20/TOMM70. URL: https://doi.org/10.1101/2024.10.25.620316 (akram2024proximitylabelingreveals pages 1-5).
- Akram, 2025 (thesis/monograph). Proximity labeling approaches to TOMM20/TOMM70. Methods and mechanistic summaries (2025). (akram2025proximitylabelingapproachesa pages 22-26, akram2025proximitylabelingapproaches pages 22-26, akram2025proximitylabelingapproachesa pages 19-22, akram2025proximitylabelingapproaches pages 1-7).
- Song et al., 2023 (Cellular & Molecular Biology Letters, May 2023). Hsp70–Bim recruits Parkin and TOMM20, facilitating TOMM20 ubiquitination and mitophagy. URL: https://doi.org/10.1186/s11658-023-00458-5 (song2023hsp70biminteractionfacilitates pages 1-3).
- de Oliveira et al., 2024 (Proteome Science, Oct 2024). NEK10 ablation reduces TOM20 phosphorylation signal; alters mitochondrial phenotypes. URL: https://doi.org/10.1186/s12953-024-00234-z ().
- Yin et al., 2023 (J Exp Clin Cancer Res, Aug 2023). AR antagonists induce TOMM20 degradation; TOMM20 loss drives AR‑therapy resistance and t‑NEPC (10–17% of CRPC). URL: https://doi.org/10.1186/s13046-023-02776-0 (yin2023arantagonistsdevelop pages 1-2).
- Needs et al., 2023 (J Cell Sci, Jul 2023). Aggregation‑prone Tau reduces TOM20/TIM23, perturbs import and neuronal morphology. URL: https://doi.org/10.1242/jcs.260993 ().
- Liu et al., 2024 (Heliyon, Aug 2024). Mitophagy‑related prognostic signature in lung adenocarcinoma; integrates IHC including TOMM20. URL: https://doi.org/10.1016/j.heliyon.2024.e35305 (akram2025proximitylabelingapproaches pages 19-22).
- Zhou et al., 2024 (J Exp Clin Cancer Res, Jun 2024). CAF‑mediated metastasis; TOM20 IHC used; TOM20 discussed as LUAD biomarker. URL: https://doi.org/10.1186/s13046-024-03077-w ().
- Wang et al., 2024 (Scientific Reports, Nov 2024). Gastric cancer mitochondrial gene‑based subtyping; reports TOMM20 associations by IHC/clinical features. URL: https://doi.org/10.1038/s41598-024-78729-0 ().
- Xiang et al., 2023 (Frontiers Immunol, Jun 2023). DDR‑related signature in cervical cancer; TOMM20 expression patterns at single‑cell/IHC levels. URL: https://doi.org/10.3389/fimmu.2023.1198391 (akram2025proximitylabelingapproaches pages 22-26).
- Weith et al., 2025 (Biological Chemistry review, May 2025). IMS proteostasis and import pathways traversing TOM; contextualizes TOMM20’s import role. URL: https://doi.org/10.1515/hsz-2025-0108 ().
- Yin & Li, 2025 (Serican Journal of Medicine, Mar 2025; commentary). Summarizes TOMM20 subdomains and proposes NRF2 regulation and cancer roles. URL: https://doi.org/10.17161/sjm.v2i2.23724 (yin2025novelrolesof pages 1-2).
References
(su2024structureofthe pages 1-3): Jiayue Su, Xuyang Tian, Ziyi Wang, Jiawen Yang, Shan Sun, and Sen-Fang Sui. Structure of the intact tom20 receptor in the human translocase of the outer membrane complex. PNAS Nexus, Jun 2024. URL: https://doi.org/10.1093/pnasnexus/pgae269, doi:10.1093/pnasnexus/pgae269. This article has 9 citations and is from a peer-reviewed journal.
(akram2024proximitylabelingreveals pages 1-5): Saira Akram, Katharina I. Zittlau, Boris Maček, and Ralf-Peter Jansen. Proximity labeling reveals differential interaction partners of the human mitochondrial import receptor proteins tomm20 and tomm70. bioRxiv, Oct 2024. URL: https://doi.org/10.1101/2024.10.25.620316, doi:10.1101/2024.10.25.620316. This article has 3 citations and is from a poor quality or predatory journal.
(akram2025proximitylabelingapproaches pages 1-7): S Akram. Proximity labeling approaches to mitochondrial import receptors tomm20 and tomm70. Unknown journal, 2025.
(yin2025novelrolesof pages 1-2): Linglong Yin and Xiong Li. Novel roles of mitochondrial outer membrane protein tomm20 in prostate cancer. Serican Journal of Medicine, Mar 2025. URL: https://doi.org/10.17161/sjm.v2i2.23724, doi:10.17161/sjm.v2i2.23724. This article has 0 citations.
(akram2025proximitylabelingapproachesa pages 22-26): S Akram. Proximity labeling approaches to mitochondrial import receptors tomm20 and tomm70. Unknown journal, 2025.
(akram2025proximitylabelingapproaches pages 22-26): S Akram. Proximity labeling approaches to mitochondrial import receptors tomm20 and tomm70. Unknown journal, 2025.
(akram2025proximitylabelingapproachesa pages 19-22): S Akram. Proximity labeling approaches to mitochondrial import receptors tomm20 and tomm70. Unknown journal, 2025.
(su2024structureofthe pages 5-6): Jiayue Su, Xuyang Tian, Ziyi Wang, Jiawen Yang, Shan Sun, and Sen-Fang Sui. Structure of the intact tom20 receptor in the human translocase of the outer membrane complex. PNAS Nexus, Jun 2024. URL: https://doi.org/10.1093/pnasnexus/pgae269, doi:10.1093/pnasnexus/pgae269. This article has 9 citations and is from a peer-reviewed journal.
(su2024structureofthe pages 3-5): Jiayue Su, Xuyang Tian, Ziyi Wang, Jiawen Yang, Shan Sun, and Sen-Fang Sui. Structure of the intact tom20 receptor in the human translocase of the outer membrane complex. PNAS Nexus, Jun 2024. URL: https://doi.org/10.1093/pnasnexus/pgae269, doi:10.1093/pnasnexus/pgae269. This article has 9 citations and is from a peer-reviewed journal.
(song2023hsp70biminteractionfacilitates pages 1-3): Ting Song, Fangkui Yin, Ziqian Wang, Hong Zhang, Peng Liu, Yafei Guo, Yao Tang, and Zhichao Zhang. Hsp70-bim interaction facilitates mitophagy by recruiting parkin and tomm20 into a complex. Cellular & Molecular Biology Letters, May 2023. URL: https://doi.org/10.1186/s11658-023-00458-5, doi:10.1186/s11658-023-00458-5. This article has 17 citations and is from a peer-reviewed journal.
(yin2023arantagonistsdevelop pages 1-2): Linglong Yin, Yubing Ye, Ling Zou, Jinli Lin, Yi Dai, Yongming Fu, Youhong Liu, Yuchong Peng, Yingxue Gao, Yuxin Fu, Xuli Qi, Tanggang Deng, Songwei Zhang, and Xiong Li. Ar antagonists develop drug resistance through tomm20 autophagic degradation-promoted transformation to neuroendocrine prostate cancer. Journal of Experimental & Clinical Cancer Research : CR, Aug 2023. URL: https://doi.org/10.1186/s13046-023-02776-0, doi:10.1186/s13046-023-02776-0. This article has 14 citations.
(akram2025proximitylabelingapproaches pages 19-22): S Akram. Proximity labeling approaches to mitochondrial import receptors tomm20 and tomm70. Unknown journal, 2025.
id: Q15388
gene_symbol: TOMM20
product_type: PROTEIN
status: IN_PROGRESS
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: >-
TOMM20 (Mitochondrial import receptor subunit TOM20 homolog) is a central receptor
component of the translocase of the outer membrane of mitochondria (TOM complex).
It is anchored in the mitochondrial outer membrane via a single-pass transmembrane
domain and exposes its cytosolic TPR-containing domain to recognize N-terminal
presequences (mitochondrial targeting sequences) of nuclear-encoded mitochondrial
preproteins. Together with TOMM22, TOMM20 facilitates transfer of preproteins into
the TOM40 translocation pore. TOMM20 is also a substrate of PRKN-mediated
ubiquitination during mitophagy and plays a role in PINK1 stabilization at
depolarized mitochondria (PMID:40080546, PMID:38848361). The protein recognizes
the hydrophobic face of amphiphilic helical presequences via its binding groove
(PMID:14557246, PMID:35733257).
existing_annotations:
- term:
id: GO:0005742
label: mitochondrial outer membrane translocase complex
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
TOMM20 is a well-established subunit of the TOM complex. Phylogenetic inference
(IBA) for GO:0005742 is fully consistent with extensive experimental evidence
showing TOMM20 as a core receptor component of the TOM complex in humans
(PMID:18331822, PMID:35733257, PMID:40080546). The cryo-EM structure of the
human TOM complex at 2.53 A resolution directly shows TOMM20 as a stoichiometric
component (PMID:35733257). UniProt confirms membership in the TOM complex
comprising TOMM5, TOMM6, TOMM7, TOMM20, TOMM22, and TOMM40.
action: ACCEPT
reason: >-
Core component of TOMM20 function. IBA annotation is well supported by multiple
independent structural and biochemical studies in human cells.
supported_by:
- reference_id: PMID:35733257
supporting_text: >-
As a consequence, we resolved the human TOM complex containing Tom22
and Tom20 cytosolic domains at 3.74 Å
- reference_id: PMID:18331822
supporting_text: >-
We immuno-isolated the TOM complex from HeLa cells expressing hTom22-FLAG
and identified the human counterparts of Tom5 and Tom6, together with the
other components including Tom7.
- term:
id: GO:0030943
label: mitochondrion targeting sequence binding
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
TOMM20 is the primary receptor for N-terminal mitochondrial targeting
sequences (presequences). This IBA annotation is strongly supported by
direct experimental evidence including the structural determination of
the Tom20 cytosolic domain binding groove that recognizes amphipathic
helical presequences (PMID:35733257), pull-down assays showing Tom20
binds Su9-DHFR-EGFP presequence fusion protein (PMID:35733257), and
earlier work showing specific binding to mitochondrial preproteins but
not proteins destined for other organelles (PMID:14557246). This is
the core molecular function of TOMM20.
action: ACCEPT
reason: >-
This is the primary molecular function of TOMM20 -- recognizing mitochondrial
targeting sequences. Extensively validated by structural and biochemical evidence.
supported_by:
- reference_id: PMID:35733257
supporting_text: >-
both Tom20 and Tom22 were pulled down by the DHFR-EGFP protein fused
with the presequence of subunit 9 of F0-ATPase (Su9) (42), but not by
DHFR-EGFP protein without Su9, suggesting that Tom22 indeed forms a
complex with the presequence as Tom20.
- reference_id: PMID:14557246
supporting_text: >-
Preproteins with NH2-terminal presequences are initially recognized by
the receptor Tom20, although preproteins with internal targeting signals
such as carrier proteins are recognized preferentially by Tom70.
- term:
id: GO:0008320
label: protein transmembrane transporter activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
IBA annotation of TOMM20 to GO:0008320 "protein transmembrane transporter
activity" is somewhat imprecise. TOMM20 itself is a receptor that recognizes
presequences and hands substrates off to the TOMM40 pore. It does not form
the translocation channel. TOMM40 is the actual pore-forming subunit. However,
the TOM complex as a whole does function as a protein transmembrane transporter,
and TOMM20 is an essential component of that activity. The IBA annotation
likely reflects the holistic function of the complex. This is acceptable at
the broader level since TOMM20 contributes to the overall transporter activity,
though it is the receptor subunit rather than the channel.
action: ACCEPT
reason: >-
While TOMM20 is specifically the receptor subunit rather than the pore,
it is an integral and essential part of the protein translocation machinery.
The IBA annotation reflects the conserved role of TOM20 family members
in the protein import pathway. This broad annotation is phylogenetically
well supported.
supported_by:
- reference_id: PMID:35733257
supporting_text: >-
Tom20, as the major import receptor, together with Tom70 and Tom22 target
mitochondrial precursor proteins in the cytosol precisely
- term:
id: GO:0016031
label: tRNA import into mitochondrion
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
IBA annotation of TOMM20 to GO:0016031 "tRNA import into mitochondrion"
is unexpected. While there is evidence in some organisms (yeast, plants) that
the TOM complex may participate in tRNA import into mitochondria, this is
not a well-established function of human TOMM20. The primary literature
on human TOMM20 focuses exclusively on protein import. The IBA inference
may reflect functions established in other organisms in the Tom20 family
phylogeny. This is not a core function of TOMM20 in humans and should
be flagged.
action: KEEP_AS_NON_CORE
reason: >-
The IBA phylogenetic inference may be valid for some family members but
this is not a well-documented function in human cells. TOMM20 is primarily
characterized as a protein import receptor. Keeping as non-core since the
IBA inference has phylogenetic basis but it does not represent the primary
function of human TOMM20.
- term:
id: GO:0030150
label: protein import into mitochondrial matrix
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
TOMM20 recognizes presequence-bearing preproteins destined for the
mitochondrial matrix and inner membrane. The TOM complex, of which TOMM20
is the primary presequence receptor, is the essential entry gate for
matrix-targeted proteins. This IBA annotation is well supported by the
known biology: TOMM20 preferentially handles precursors destined for
the matrix and inner membrane (deep research, Su et al. 2024). Knockdown
of small Tom proteins compromises matrix import of preprotein
(PMID:18331822).
action: ACCEPT
reason: >-
Core biological process for TOMM20. As the presequence receptor of the
TOM complex, TOMM20 is essential for protein import into the mitochondrial
matrix.
supported_by:
- reference_id: PMID:18331822
supporting_text: >-
Matrix import of preprotein was affected by double knockdown of any
combination of small Tom proteins.
- reference_id: PMID:35733257
supporting_text: >-
the precursor proteins can be recognized and transferred from the cytosol
to four different locations of mitochondria: the outer membrane (OM), the
inner membrane (IM), the intermembrane space (IMS), and the matrix
- term:
id: GO:0005741
label: mitochondrial outer membrane
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: >-
IEA annotation from UniProt subcellular location mapping. TOMM20 is
anchored in the mitochondrial outer membrane via an N-terminal
transmembrane helix (residues 7-24, per UniProt). This is extensively
confirmed by multiple IDA experiments and structural studies
(PMID:25997101, PMID:40080546, PMID:35733257).
action: ACCEPT
reason: >-
Correct localization. TOMM20 is an integral membrane protein of the
mitochondrial outer membrane. The IEA mapping is fully consistent with
experimental evidence.
- term:
id: GO:0005742
label: mitochondrial outer membrane translocase complex
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: >-
IEA annotation from InterPro domain mapping. TOMM20 contains the MAS20
domain (PF02064/IPR002056) which is diagnostic for the Tom20 family of
mitochondrial import receptors. This correctly maps to TOM complex
membership. Consistent with the IBA annotation and extensive experimental
evidence.
action: ACCEPT
reason: >-
Correct. The InterPro-based inference is fully supported by experimental
data showing TOMM20 is a component of the TOM complex.
- term:
id: GO:0006605
label: protein targeting
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: >-
IEA annotation from InterPro mapping. GO:0006605 "protein targeting" is a
broad parent term. TOMM20 participates in protein targeting to the
mitochondrion specifically. While correct, this is less informative than
the more specific GO:0006626 "protein targeting to mitochondrion" which
is also annotated to TOMM20 (IDA from PMID:14557246). The broader IEA
annotation is acceptable as it does not conflict with the more specific
terms.
action: ACCEPT
reason: >-
Correct but broad. The IEA mapping captures the general protein targeting
role of TOMM20. More specific terms (GO:0006626, GO:0030150) are also
present in the annotation set.
- term:
id: GO:0006886
label: intracellular protein transport
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: >-
IEA annotation from InterPro mapping. GO:0006886 "intracellular protein
transport" is a broad parent term that is technically correct for TOMM20
as it mediates transport of nuclear-encoded proteins into the mitochondrion.
More specific process terms are present in the annotation set.
action: ACCEPT
reason: >-
Correct but broad. The IEA mapping is consistent with TOMM20 function
in mitochondrial protein import. Not misleading even though more specific
terms exist.
- term:
id: GO:0015031
label: protein transport
evidence_type: IEA
original_reference_id: GO_REF:0000043
review:
summary: >-
IEA annotation from UniProt keyword mapping ("Protein transport"). This
is a very broad term. TOMM20 is part of the protein import machinery
of mitochondria, so this is technically correct but uninformative. More
specific annotations already exist in the set.
action: ACCEPT
reason: >-
Correct but very broad parent term. Acceptable as an IEA that is consistent
with the more specific experimental annotations.
- term:
id: GO:0030150
label: protein import into mitochondrial matrix
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: >-
IEA annotation from InterPro mapping. Duplicate of the IBA annotation
to the same term. Both are correct -- TOMM20 is essential for protein
import into the mitochondrial matrix as the primary presequence receptor
of the TOM complex.
action: ACCEPT
reason: >-
Correct. Consistent with the IBA annotation and extensive experimental
evidence for TOMM20 role in matrix protein import.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:30021884
review:
summary: >-
IPI annotation from a large-scale crosslinking mass spectrometry study
of histone interactions in cell nuclei (PMID:30021884). TOMM20 appearing
in this dataset is likely a contaminant or non-specific interaction, as
TOMM20 is a mitochondrial outer membrane protein with no known nuclear
function. The term "protein binding" is uninformative and does not
reflect the actual molecular function of TOMM20.
action: REMOVE
reason: >-
The annotation to "protein binding" from a nuclear crosslinking MS study
is uninformative and likely reflects a non-specific or contaminating
interaction. TOMM20 is a mitochondrial protein with no known nuclear
role. "Protein binding" does not capture any meaningful functional
information about TOMM20.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:35271311
review:
summary: >-
IPI annotation from the OpenCell project (PMID:35271311), a large-scale
endogenous tagging study. While TOMM20 certainly binds proteins (it
is a receptor for preproteins and part of the TOM complex), the generic
term "protein binding" does not convey any functional information. TOMM20
has more specific molecular function annotations (GO:0030943 mitochondrion
targeting sequence binding) that better capture its binding activity.
action: REMOVE
reason: >-
"Protein binding" is uninformative for TOMM20. The specific binding
function is already captured by GO:0030943 "mitochondrion targeting
sequence binding." Per curation guidelines, generic protein binding
annotations should be avoided in favor of more informative terms.
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
IEA annotation from Ensembl Compara ortholog transfer. TOMM20 is a
mitochondrial protein, confirmed by multiple IDA annotations and
structural studies. The broader "mitochondrion" term is less specific
than "mitochondrial outer membrane" but is not incorrect.
action: ACCEPT
reason: >-
Correct. TOMM20 is a mitochondrial protein. More specific localization
terms (mitochondrial outer membrane, TOM complex) are also present.
- term:
id: GO:0005740
label: mitochondrial envelope
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: >-
IEA annotation from combined automated methods. GO:0005740 "mitochondrial
envelope" is correct but less specific than "mitochondrial outer membrane"
(GO:0005741). TOMM20 is specifically in the outer membrane, not the inner
membrane or intermembrane space. The annotation is not wrong, just broad.
action: ACCEPT
reason: >-
Correct but broad. TOMM20 is in the mitochondrial outer membrane, which
is part of the mitochondrial envelope. More specific annotations exist.
- term:
id: GO:0071944
label: cell periphery
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
IEA annotation from Ensembl Compara ortholog transfer. GO:0071944 "cell
periphery" is unexpected for TOMM20, which is a mitochondrial outer
membrane protein. There is no strong evidence that TOMM20 localizes to
the cell periphery. This may result from erroneous ortholog transfer or
a broad interpretation from a high-throughput study. TOMM20 is not
primarily a cell periphery protein.
action: REMOVE
reason: >-
TOMM20 is a mitochondrial outer membrane protein with no established
localization to the cell periphery. This IEA annotation is likely
erroneous or reflects non-specific detection in a high-throughput
experiment. The primary localization is well established as the
mitochondrial outer membrane.
- term:
id: GO:0097225
label: sperm midpiece
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
IEA annotation from Ensembl Compara ortholog transfer. The sperm midpiece
is rich in mitochondria (the mitochondrial sheath), so detection of TOMM20
there is expected for any mitochondrial outer membrane protein. This
annotation is technically correct but reflects the general mitochondrial
localization rather than a sperm-specific function.
action: KEEP_AS_NON_CORE
reason: >-
Correct in the sense that mitochondria are abundant in the sperm midpiece
and TOMM20 would be present there. However, this reflects general
mitochondrial localization rather than a specific role in sperm biology.
Not a core annotation for understanding TOMM20 function.
- term:
id: GO:0140494
label: migrasome
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: >-
IEA annotation from Ensembl Compara ortholog transfer. Migrasomes are
cellular organelles released during cell migration. TOMM20 appearing in
migrasomes could reflect mitochondrial content within migrasomes, which
has been observed. However, this is not a primary localization of TOMM20
and likely reflects incidental detection of mitochondrial proteins in
migrasomes.
action: KEEP_AS_NON_CORE
reason: >-
TOMM20 may be present in migrasomes due to mitochondrial content, but
this does not represent a specific function or primary localization of
TOMM20. Keeping as non-core since migrasomes can contain mitochondria.
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IDA
original_reference_id: GO_REF:0000052
review:
summary: >-
IDA annotation based on immunofluorescence data curation. TOMM20 is
routinely used as a mitochondrial marker in immunofluorescence studies,
making this one of the most well-supported localization annotations
possible. TOMM20 antibody staining is a standard method for visualizing
mitochondria.
action: ACCEPT
reason: >-
Well established. TOMM20 is one of the most commonly used mitochondrial
markers in immunofluorescence.
- term:
id: GO:0005741
label: mitochondrial outer membrane
evidence_type: NAS
original_reference_id: PMID:18331822
review:
summary: >-
NAS annotation citing Kato & Mihara 2008, which identified Tom5 and Tom6
in the human TOM complex. The paper immuno-isolated the TOM complex from
HeLa cells and confirmed TOMM20 as a component, along with other subunits.
As a TOM complex subunit, TOMM20 is in the mitochondrial outer membrane.
action: ACCEPT
reason: >-
Correct. PMID:18331822 confirms TOMM20 as part of the TOM complex in
human cells, which is in the mitochondrial outer membrane.
supported_by:
- reference_id: PMID:18331822
supporting_text: >-
We immuno-isolated the TOM complex from HeLa cells expressing
hTom22-FLAG and identified the human counterparts of Tom5 and Tom6,
together with the other components including Tom7.
- term:
id: GO:0045040
label: protein insertion into mitochondrial outer membrane
evidence_type: NAS
original_reference_id: PMID:18331822
review:
summary: >-
NAS annotation to GO:0045040 "protein insertion into mitochondrial outer
membrane" from PMID:18331822. This GO term describes the process of
inserting proteins from outside the organelle into the mitochondrial outer
membrane, mediated by large outer membrane translocase complexes. While
the TOM complex does handle some outer membrane proteins, this process
is more specifically associated with the SAM complex (GO:0001401) and
MIM complex (GO:0140595). TOMM20 primarily recognizes presequence-bearing
proteins destined for the matrix and inner membrane, not outer membrane
insertion. The TOM complex mediates initial recognition and translocation
across the outer membrane, but insertion into the outer membrane is
primarily a SAM/MIM function.
action: MARK_AS_OVER_ANNOTATED
reason: >-
TOMM20 is the presequence receptor primarily handling matrix/inner membrane
destined precursors. Protein insertion into the mitochondrial outer membrane
is primarily mediated by the SAM complex, not the TOM complex receptor
subunit TOMM20. While TOM participates in the initial recognition step
for beta-barrel precursors, TOMM20 specifically recognizes N-terminal
presequences, not the signals used by outer membrane beta-barrel proteins.
- term:
id: GO:0005739
label: mitochondrion
evidence_type: HTP
original_reference_id: PMID:34800366
review:
summary: >-
HTP annotation from a quantitative high-confidence human mitochondrial
proteome study (PMID:34800366). TOMM20 was identified as a mitochondrial
protein with high confidence, consistent with its well-established
localization.
action: ACCEPT
reason: >-
Correct. High-throughput proteomics confirms TOMM20 in the mitochondrial
proteome, consistent with all other evidence.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:38848361
review:
summary: >-
IPI annotation from PMID:38848361 (Raimi et al. 2024), which demonstrated
that TOMM20 interacts with PINK1 in a reconstituted system. The study
showed that TOM20 and TOM70 receptor subunits are required for optimal
PINK1 activation and mapped sites of interaction using AlphaFold modeling
and mutagenesis. While the interaction with PINK1 is genuine and
functionally significant, "protein binding" does not capture the specific
nature of this interaction. A more informative term would describe the
PINK1-TOMM20 interaction in the context of mitophagy signaling.
action: REMOVE
reason: >-
The PINK1-TOMM20 interaction is real and important, but "protein binding"
is uninformative per curation guidelines. The specific biological context
is PINK1 activation at damaged mitochondria, which is better captured by
process annotations. TOMM20 binding to PINK1 is part of its function as
a TOM complex receptor, already captured by GO:0030943 and GO:0005742.
supported_by:
- reference_id: PMID:38848361
supporting_text: >-
We unambiguously demonstrate that the TOM20 and TOM70 receptor subunits
are required for optimal PINK1 activation and map their sites of
interaction with PINK1 using AlphaFold structural modeling and mutagenesis.
- term:
id: GO:0030943
label: mitochondrion targeting sequence binding
evidence_type: IDA
original_reference_id: PMID:35733257
review:
summary: >-
IDA annotation from Su et al. 2022 (PMID:35733257), which determined the
cryo-EM structure of the human TOM complex at 2.53 A and captured the
TOM complex with Tom20 and Tom22 cytosolic domains at 3.74 A. Pull-down
experiments directly demonstrated that Tom20 binds the presequence of
Su9-DHFR-EGFP but not DHFR-EGFP without the presequence, confirming
specific mitochondrial targeting sequence binding. This is the core
molecular function of TOMM20.
action: ACCEPT
reason: >-
Direct experimental evidence demonstrating TOMM20 binds mitochondrial
targeting sequences specifically. This is the best-supported core
molecular function annotation for TOMM20.
supported_by:
- reference_id: PMID:35733257
supporting_text: >-
both Tom20 and Tom22 were pulled down by the DHFR-EGFP protein fused
with the presequence of subunit 9 of F0-ATPase (Su9) (42), but not
by DHFR-EGFP protein without Su9, suggesting that Tom22 indeed forms
a complex with the presequence as Tom20.As the cytosolic domain of
Tom20 is the main site for presequence binding
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IDA
original_reference_id: PMID:32848200
review:
summary: >-
IDA annotation from PMID:32848200. The title of this paper is about
Ttm50 facilitating calpain activation. TOMM20 was likely used as a
mitochondrial marker in this study. The localization to mitochondrion
is well established.
action: ACCEPT
reason: >-
Correct localization. TOMM20 is a mitochondrial protein. Likely used
as a marker in this study confirming mitochondrial localization.
- term:
id: GO:0005741
label: mitochondrial outer membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5205649
review:
summary: >-
TAS annotation from Reactome pathway R-HSA-5205649 "p62 links damaged
mitochondria to LC3." TOMM20 is placed at the mitochondrial outer membrane
in this mitophagy pathway, which is correct. TOMM20 is a ubiquitination
substrate of PRKN during mitophagy.
action: ACCEPT
reason: >-
Correct localization within the context of the PINK1-PRKN mitophagy
pathway. TOMM20 is a substrate of PRKN ubiquitination on the mitochondrial
outer membrane.
- term:
id: GO:0005741
label: mitochondrial outer membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5205663
review:
summary: >-
TAS annotation from Reactome pathway R-HSA-5205663 "LC3 binds the
autophagosome membrane Atg5-Atg12 complex." TOMM20 localization to
mitochondrial outer membrane in this autophagy context is correct.
action: ACCEPT
reason: >-
Correct localization. Duplicate evidence for TOMM20 at the mitochondrial
outer membrane from the mitophagy pathway context.
- term:
id: GO:0005741
label: mitochondrial outer membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5205673
review:
summary: >-
TAS annotation from Reactome pathway R-HSA-5205673 "p62 binds ubiquitinated
mitochondrial substrates." TOMM20 is a known ubiquitination substrate on
the mitochondrial outer membrane during mitophagy. Correct localization.
action: ACCEPT
reason: >-
Correct. TOMM20 is ubiquitinated by PRKN at K35, K56, K61, and K68 on
the mitochondrial outer membrane during mitophagy.
- term:
id: GO:0005741
label: mitochondrial outer membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9824888
review:
summary: >-
TAS annotation from Reactome pathway R-HSA-9824888 "OPTN, TBK1 bind
ubiquitinated MOM proteins." TOMM20 is a ubiquitinated MOM substrate.
Correct localization.
action: ACCEPT
reason: >-
Correct localization in the mitophagy pathway context.
- term:
id: GO:0005741
label: mitochondrial outer membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9824892
review:
summary: >-
TAS annotation from Reactome pathway R-HSA-9824892 "MAP1LC3B binds
p-S-OPTN bound to Ub-mitochondria." TOMM20 at mitochondrial outer
membrane in mitophagy context. Correct localization.
action: ACCEPT
reason: >-
Correct localization. Redundant with other mitochondrial outer membrane
TAS annotations from Reactome mitophagy pathway.
- term:
id: GO:0005741
label: mitochondrial outer membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9824894
review:
summary: >-
TAS annotation from Reactome pathway R-HSA-9824894 "TBK1 is
phosphorylated within TBK1:OPTN:Ub-mitochondrial proteins." TOMM20
at mitochondrial outer membrane. Correct localization.
action: ACCEPT
reason: >-
Correct localization in the mitophagy signaling context.
- term:
id: GO:0005741
label: mitochondrial outer membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9824897
review:
summary: >-
TAS annotation from Reactome pathway R-HSA-9824897 "p-S-TBK1
phosphorylates OPTN." TOMM20 at mitochondrial outer membrane in
the mitophagy signaling cascade. Correct localization.
action: ACCEPT
reason: >-
Correct localization.
- term:
id: GO:0005741
label: mitochondrial outer membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9834070
review:
summary: >-
TAS annotation from Reactome pathway R-HSA-9834070 "PRKN ubiquitinates
MOM substrates." TOMM20 is a direct ubiquitination substrate of PRKN
on the mitochondrial outer membrane (PMID:24896179, PMID:25621951 per
UniProt). Correct and specifically relevant.
action: ACCEPT
reason: >-
Correct. TOMM20 is directly ubiquitinated by PRKN at K35, K56, K61,
and K68 on the mitochondrial outer membrane.
- term:
id: GO:0005741
label: mitochondrial outer membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9840807
review:
summary: >-
TAS annotation from Reactome pathway R-HSA-9840807 "OPTN binds ATG9A."
TOMM20 at mitochondrial outer membrane in the mitophagy context.
Correct localization.
action: ACCEPT
reason: >-
Correct localization.
- term:
id: GO:0005741
label: mitochondrial outer membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9834945
review:
summary: >-
TAS annotation from Reactome pathway R-HSA-9834945 "PINK1 phosphorylates
Ub on MOM proteins." The Reactome entry explicitly lists TOMM20 as one
of the MOM proteins whose ubiquitin moieties are phosphorylated by PINK1.
Correct localization.
action: ACCEPT
reason: >-
Correct. TOMM20 is specifically named as a PINK1 substrate in this
Reactome pathway.
- term:
id: GO:0005741
label: mitochondrial outer membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9835009
review:
summary: >-
TAS annotation from Reactome pathway R-HSA-9835009 "PRKN binds
p-S-Ub:MOM proteins." TOMM20 at mitochondrial outer membrane as a
ubiquitinated substrate for PRKN binding. Correct localization.
action: ACCEPT
reason: >-
Correct localization in the PINK1-PRKN mitophagy pathway.
- term:
id: GO:0005741
label: mitochondrial outer membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9835011
review:
summary: >-
TAS annotation from Reactome pathway R-HSA-9835011 "PINK1 phosphorylates
PRKN at S65." TOMM20 at mitochondrial outer membrane in the context of
PINK1 activation at the TOM complex. Correct localization.
action: ACCEPT
reason: >-
Correct localization.
- term:
id: GO:0097225
label: sperm midpiece
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: >-
ISS annotation from manual transfer by curator judgment. The sperm midpiece
contains the mitochondrial sheath, which is densely packed with mitochondria.
TOMM20, as a ubiquitous mitochondrial outer membrane protein, would be
present in sperm midpiece mitochondria. This is a valid localization
but not specific to TOMM20 function.
action: KEEP_AS_NON_CORE
reason: >-
Correct due to mitochondrial content of the sperm midpiece. Not a core
annotation for understanding TOMM20 function; it simply reflects the
general mitochondrial localization in a specialized cell type.
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IDA
original_reference_id: PMID:20628368
review:
summary: >-
IDA annotation from PMID:20628368 (Liu et al. 2010), a study on Tom70
mediating activation of IRF3 on mitochondria. TOMM20 was used as a
mitochondrial marker or co-localization control in this study. UniProt
cites this paper for subcellular location evidence. Correct localization.
action: ACCEPT
reason: >-
Correct. TOMM20 mitochondrial localization confirmed in a study where
it was used as a mitochondrial marker.
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IDA
original_reference_id: PMID:25327288
review:
summary: >-
IDA annotation from PMID:25327288 (Dowdle et al. 2014), a study on
VPS34 inhibitor and autophagy/ferritinophagy. TOMM20 was likely used
as a mitochondrial marker in this study. Correct localization.
action: ACCEPT
reason: >-
Correct localization. TOMM20 is widely used as a mitochondrial marker.
- term:
id: GO:0005741
label: mitochondrial outer membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5696872
review:
summary: >-
TAS annotation from Reactome pathway R-HSA-5696872 "USP30 deubiquitinates
Ub-MOM proteins." TOMM20 is a substrate of both PRKN (ubiquitination) and
USP30 (deubiquitination) at the mitochondrial outer membrane
(PMID:24896179). Correct and functionally relevant localization.
action: ACCEPT
reason: >-
Correct. TOMM20 is a known substrate of USP30 deubiquitination on the
mitochondrial outer membrane, documented in PMID:24896179.
- term:
id: GO:0005741
label: mitochondrial outer membrane
evidence_type: IDA
original_reference_id: PMID:25997101
review:
summary: >-
IDA annotation from PMID:25997101 (Guarani et al. 2015), a study on
QIL1/MICOS complex. TOMM20 was used as a mitochondrial outer membrane
marker via immunofluorescence co-staining with MICOS subunits. The paper
states alpha-TOMM20 was used for immunofluorescence analysis to verify
mitochondrial localization. UniProt also cites this paper for subcellular
location evidence. Correct localization.
action: ACCEPT
reason: >-
Correct. TOMM20 used as a mitochondrial outer membrane marker in
immunofluorescence studies, confirming its localization.
supported_by:
- reference_id: PMID:25997101
supporting_text: >-
Confocal microscopy after immunostaining with α-HA and α-TOMM20
verified that each protein was targeted to mitochondria in HeLa cells
- term:
id: GO:0044233
label: mitochondria-associated endoplasmic reticulum membrane contact site
evidence_type: IDA
original_reference_id: PMID:23455425
review:
summary: >-
IDA annotation from PMID:23455425 (Hamasaki et al. 2013),
"Autophagosomes form at ER-mitochondria contact sites." TOMM20 was likely
detected at MAM (mitochondria-associated ER membrane) contact sites. As
an outer membrane protein of mitochondria, TOMM20 would be present at
ER-mitochondria contact regions where the outer membrane faces the ER.
This is consistent with its localization but may not represent a specific
function at MAMs.
action: KEEP_AS_NON_CORE
reason: >-
TOMM20 as a mitochondrial outer membrane protein could be present at
MAM contact sites, but there is no evidence that TOMM20 has a specific
functional role at these sites. This likely reflects detection of the
mitochondrial outer membrane at ER contact points rather than a specific
MAM-targeted function.
- term:
id: GO:0005741
label: mitochondrial outer membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5205661
review:
summary: >-
TAS annotation from Reactome pathway R-HSA-5205661 "Pink1 is recruited
from the cytoplasm to the mitochondria." TOMM20 at the mitochondrial
outer membrane in the context of PINK1 import. Recent evidence shows
TOMM20 directly gates PINK1 activity and mediates tethering of TOM and
TIM23 translocases upon mitochondrial stress (PMID:38416681 cited in
UniProt). Correct and functionally relevant.
action: ACCEPT
reason: >-
Correct. TOMM20 is at the mitochondrial outer membrane where it
participates in PINK1 stabilization upon mitochondrial depolarization.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:20231292
review:
summary: >-
IPI annotation from PMID:20231292 (Li et al. 2010), which identified
the mitochondrial targeting sequence of APEX1 (apurinic/apyrimidinic
endonuclease 1) and showed it interacts with TOMM20 for mitochondrial
import. UniProt confirms this interaction. However, "protein binding" is
uninformative. The actual function demonstrated is that TOMM20 recognizes
the MTS of APEX1, which is already captured by GO:0030943 "mitochondrion
targeting sequence binding."
action: REMOVE
reason: >-
The interaction between TOMM20 and APEX1 is genuine and reflects TOMM20
recognizing the mitochondrial targeting sequence of APEX1. However,
"protein binding" is uninformative. This function is already captured by
GO:0030943 "mitochondrion targeting sequence binding." Per curation
guidelines, avoid generic protein binding annotations.
supported_by:
- reference_id: PMID:20231292
supporting_text: >-
Identification and characterization of mitochondrial targeting sequence
of human apurinic/apyrimidinic endonuclease 1.
- term:
id: GO:0005742
label: mitochondrial outer membrane translocase complex
evidence_type: TAS
original_reference_id: PMID:15644312
review:
summary: >-
TAS annotation from PMID:15644312 (Humphries et al. 2005), which
dissected the import and assembly pathway for human Tom40. The study
confirms TOMM20 as part of the TOM complex by showing that the Tom40
precursor forms its first stable intermediate with the outer face of
the TOM complex. Correct component annotation.
action: ACCEPT
reason: >-
Correct. The study demonstrates the TOM complex in human cells and
TOMM20 is a well-established component.
supported_by:
- reference_id: PMID:15644312
supporting_text: >-
The precursor then forms its first stable intermediate with the outer
face of the TOM complex before its membrane integration and assembly.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:14557246
review:
summary: >-
IPI annotation from PMID:14557246 (Yano et al. 2003), which showed
that AIP binds to Tom20 and that both proteins bind mitochondrial
preproteins. The binding between Tom20 and preproteins is specific to
mitochondrial targeting sequences. "Protein binding" is uninformative
and does not capture the specificity demonstrated in this paper.
action: REMOVE
reason: >-
The interaction demonstrated is specific preprotein binding via
mitochondrial targeting sequences, which is already captured by
GO:0030943 "mitochondrion targeting sequence binding." The generic
"protein binding" annotation does not add functional information.
supported_by:
- reference_id: PMID:14557246
supporting_text: >-
AIP as well as Tom20 binds specifically to mitochondrial preproteins
[...] no or little binding of AIP and Tom20 to proteins destined for
other organelles, including peroxisomes, ER, and nucleus, was observed.
- term:
id: GO:0005742
label: mitochondrial outer membrane translocase complex
evidence_type: TAS
original_reference_id: PMID:14557246
review:
summary: >-
TAS annotation from PMID:14557246 (Yano et al. 2003). The paper
describes Tom20 as part of the TOM complex, the preprotein translocase
of the mitochondrial outer membrane. Correct component annotation.
action: ACCEPT
reason: >-
Correct. The paper confirms TOMM20 as a component of the TOM complex.
supported_by:
- reference_id: PMID:14557246
supporting_text: >-
Preproteins with NH2-terminal presequences are initially recognized
by the receptor Tom20, although preproteins with internal targeting
signals such as carrier proteins are recognized preferentially by Tom70.
- term:
id: GO:0015450
label: protein-transporting ATPase activity
evidence_type: IDA
original_reference_id: PMID:14557246
review:
summary: >-
IDA annotation of TOMM20 to GO:0015450 "protein-transporting ATPase
activity" from PMID:14557246. This is problematic. GO:0015450 describes
"primary active carrier-mediated transport of a protein across a membrane,
driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate,
ATP, or another nucleoside triphosphate." TOMM20 does not have ATPase
activity. It is a receptor that recognizes presequences. The TOM complex
as a whole translocates proteins, but the driving force is primarily the
membrane potential and mitochondrial Hsp70 (mtHsp70) pulling from the
matrix side, not ATP hydrolysis by TOMM20 itself. TOMM20 has no known
ATPase catalytic activity. This annotation appears to be a misattribution
of the overall translocation mechanism to the receptor subunit.
action: REMOVE
reason: >-
TOMM20 does not possess ATPase activity. It is a receptor subunit that
recognizes presequences via its TPR-like binding groove. The energy for
protein translocation across the outer membrane comes from the membrane
potential and mtHsp70 ATPase activity in the matrix, not from TOMM20.
There is no evidence in PMID:14557246 or any other publication that
TOMM20 itself has ATPase activity.
supported_by:
- reference_id: PMID:35733257
supporting_text: >-
Tom20, as the major import receptor, together with Tom70 and Tom22
target mitochondrial precursor proteins in the cytosol precisely
- term:
id: GO:0051082
label: unfolded protein binding
evidence_type: IDA
original_reference_id: PMID:14557246
review:
summary: >-
This annotation to GO:0051082 "unfolded protein binding" for TOMM20 is
misleading and represents an over-annotation. The cited paper (Yano et al.
2003, PMID:14557246) is primarily about AIP (arylhydrocarbon
receptor-interacting protein), not Tom20. The paper demonstrates that AIP
is the protein with chaperone-like activity that suppresses thermal
aggregation of substrate proteins and binds unfolded proteins. Tom20 is
shown to bind mitochondrial preproteins via their N-terminal presequences
(targeting signals), not based on their folding state. The binding groove
of Tom20 recognizes the hydrophobic face of amphiphilic helical
presequences through hydrophobic interactions, which is a signal
sequence recognition function, not an unfolded protein sensing function.
The paper explicitly states that Tom20 binds preproteins and non-mitochondrial
proteins were not bound, demonstrating specificity for mitochondrial targeting
signals rather than unfolded protein states per se. Furthermore, TOMM20
already has the correct and more specific annotation to GO:0030943
"mitochondrion targeting sequence binding" (IDA from PMID:35733257 and
IBA from GO_REF:0000033). The GO:0051082 term is being obsoleted
(go-ontology issue 30962) precisely because it conflates signal recognition
with chaperone activity. TOMM20 is a protein import receptor, not a
chaperone.
action: MARK_AS_OVER_ANNOTATED
reason: >-
TOMM20 does not function as an unfolded protein binding chaperone. The
evidence in PMID:14557246 shows Tom20 recognizes mitochondrial
presequences via hydrophobic interactions with the amphiphilic helical
targeting signal. The paper states: "The binding groove of Tom20 mainly
consists of a TPR and a glutamine-rich segment, and hydrophobic residues
in the groove interact with the hydrophobic face of the amphiphilic
helical presequence" and "AIP as well as Tom20 binds specifically to
mitochondrial preproteins" while "no or little binding of AIP and Tom20
to proteins destined for other organelles" was observed. This
demonstrates signal-specific recognition, not general unfolded protein
binding. The chaperone-like aggregation suppression activity described in
the paper belongs to AIP, not Tom20. TOMM20 already has the correct
annotation GO:0030943 "mitochondrion targeting sequence binding" which
accurately captures its molecular function. GO:0051082 is being
obsoleted (go-ontology#30962) because it conflates distinct molecular
mechanisms.
proposed_replacement_terms:
- id: GO:0030943
label: mitochondrion targeting sequence binding
additional_reference_ids:
- PMID:35733257
supported_by:
- reference_id: PMID:14557246
supporting_text: >-
The binding groove of Tom20 mainly consists of a TPR and a
glutamine-rich segment, and hydrophobic residues in the groove
interact with the hydrophobic face of the amphiphilic helical
presequence.
- reference_id: PMID:14557246
supporting_text: >-
AIP as well as Tom20 binds specifically to mitochondrial
preproteins [...] no or little binding of AIP and Tom20 to
proteins destined for other organelles, including peroxisomes,
ER, and nucleus, was observed.
- reference_id: PMID:14557246
supporting_text: >-
AIP was found to function as a chaperone to suppress thermal
aggregation of rhodanese and citrate synthase (Fig. 6). AIP may
function as a chaperone to maintain mitochondria-targeted
preproteins unfolded and to suppress their aggregation.
- reference_id: PMID:14557246
supporting_text: >-
Preproteins with NH2-terminal presequences are initially
recognized by the receptor Tom20, although preproteins with
internal targeting signals such as carrier proteins are
recognized preferentially by Tom70.
- term:
id: GO:0070585
label: protein localization to mitochondrion
evidence_type: IDA
original_reference_id: PMID:14557246
review:
summary: >-
IDA annotation from PMID:14557246 (Yano et al. 2003). The paper
demonstrates that Tom20 recognizes preproteins via their mitochondrial
targeting sequences and is part of the TOM complex that facilitates
protein import. GO:0070585 "protein localization to mitochondrion" is a
broad process term that accurately describes the outcome of TOMM20
activity. While more specific terms like GO:0006626 "protein targeting
to mitochondrion" or GO:0030150 "protein import into mitochondrial
matrix" are also appropriate, this broader term is not incorrect.
action: ACCEPT
reason: >-
Correct. TOMM20 facilitates protein localization to the mitochondrion
by recognizing mitochondrial targeting sequences. This is a core
biological process for TOMM20.
supported_by:
- reference_id: PMID:14557246
supporting_text: >-
Preproteins with NH2-terminal presequences are initially recognized
by the receptor Tom20
- term:
id: GO:0005742
label: mitochondrial outer membrane translocase complex
evidence_type: NAS
original_reference_id: PMID:7498524
review:
summary: >-
NAS annotation from PMID:7498524 (Seki et al. 1995), one of the original
papers identifying human TOMM20 (then called Mom19 homolog). The paper
showed that the human Mom19 homolog is targeted to yeast mitochondria and
specifically associates with the outer membrane receptor complex. This
was the original identification of human TOMM20 as a TOM complex component.
action: ACCEPT
reason: >-
Correct. This is the foundational paper identifying human TOMM20 as a
component of the mitochondrial outer membrane translocase complex.
supported_by:
- reference_id: PMID:7498524
supporting_text: >-
the human Mom19 homolog is targeted to isolated yeast mitochondria
and specifically associates with the outer membrane receptor complex,
suggesting that indeed a mitochondrial import receptor was identified.
core_functions:
- description: >-
TOMM20 is the primary presequence receptor of the TOM complex. Its cytosolic
TPR-containing domain recognizes the hydrophobic face of amphiphilic helical
N-terminal mitochondrial targeting sequences on nuclear-encoded preproteins,
facilitating their transfer to TOMM22 and into the TOMM40 translocation pore
for import into the mitochondrial matrix and inner membrane.
molecular_function:
id: GO:0030943
label: mitochondrion targeting sequence binding
directly_involved_in:
- id: GO:0030150
label: protein import into mitochondrial matrix
- id: GO:0070585
label: protein localization to mitochondrion
locations:
- id: GO:0005741
label: mitochondrial outer membrane
in_complex:
id: GO:0005742
label: mitochondrial outer membrane translocase complex
supported_by:
- reference_id: PMID:35733257
supporting_text: >-
both Tom20 and Tom22 were pulled down by the DHFR-EGFP protein fused
with the presequence of subunit 9 of F0-ATPase (Su9) (42), but not by
DHFR-EGFP protein without Su9, suggesting that Tom22 indeed forms a
complex with the presequence as Tom20.
- reference_id: PMID:14557246
supporting_text: >-
Preproteins with NH2-terminal presequences are initially recognized by
the receptor Tom20, although preproteins with internal targeting signals
such as carrier proteins are recognized preferentially by Tom70.
- reference_id: PMID:7498524
supporting_text: >-
the human Mom19 homolog is targeted to isolated yeast mitochondria
and specifically associates with the outer membrane receptor complex,
suggesting that indeed a mitochondrial import receptor was identified.
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO
terms
findings: []
- id: GO_REF:0000024
title: Manual transfer of experimentally-verified manual GO annotation data to orthologs
by curator judgment of sequence similarity
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000043
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location
vocabulary mapping, accompanied by conservative changes to GO terms applied by
UniProt
findings: []
- id: GO_REF:0000052
title: Gene Ontology annotation based on curation of immunofluorescence data
findings: []
- id: GO_REF:0000107
title: Automatic transfer of experimentally verified manual GO annotation data to
orthologs using Ensembl Compara
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:14557246
title: AIP is a mitochondrial import mediator that binds to both import receptor
Tom20 and preproteins.
findings: []
- id: PMID:15644312
title: Dissection of the mitochondrial import and assembly pathway for human Tom40.
findings: []
- id: PMID:18331822
title: Identification of Tom5 and Tom6 in the preprotein translocase complex of
human mitochondrial outer membrane.
findings: []
- id: PMID:20231292
title: Identification and characterization of mitochondrial targeting sequence of
human apurinic/apyrimidinic endonuclease 1.
findings: []
- id: PMID:20628368
title: Tom70 mediates activation of interferon regulatory factor 3 on mitochondria.
findings: []
- id: PMID:23455425
title: Autophagosomes form at ER-mitochondria contact sites.
findings: []
- id: PMID:25327288
title: Selective VPS34 inhibitor blocks autophagy and uncovers a role for NCOA4
in ferritin degradation and iron homeostasis in vivo.
findings: []
- id: PMID:25997101
title: QIL1 is a novel mitochondrial protein required for MICOS complex stability
and cristae morphology.
findings: []
- id: PMID:30021884
title: Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry
in Intact Cell Nuclei.
findings: []
- id: PMID:32848200
title: Ttm50 facilitates calpain activation by anchoring it to calcium stores and
increasing its sensitivity to calcium.
findings: []
- id: PMID:34800366
title: Quantitative high-confidence human mitochondrial proteome and its dynamics
in cellular context.
findings: []
- id: PMID:35271311
title: 'OpenCell: Endogenous tagging for the cartography of human cellular organization.'
findings: []
- id: PMID:35733257
title: Structural basis of Tom20 and Tom22 cytosolic domains as the human TOM complex
receptors.
findings: []
- id: PMID:38848361
title: Mechanism of human PINK1 activation at the TOM complex in a reconstituted
system.
findings: []
- id: PMID:7498524
title: A human homolog of the mitochondrial protein import receptor Mom19 can assemble
with the yeast mitochondrial receptor complex.
findings: []
- id: Reactome:R-HSA-5205649
title: p62 links damaged mitochondria to LC3
findings: []
- id: Reactome:R-HSA-5205661
title: Pink1 is recruited from the cytoplasm to the mitochondria
findings: []
- id: Reactome:R-HSA-5205663
title: LC3 binds the autophagosome membrane Atg5-Atg12 complex
findings: []
- id: Reactome:R-HSA-5205673
title: p62 binds ubiquitinated mitochondrial substrates
findings: []
- id: Reactome:R-HSA-5696872
title: USP30 deubiquitinates Ub-MOM proteins
findings: []
- id: Reactome:R-HSA-9824888
title: OPTN, TBK1 bind ubiquitinated MOM proteins
findings: []
- id: Reactome:R-HSA-9824892
title: MAP1LC3B binds p-S-OPTN bound to Ub-mitochondria
findings: []
- id: Reactome:R-HSA-9824894
title: TBK1 is phosphorylated within TBK1:OPTN:Ub-mitochondrial proteins
findings: []
- id: Reactome:R-HSA-9824897
title: p-S-TBK1 phosphorylates OPTN
findings: []
- id: Reactome:R-HSA-9834070
title: PRKN ubiquitinates MOM substrates
findings: []
- id: Reactome:R-HSA-9834945
title: PINK1 phosphorylates Ub on MOM proteins
findings: []
- id: Reactome:R-HSA-9835009
title: PRKN binds p-S-Ub:MOM proteins
findings: []
- id: Reactome:R-HSA-9835011
title: PINK1 phosphorylates PRKN at S65
findings: []
- id: Reactome:R-HSA-9840807
title: OPTN binds ATG9A
findings: []